ABCB4
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Also known as MDR2PFIC-3GBD1
Summary
ABCB4 (ATP binding cassette subfamily B member 4, HGNC:45) is a protein-coding gene on chromosome 7q21.12, encoding Phosphatidylcholine translocator ABCB4 (P21439). Energy-dependent phospholipid efflux translocator that acts as a positive regulator of biliary lipid secretion. It is haploinsufficient (ClinGen: sufficient evidence).
The membrane-associated protein encoded by this gene is a member of the superfamily of ATP-binding cassette (ABC) transporters. ABC proteins transport various molecules across extra- and intra-cellular membranes. ABC genes are divided into seven distinct subfamilies (ABC1, MDR/TAP, MRP, ALD, OABP, GCN20, White). This protein is a member of the MDR/TAP subfamily. Members of the MDR/TAP subfamily are involved in multidrug resistance as well as antigen presentation. This gene encodes a full transporter and member of the p-glycoprotein family of membrane proteins with phosphatidylcholine as its substrate. The function of this protein has not yet been determined; however, it may involve transport of phospholipids from liver hepatocytes into bile. Alternative splicing of this gene results in several products of undetermined function.
Source: NCBI Gene 5244 — RefSeq curated summary.
At a glance
- Gene–disease (curated): progressive familial intrahepatic cholestasis type 3 (Definitive, ClinGen) — +3 more curated relationships
- GWAS associations: 18
- Clinical variants (ClinVar): 1,570 total — 155 pathogenic, 66 likely-pathogenic
- Phenotypes (HPO): 62
- Druggable target: yes — 1 molecules with ChEMBL bioactivity
- Dosage sensitivity (ClinGen): haploinsufficiency sufficient evidence, triplosensitivity no evidence
- MANE Select transcript:
NM_000443
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:45 |
| Approved symbol | ABCB4 |
| Name | ATP binding cassette subfamily B member 4 |
| Location | 7q21.12 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | MDR2, PFIC-3, GBD1 |
| Ensembl gene | ENSG00000005471 |
| Ensembl biotype | protein_coding |
| OMIM | 171060 |
| Entrez | 5244 |
Gene structure
Transcript identifiers
Ensembl transcripts: 36 — 30 protein_coding, 4 retained_intron, 2 nonsense_mediated_decay
ENST00000265723, ENST00000359206, ENST00000417608, ENST00000440025, ENST00000453593, ENST00000467079, ENST00000467983, ENST00000469770, ENST00000473795, ENST00000643670, ENST00000644106, ENST00000649586, ENST00000866020, ENST00000866021, ENST00000866022, ENST00000866023, ENST00000866024, ENST00000866025, ENST00000866026, ENST00000866027, ENST00000866028, ENST00000866029, ENST00000866030, ENST00000866031, ENST00000866032, ENST00000866033, ENST00000866034, ENST00000866035, ENST00000939426, ENST00000964815, ENST00000964816, ENST00000964817, ENST00000964818, ENST00000964819, ENST00000964820, ENST00000964821
RefSeq mRNA: 3 — MANE Select: NM_000443
NM_000443, NM_018849, NM_018850
CCDS: CCDS5605, CCDS5606, CCDS5607
Canonical transcript exons
ENST00000649586 — 28 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000454292 | 87413617 | 87413717 |
| ENSE00000454307 | 87406288 | 87406494 |
| ENSE00000703052 | 87452944 | 87453135 |
| ENSE00000703103 | 87451623 | 87451794 |
| ENSE00000703526 | 87423906 | 87424052 |
| ENSE00000703613 | 87411893 | 87412033 |
| ENSE00000918880 | 87409236 | 87409392 |
| ENSE00000918882 | 87417312 | 87417515 |
| ENSE00000918883 | 87418537 | 87418620 |
| ENSE00000918884 | 87419998 | 87420075 |
| ENSE00000918885 | 87422121 | 87422225 |
| ENSE00000918890 | 87440199 | 87440402 |
| ENSE00000918891 | 87443319 | 87443444 |
| ENSE00000918892 | 87443663 | 87443773 |
| ENSE00000918893 | 87444862 | 87444975 |
| ENSE00000918894 | 87447034 | 87447205 |
| ENSE00000918895 | 87449968 | 87450092 |
| ENSE00001388379 | 87475386 | 87475471 |
| ENSE00001868583 | 87475634 | 87475680 |
| ENSE00002486480 | 87403135 | 87403281 |
| ENSE00002502499 | 87439667 | 87439837 |
| ENSE00002514753 | 87431404 | 87431565 |
| ENSE00003567026 | 87462758 | 87462908 |
| ENSE00003570234 | 87472621 | 87472675 |
| ENSE00003599345 | 87426750 | 87426920 |
| ENSE00003611473 | 87454535 | 87454592 |
| ENSE00003668484 | 87408037 | 87408234 |
| ENSE00003832598 | 87401696 | 87402302 |
Expression profiles
Bgee: expression breadth ubiquitous, 188 present calls, max score 97.45.
