ABCA12
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Also known as DKFZP434G232LI2
Summary
ABCA12 (ATP binding cassette subfamily A member 12, HGNC:14637) is a protein-coding gene on chromosome 2q35, encoding Glucosylceramide transporter ABCA12 (Q86UK0). Transports lipids such as glucosylceramides from the outer to the inner leaflet of lamellar granules (LGs) membrane, whereby the lipids are finally transported to the keratinocyte periphery via the trans-Golgi network and LGs and released to the apical surface of the granular ke….
The membrane-associated protein encoded by this gene is a member of the superfamily of ATP-binding cassette (ABC) transporters. ABC proteins transport various molecules across extra- and intracellular membranes. ABC genes are divided into seven distinct subfamilies (ABC1, MDR/TAP, MRP, ALD, OABP, GCN20, and White). This encoded protein is a member of the ABC1 subfamily, which is the only major ABC subfamily found exclusively in multicellular eukaryotes. Alternative splicing of this gene results in multiple transcript variants.
Source: NCBI Gene 26154 — RefSeq curated summary.
At a glance
- Gene–disease (curated): autosomal recessive congenital ichthyosis 4B (Definitive, GenCC) — +4 more curated relationships
- Clinical variants (ClinVar): 1,807 total — 110 pathogenic, 89 likely-pathogenic
- Phenotypes (HPO): 54
- MANE Select transcript:
NM_173076
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:14637 |
| Approved symbol | ABCA12 |
| Name | ATP binding cassette subfamily A member 12 |
| Location | 2q35 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | DKFZP434G232, LI2 |
| Ensembl gene | ENSG00000144452 |
| Ensembl biotype | protein_coding |
| OMIM | 607800 |
| Entrez | 26154 |
Gene structure
Transcript identifiers
Ensembl transcripts: 3 — 3 protein_coding
ENST00000272895, ENST00000389661, ENST00000412081
RefSeq mRNA: 2 — MANE Select: NM_173076
NM_015657, NM_173076
CCDS: CCDS33372, CCDS33373
Canonical transcript exons
ENST00000272895 — 53 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000785453 | 214934078 | 214934215 |
| ENSE00000785454 | 214937510 | 214937615 |
| ENSE00000796793 | 214942925 | 214943017 |
| ENSE00000965174 | 215001558 | 215001737 |
| ENSE00000965175 | 215000705 | 215001020 |
| ENSE00000965176 | 214997695 | 214997809 |
| ENSE00000965185 | 214989552 | 214989621 |
| ENSE00000965187 | 214986542 | 214986728 |
| ENSE00000965188 | 214982187 | 214982383 |
| ENSE00000965194 | 214980483 | 214980643 |
| ENSE00000965195 | 214978804 | 214979040 |
| ENSE00000965196 | 214978316 | 214978466 |
| ENSE00000965197 | 214975785 | 214976037 |
| ENSE00000965198 | 214974778 | 214974864 |
| ENSE00000965199 | 214973949 | 214974042 |
| ENSE00000965200 | 214970273 | 214970400 |
| ENSE00000965201 | 214968720 | 214968807 |
| ENSE00000965203 | 214958277 | 214958454 |
| ENSE00000965204 | 214956663 | 214956778 |
| ENSE00000965205 | 214955202 | 214955361 |
| ENSE00000965206 | 214953854 | 214954107 |
| ENSE00000965207 | 214950879 | 214951083 |
| ENSE00000965208 | 214949040 | 214949149 |
| ENSE00000965209 | 214948596 | 214948737 |
| ENSE00000965969 | 215026820 | 215026938 |
| ENSE00000965970 | 215025673 | 215025779 |
| ENSE00001038423 | 215004209 | 215004299 |
| ENSE00001038424 | 215019540 | 215019796 |
| ENSE00001038465 | 215019336 | 215019448 |
| ENSE00001038489 | 214990702 | 214991031 |
| ENSE00001038505 | 215018008 | 215018132 |
| ENSE00001147155 | 214966848 | 214966953 |
| ENSE00001159716 | 214987647 | 214987793 |
| ENSE00001159727 | 214945001 | 214945104 |
| ENSE00001218062 | 215010331 | 215010470 |
| ENSE00001218069 | 215011439 | 215011649 |
| ENSE00001218123 | 214947422 | 214947556 |
| ENSE00001218183 | 214959024 | 214959078 |
| ENSE00001218264 | 214989329 | 214989463 |
| ENSE00001218297 | 215007727 | 215007846 |
| ENSE00001218314 | 215011971 | 215012135 |
| ENSE00001218381 | 215031821 | 215031896 |
| ENSE00001294976 | 215036953 | 215037065 |
| ENSE00001319569 | 215045837 | 215046015 |
| ENSE00001332834 | 215049626 | 215049811 |
| ENSE00001332836 | 215052487 | 215052584 |
| ENSE00001332837 | 215054573 | 215054664 |
| ENSE00001332839 | 215064066 | 215064219 |
| ENSE00001332840 | 215111597 | 215111690 |
| ENSE00001332842 | 215138140 | 215138626 |
| ENSE00001506513 | 214983647 | 214983865 |
| ENSE00001506521 | 215015490 | 215015663 |
| ENSE00001865752 | 214931542 | 214932741 |
Expression profiles
Bgee: expression breadth broad, 95 present calls, max score 91.76.
FANTOM5 (CAGE): breadth broad, TPM avg 1.6735 / max 155.4044, expressed in 236 samples.
