ABCA9-AS1

Summary

ABCA9-AS1 (ABCA9 antisense RNA 1, HGNC:39983) is a long non-coding RNA gene on chromosome 17q24.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:39983
Approved symbol	ABCA9-AS1
Name	ABCA9 antisense RNA 1
Location	17q24.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000231749
Ensembl biotype	lncRNA
Entrez	104355297
RNAcentral	URS000018F63F — lncRNA, 523 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 8 — 8 lncRNA

ENST00000458677, ENST00000627453, ENST00000627596, ENST00000627957, ENST00000629311, ENST00000630575, ENST00000630625, ENST00000755099

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000458677 — 4 exons

Exon	Start	End
ENSE00001641943	69011983	69012103
ENSE00001699471	69018104	69018323
ENSE00001726697	69004714	69004793
ENSE00001755912	69012252	69012353

Expression profiles

Bgee: expression breadth ubiquitous, 124 present calls, max score 89.58.

Top tissues by expression

124 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	89.58	gold quality
sural nerve	UBERON:0015488	80.91	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	79.73	gold quality
colonic epithelium	UBERON:0000397	74.24	gold quality
tonsil	UBERON:0002372	73.52	gold quality
spleen	UBERON:0002106	72.94	gold quality
calcaneal tendon	UBERON:0003701	72.30	gold quality
ventricular zone	UBERON:0003053	70.34	gold quality
corpus callosum	UBERON:0002336	69.85	gold quality
tibial nerve	UBERON:0001323	67.51	gold quality
skeletal muscle tissue	UBERON:0001134	66.27	gold quality
bone marrow cell	CL:0002092	65.79	silver quality
subcutaneous adipose tissue	UBERON:0002190	64.08	gold quality
adrenal tissue	UBERON:0018303	63.95	gold quality
left ovary	UBERON:0002119	63.81	gold quality
hindlimb stylopod muscle	UBERON:0004252	63.68	gold quality
ovary	UBERON:0000992	63.27	gold quality
urinary bladder	UBERON:0001255	62.86	gold quality
adipose tissue	UBERON:0001013	62.72	gold quality
right ovary	UBERON:0002118	62.00	gold quality
bone marrow	UBERON:0002371	61.60	gold quality
right atrium auricular region	UBERON:0006631	61.39	gold quality
placenta	UBERON:0001987	61.35	gold quality
omental fat pad	UBERON:0010414	61.28	gold quality
liver	UBERON:0002107	61.07	gold quality
saliva-secreting gland	UBERON:0001044	60.99	gold quality
heart	UBERON:0000948	59.77	gold quality
thoracic mammary gland	UBERON:0005200	59.66	gold quality
minor salivary gland	UBERON:0001830	59.10	gold quality
smooth muscle tissue	UBERON:0001135	58.99	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	7.91

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.