X-linked syndromic intellectual disability
diseaseOn this page
Also known as intellectual disability, X-linked syndromicmental retardation, X-linked syndromicsyndromic intellectual disability, X-linkedsyndromic X-linked intellectual disability
Summary
X-linked syndromic intellectual disability (MONDO:0020119) is a disease (an umbrella term covering 81 Mondo subtypes) caused by DDX3X (GenCC Definitive), with 7 cohort genes.
At a glance
- Causal gene: DDX3X (GenCC Definitive)
- Umbrella term: 81 Mondo subtypes
- Cohort genes: 7
- ClinVar variants: 7
Clinical features
No curated clinical features (Orphanet) for this disease.
Identifiers
Disease identifiers
| Field | Value |
|---|---|
| Canonical name | X-linked syndromic intellectual disability |
| Mondo ID | MONDO:0020119 |
| OMIM | 309510 |
| Orphanet | 98464 |
| DOID | DOID:0060309 |
| Is cancer (heuristic) | no |
Also known as: intellectual disability, X-linked syndromic · mental retardation, X-linked syndromic · syndromic intellectual disability, X-linked · syndromic X-linked intellectual disability · X-linked syndromic intellectual disability
Data availability: 7 ClinVar variants · 2 GenCC gene-disease records.
Disease family
An umbrella term covering 81 Mondo subtypes.
Classification path: disease › human disease › disease by body system or component › nervous system disorder › neurodevelopmental disorder › intellectual disability › syndromic intellectual disability › X-linked syndromic intellectual disability
Related subtypes (16): Smith-Magenis syndrome, intellectual disability, Buenos-Aires type, intellectual disability, Wolff type, CK syndrome, AHDC1-related intellectual disability - obstructive sleep apnea - mild dysmorphism syndrome, 7p22.1 microduplication syndrome, 9p13 microdeletion syndrome, 3q27.3 microdeletion syndrome, 9q31.1q31.3 microdeletion syndrome, Rubinstein-Taybi syndrome, 9q33.3q34.11 microdeletion syndrome, autosomal recessive syndromic intellectual disability, autosomal dominant syndromic intellectual disability, aplasia cutis-enamel dysplasia syndrome, 2p25.3 microduplication syndrome, dyneinopathy
Subtypes (81): X-linked intellectual disability-psychosis-macroorchidism syndrome, X-linked intellectual disability-plagiocephaly syndrome, intellectual disability, X-linked 49, MEHMO syndrome, syndromic X-linked intellectual disability 7, syndromic X-linked intellectual disability Shashi type, syndromic X-linked intellectual disability Lubs type, syndromic X-linked intellectual disability Abidi type, syndromic X-linked intellectual disability Siderius type, X-linked intellectual disability, Cabezas type, X-linked intellectual disability, Stocco dos Santos type, X-linked intellectual disability-cubitus valgus-dysmorphism syndrome, corpus callosum agenesis-intellectual disability-coloboma-micrognathia syndrome, X-linked intellectual disability-cerebellar hypoplasia syndrome, Allan-Herndon-Dudley syndrome, syndromic X-linked intellectual disability Claes-Jensen type, X-linked intellectual disability-retinitis pigmentosa syndrome, syndromic X-linked intellectual disability 14, syndromic X-linked intellectual disability 94, intellectual disability, X-linked syndromic, Turner type, syndromic X-linked intellectual disability Shrimpton type, X-linked intellectual disability-craniofacioskeletal syndrome, syndromic X-linked intellectual disability Raymond type, syndromic X-linked intellectual disability 17, syndromic X-linked intellectual disability Nascimento type, syndromic X-linked intellectual disability Chudley-Schwartz type, X-linked intellectual disability-cardiomegaly-congestive heart failure syndrome, X-linked intellectual disability, Cantagrel type, X-linked intellectual disability-short stature-overweight syndrome, intellectual disability, X-linked, syndromic 33, syndromic X-linked intellectual disability 34, intellectual disability, X-linked 99, syndromic, female-restricted, intellectual disability, X-linked, syndromic, Bain type, Borjeson-Forssman-Lehmann syndrome, Coffin-Lowry syndrome, syndromic X-linked intellectual disability 5, X-linked intellectual disability-seizures-psoriasis syndrome, Renpenning syndrome, Partington