FANTOM5 promoters (4 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 33558 | 0.8893 | 195 |
| 33559 | 0.6234 | 176 |
| 33560 | 0.1151 | 64 |
| 33561 | 0.0457 | 17 |
Top tissues by expression
258 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| penis | UBERON:0000989 | 91.76 | gold quality |
| upper leg skin | UBERON:0004262 | 89.78 | gold quality |
| upper arm skin | UBERON:0004263 | 89.21 | gold quality |
| mammalian vulva | UBERON:0000997 | 88.50 | gold quality |
| skin of leg | UBERON:0001511 | 84.69 | gold quality |
| skin of abdomen | UBERON:0001416 | 84.33 | gold quality |
| zone of skin | UBERON:0000014 | 84.29 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 76.83 | gold quality |
| skin of hip | UBERON:0001554 | 73.77 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 73.25 | gold quality |
| cervix epithelium | UBERON:0004801 | 67.98 | gold quality |
| lower esophagus mucosa | UBERON:0035834 | 63.82 | gold quality |
| esophagus mucosa | UBERON:0002469 | 61.30 | gold quality |
| vagina | UBERON:0000996 | 61.14 | gold quality |
| tongue squamous epithelium | UBERON:0006919 | 60.74 | gold quality |
| gingival epithelium | UBERON:0001949 | 60.47 | gold quality |
| gingiva | UBERON:0001828 | 59.90 | gold quality |
| oviduct epithelium | UBERON:0004804 | 59.14 | silver quality |
| nipple | UBERON:0002030 | 57.16 | gold quality |
| tonsil | UBERON:0002372 | 54.98 | gold quality |
| ganglionic eminence | UBERON:0004023 | 54.73 | silver quality |
| cortical plate | UBERON:0005343 | 54.13 | gold quality |
| uterine cervix | UBERON:0000002 | 54.05 | gold quality |
| cervix squamous epithelium | UBERON:0006922 | 53.72 | silver quality |
| pigmented layer of retina | UBERON:0001782 | 52.27 | silver quality |
| olfactory segment of nasal mucosa | UBERON:0005386 | 50.98 | gold quality |
| ventricular zone | UBERON:0003053 | 50.85 | silver quality |
| corpus epididymis | UBERON:0004359 | 50.62 | gold quality |
| nasal cavity mucosa | UBERON:0001826 | 49.89 | gold quality |
| bone marrow cell | CL:0002092 | 49.61 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 7.88 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): NR1H3, PPARA, PPARG, RARA, VDR
miRNA regulators (miRDB)
49 targeting ABCA12, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-8485 | 100.00 | 77.57 | 4731 |
| HSA-MIR-1252-5P | 100.00 | 69.80 | 2774 |
| HSA-MIR-30A-5P | 100.00 | 76.31 | 3233 |
| HSA-MIR-30B-5P | 100.00 | 76.29 | 3248 |
| HSA-MIR-30C-5P | 100.00 | 76.29 | 3248 |
| HSA-MIR-30D-5P | 100.00 | 76.32 | 3233 |
| HSA-MIR-30E-5P | 100.00 | 76.32 | 3242 |
| HSA-MIR-3662 | 99.99 | 73.82 | 5684 |
| HSA-MIR-4789-3P | 99.99 | 70.75 | 2484 |
| HSA-MIR-128-3P | 99.95 | 71.17 | 2484 |
| HSA-MIR-216A-3P | 99.95 | 71.19 | 2505 |
| HSA-MIR-144-3P | 99.94 | 73.98 | 2698 |
| HSA-MIR-3119 | 99.92 | 71.34 | 2390 |
| HSA-MIR-4753-3P | 99.90 | 71.03 | 3786 |
| HSA-MIR-3681-3P | 99.88 | 70.46 | 2254 |
| HSA-MIR-6875-3P | 99.82 | 70.26 | 2983 |
| HSA-MIR-4659A-3P | 99.80 | 72.62 | 4248 |
| HSA-MIR-4659B-3P | 99.80 | 72.62 | 4248 |
| HSA-MIR-1299 | 99.77 | 71.24 | 2389 |
| HSA-MIR-4766-5P | 99.75 | 69.23 | 2662 |
| HSA-MIR-4320 | 99.75 | 65.80 | 793 |
| HSA-MIR-6516-3P | 99.65 | 68.57 | 1238 |
| HSA-MIR-587 | 99.64 | 70.86 | 2611 |
| HSA-MIR-875-3P | 99.63 | 69.47 | 2548 |
| HSA-MIR-6134 | 99.63 | 65.68 | 1537 |
| HSA-MIR-12123 | 99.52 | 71.79 | 2990 |
| HSA-MIR-548G-3P | 99.48 | 68.67 | 2159 |
| HSA-MIR-4786-3P | 99.36 | 68.35 | 1390 |
| HSA-MIR-6853-3P | 99.36 | 70.79 | 1558 |
| HSA-MIR-130A-5P | 99.33 | 70.26 | 2623 |
Literature-anchored findings (GeneRIF, showing 40)
- Cloning, characterization and chromosome mapping of ABCA12. (PMID:12697999)
- Mutations in the transporter ABCA12 are associated with lamellar ichthyosis type 2. (PMID:12915478)
- Sequencing of the ABCA12 gene, which maps within the minimal region defined by homozygosity mapping, revealed disease-associated mutations, including large intragenic deletions and frameshift deletions in 11 of the 12 screened individuals with HI. (PMID:15756637)
- 5 distinct ABCA12 mutations, either in a compound heterozygous or homozygous state, in patients from 4 harlequin ichthyosis families (PMID:16007253)
- These mutation data establish ABCA12 as the major harlequin ichthyosis gene. (PMID:16902423)
- study identified two novel ABCA12 mutations in two unrelated non-bullous congenital ichthyosiform erythroderma patients; both patients presented with multiple skin malignancies including malignant melanoma (PMID:17508018)
- Our findings demonstrate that ABCA12 is highly expressed in fetal skin and suggest that ABCA12 may play an essential role under both the wet and dry conditions. (PMID:17591952)
- PPAR and LXR activators regulate ABCA12 expression in human keratinocytes. (PMID:17611579)
- ABCA12 plays an important role in lipid transport from the Golgi apparatus to lamellar granules in human granular layer keratinocytes. (PMID:17927575)
- mutation analysis of twelve families demonstrated novel and recurring ABCA12 mutations (PMID:17986308)
- ABCA12 is reduced in harlequin ichrhyosis and thus is a key molecule in regulating keratinocyte differentiation and transporting specific proteases associated with desquamation. (PMID:19179616)
- ABCA12 is a major causative gene for non-bullous congenital ichthyosiform erythroderma. (PMID:19262603)
- ceramide, an important lipid component of epidermis, up-regulates ABCA12 expression via the PPARdelta-mediated signaling pathway, providing a substrate-driven, feed-forward mechanism for regulating this key lipid transporter (PMID:19429679)
- loss of ABCA12 function leads to a defective lipid barrier in the stratum corneum, resulting in an ichthyotic phenotype (Review) (PMID:20672373)
- Our results clearly demonstrate that ABCA12 deficiency impairs glucosylceramide accumulation in lamellar bodies, thereby strongly indicating that ABCA12 transports glucosylceramide to the inner leaflet of lamellar bodies. (PMID:20869849)
- Mutation analysis revealed that 52% of the survivors of harlequin ichthyosis had compound heterozygous mutations of ABCA12, whereas all deaths were associated with homozygous mutations of ABCA12. (PMID:21339420)
- AKT signaling helps ABCA12 deficient keratinocytes survive during the keratinization process. (PMID:21633372)
- The authors report on a 2282del4 mutation that may be associated with ichthyosis vulgaris in a Pakistani population. (PMID:21712002)