FANTOM5 (CAGE): breadth broad, TPM avg 1.8113 / max 213.5112, expressed in 475 samples.
FANTOM5 promoters (3 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 84720 | 1.6114 | 443 |
| 84722 | 0.1138 | 27 |
| 84721 | 0.0861 | 39 |
Top tissues by expression
294 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| right lobe of liver | UBERON:0001114 | 97.45 | gold quality |
| secondary oocyte | CL:0000655 | 96.98 | gold quality |
| oocyte | CL:0000023 | 96.14 | gold quality |
| liver | UBERON:0002107 | 95.74 | gold quality |
| buccal mucosa cell | CL:0002336 | 88.79 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 83.17 | gold quality |
| right adrenal gland | UBERON:0001233 | 81.66 | gold quality |
| left adrenal gland | UBERON:0001234 | 80.81 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 80.01 | gold quality |
| left adrenal gland cortex | UBERON:0035825 | 79.95 | gold quality |
| adrenal gland | UBERON:0002369 | 79.70 | gold quality |
| biceps brachii | UBERON:0001507 | 79.24 | gold quality |
| adrenal cortex | UBERON:0001235 | 79.17 | gold quality |
| spleen | UBERON:0002106 | 78.91 | gold quality |
| skeletal muscle tissue of rectus abdominis | UBERON:0004511 | 78.88 | gold quality |
| hindlimb stylopod muscle | UBERON:0004252 | 78.81 | gold quality |
| calcaneal tendon | UBERON:0003701 | 78.41 | gold quality |
| apex of heart | UBERON:0002098 | 77.95 | gold quality |
| triceps brachii | UBERON:0001509 | 76.14 | gold quality |
| ventricular zone | UBERON:0003053 | 75.88 | gold quality |
| skeletal muscle tissue of biceps brachii | UBERON:0004502 | 75.35 | gold quality |
| heart left ventricle | UBERON:0002084 | 74.79 | gold quality |
| cardiac ventricle | UBERON:0002082 | 74.41 | gold quality |
| lymph node | UBERON:0000029 | 73.91 | gold quality |
| granulocyte | CL:0000094 | 73.86 | gold quality |
| right atrium auricular region | UBERON:0006631 | 73.69 | gold quality |
| tendon | UBERON:0000043 | 73.58 | gold quality |
| muscle of leg | UBERON:0001383 | 72.74 | gold quality |
| skeletal muscle tissue | UBERON:0001134 | 72.28 | gold quality |
| muscle organ | UBERON:0001630 | 72.27 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): NR1H4, PPARA
Functional genomics
ClinGen dosage: haploinsufficiency 3 (sufficient evidence), triplosensitivity 0 (no evidence). ClinGen Gene Dosage Map
Literature-anchored findings (GeneRIF, showing 40)
- In addition to PFIC3, ab MDR3 defect can be involved in intrahepatic chlestasis of pregnancy and in cholesterol gallstone disease (PMID:11745043)
- present data indicate that polymorphism of the estrogen receptor alpha gene and multidrug resistance 3 gene mutation are unlikely to play any significant role in obstetric cholestasis in affected Finnish women (PMID:12206920)
- present data indicate that polymorphism of the estrogen receptor alpha and multidrug resistance 3 genes 1712delT mutation are unlikely to play any significant role in obstetric cholestasis in affected Finnish women (PMID:12381474)
- Trp(1242) substitutions markedly alter the substrate specificity of human multidrug resistance protein 3 but leave bile salt binding and transport intact (PMID:12388190)
- sequence variation in women with intrahepatic cholestasis of pregnancy (PMID:12746424)
- MDR3 expression is directly up-regulated by FXR in primary human hepatocytes (PMID:14527955)
- Data do not support a strong role of BSEP and MDR3 genetic variations in the pathogenesis of primary biliary cirrhosis and primary sclerosing cholangitis. (PMID:14999697)
- MDR3 genetic variation is associated with pregnancy-associated cholestasis (PMID:15077010)
- HAX-1 binds bile salt export protein (BSEP), cortactin, MDR1, and MDR2. HAX-1 and cortactin regulate BSEP abundance in the apical membrane of cells. (PMID:15159385)
- BF may enhance the capacity of human hepatocytes to direct PC into bile canaliculi via PPARalpha-mediated redistribution of ABCB4 to the canalicular membrane (PMID:15258199)