syndrome, syndromic X-linked intellectual disability 12, severe X-linked intellectual disability, Gustavson type, syndromic X-linked intellectual disability Snyder type, Wilson-Turner syndrome, Prieto syndrome, skeletal dysplasia-intellectual disability syndrome, X-linked intellectual disability-spastic quadriparesis syndrome, early-onset parkinsonism-intellectual disability syndrome, X-linked intellectual disability, Schimke type, X-linked intellectual disability, Cilliers type, X-linked intellectual disability, van Esch type, X-linked intellectual disability-epilepsy syndrome, ATR-X-related syndrome, X-linked intellectual disability-hypogonadism-ichthyosis-obesity-short stature syndrome, X-linked intellectual disability, Schutz type, X-linked intellectual disability-hypotonia-movement disorder syndrome, X-linked intellectual disability with isolated growth hormone deficiency, X-linked intellectual disability-hypogammaglobulinemia-progressive neurological deterioration syndrome, X-linked intellectual disability-precocious puberty-obesity syndrome, X-linked intellectual disability-epilepsy-progressive joint contractures-dysmorphism syndrome, X-linked intellectual disability-macrocephaly-macroorchidism syndrome, X-linked intellectual disability, Pai type, X-linked intellectual disability, Seemanova type, X-linked intellectual disability, Stevenson type, X-linked intellectual disability, Stoll type, X-linked intellectual disability-acromegaly-hyperactivity syndrome, X-linked intellectual disability-corpus callosum agenesis-spastic quadriparesis syndrome, fried syndrome, X-linked intellectual disability-ataxia-apraxia syndrome, intellectual developmental disorder, X-linked, syndromic, Pilorge type, Paganini-Miozzo syndrome, intellectual developmental disorder, X-linked, syndromic, Hackmann-Di Donato type, intellectual disability, X-linked, syndromic, 35, intellectual disability, X-linked, syndromic, Houge type, MED12-related intellectual disability syndrome, NAA10-related syndrome, ATP6AP2-related disorder, X-linked intellectual disability with hypopituitarism, SOX3-related X-linked pituitary hormone deficiency with or without intellectual developmental disorder, intellectual developmental disorder, X-linked, syndromic, with pigmentary mosaicism and coarse facies, intellectual developmental disorder, X-linked, syndromic 37, CASK-related intellectual disability
Genetics & variants
GWAS landscape
No GWAS associations recorded — common-variant (GWAS) studies don’t cover this disease (typical for Mendelian / rare diseases). See the curated gene cohort and Mendelian overlap below.
Variant details and genetic-evidence tiers
ClinVar germline variants
7 retrieved; paginated sample, class counts are floors:
2 uncertain significance, 2 pathogenic, 1 conflicting classifications of pathogenicity, 1 not provided, 1 likely pathogenic
| ClinVar | Variant (HGVS) | Gene | Classification | Review |
|---|---|---|---|---|
| 1699292 | NM_001367721.1(CASK):c.2039+1G>A | CASK | Pathogenic | criteria provided, single submitter |
| 375706 | NM_001291867.2(NHS):c.4448C>G (p.Ser1483Cys) | NHS | Pathogenic | criteria provided, single submitter |
| 4075752 | NM_001272071.2(AP1S2):c.4C>T (p.Gln2Ter) | AP1S2 | Likely pathogenic | no assertion criteria provided |
| 1704169 | NM_001356.5(DDX3X):c.1106C>G (p.Thr369Ser) | DDX3X | Conflicting classifications of pathogenicity | criteria provided, conflicting classifications |
| 2443366 | NM_153252.5(BRWD3):c.4057CAA[4] (p.Gln1354_Asp1355insGlnGln) | BRWD3 | Uncertain significance | criteria provided, multiple submitters, no conflicts |
| 1197312 | NM_004187.5(KDM5C):c.2944C>T (p.Arg982Cys) | KDM5C | Uncertain significance | criteria provided, multiple submitters, no conflicts |
| 1810328 | NM_001356.5(DDX3X):c.629C>T (p.Ala210Val) | DDX3X | not provided | no classification provided |
Genes & proteins
Mendelian disease overlap and somatic drivers
GenCC: 10 · Orphanet: 15 · OMIM-shared: 0 · Dual-evidence (GWAS+Mendelian): 0
GenCC gene–disease validity (cohort genes)
the Disease column is the GenCC-asserted condition — a cohort gene’s strongest validity may be for a related predisposition syndrome.