- The researchers report on another fatal case of Harlequin ichthyosis that may be associated with mutations of the ABCA12 gene (PMID:21798141)
- We show that homozygosity for a novel c.4676G>T transition in the ABCA12 gene, resulting in a p.G1559V substitution, causes non-bullous congenital ichthyosiform erythroderms in 5 members of an extended family. (PMID:22257947)
- Report a consanguineous family of Arab Muslim origin with several members displaying a severe form of congenital ichthyosiform erythroderma. Identified a region of homozygosity shared by all patients on 2q34, in a region harbouring the ABCA12 gene. (PMID:23528209)
- ABCA12 mutations result in defective lipid transport via lamellar granules in the keratinocytes, leading to ichthyosis phenotypes from malformation of the stratum corneum lipid barrier. (PMID:23954554)
- Identification of the key promoter element of ABCA12 in this study may provide relevant information for genetic diagnosis of recessive congenital ichthyosis. (PMID:25338618)
- Ssnger sequencing of the parents of neonates deceased patients with Harlequin ichthyosis identified novel mutations in ABCA12 gene. (PMID:25479012)
- Autosomal recessive inheritance of mutations in the ATP-binding cassette, subfamily A, member 12 (ABCA12, OMIM*607800, chromosome 2q35) gene was found to be responsible for the disease. (PMID:25563821)
- we identified three novel mutations and one reported mutation in the TGM1 and ABCA12 genes, respectively, in affected siblings of five Saudi unrelated families (PMID:27061915)
- two missense ABCA12 mutations were uncovered in both of the affected brothers. (PMID:28236338)
- Genes ABCC7, A3, A8, A12, and C8 prevailed among the most upregulated or downregulated ones. In conclusion, the results supported our theory about general adenosine triphosphate-binding cassette gene expression profiles and their importance for cancer on clinical as well as research levels. (PMID:28468577)
- the present study has identified a novel homozygous deleterious intronic variant, which is associated with a severe phenotype of HI. (PMID:29377090)
- Letter: describe ABCA12 mutations in patients with autosomal recessive congenital ichthyosis and report evidence of a founder effect of this mutation in the Spanish population. (PMID:29887490)
- A novel heterozygous missense mutation was identified in ATP-binding cassette sub-family A member 12 (ABCA12) within a family afflicted with keratosis pilaris. In addition, upregulated ABCA12 expression levels in the sebaceous glands of patients with nevus comedonicus were investigated. (PMID:30066947)
- Positive selection in Europeans and East-Asians at the ABCA12 gene. (PMID:30890716)
- A novel pathogenic variant Val1927Leu was identified in a patient with severe harlequin ichthyosis. (PMID:30916489)
- Novel mutations of the ABCA12, KRT1 and ST14 genes in three unrelated newborns showing congenital ichthyosis. (PMID:35964051)
- Mutational Spectrum of the ABCA12 Gene and Genotype-Phenotype Correlation in a Cohort of 64 Patients with Autosomal Recessive Congenital Ichthyosis. (PMID:36980989)
- Long-term survival of harlequin ichthyosis in two siblings with novel ABCA12 mutations. (PMID:37602715)
- Patients with keratinization disorders due to ABCA12 variants showing pityriasis rubra pilaris phenotypes. (PMID:37752865)
- Partial Loss of Function ABCA12 Mutations Generate Reduced Deposition of Glucosyl-Ceramide, Leading to Patchy Ichthyosis and Erythrodermia Resembling Erythrokeratodermia Variabilis et Progressiva (EKVP). (PMID:37762265)
- Novel variants in ABCA12 cause erythrokeratodermia variabilis. (PMID:38085035)
- Erythrokeratodermia Variabilis-like Phenotype in Patients Carrying ABCA12 Mutations. (PMID:38540347)
Cross-species orthologs
15 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | abca12 | ENSDARG00000074749 |
| mus_musculus | Abca12 | ENSMUSG00000050296 |
| rattus_norvegicus | Abca12 | ENSRNOG00000015248 |
| drosophila_melanogaster | Eato | FBGN0028539 |
| drosophila_melanogaster | CG1494 | FBGN0031169 |
| drosophila_melanogaster | Abca3 | FBGN0031170 |
| drosophila_melanogaster | CG1801 | FBGN0031171 |
| drosophila_melanogaster | CG8908 | FBGN0034493 |
| drosophila_melanogaster | CG6052 | FBGN0036747 |
| drosophila_melanogaster | CG31213 | FBGN0051213 |
| drosophila_melanogaster | ldd | FBGN0083956 |
| caenorhabditis_elegans | WBGENE00000019 | |
| caenorhabditis_elegans | abt-2 | WBGENE00000020 |
| caenorhabditis_elegans | WBGENE00000022 | |
| caenorhabditis_elegans | abt-5 | WBGENE00000023 |
Paralogs (11): ABCA7 (ENSG00000064687), ABCA2 (ENSG00000107331), ABCA8 (ENSG00000141338), ABCA9 (ENSG00000154258), ABCA6 (ENSG00000154262), ABCA10 (ENSG00000154263), ABCA5 (ENSG00000154265), ABCA1 (ENSG00000165029), ABCA3 (ENSG00000167972), ABCA13 (ENSG00000179869), ABCA4 (ENSG00000198691)
Protein
Protein identifiers
Glucosylceramide transporter ABCA12 — Q86UK0 (reviewed: Q86UK0)
Alternative names: ATP-binding cassette sub-family A member 12, ATP-binding cassette transporter 12
All UniProt accessions (2): Q86UK0, E9PBK1
UniProt curated annotations — full annotation on UniProt →
Function. Transports lipids such as glucosylceramides from the outer to the inner leaflet of lamellar granules (LGs) membrane, whereby the lipids are finally transported to the keratinocyte periphery via the trans-Golgi network and LGs and released to the apical surface of the granular keratinocytes to form lipid lamellae in the stratum corneum of the epidermis, which is essential for skin barrier function. In the meantime, participates in the transport of the lamellar granules-associated proteolytic enzymes, in turn regulates desquamation and keratinocyte differentiation. Furthermore, is essential for the regulation of cellular cholesterol homeostasis by regulating ABCA1-dependent cholesterol efflux from macrophages through interaction with NR1H2 and ABCA1. Plays pleiotropic roles in regulating glucose stimulated insulin secretion from beta cells, regulating the morphology and fusion of insulin granules, lipid raft abundance and the actin cytoskeleton. Also involved in lung surfactant biogenesis.
Subunit / interactions. Interacts with NR1H2 and ABCA1; this interaction is required for ABCA1 localization to the cell surface and is necessary for its normal activity and stability.
Subcellular location. Cytoplasmic vesicle. Secretory vesicle membrane. Golgi apparatus membrane.