- The suppressive effects on MDR3 mRNA of PMA were attenuated in antisense PKCbeta-treated cells, but those in antisense PKCalpha-treated cells were not attenuated. These suggested that PKCbeta plays a regulatory role in the expression of MDR3. (PMID:16854530)
- mutations in the canalicular ABC transporter phospholipid flippase (MDR3) and in the bile salt export pump (BSEP) can predispose for the development of ICP. (PMID:16890614)
- Variants of ABCB4 represent genetic risk factors for the severe form of ICP in Sweden. (PMID:16891356)
- This study demonstrates that splicing mutations in the MDR3 gene can cause intrahepatic cholestasis of pregnancy with normal gamma-GT and may be associated with stillbirths and gallstone disease. (PMID:17187437)
- role of ABCB4 mutations and polymorphisms in drug-induced cholestasis. (PMID:17264802)
- ABCB4 mediates the efflux of phospholipids into the canalicular lumen in the presence of bile salts, and plays a crucial role in bile formation and lipid homeostasis. (PMID:17523162)
- Low phospholipid-associated cholelithiasis (LPAC) is characterized by the association of ABCB4 mutations and low biliary phospholipid concentration with symptomatic and recurring cholelithiasis. (PMID:17562004)
- The molecular characterization of 68 Progressive familial intrahepatic cholestasis type 3 (PFIC3) screened for ABCB4 mutations to date, is reported. (PMID:17726488)
- 48 mutations of MDR3 gene have been reported in humans to date, from which 43 (89.5%) in the coding region, and 5 splice site mutations have been associated to cholesterol cholelithiasis. (PMID:17786139)
- MDR3 mutations are responsible for the development of intrahepatic cholestasis of pregnancy in only a small percentage of Italian women. (PMID:18083082)
- Multidrug resistance induced by cisplatin in ovarian carcinoma cell lines is not due to overexpression of MDR1 and MDR3 genes. (PMID:18231753)
- Heterozygous ABCB4 mutations were detected in 34% of adults with unexplained cholestasis, for the most part without biliary symptoms, and could result in significant liver fibrosis (PMID:18482588)
- The Hap 2/Hap 2 diplotype in MDR3 could therefore be potentially applied to DNA-based diagnosis in Japanese patients with primary biliary cirrhosis (PBC) as a strong genetic biomarker for predicting the progression and prognosis of PBC. (PMID:18671305)
- Mutational analysis of ABCB4 should be generally considered in all patients with cholestatic liver disease of unknown etiology regardless of age and onset of disease. (PMID:18781607)
- Mutations in the ABCB4 gene are a rare cause of gallstone disease. (PMID:19018976)
- Mutation I541F causes mislocalization of both ABCB4 and ABCB1. Intracellular retention of ABCB4-I541F can explain the disease in progressive familial intrahepatic cholestasis type 3 patients bearing this mutation. (PMID:19185004)
- Our study demonstrates the splicing mutations in the ABCB4 gene can cause intrahepatic cholestatis in pregnant women with raised serum gamme-GT. (PMID:19261551)
- Novel mutation in the ABCB4 gene may account for intrahepatic cholestasis of pregnancy. (PMID:19266607)
- The results do not support the hypothesis of a link between ABCB4 and ABCB11 polymorphisms, lithogenic dyslipidemia, and gallstone risk. (PMID:19408031)
- in cystic fibrosis patients the c.834-66G>T adenosine triphospate-binding cassette subfamily B member 4 variant may enhance the activity of the protein and thus exert a protective effect toward liver disease (PMID:19467940)
- Mutations in the ABCB4 gene are associated with intrahepatic cholestasis of pregnancy. (PMID:19584064)
- The results suggested that pregnane X receptor, associated with multiple resistance related protein 3, may play an important role in human colon cancer resistance to chemotherapeutics. (PMID:19593667)
- polymorphism in the ABCB4 gene as a predisposing factor for intrahepatic cholestasis of pregnancy in Greece.(489-91) (PMID:19840247)
- Data shiw that multidrug resistance protein 3 R652G polymorphism is negatively correlated with idiopathic infant cholestasis, and that children with the R652G SNP in Guangxi of China may have reduced susceptibility to infant intrahepatic cholestasis. (PMID:19998509)