| Gene | Classification | Inheritance | Disease | Records |
|---|---|---|---|---|
| DDX3X | Definitive | X-linked | intellectual disability, X-linked 102 | 7 |
| STEEP1 | Moderate | X-linked | intellectual disability, X-linked 107 | 3 |
Orphanet rare-disease linkage (cohort genes)
| Gene | Orphanet ID | Rare disease |
|---|---|---|
| DDX3X | Orphanet:3338 | Toriello-Carey syndrome |
| DDX3X | Orphanet:457260 | X-linked intellectual disability-hypotonia-movement disorder syndrome |
| DDX3X | Orphanet:99861 | Precursor T-cell acute lymphoblastic leukemia |
| STEEP1 | Orphanet:777 | X-linked non-syndromic intellectual disability |
| KDM5C | Orphanet:85279 | KDM5C-related syndromic X-linked intellectual disability |
| CASK | Orphanet:163937 | X-linked intellectual disability, Najm type |
| CASK | Orphanet:1934 | Early infantile developmental and epileptic encephalopathy |
| CASK | Orphanet:777 | X-linked non-syndromic intellectual disability |
| BRWD3 | Orphanet:528084 | Non-specific syndromic intellectual disability |
| AP1S2 | Orphanet:1568 | X-linked intellectual disability-Dandy-Walker malformation-basal ganglia disease-seizures syndrome |
| AP1S2 | Orphanet:85329 | X-linked intellectual disability-hypotonia-facial dysmorphism-aggressive behavior syndrome |
| AP1S2 | Orphanet:85335 | Fried syndrome |
| NHS | Orphanet:627 | Nance-Horan syndrome |
| NHS | Orphanet:98991 | Early-onset nuclear cataract |
| NHS | Orphanet:98994 | Total early-onset cataract |
Cohort genes → proteins
7 cohort genes, 7 distinct canonical proteins.
Evidence partition
| Subset | Genes |
|---|---|
| multi_evidence | 7 |
Cohort genes (full)
| Symbol | HGNC | Ensembl | UniProt | Name | Evidence |
|---|---|---|---|---|---|
| DDX3X | HGNC:2745 | ENSG00000215301 | O00571 | ATP-dependent RNA helicase DDX3X | gencc,clinvar |
| STEEP1 | HGNC:26239 | ENSG00000018610 | Q9H5V9 | STING ER exit protein | gencc |
| KDM5C | HGNC:11114 | ENSG00000126012 | P41229 | Lysine-specific demethylase 5C | clinvar |
| CASK | HGNC:1497 | ENSG00000147044 | O14936 | Peripheral plasma membrane protein CASK | clinvar |
| BRWD3 | HGNC:17342 | ENSG00000165288 | Q6RI45 | Bromodomain and WD repeat-containing protein 3 | clinvar |
| AP1S2 | HGNC:560 | ENSG00000182287 | P56377 | AP-1 complex subunit sigma-2 | clinvar |
| NHS | HGNC:7820 | ENSG00000188158 | Q6T4R5 | Actin remodeling regulator NHS | clinvar |
Cohort function summary
Lead sentence per gene, UniProt-curated.