Tissue specificity. Mainly expressed in the stomach, placenta, testis and fetal brain. Expressed in the upper epidermal layers, mainly the granular layers, of skin. Expressed throughout the normal interfollicular epidermis with prominent expression in the stratum granulosum. Expressed in alpha and beta cells of pancreatic islets.
Disease relevance. Ichthyosis, congenital, autosomal recessive 4A (ARCI4A) [MIM:601277] A form of autosomal recessive congenital ichthyosis, a disorder of keratinization with abnormal differentiation and desquamation of the epidermis, resulting in abnormal skin scaling over the whole body. The main skin phenotypes are lamellar ichthyosis (LI) and non-bullous congenital ichthyosiform erythroderma (NCIE), although phenotypic overlap within the same patient or among patients from the same family can occur. Lamellar ichthyosis is a condition often associated with an embedment in a collodion-like membrane at birth; skin scales later develop, covering the entire body surface. Non-bullous congenital ichthyosiform erythroderma characterized by fine whitish scaling on an erythrodermal background; larger brownish scales are present on the buttocks, neck and legs. The disease is caused by variants affecting the gene represented in this entry. Ichthyosis, congenital, autosomal recessive 4B (ARCI4B) [MIM:242500] A rare, very severe form of congenital ichthyosis, in which the neonate is born with a thick covering of armor-like scales. The skin dries out to form hard diamond-shaped plaques separated by fissures, resembling ‘armor plating’. The normal facial features are severely affected, with distortion of the lips (eclabion), eyelids (ectropion), ears, and nostrils. Affected babies are often born prematurely and rarely survive the perinatal period. Babies who survive into infancy and beyond develop skin changes resembling severe non-bullous congenital ichthyosiform erythroderma. The disease is caused by variants affecting the gene represented in this entry.
Domain organisation. Multifunctional polypeptide with two homologous halves, each containing a hydrophobic membrane-anchoring domain and an ATP binding cassette (ABC) domain.
Induction. Up-regulated during keratinization. Up-regulated after 15 weeks estimated gestational age (EGA). Highly up-regulated by PPARG activators such as ciglitazone, troglitazone, and the PPARD activator GW 0742 in time- and dose-dependent manner but independently of keratinocyte differentiation. In addition, modestly up-regulated by the NR1H3 and NR1H2 activator TO901317 in an keratinocyte differentiation-independent manner. Up-regulated by N-(hexanoyl)sphing-4-enine in a time- and dose-dependent manner or by glucosyltransferase inhibitors, ceramidase inhibitors and sphingomyelin synthase inhibitors that increase endogenous ceramide levels and induce ABCA12 expression via the PPARD signaling pathway. Up-regulated by N-acetylsphingosine in a time- and dose-dependent manner via the PPARD signaling pathway.
Similarity. Belongs to the ABC transporter superfamily. ABCA family.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q86UK0-1 | 1 | yes |
| Q86UK0-2 | 2 |
RefSeq proteins (2): NP_056472, NP_775099* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR003439 | ABC_transporter-like_ATP-bd | Domain |
| IPR003593 | AAA+_ATPase | Domain |
| IPR013525 | ABC2_TM | Domain |
| IPR017871 | ABC_transporter-like_CS | Conserved_site |
| IPR026082 | ABCA | Family |
| IPR027417 | P-loop_NTPase | Homologous_superfamily |
| IPR056264 | R2_ABCA1-4-like | Domain |
Pfam: PF00005, PF12698, PF23321
Catalyzed reactions (Rhea), 1 shown:
- a beta-D-glucosylceramide(in) + ATP + H2O = a beta-D-glucosylceramide(out) + ADP + phosphate + H(+) (RHEA:66660)
UniProt features (91 total): glycosylation site 35, sequence variant 29, transmembrane region 14, sequence conflict 4, domain 2, binding site 2, splice variant 2, chain 1, region of interest 1, compositionally biased region 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q86UK0-F1 | 68.32 | 0.04 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Ligand- & substrate-binding residues (2): 1378–1385; 2290–2297
Glycosylation sites (35): 156, 174, 214, 275, 333, 367, 383, 412, 435, 528, 543, 577, 608, 623, 648, 752, 826, 920, 963, 1170 …
Function
Pathways and Gene Ontology
Reactome pathways
7 pathways
| ID | Pathway |
|---|---|
| R-HSA-1369062 | ABC transporters in lipid homeostasis |
| R-HSA-5682294 | Defective ABCA12 causes ARCI4B |
| R-HSA-1643685 | Disease |
| R-HSA-382551 | Transport of small molecules |
| R-HSA-382556 | ABC-family protein mediated transport |
| R-HSA-5619084 | ABC transporter disorders |
| R-HSA-5619115 | Disorders of transmembrane transporters |
MSigDB gene sets: 349 (showing top):