- Data suggest that variations in canalicular transporters ABCB11 and ABCB4, known to contribute to genetic predisposition to cholesterol gallstones in adulthood, do not contribute specifically to the aetiology of paediatric idiopathic gallstones. (PMID:20163776)
- Data identified three novel mutations in BSEP, one novel mutation in MDR3, and one heterozygous mutation in ATP8B1 in PFIC patients. (PMID:20414253)
- ABCB4 mutations cause many cholestatic liver disease in humans.[Review] (PMID:20422496)
- Sequence analysis of the genes identified 27% cholestasis subjects with missense, nonsense, deletion, and splice site variants associated with disease phenotypes based on the type of mutation in the JAG1, ATP8B1, ABCB11, or ABCB4 genes. (PMID:20683201)
- ABCB4 mutations are responsible for a chronic liver disease in more than one-third of patients with chronic intrahepatic cholestasis and elevated gamma-glutamyl-transpeptidase activity. (PMID:21119540)
- LPAC syndrome is based on a mutation in the ABCB4 gene which codes for MDR3 (multidrug resistance protein 3). (PMID:21161147)
Cross-species orthologs
12 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | abcb4 | ENSDARG00000010936 |
| mus_musculus | Abcb4 | ENSMUSG00000042476 |
| rattus_norvegicus | Abcb1b | ENSRNOG00000066042 |
| caenorhabditis_elegans | WBGENE00001817 | |
| caenorhabditis_elegans | WBGENE00001818 | |
| caenorhabditis_elegans | WBGENE00003995 | |
| caenorhabditis_elegans | WBGENE00004000 | |
| caenorhabditis_elegans | WBGENE00004001 | |
| caenorhabditis_elegans | WBGENE00004002 | |
| caenorhabditis_elegans | WBGENE00004003 | |
| caenorhabditis_elegans | WBGENE00004006 | |
| caenorhabditis_elegans | WBGENE00004008 |
Paralogs (10): ABCB5 (ENSG00000004846), ABCB11 (ENSG00000073734), ABCB1 (ENSG00000085563), ABCB6 (ENSG00000115657), ABCB7 (ENSG00000131269), ABCB10 (ENSG00000135776), ABCB9 (ENSG00000150967), TAP1 (ENSG00000168394), ABCB8 (ENSG00000197150), TAP2 (ENSG00000204267)
Protein
Protein identifiers
Phosphatidylcholine translocator ABCB4 — P21439 (reviewed: P21439)
Alternative names: ATP-binding cassette sub-family B member 4, Multidrug resistance protein 3, P-glycoprotein 3
All UniProt accessions (5): P21439, A0A2R8Y291, A0A2R8Y8A1, E7EQI1, H7C0M2
UniProt curated annotations — full annotation on UniProt →
Function. Energy-dependent phospholipid efflux translocator that acts as a positive regulator of biliary lipid secretion. Functions as a floppase that translocates specifically phosphatidylcholine (PC) from the inner to the outer leaflet of the canalicular membrane bilayer into the canaliculi of hepatocytes. Translocation of PC makes the biliary phospholipids available for extraction into the canaliculi lumen by bile salt mixed micelles and therefore protects the biliary tree from the detergent activity of bile salts. Plays a role in the recruitment of phosphatidylcholine (PC), phosphatidylethanolamine (PE) and sphingomyelin (SM) molecules to nonraft membranes and to further enrichment of SM and cholesterol in raft membranes in hepatocytes. Required for proper phospholipid bile formation. Indirectly involved in cholesterol efflux activity from hepatocytes into the canalicular lumen in the presence of bile salts in an ATP-dependent manner. Promotes biliary phospholipid secretion as canaliculi-containing vesicles from the canalicular plasma membrane. In cooperation with ATP8B1, functions to protect hepatocytes from the deleterious detergent activity of bile salts. Does not confer multidrug resistance.
Subunit / interactions. May interact with RACK1. Interacts with HAX1.
Subcellular location. Cell membrane. Apical cell membrane. Membrane raft. Cytoplasm. Cytoplasmic vesicle. Clathrin-coated vesicle.
Post-translational modifications. Phosphorylated. Phosphorylation on Thr-34 is required for PC efflux activity. Phosphorylation occurs on serine and threonine residues in a protein kinase A- or C-dependent manner. May be phosphorylated on Thr-44 and Ser-49. Glycosylated.