| Symbol | Protein name | Function (lead sentence) |
|---|---|---|
| DDX3X | ATP-dependent RNA helicase DDX3X | Multifunctional ATP-dependent RNA helicase. |
| STEEP1 | STING ER exit protein | Molecular adapter that stimulates membrane curvature formation and subsequent endoplasmic reticulum exit site (ERES) establishment by recruiting PI3K complex I, leading to COPII vesicle-mediated transport. |
| KDM5C | Lysine-specific demethylase 5C | Histone demethylase that specifically demethylates ‘Lys-4’ of histone H3, thereby playing a central role in histone code. |
| CASK | Peripheral plasma membrane protein CASK | Multidomain scaffolding Mg(2+)-independent protein kinase that catalyzes the phosphotransfer from ATP to proteins such as NRXN1, and plays a role in synaptic transmembrane protein anchoring and ion channel trafficking. |
| BRWD3 | Bromodomain and WD repeat-containing protein 3 | Plays a role in the regulation of cell morphology and cytoskeletal organization. |
| AP1S2 | AP-1 complex subunit sigma-2 | Subunit of clathrin-associated adaptor protein complex 1 that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. |
| NHS | Actin remodeling regulator NHS | May function in cell morphology by maintaining the integrity of the circumferential actin ring and controlling lamellipod formation. |
Protein-family classification
Druggable: 2 · Difficult: 2 · Unknown: 3 · Druggable fraction: 0.29
Family distribution
Cohort families vs a genome-wide background (hypergeometric, BH-FDR; fold = observed/expected). Counts kept; sorted by enrichment, so the catch-all Other/Unknown bucket no longer leads.
| Family | Genes | Fold | FDR |
|---|---|---|---|
| Kinase | 1 | 4.0× | 0.744 |
| Scaffold/PPI | 1 | 2.5× | 0.744 |
| Enzyme (other) | 1 | 1.7× | 0.744 |
| Transcription factor | 1 | 1.2× | 0.744 |
| Other/Unknown | 3 | 0.8× | 0.858 |
Per-gene assignment
| Symbol | Family | Druggable? | EC | InterPro (top 3) |
|---|---|---|---|---|
| DDX3X | Enzyme (other) | yes | 3.6.4.13 | RNA-helicase_DEAD-box_CS, Helicase_C-like, DEAD/DEAH_box_helicase_dom |
| STEEP1 | Other/Unknown | no | STEEP-like, STEEP1_dom | |
| KDM5C | Transcription factor | no | 1.14.11.67 | ARID_dom, Znf_PHD, JmjC_dom |
| CASK | Kinase | yes | 2.7.11.1 | Prot_kinase_dom, SH3_domain, PDZ |
| BRWD3 | Scaffold/PPI | no | Bromodomain, WD40_rpt, WD40/YVTN_repeat-like_dom_sf | |
| AP1S2 | Other/Unknown | no | Clathrin_sm-chain_CS, Longin-like_dom_sf, AP_complex_ssu | |
| NHS | Other/Unknown | no | NHS-like |
Expression context
Cohort genes with no expression data: 0.
7 cohort genes are a single-cell marker in ≥1 SCXA experiment.
Breadth distribution (Bgee present_calls)
| Bucket | Genes |
|---|---|
| narrow (1-5 tissues) | 0 |
| moderate (6-20) | 0 |
| broad (>20) | 7 |
| unknown | 0 |
Top tissues across cohort
| Tissue | Cohort genes |
|---|---|
| oocyte | 2 |
| stromal cell of endometrium | 2 |
| buccal mucosa cell | 2 |
| choroid plexus epithelium | 1 |
| sperm | 1 |
| secondary oocyte | 1 |
| right uterine tube | 1 |
| sural nerve | 1 |
| cortical plate | 1 |
| hair follicle | 1 |
| calcaneal tendon | 1 |
| epithelial cell of pancreas | 1 |
| tendon of biceps brachii | 1 |
| cauda epididymis | 1 |
| corpus epididymis | 1 |
| monocyte | 1 |
| endothelial cell | 1 |
| oviduct epithelium | 1 |
Per-gene tissue summary (top 30)
| Symbol | Bgee breadth | FANTOM5 breadth | SCXA | Top tissues |
|---|---|---|---|---|
| DDX3X | 294 | ubiquitous | marker | choroid plexus epithelium, oocyte, sperm |
| STEEP1 | 240 | ubiquitous | marker | oocyte, stromal cell of endometrium, secondary oocyte |
| KDM5C | 279 | ubiquitous | marker | sural nerve, stromal cell of endometrium, right uterine tube |
| CASK | 284 | ubiquitous | marker | buccal mucosa cell, hair follicle, cortical plate |
| BRWD3 | 223 | ubiquitous | marker | tendon of biceps brachii, epithelial cell of pancreas, calcaneal tendon |
| AP1S2 | 289 | ubiquitous | marker | corpus epididymis, cauda epididymis, monocyte |
| NHS | 214 | ubiquitous | marker | oviduct epithelium, buccal mucosa cell, endothelial cell |
Protein interactions among cohort
Intra-cohort edges: 1.