GOBP_EPITHELIUM_DEVELOPMENT, GOBP_INTRACELLULAR_PROTEIN_TRANSPORT, XU_GH1_AUTOCRINE_TARGETS_UP, GOBP_REGULATION_OF_EPIDERMIS_DEVELOPMENT, GOBP_EPITHELIAL_CELL_DEVELOPMENT, JAEGER_METASTASIS_DN, GOCC_SECRETORY_GRANULE, GOBP_INSULIN_SECRETION, GOZGIT_ESR1_TARGETS_DN, GOBP_CELLULAR_RESPONSE_TO_CARBOHYDRATE_STIMULUS, GOBP_POSITIVE_REGULATION_OF_PROTEIN_LOCALIZATION, GOBP_POSITIVE_REGULATION_OF_CHOLESTEROL_EFFLUX, GOBP_REGULATION_OF_CHOLESTEROL_EFFLUX, GOBP_POSITIVE_REGULATION_OF_PROTEIN_LOCALIZATION_TO_CELL_SURFACE, GOBP_REGULATION_OF_HORMONE_LEVELS
GO Biological Process (26): corneocyte desquamation (GO:0003336), ceramide metabolic process (GO:0006672), lipid transport (GO:0006869), intracellular protein transport (GO:0006886), positive regulation of cholesterol efflux (GO:0010875), cellular homeostasis (GO:0019725), keratinization (GO:0031424), positive regulation of intracellular lipid transport (GO:0032379), secretion by cell (GO:0032940), cholesterol efflux (GO:0033344), phospholipid efflux (GO:0033700), ceramide transport (GO:0035627), surfactant homeostasis (GO:0043129), regulated exocytosis (GO:0045055), regulation of keratinocyte differentiation (GO:0045616), lung alveolus development (GO:0048286), lipid homeostasis (GO:0055088), regulation of insulin secretion involved in cellular response to glucose stimulus (GO:0061178), establishment of skin barrier (GO:0061436), protein localization to plasma membrane (GO:0072659), positive regulation of protein localization to cell surface (GO:2000010), keratinocyte differentiation (GO:0030216), positive regulation of cholesterol transport (GO:0032376), lipid translocation (GO:0034204), establishment of localization in cell (GO:0051649), transmembrane transport (GO:0055085)
GO Molecular Function (11): signaling receptor binding (GO:0005102), lipid carrier activity (GO:0005319), ATP binding (GO:0005524), ATP hydrolysis activity (GO:0016887), ATPase-coupled lipid transmembrane transporter activity (GO:0034040), apolipoprotein A-I receptor binding (GO:0034191), ATPase-coupled transmembrane transporter activity (GO:0042626), ATPase-coupled intramembrane lipid carrier activity (GO:0140326), ABC-type transporter activity (GO:0140359), nucleotide binding (GO:0000166), protein binding (GO:0005515)
GO Cellular Component (11): Golgi membrane (GO:0000139), cytoplasm (GO:0005737), cytosol (GO:0005829), plasma membrane (GO:0005886), membrane (GO:0016020), transport vesicle membrane (GO:0030658), epidermal lamellar body (GO:0097209), epidermal lamellar body membrane (GO:0097234), Golgi apparatus (GO:0005794), secretory granule membrane (GO:0030667), cytoplasmic vesicle (GO:0031410)
Reactome top-level categories
Rollup of top-5 pathways:
| Category | Pathways |
|---|---|
| ABC-family protein mediated transport | 1 |
| ABC transporter disorders | 1 |
| Transport of small molecules | 1 |
| Disorders of transmembrane transporters | 1 |
| Disease | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| ATP-dependent activity | 3 |
| bounding membrane of organelle | 3 |
| cellular anatomical structure | 3 |
| cytoplasm | 3 |
| keratinocyte differentiation | 2 |
| ATPase-coupled transmembrane transporter activity | 2 |
| cytoplasmic vesicle membrane | 2 |
| corneocyte development | 1 |
| delamination | 1 |
| sphingolipid metabolic process | 1 |
| transport | 1 |
| lipid localization | 1 |
| intracellular protein localization | 1 |
| protein transport | 1 |
| intracellular transport | 1 |
| regulation of cholesterol efflux | 1 |
| positive regulation of cholesterol transport | 1 |
| cholesterol efflux | 1 |
| homeostatic process | 1 |
| multicellular organismal process | 1 |
| intracellular lipid transport | 1 |
| positive regulation of lipid transport | 1 |
| regulation of intracellular lipid transport | 1 |
| positive regulation of intracellular transport | 1 |
| secretion | 1 |
| export from cell | 1 |
| cholesterol transport | 1 |
| phospholipid transport | 1 |
| lipid transport | 1 |
| nitrogen compound transport | 1 |
| multicellular organismal-level chemical homeostasis | 1 |
| exocytosis | 1 |
| regulation of epidermal cell differentiation | 1 |
| lung development | 1 |
| anatomical structure development | 1 |
| chemical homeostasis | 1 |
| insulin secretion involved in cellular response to glucose stimulus | 1 |
| regulation of insulin secretion | 1 |
| regulation of cellular localization | 1 |
| skin epidermis development | 1 |
Protein interactions and networks
STRING
1110 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| ABCA12 | CYP4F22 | Q6NT55 | 977 |
| ABCA12 | TGM1 | P22735 | 951 |
| ABCA12 | NIPAL4 | Q0D2K0 | 920 |
| ABCA12 | LIPN | Q5VXI9 | 829 |
| ABCA12 | CST6 | Q15828 | 813 |
| ABCA12 | ALOX12B | O75342 | 794 |
| ABCA12 | ALOXE3 | Q9BYJ1 | 794 |
| ABCA12 | PNPLA1 | Q8N8W4 | 784 |
| ABCA12 | CERS3 | Q8IU89 | 709 |
| ABCA12 | LORICRIN | P23490 | 658 |
| ABCA12 | FLG | P20930 | 633 |
| ABCA12 | SDR9C7 | Q8NEX9 | 631 |
| ABCA12 | FLG2 | Q5D862 | 616 |
| ABCA12 | TINCR | A0A2R8Y7D0 | 560 |
| ABCA12 | ABCD4 | O14678 | 554 |
IntAct
11 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| ABCA1 | ABCA12 | psi-mi:“MI:0403”(colocalization) | 0.590 |