Disease relevance. Cholestasis, progressive familial intrahepatic, 3 (PFIC3) [MIM:602347] A disorder characterized by early onset of cholestasis that progresses to hepatic fibrosis, cirrhosis, and end-stage liver disease before adulthood. PFIC3 inheritance is autosomal recessive. The disease is caused by variants affecting the gene represented in this entry. Cholestasis of pregnancy, intrahepatic 3 (ICP3) [MIM:614972] A liver disorder of pregnancy. It presents during the second or, more commonly, the third trimester of pregnancy with intense pruritus which becomes more severe with advancing gestation and cholestasis. It causes fetal distress, spontaneous premature delivery and intrauterine death. Patients have spontaneous and progressive disappearance of cholestasis after delivery. Cholestasis results from abnormal biliary transport from the liver into the small intestine. The disease is caused by variants affecting the gene represented in this entry. Gallbladder disease 1 (GBD1) [MIM:600803] One of the major digestive diseases. Gallstones composed of cholesterol (cholelithiasis) are the common manifestations in western countries. Most people with gallstones, however, remain asymptomatic through their lifetimes. The disease is caused by variants affecting the gene represented in this entry.
Activity regulation. Translocation activity is inhibited by the ATPase inhibitor vanadate and the calcium channel blocker verapamil. Translocation activity is enhanced by the addition of the bile salt taurocholate.
Induction. Up-regulated by PPARA. Up-regulated by compounds that cause peroxisome proliferation, such as fenofibrate (at protein level). Up-regulated by bezafibrate. Up-regulated by compounds that cause peroxisome proliferation, such as fenofibrate, bezafibrate and gemfibrozil.
Similarity. Belongs to the ABC transporter superfamily. ABCB family. Multidrug resistance exporter (TC 3.A.1.201) subfamily.
Isoforms (3)
| UniProt ID | Names | Canonical? |
|---|---|---|
| P21439-1 | 1 | yes |
| P21439-2 | 2 | |
| P21439-3 | 3 |
RefSeq proteins (3): NP_000434, NP_061337, NP_061338 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR003439 | ABC_transporter-like_ATP-bd | Domain |
| IPR003593 | AAA+_ATPase | Domain |
| IPR011527 | ABC1_TM_dom | Domain |
| IPR017871 | ABC_transporter-like_CS | Conserved_site |
| IPR027417 | P-loop_NTPase | Homologous_superfamily |
| IPR036640 | ABC1_TM_sf | Homologous_superfamily |
| IPR039421 | Type_1_exporter | Family |
Pfam: PF00005, PF00664
Catalyzed reactions (Rhea), 3 shown:
- a 1,2-diacyl-sn-glycero-3-phosphoethanolamine(in) + ATP + H2O = a 1,2-diacyl-sn-glycero-3-phosphoethanolamine(out) + ADP + phosphate + H(+) (RHEA:36439)
- a sphingomyelin(in) + ATP + H2O = a sphingomyelin(out) + ADP + phosphate + H(+) (RHEA:38903)
- a 1,2-diacyl-sn-glycero-3-phosphocholine(in) + ATP + H2O = a 1,2-diacyl-sn-glycero-3-phosphocholine(out) + ADP + phosphate + H(+) (RHEA:66272)
UniProt features (221 total): sequence variant 90, helix 46, strand 25, topological domain 13, transmembrane region 12, mutagenesis site 10, binding site 8, turn 5, domain 4, modified residue 2, glycosylation site 2, splice variant 2, chain 1, region of interest 1
Structure
Experimental structures (PDB)
4 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 6S7P | ELECTRON MICROSCOPY | 3.2 |
| 7NIV | ELECTRON MICROSCOPY | 3.6 |
| 7NIW | ELECTRON MICROSCOPY | 3.8 |
| 7NIU | ELECTRON MICROSCOPY | 4.2 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P21439-F1 | 83.36 | 0.48 |
Antibody-complex structures (SAbDab): 3 — 7NIU, 7NIV, 7NIW