Hub genes (top 10 by interactor count)
| Symbol | Interactor count |
|---|---|
| DDX3X | 6,454 |
| CASK | 4,223 |
| KDM5C | 4,183 |
| BRWD3 | 2,714 |
| AP1S2 | 1,346 |
| STEEP1 | 1,195 |
| NHS | 970 |
Intra-cohort edges
| A | B | Sources |
|---|---|---|
| DDX3X | KDM5C | string_interaction |
Structural data
PDB: 4 · AlphaFold-only: 3 · No structure: 0
Cohort genes with PDB structures (top 30)
| Symbol | UniProt | PDB entries |
|---|---|---|
| CASK | O14936 | 22 |
| DDX3X | O00571 | 17 |
| STEEP1 | Q9H5V9 | 2 |
| KDM5C | P41229 | 2 |
AlphaFold-only cohort genes (top 30 by pLDDT)
| Symbol | UniProt | pLDDT |
|---|---|---|
| AP1S2 | P56377 | 94.36 |
| BRWD3 | Q6RI45 | 65.11 |
| NHS | Q6T4R5 | 43.65 |
Function
Pathway analysis
Distinct Reactome pathways touched by cohort: 35. Enrichment computed across 7 evidence-associated genes (6 with Reactome annotation).
Pathways by enrichment
Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 6 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.
| Pathway | Cohort genes | Fold | FDR | Sample cohort genes |
|---|---|---|---|---|
| Nef mediated downregulation of MHC class I complex cell surface expression | 1 | 190.3× | 0.070 | AP1S2 |
| Nef-mediates down modulation of cell surface receptors by recruiting them to clathrin adapters | 1 | 105.7× | 0.070 | AP1S2 |
| The role of Nef in HIV-1 replication and disease pathogenesis | 1 | 105.7× | 0.070 | AP1S2 |
| Dopamine Neurotransmitter Release Cycle | 1 | 82.8× | 0.070 | CASK |
| Nephrin family interactions | 1 | 79.3× | 0.070 | CASK |
| Syndecan interactions | 1 | 70.5× | 0.070 | CASK |
| Host Interactions of HIV factors | 1 | 56.0× | 0.070 | AP1S2 |
| Dengue virus activates/modulates innate and adaptive immune responses | 1 | 56.0× | 0.070 | DDX3X |
| Lysosome Vesicle Biogenesis | 1 | 54.4× | 0.070 | AP1S2 |
| trans-Golgi Network Vesicle Budding | 1 | 42.3× | 0.070 | AP1S2 |
| Assembly and cell surface presentation of NMDA receptors | 1 | 42.3× | 0.070 | CASK |
| HDMs demethylate histones | 1 | 38.1× | 0.070 | KDM5C |
| Sensory processing of sound by outer hair cells of the cochlea | 1 | 34.0× | 0.070 | CASK |
| Golgi Associated Vesicle Biogenesis | 1 | 33.4× | 0.070 | AP1S2 |
| Neurexins and neuroligins | 1 | 32.8× | 0.070 | CASK |
| Sensory processing of sound by inner hair cells of the cochlea | 1 | 27.2× | 0.079 | CASK |
| RAC2 GTPase cycle | 1 | 21.1× | 0.091 | NHS |
| HIV Infection | 1 | 19.8× | 0.091 | AP1S2 |
| RAC3 GTPase cycle | 1 | 19.8× | 0.091 | NHS |
| mRNA Splicing | 1 | 18.3× | 0.093 | STEEP1 |
| MHC class II antigen presentation | 1 | 14.9× | 0.109 | AP1S2 |
| Processing of Capped Intron-Containing Pre-mRNA | 1 | 13.7× | 0.109 | STEEP1 |
| Chromatin organization | 1 | 13.6× | 0.109 | KDM5C |
| Chromatin modifying enzymes | 1 | 12.1× | 0.117 | KDM5C |
| RAC1 GTPase cycle | 1 | 10.2× | 0.132 | NHS |
| mRNA Splicing - Major Pathway | 1 | 9.1× | 0.141 | STEEP1 |
| Metabolism of RNA | 1 | 7.0× | 0.176 | STEEP1 |
| Membrane Trafficking | 1 | 6.2× | 0.189 | AP1S2 |
| Vesicle-mediated transport | 1 | 5.8× | 0.194 | AP1S2 |
| Viral Infection Pathways | 1 | 5.1× | 0.209 | AP1S2 |
GO biological processes by enrichment
Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 7 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.