| ABCA12 | ABCA1 | psi-mi:“MI:0915”(physical association) | 0.590 |
| ABCA12 | ABCA1 | psi-mi:“MI:2364”(proximity) | 0.590 |
| NR1H2 | ABCA1 | psi-mi:“MI:0914”(association) | 0.420 |
| NEK4 | E2F8 | psi-mi:“MI:0914”(association) | 0.350 |
| M | psi-mi:“MI:0914”(association) | 0.350 | |
| BMI1 | MEIS3P1 | psi-mi:“MI:0914”(association) | 0.350 |
| MBNL1 | A2ML1 | psi-mi:“MI:0914”(association) | 0.350 |
| SMPD2 | A2ML1 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (16): ABCA12 (Protein-RNA), ABCA12 (Affinity Capture-MS), ABCA12 (Affinity Capture-MS), ABCA12 (Affinity Capture-MS), ABCA12 (Affinity Capture-MS), ABCA12 (Synthetic Lethality), ABCA12 (Proximity Label-MS), ABCA12 (Proximity Label-MS), ABCA12 (Proximity Label-MS), GATAD2B (Cross-Linking-MS (XL-MS)), HDAC1 (Cross-Linking-MS (XL-MS)), EEA1 (Cross-Linking-MS (XL-MS)), ABCA12 (Affinity Capture-MS), ABCA12 (Proximity Label-MS), ABCA12 (Proximity Label-MS)
ESM2 similar proteins: A0JPP4, A6H7F9, A7WNB0, C0HMB7, C6KI89, E9Q355, E9Q876, F5HGK9, O36397, O75969, O77797, P01586, P03319, P04823, P06740, P14683, P25140, P28907, Q00997, Q02484, Q15846, Q2TAV2, Q2YDM0, Q3TBN1, Q3ZRW6, Q3ZRW7, Q3ZRW9, Q499E0, Q5BK38, Q5BKX0, Q5CCK0, Q5RBQ2, Q5RDR5, Q5RII3, Q5SSE9, Q5VAN0, Q68FB2, Q6AY76, Q6DFY8, Q6UWF9
Diamond homologs: A0A0G2K1Q8, C0SPB4, E9PU17, E9PX95, E9Q876, F1MWM0, O35600, O52618, O95477, P08720, P0A9U1, P0A9U2, P0DXG8, P0DXU5, P0DXU7, P19844, P22040, P23703, P26050, P30750, P32010, P36879, P37624, P41233, P41234, P44785, P50332, P54592, P55476, P63355, P63356, P70970, P72335, P78363, P94374, P94440, Q05067, Q0I5E9, Q0TLD2, Q13ZJ1
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
1807 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 110 |
| Likely pathogenic | 89 |
| Uncertain significance | 422 |
| Likely benign | 907 |
| Benign | 105 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1385145 | NM_173076.3(ABCA12):c.1210C>T (p.Arg404Ter) | Pathogenic |
| 1526238 | NM_173076.3(ABCA12):c.4540C>T (p.Arg1514Cys) | Pathogenic |
| 152738 | GRCh38/hg38 2q32.3-35(chr2:192938826-215705052)x1 | Pathogenic |
| 1686889 | NM_173076.3(ABCA12):c.3656C>T (p.Ala1219Val) | Pathogenic |
| 1693261 | NM_173076.3(ABCA12):c.7344-1G>C | Pathogenic |
| 1997979 | NM_173076.3(ABCA12):c.2946del (p.Lys982fs) | Pathogenic |
| 2094179 | NM_173076.3(ABCA12):c.5963del (p.Ile1987_Leu1988insTer) | Pathogenic |
| 2096804 | NM_173076.3(ABCA12):c.6167dup (p.Lys2057fs) | Pathogenic |
| 2203257 | NM_173076.3(ABCA12):c.5848C>T (p.Arg1950Ter) | Pathogenic |
| 2203258 | NM_173076.3(ABCA12):c.3666C>A (p.Tyr1222Ter) | Pathogenic |
| 2427498 | NC_000002.11:g.(?215917191)(215919408_?)del | Pathogenic |
| 2434711 | NM_173076.3(ABCA12):c.5641C>T (p.Arg1881Ter) | Pathogenic |
| 2505564 | NM_173076.3(ABCA12):c.5469_5472del | Pathogenic |
| 2506520 | NM_173076.3(ABCA12):c.5046_5050del (p.Lys1682fs) | Pathogenic |
| 264997 | NM_173076.3(ABCA12):c.178C>T (p.Arg60Ter) | Pathogenic |
| 264999 | NM_173076.3(ABCA12):c.859C>T (p.Arg287Ter) | Pathogenic |
| 265000 | NM_173076.3(ABCA12):c.1300C>T (p.Arg434Ter) | Pathogenic |
| 265001 | NM_173076.3(ABCA12):c.2140C>T (p.Arg714Ter) | Pathogenic |
| 265004 | NM_173076.3(ABCA12):c.3256A>T (p.Lys1086Ter) | Pathogenic |
| 265005 | NM_173076.3(ABCA12):c.3889C>T (p.Arg1297Ter) | Pathogenic |
| 2699455 | NM_173076.3(ABCA12):c.5607C>G (p.Tyr1869Ter) | Pathogenic |
| 2703432 | NM_173076.3(ABCA12):c.4119del (p.Thr1374fs) | Pathogenic |
| 2703892 | NM_173076.3(ABCA12):c.5641del (p.Arg1881fs) | Pathogenic |
| 2705444 | NM_173076.3(ABCA12):c.6037C>T (p.Gln2013Ter) | Pathogenic |
| 2708066 | NM_173076.3(ABCA12):c.5446_5447del (p.Met1816fs) | Pathogenic |
| 2718324 | NM_173076.3(ABCA12):c.2394G>A (p.Trp798Ter) | Pathogenic |
| 2727250 | NM_173076.3(ABCA12):c.3908_3911dup (p.Lys1304fs) | Pathogenic |
| 2734375 | NM_173076.3(ABCA12):c.6858del (p.Phe2286fs) | Pathogenic |
| 2734376 | NM_173076.3(ABCA12):c.4543C>T (p.Arg1515Ter) | Pathogenic |
| 2734377 | NM_173076.3(ABCA12):c.3673C>T (p.Arg1225Ter) | Pathogenic |
SpliceAI
6964 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 2:214934073:CTTAC:C | donor_loss | 1.0000 |
| 2:214934074:TTACC:T | donor_loss | 1.0000 |
| 2:214934077:C:CA | donor_loss | 1.0000 |
| 2:214934077:CCT:C | donor_gain | 1.0000 |
| 2:214934211:TGATC:T | acceptor_gain | 1.0000 |
| 2:214934212:GATC:G | acceptor_gain | 1.0000 |
| 2:214934212:GATCC:G | acceptor_gain | 1.0000 |
| 2:214934213:ATC:A | acceptor_gain | 1.0000 |
| 2:214934213:ATCCT:A | acceptor_gain | 1.0000 |
| 2:214934214:TC:T | acceptor_gain | 1.0000 |
| 2:214934214:TCCTG:T | acceptor_gain | 1.0000 |
| 2:214934215:CCTG:C | acceptor_gain | 1.0000 |
| 2:214934215:CCTGT:C | acceptor_gain | 1.0000 |
| 2:214934216:C:CA | acceptor_loss | 1.0000 |
| 2:214934216:C:CC | acceptor_gain | 1.0000 |
| 2:214934216:C:T | acceptor_gain | 1.0000 |
| 2:214934218:G:C | acceptor_gain | 1.0000 |
| 2:214934218:G:GC | acceptor_gain | 1.0000 |