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Ligand- & substrate-binding residues (8): 406; 432–437; 477; 536; 1046; 1071–1077; 1124; 1184–1186
Post-translational modifications (2): 27, 34
Glycosylation sites (2): 91, 97
Mutagenesis-validated functional residues (10):
| Position | Phenotype |
|---|---|
| 34 | does not inhibit efflux activity for pc. |
| 44 | reduces efflux activity for pc. does not alter apical membrane location. |
| 49 | reduces efflux activity for pc. does not alter apical membrane location. |
| 435 | inhibits efflux activity for pc and cholesterol, but does not alter glycosylation and surface expression in the presence |
| 558 | loss of floppase activity. strongly reduce the atpase activity. |
| 953 | accumulates predominantly in intracellular compartments with only a small fraction at the plasma membrane and inhibits p |
| 985 | significantly reduces phosphatidylcholine floppase activity; when associated with q-989 and v-990. |
| 989 | significantly reduces phosphatidylcholine floppase activity; when associated with m-985 and v-990. |
| 990 | significantly reduces phosphatidylcholine floppase activity; when associated with m-985 and q-989. |
| 1075 | inhibits efflux activity for pc and cholesterol, but does not alter glycosylation and surface expression in the presence |
Function
Pathways and Gene Ontology
Reactome pathways
10 pathways
| ID | Pathway |
|---|---|
| R-HSA-1989781 | PPARA activates gene expression |
| R-HSA-382556 | ABC-family protein mediated transport |
| R-HSA-5678771 | Defective ABCB4 causes PFIC3, ICP3 and GBD1 |
| R-HSA-1430728 | Metabolism |
| R-HSA-1643685 | Disease |
| R-HSA-382551 | Transport of small molecules |
| R-HSA-400206 | Regulation of lipid metabolism by PPARalpha |
| R-HSA-556833 | Metabolism of lipids |
| R-HSA-5619084 | ABC transporter disorders |
| R-HSA-5619115 | Disorders of transmembrane transporters |
MSigDB gene sets: 322 (showing top):
GOBP_ACID_SECRETION, GOBP_CELLULAR_RESPONSE_TO_LIPID, IVANOVA_HEMATOPOIESIS_LATE_PROGENITOR, GOBP_POSITIVE_REGULATION_OF_STEROL_TRANSPORT, LUCAS_HNF4A_TARGETS_UP, GOBP_CELLULAR_RESPONSE_TO_OXYGEN_CONTAINING_COMPOUND, GOBP_REGULATION_OF_MEMBRANE_LIPID_DISTRIBUTION, GOBP_POSITIVE_REGULATION_OF_LIPID_TRANSPORT, GOBP_ORGANIC_ACID_TRANSPORT, KEGG_ABC_TRANSPORTERS, GOBP_ORGANIC_HYDROXY_COMPOUND_TRANSPORT, GOBP_ORGANOPHOSPHATE_ESTER_TRANSPORT, GOBP_LIPID_HOMEOSTASIS, UEDA_PERIFERAL_CLOCK, GOBP_RESPONSE_TO_KETONE
GO Biological Process (11): lipid metabolic process (GO:0006629), positive regulation of cholesterol transport (GO:0032376), bile acid secretion (GO:0032782), phospholipid translocation (GO:0045332), transmembrane transport (GO:0055085), lipid homeostasis (GO:0055088), positive regulation of phospholipid translocation (GO:0061092), response to fenofibrate (GO:1901557), cellular response to bile acid (GO:1903413), positive regulation of phospholipid transport (GO:2001140), lipid transport (GO:0006869)
GO Molecular Function (9): ATP binding (GO:0005524), obsolete phospholipid transporter activity (GO:0005548), ATP hydrolysis activity (GO:0016887), ATPase-coupled transmembrane transporter activity (GO:0042626), phosphatidylcholine floppase activity (GO:0090554), ABC-type transporter activity (GO:0140359), nucleotide binding (GO:0000166), protein binding (GO:0005515), ATPase-coupled intramembrane lipid carrier activity (GO:0140326)
GO Cellular Component (12): nucleoplasm (GO:0005654), cytoplasm (GO:0005737), cytosol (GO:0005829), plasma membrane (GO:0005886), focal adhesion (GO:0005925), membrane (GO:0016020), apical plasma membrane (GO:0016324), clathrin-coated vesicle (GO:0030136), membrane raft (GO:0045121), intercellular canaliculus (GO:0046581), extracellular exosome (GO:0070062), cytoplasmic vesicle (GO:0031410)