| GO term | Cohort genes | Fold | FDR | Sample cohort genes |
|---|---|---|---|---|
| negative regulation of cellular response to growth factor stimulus | 1 | 1203.7× | 0.022 | CASK |
| positive regulation of toll-like receptor 8 signaling pathway | 1 | 802.5× | 0.022 | DDX3X |
| positive regulation of translation in response to endoplasmic reticulum stress | 1 | 601.9× | 0.022 | DDX3X |
| positive regulation of toll-like receptor 7 signaling pathway | 1 | 481.5× | 0.022 | DDX3X |
| positive regulation of chemokine (C-C motif) ligand 5 production | 1 | 401.2× | 0.022 | DDX3X |
| cytosolic ribosome assembly | 1 | 343.9× | 0.022 | DDX3X |
| endoplasmic reticulum membrane organization | 1 | 343.9× | 0.022 | STEEP1 |
| protein exit from endoplasmic reticulum | 1 | 300.9× | 0.022 | STEEP1 |
| cellular response to arsenic-containing substance | 1 | 300.9× | 0.022 | DDX3X |
| positive regulation of protein K63-linked ubiquitination | 1 | 300.9× | 0.022 | DDX3X |
| protein localization to cytoplasmic stress granule | 1 | 300.9× | 0.022 | DDX3X |
| negative regulation of wound healing | 1 | 185.2× | 0.029 | CASK |
| cellular response to osmotic stress | 1 | 172.0× | 0.029 | DDX3X |
| positive regulation of mitochondrial translation | 1 | 160.5× | 0.029 | DDX3X |
| positive regulation of calcium ion import | 1 | 133.8× | 0.029 | CASK |
| negative regulation of cell-matrix adhesion | 1 | 126.7× | 0.029 | CASK |
| cytoplasmic pattern recognition receptor signaling pathway | 1 | 126.7× | 0.029 | DDX3X |
| gamete generation | 1 | 126.7× | 0.029 | DDX3X |
| melanosome assembly | 1 | 126.7× | 0.029 | AP1S2 |
| positive regulation of translational initiation | 1 | 120.4× | 0.029 | DDX3X |
| calcium ion import | 1 | 114.6× | 0.029 | CASK |
| regulation of neurotransmitter secretion | 1 | 109.4× | 0.029 | CASK |
| negative regulation of intrinsic apoptotic signaling pathway | 1 | 109.4× | 0.029 | DDX3X |
| negative regulation of keratinocyte proliferation | 1 | 100.3× | 0.029 | CASK |
| platelet dense granule organization | 1 | 96.3× | 0.029 | AP1S2 |
| positive regulation of interferon-alpha production | 1 | 92.6× | 0.029 | DDX3X |
| stress granule assembly | 1 | 86.0× | 0.029 | DDX3X |
| positive regulation of viral genome replication | 1 | 83.0× | 0.029 | DDX3X |
| positive regulation of NLRP3 inflammasome complex assembly | 1 | 83.0× | 0.029 | DDX3X |
| negative regulation of extrinsic apoptotic signaling pathway via death domain receptors | 1 | 83.0× | 0.029 | DDX3X |
Therapeutics
Drug target analysis
Approved (phase 4): 3 · Phase ≥3: 3 · Phased (≥1): 3 · Undrugged: 4
Druggability breadth: 5 of 7 evidence-associated genes (71%) have a ChEMBL target (buckets above are over the deeply-mined display cohort).