| 2:214934226:C:CT | acceptor_gain | 1.0000 |
| 2:214934226:C:T | acceptor_gain | 1.0000 |
| 2:214934227:A:T | acceptor_gain | 1.0000 |
| 2:214937506:TTACT:T | donor_loss | 1.0000 |
| 2:214937507:TAC:T | donor_loss | 1.0000 |
| 2:214937508:A:AC | donor_gain | 1.0000 |
| 2:214937508:ACTTT:A | donor_loss | 1.0000 |
| 2:214937509:C:CT | donor_gain | 1.0000 |
| 2:214937611:CAAAC:C | acceptor_gain | 1.0000 |
| 2:214937613:AAC:A | acceptor_gain | 1.0000 |
| 2:214937614:AC:A | acceptor_gain | 1.0000 |
| 2:214937615:CC:C | acceptor_gain | 1.0000 |
AlphaMissense
17146 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 2:214937595:A:T | V2486D | 1.000 |
| 2:214942930:C:A | K2477N | 1.000 |
| 2:214942930:C:G | K2477N | 1.000 |
| 2:214945059:A:G | W2429R | 1.000 |
| 2:214945059:A:T | W2429R | 1.000 |
| 2:214945061:A:G | L2428P | 1.000 |
| 2:214945093:G:C | S2417R | 1.000 |
| 2:214945093:G:T | S2417R | 1.000 |
| 2:214945095:T:G | S2417R | 1.000 |
| 2:214945097:G:C | P2416R | 1.000 |
| 2:214945097:G:T | P2416Q | 1.000 |
| 2:214945100:T:A | E2415V | 1.000 |
| 2:214947473:T:A | R2396S | 1.000 |
| 2:214947473:T:G | R2396S | 1.000 |
| 2:214947474:C:G | R2396T | 1.000 |
| 2:214947483:C:T | G2393D | 1.000 |
| 2:214948686:C:A | Q2338H | 1.000 |
| 2:214948686:C:G | Q2338H | 1.000 |
| 2:214949126:A:C | N2292K | 1.000 |
| 2:214949126:A:T | N2292K | 1.000 |
| 2:214949133:C:T | G2290E | 1.000 |
| 2:214949134:C:G | G2290R | 1.000 |
| 2:214949134:C:T | G2290R | 1.000 |
| 2:214949139:A:G | L2288P | 1.000 |
| 2:214980502:A:G | L1574P | 1.000 |
| 2:214980580:G:T | A1548D | 1.000 |
| 2:214980586:C:G | R1546P | 1.000 |
| 2:214980591:A:C | S1544R | 1.000 |
| 2:214980591:A:T | S1544R | 1.000 |
| 2:214980593:T:G | S1544R | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000025382 (2:215132647 T>C), RS1000049903 (2:215011248 C>T), RS1000056770 (2:215132333 G>A,T), RS1000068243 (2:215000946 C>T), RS1000078845 (2:214952492 A>G), RS1000086849 (2:215000323 G>C), RS1000102250 (2:214965520 CTTAAA>C), RS1000125835 (2:215103507 T>C), RS1000142296 (2:215048595 C>A,T), RS1000158051 (2:215054851 T>C), RS1000159410 (2:214958092 C>T), RS1000161150 (2:214979613 C>T), RS1000176241 (2:215055753 A>C), RS1000179206 (2:215041551 C>A), RS1000225019 (2:215066904 G>C)
Disease associations
OMIM: gene MIM:607800 | disease phenotypes: MIM:601277, MIM:242500, MIM:114480
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| autosomal recessive congenital ichthyosis 4B | Definitive | Autosomal recessive |
| autosomal recessive congenital ichthyosis 4A | Strong | Autosomal recessive |
| autosomal recessive congenital ichthyosis | Strong | Autosomal recessive |
| lamellar ichthyosis | Supportive | Autosomal recessive |
| congenital non-bullous ichthyosiform erythroderma | Supportive | Autosomal recessive |
Mondo (8): autosomal recessive congenital ichthyosis 4A (MONDO:0011026), autosomal recessive congenital ichthyosis 4B (MONDO:0009443), lamellar ichthyosis (MONDO:0017778), breast ductal adenocarcinoma (MONDO:0005590), hereditary breast carcinoma (MONDO:0016419), ichthyosis (MONDO:0019269), congenital non-bullous ichthyosiform erythroderma (MONDO:0019306), autosomal recessive congenital ichthyosis (MONDO:0017265)
Orphanet (4): Lamellar ichthyosis (Orphanet:313), Harlequin ichthyosis (Orphanet:457), Hereditary breast cancer (Orphanet:227535), Ichthyosis (Orphanet:79354)
HPO phenotypes
54 total (30 of 54 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000083 | Renal insufficiency |
| HP:0000164 | Abnormality of the dentition |
| HP:0000232 | Everted lower lip vermilion |
| HP:0000364 | Hearing abnormality |
| HP:0000365 | Hearing impairment |
| HP:0000389 | Chronic otitis media |
| HP:0000457 | Depressed nasal ridge |
| HP:0000491 | Keratitis |
| HP:0000518 | Cataract |
| HP:0000520 | Proptosis |
| HP:0000656 | Ectropion |
| HP:0000958 | Dry skin |
| HP:0000962 | Hyperkeratosis |
| HP:0000966 | Hypohidrosis |
| HP:0000982 | Palmoplantar keratoderma |
| HP:0000989 | Pruritus |
| HP:0001019 | Erythroderma |
| HP:0001161 | Hand polydactyly |
| HP:0001217 | Clubbing |
| HP:0001258 | Spastic paraplegia |
| HP:0001270 | Motor delay |
| HP:0001376 | Limitation of joint mobility |
| HP:0001433 | Hepatosplenomegaly |
| HP:0001508 | Failure to thrive |
| HP:0001522 | Death in infancy |
| HP:0001596 | Alopecia |
| HP:0001597 | Abnormal nail morphology |
| HP:0001622 | Premature birth |
| HP:0001645 | Sudden cardiac death |
GWAS associations
0 associations (top):
MeSH disease descriptors (4)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D018270 | Carcinoma, Ductal, Breast | C04.557.470.200.025.232.500; C04.557.470.615.132.500; C04.588.180.390; C17.800.090.500.390 |
| D007057 | Ichthyosis | C16.131.831.512; C16.614.492; C17.800.428.333; C17.800.804.512 |
| C562840 | Breast Cancer, Familial (supp.) | |
| C537264 | Lamellar ichthyosis, type 2 (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
PharmGKB variants
2 variants.