Reactome top-level categories
Rollup of top-7 pathways:
| Category | Pathways |
|---|---|
| Regulation of lipid metabolism by PPARalpha | 1 |
| Transport of small molecules | 1 |
| ABC transporter disorders | 1 |
| Metabolism of lipids | 1 |
| Metabolism | 1 |
| Disorders of transmembrane transporters | 1 |
| Disease | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 4 |
| ATP-dependent activity | 3 |
| phospholipid transport | 2 |
| transport | 2 |
| cytoplasm | 2 |
| primary metabolic process | 1 |
| cholesterol transport | 1 |
| positive regulation of sterol transport | 1 |
| regulation of cholesterol transport | 1 |
| monocarboxylic acid transport | 1 |
| acid secretion | 1 |
| lipid translocation | 1 |
| cellular process | 1 |
| chemical homeostasis | 1 |
| phospholipid translocation | 1 |
| positive regulation of cellular component organization | 1 |
| regulation of phospholipid translocation | 1 |
| positive regulation of phospholipid transport | 1 |
| response to ether | 1 |
| response to ketone | 1 |
| cellular response to lipid | 1 |
| cellular response to oxygen-containing compound | 1 |
| response to bile acid | 1 |
| positive regulation of lipid transport | 1 |
| regulation of phospholipid transport | 1 |
| lipid localization | 1 |
| adenyl ribonucleotide binding | 1 |
| purine ribonucleoside triphosphate binding | 1 |
| ribonucleoside triphosphate phosphatase activity | 1 |
| primary active transmembrane transporter activity | 1 |
| ATP hydrolysis activity | 1 |
| phosphatidylcholine intramembrane carrier activity | 1 |
| floppase activity | 1 |
| ATPase-coupled transmembrane transporter activity | 1 |
| nucleoside phosphate binding | 1 |
| heterocyclic compound binding | 1 |
| binding | 1 |
| intramembrane lipid carrier activity | 1 |
| nuclear lumen | 1 |
| intracellular anatomical structure | 1 |
Protein interactions and networks
STRING
2318 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| ABCB4 | ATP8B1 | O43520 | 924 |
| ABCB4 | SLC10A2 | Q12908 | 848 |
| ABCB4 | CYP7A1 | P22680 | 736 |
| ABCB4 | NR1H4 | Q96RI1 | 732 |
| ABCB4 | SLC10A1 | Q14973 | 731 |
| ABCB4 | NR1I2 | O75469 | 698 |
| ABCB4 | GGT1 | P19440 | 683 |
| ABCB4 | SLC51A | Q86UW1 | 649 |
| ABCB4 | ABCB1 | P08183 | 637 |
| ABCB4 | CYP8B1 | Q9UNU6 | 631 |
| ABCB4 | ABCC2 | Q92887 | 628 |
| ABCB4 | AKR1D1 | P51857 | 591 |
| ABCB4 | NR0B2 | Q15466 | 588 |
| ABCB4 | SLCO1A2 | P46721 | 580 |
| ABCB4 | SLC51B | Q86UW2 | 580 |
IntAct
6 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| TRDN | TMEM223 | psi-mi:“MI:0914”(association) | 0.640 |
| TESK1 | ABCB4 | psi-mi:“MI:0915”(physical association) | 0.370 |
| ABCB4 | PIGY | psi-mi:“MI:0915”(physical association) | 0.370 |
| SAAL1 | TMEM223 | psi-mi:“MI:0914”(association) | 0.350 |
| terD | ABCB4 | psi-mi:“MI:0915”(physical association) | 0.000 |
BioGRID (9): ABCB4 (Affinity Capture-RNA), ABCB4 (Cross-Linking-MS (XL-MS)), IFIT5 (Cross-Linking-MS (XL-MS)), ABCB4 (Cross-Linking-MS (XL-MS)), ABCB4 (Cross-Linking-MS (XL-MS)), ABCB1 (Cross-Linking-MS (XL-MS)), ABCB11 (Cross-Linking-MS (XL-MS)), TESK1 (Two-hybrid), PIGY (Two-hybrid)
ESM2 similar proteins: A0A059JJ46, A0A1U8QG99, B5X0E4, B8K1W2, F2PRR1, F2RP52, H6TB12, O70127, O95342, P06795, P08183, P16876, P16877, P21439, P21440, P21447, P21449, P23174, P34712, P34713, P43245, P91660, Q00449, Q00748, Q08201, Q0WML0, Q2M3G0, Q54JR2, Q6Q876, Q6YUU5, Q7FB56, Q8LPK2, Q9C7F2, Q9C7F8, Q9FHF1, Q9FNU2, Q9FWX8, Q9LHD1, Q9LHK4, Q9LJX0