Genes with an approved drug
The molecule shown is one approved compound that hits the gene — not necessarily a drug of choice or one indicated for this disease.
| Symbol | Example approved molecule |
|---|---|
| DDX3X | IMATINIB |
| KDM5C | DEFERIPRONE |
| CASK | FEDRATINIB |
Top cohort targets by molecule count
| Symbol | Molecules | Max phase |
|---|---|---|
| CASK | 9 | 4 |
| DDX3X | 1 | 4 |
| KDM5C | 1 | 4 |
| STEEP1 | 0 | 0 |
| BRWD3 | 0 | 0 |
| AP1S2 | 0 | 0 |
| NHS | 0 | 0 |
Drugs targeting cohort genes (top 30)
| Molecule | Max phase | Targets in cohort |
|---|---|---|
| IMATINIB | 4 | DDX3X |
| DEFERIPRONE | 4 | KDM5C |
| FEDRATINIB | 4 | CASK |
| RUXOLITINIB | 4 | CASK |
| BOSUTINIB | 4 | CASK |
| CRIZOTINIB | 4 | CASK |
| LESTAURTINIB | 3 | CASK |
| CYC-065 | 2 | CASK |
| RG-547 | 2 | CASK |
| AT-7519 | 2 | CASK |
| BMS-387032 | 1 | CASK |
Bioactivity and enzyme data
Enzyme cohort genes (≥1 EC): 3.
Cohort genes with ChEMBL bioactivity (full, sorted by assay count)
| Symbol | Assays | Type breakdown |
|---|---|---|
| CASK | 92 | Binding:92 |
| KDM5C | 49 | Binding:49 |
| DDX3X | 32 | Binding:31, ADMET:1 |
| STEEP1 | 6 | Binding:6 |
| BRWD3 | 5 | Binding:5 |
Cohort enzymes (BRENDA EC)
| Symbol | EC numbers | Names |
|---|---|---|
| DDX3X | 3.6.4.13 | RNA helicase |
| KDM5C | 1.14.11.67 | [histone H3]-trimethyl-L-lysine4 demethylase |
| CASK | 2.7.11.1, 2.7.4.8 | non-specific serine/threonine protein kinase, guanylate kinase |
Pharmacogenomics
Cohort genes with a PharmGKB record: 7; with CPIC/DPWG dosing guidelines: 0.
No cohort gene has a CPIC/DPWG genotype-guided dosing guideline (PharmGKB).
Chemical tractability of cohort targets
11 approved/phased compounds have measured bioactivity against a cohort gene (and aren’t yet in disease-level trials). This is a research / tractability signal, NOT a therapeutic recommendation — a bioactivity row often reflects off-target or screening binding (e.g. promiscuous kinase inhibitors against a cohort kinase), implying no disease mechanism.
| Compound | Max phase | Cohort target (bioactivity) |
|---|---|---|
| IMATINIB | 4 | DDX3X |
| DEFERIPRONE | 4 | KDM5C |
| FEDRATINIB | 4 | CASK |
| RUXOLITINIB | 4 | CASK |
| BOSUTINIB | 4 | CASK |
| CRIZOTINIB | 4 | CASK |
| LESTAURTINIB | 3 | CASK |
| CYC-065 | 2 | CASK |
| RG-547 | 2 | CASK |
| AT-7519 | 2 | CASK |
| BMS-387032 | 1 | CASK |
Druggability pyramid
Cohort genes binned by druggability tier (high → low):
| Tier | Definition | Genes | Symbols |
|---|---|---|---|
| A | Approved (phase 4 drug) | 3 | DDX3X, KDM5C, CASK |
| B | Phased (≥1) drug, not yet approved | 0 | |
| C | Druggable family + PDB, no drug | 0 | |
| D | Druggable family + AlphaFold only, no drug | 0 | |
| E | Difficult family or no structure, no drug | 4 | STEEP1, BRWD3, AP1S2, NHS |
Undrugged target profiles
4 cohort genes are undrugged. Ranked by ‘starting-point quality’ (assay depth + drugged-partner adjacency).
| Symbol | ChEMBL assays | Drugged partners (top 3) |
|---|---|---|
| STEEP1 | 6 | — |
| BRWD3 | 5 | — |
| AP1S2 | 0 | — |
| NHS | 0 | — |
Clinical trials & evidence
Clinical trials
Clinical trials: 0.