| Variant | Genes | Level | Score | #Clin annots | Drugs |
|---|---|---|---|---|---|
| rs2888327 | ABCA12 | 0.00 | 0 | ||
| rs10182702 | ABCA12 | 0.00 | 0 |
GtoPdb / IUPHAR curated pharmacology
(IUPHAR/BPS Guide to Pharmacology — expert-curated)
Target class: transporter — ABCA subfamily
CTD chemical–gene interactions
49 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Benzo(a)pyrene | affects methylation, increases expression | 5 |
| Aflatoxin B1 | affects expression, decreases methylation, increases expression | 4 |
| sodium arsenite | decreases methylation, increases expression | 3 |
| Estradiol | decreases expression, affects cotreatment | 3 |
| Tetrachlorodibenzodioxin | decreases expression, increases expression, affects cotreatment | 3 |
| bisphenol A | increases methylation, affects cotreatment, decreases methylation, decreases expression | 2 |
| Tobacco Smoke Pollution | affects expression, increases expression | 2 |
| Vincristine | decreases response to substance, increases expression | 2 |
| Cadmium Chloride | decreases expression, increases expression | 2 |
| aristolochic acid I | decreases expression | 1 |
| sodium arsenate | decreases expression, increases abundance | 1 |
| arsenite | increases expression | 1 |
| butyraldehyde | decreases expression | 1 |
| S-(1,2-dichlorovinyl)cysteine | increases expression, affects cotreatment, affects response to substance | 1 |
| avobenzone | decreases expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| perfluoro-n-nonanoic acid | increases expression | 1 |
| nutlin 3 | affects cotreatment, increases expression | 1 |
| 2-(1H-indazol-4-yl)-6-(4-methanesulfonylpiperazin-1-ylmethyl)-4-morpholin-4-ylthieno(3,2-d)pyrimidine | increases expression, increases response to substance | 1 |
| jinfukang | affects cotreatment, increases expression, decreases expression | 1 |
| Docetaxel | affects expression, decreases response to substance | 1 |
| Zoledronic Acid | increases expression | 1 |
| Fulvestrant | affects cotreatment, decreases methylation | 1 |
| Acetaminophen | decreases expression | 1 |
| Air Pollutants | decreases expression | 1 |
| Allergens | increases expression | 1 |
| Amphotericin B | decreases expression | 1 |
| Arsenic | decreases expression, increases abundance | 1 |
| Atrazine | increases expression | 1 |
| Benzalkonium Compounds | increases expression | 1 |
Clinical trials (associated diseases)
49 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT04996485 | PHASE4 | UNKNOWN | Scientific Substantiation and Assessment of the Effectiveness of Pathogenetic Methods of Therapy for Congenital Ichthyosis in Children |
| NCT01222000 | PHASE3 | UNKNOWN | Treatment of the Recessive Nonbullous Congenital Ichthyosis by the Epigallocatechine Cutaneous |
| NCT03414970 | PHASE3 | ACTIVE_NOT_RECRUITING | Hypofractionated Radiation Therapy After Mastectomy in Preventing Recurrence in Patients With Stage IIa-IIIa Breast Cancer |
| NCT00004690 | PHASE3 | COMPLETED | Phase III Study of Monolaurin Cream Therapy for Patients With Congenital Ichthyosis |
| NCT05295732 | PHASE3 | COMPLETED | The ASCEND Study: Evaluating TMB-001 in the Treatment of RXLI or ARCI Ichthyosis |
| NCT03041038 | PHASE2 | COMPLETED | The Efficacy and Safety of Secukinumab in Patients With Ichthyoses |
| NCT03738800 | PHASE2 | TERMINATED | A Safety, Efficacy and Systemic Exposure Study of CD5789 Cream in Adults and Adolescents With Lamellar Ichthyosis |
| NCT00461344 | PHASE2 | TERMINATED | Docetaxel + Doxorubicin as Neoadjuvant Chemotherapy in Patients With Breast Cancer |
| NCT07499999 | PHASE2 | NOT_YET_RECRUITING | Randomized Double-Blind Phase II Trial of Baby Exemestane Versus Baby Tamoxifen in Post-Menopausal Women at High Risk for Breast Cancer |
| NCT02864082 | PHASE2 | COMPLETED | A Safety and Tolerability Study of Topical PAT-001 in Congenital Ichthyosis |
| NCT04154293 | PHASE2 | COMPLETED | A Vehicle Controlled Study to Evaluate Safety and Efficacy of Topical TMB-001 for Treatment of Congenital Ichthyosis |
| NCT04697056 | PHASE2 | TERMINATED | A Study to Evaluate the Efficacy and Safety of Imsidolimab (ANB019) in the Treatment of Participants With Ichthyosis |
| NCT06136403 | PHASE2 | RECRUITING | A 44-week Monocentric Open Study Assessing the Efficacy and Safety of Deucravacitinib in Adults With Inflammatory Genodermatoses |
| NCT06362447 | PHASE2 | NOT_YET_RECRUITING | Efficacy of Injectable Gentamicin in Hereditary Ichthyosis |
| NCT00001292 | Not specified | COMPLETED | Study of Scaling Disorders and Other Inherited Skin Diseases |
| NCT05312073 | Not specified | COMPLETED | Study of in Vivo and in Vitro Transcriptomic and Proteomic Signatures in Unhereditary Ichtyosis |
| NCT00637364 | PHASE1/PHASE2 | SUSPENDED | High Intensity Focused Ultrasound Tumor Treatment for Pancreatic Cancer Pain |
| NCT02779855 | PHASE1/PHASE2 | COMPLETED | Talimogene Laherparepvec in Combination With Neoadjuvant Chemotherapy in Triple Negative Breast Cancer |
| NCT01753908 | EARLY_PHASE1 | COMPLETED | Broccoli Sprout Extract in Treating Patients With Breast Cancer |
| NCT01796041 | EARLY_PHASE1 | COMPLETED | Intraoperative Imaging of Breast Cancer With Indocyanine Green |
| NCT01208974 | Not specified | ACTIVE_NOT_RECRUITING | Nipple-Areola Complex (NAC) Irradiation After Nipple-Sparing Mastectomy and Reconstruction |
| NCT01875198 | Not specified | TERMINATED | Oncologic Impact of Splenectomy-omitting Radical Pancreatectomy in Well-selected Left-sided Pancreatic Cancer |
| NCT03543397 | Not specified | UNKNOWN | MRI in Ductal Carcinoma in Situ (DCIS) |
| NCT03834532 | Not specified | COMPLETED | Living Well After Breast Surgery |
| NCT00040222 | Not specified | COMPLETED | Clinical, Genetic, Behavioral, Laboratory and Epidemiologic Characterization of Individuals and Families at High Risk of Breast/Ovarian Cancer |
| NCT02557776 | Not specified | COMPLETED | Written Genetic Counseling and Mutation Analysis of BRCA1 and BRCA2 to Patients With Breast Cancer |
| NCT03495544 | Not specified | UNKNOWN | Study Estimating Association Between Germline Mutations and PD-L1 Expression in Breast Cancer |
| NCT03959267 | Not specified | COMPLETED | Testing a Culturally Adapted Telephone Genetic Counseling Intervention |
| NCT04058418 | Not specified | COMPLETED | Specialist Recommendation on FBC (Familial Breast Cancer) Chemoprevention Prescribing |
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Related Atlas pages
- Associated diseases: autosomal recessive congenital ichthyosis 4B, autosomal recessive congenital ichthyosis 4A, lamellar ichthyosis, congenital non-bullous ichthyosiform erythroderma, autosomal recessive congenital ichthyosis
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): autosomal recessive congenital ichthyosis, autosomal recessive congenital ichthyosis 4A, autosomal recessive congenital ichthyosis 4B, breast ductal adenocarcinoma, congenital non-bullous ichthyosiform erythroderma, hereditary breast carcinoma, ichthyosis, lamellar ichthyosis