Diamond homologs: A0A059JJ46, A0A059JK44, A0A095C325, A0A0D1BUH6, A0A1U8QG99, A0A1U9YI12, A0A2P1AAV1, A0A348AXX9, A1KF14, B2GUP8, B2KWH4, B5X0E4, B8K1W2, F2PRR1, F2Q5G0, F2RP52, F2RPA4, F2SQT8, F2T1C4, G5EG61, H6TB12, J9VF33, K3VYH8, O53645, O70127, O80725, O95342, P06795, P08183, P0CU83, P16875, P16876, P16877, P21439, P21440, P21447, P21448, P21449, P23174, P34712
SIGNOR signaling
1 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| NR1H4 | “up-regulates quantity by expression” | ABCB4 | “transcriptional regulation” |
Disease & clinical
Clinical variants and AI predictions
ClinVar
1570 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 155 |
| Likely pathogenic | 66 |
| Uncertain significance | 693 |
| Likely benign | 398 |
| Benign | 82 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1335676 | NM_000443.4(ABCB4):c.2858C>A (p.Ala953Asp) | Pathogenic |
| 13686 | NM_000443.4(ABCB4):c.394_400del (p.Tyr132fs) | Pathogenic |
| 13688 | NM_000443.4(ABCB4):c.1712del (p.Val571fs) | Pathogenic |
| 13693 | NM_000443.4(ABCB4):c.1328_1329delinsCAA (p.Gln443fs) | Pathogenic |
| 13694 | NM_000443.4(ABCB4):c.2169dup (p.Leu724fs) | Pathogenic |
| 13696 | NM_000443.4(ABCB4):c.430C>T (p.Arg144Ter) | Pathogenic |
| 1431360 | NM_000443.4(ABCB4):c.2653_2654del (p.Arg884_Asp885insTer) | Pathogenic |
| 1454966 | NC_000007.13:g.(?87042913)(87043053_?)del | Pathogenic |
| 1458242 | NC_000007.13:g.(?87072615)(87076541_?)del | Pathogenic |
| 1676068 | NM_000443.4(ABCB4):c.838C>T (p.Gln280Ter) | Pathogenic |
| 1685491 | NM_000443.4(ABCB4):c.984T>G (p.Tyr328Ter) | Pathogenic |
| 2423100 | NC_000007.13:g.(?87092054)(87092244_?)del | Pathogenic |
| 2498173 | NM_000443.4(ABCB4):c.2200G>T (p.Glu734Ter) | Pathogenic |
| 2571280 | NM_000443.4(ABCB4):c.2587_2591delinsATCAGTGTTAAACACTGATTGAAAGTGTGTCTGATC (p.Val863_Val864delinsIleSerValLysHisTer) | Pathogenic |
| 2635175 | NM_000443.4(ABCB4):c.286+1G>A | Pathogenic |
| 2687808 | NM_000443.4(ABCB4):c.2306_2309del (p.Phe769fs) | Pathogenic |
| 2687810 | NM_000443.4(ABCB4):c.3770del (p.Gln1257fs) | Pathogenic |
| 2687811 | NM_000443.4(ABCB4):c.1733C>T (p.Ala578Val) | Pathogenic |
| 2687813 | NM_000443.4(ABCB4):c.3412del (p.Val1138fs) | Pathogenic |
| 2687815 | NM_000443.4(ABCB4):c.1635del (p.Ala546fs) | Pathogenic |
| 2687820 | NM_000443.4(ABCB4):c.2864G>T (p.Cys955Phe) | Pathogenic |
| 2687821 | NM_000443.4(ABCB4):c.784del (p.Ala262fs) | Pathogenic |
| 2695513 | NM_000443.4(ABCB4):c.3520C>T (p.Gln1174Ter) | Pathogenic |
| 2713948 | NM_000443.4(ABCB4):c.749del (p.Ala250fs) | Pathogenic |
| 2735040 | NM_000443.4(ABCB4):c.3349C>T (p.Gln1117Ter) | Pathogenic |
| 2735041 | NM_000443.4(ABCB4):c.1768C>T (p.Arg590Ter) | Pathogenic |
| 2737106 | NM_000443.4(ABCB4):c.3492T>G (p.Tyr1164Ter) | Pathogenic |
| 2758037 | NM_000443.4(ABCB4):c.2090_2093dup (p.Lys699fs) | Pathogenic |
| 2777505 | NM_000443.4(ABCB4):c.1690_1702del (p.Asp564fs) | Pathogenic |
| 2820526 | NM_000443.4(ABCB4):c.2609C>G (p.Ser870Ter) | Pathogenic |
SpliceAI
4074 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 7:87403133:A:T | donor_loss | 1.0000 |
| 7:87403134:C:CA | donor_loss | 1.0000 |
| 7:87403134:CCTTT:C | donor_gain | 1.0000 |
| 7:87403279:TTT:T | acceptor_gain | 1.0000 |
| 7:87406286:A:AC | donor_gain | 1.0000 |
| 7:87406287:C:CC | donor_gain | 1.0000 |
| 7:87406495:C:CC | acceptor_gain | 1.0000 |
| 7:87409234:A:AC | donor_gain | 1.0000 |
| 7:87409234:ACAGG:A | donor_gain | 1.0000 |
| 7:87409235:C:CC | donor_gain | 1.0000 |
| 7:87409235:CAGG:C | donor_gain | 1.0000 |
| 7:87409235:CAGGC:C | donor_gain | 1.0000 |
| 7:87409389:CACC:C | acceptor_gain | 1.0000 |
| 7:87409391:CC:C | acceptor_gain | 1.0000 |
| 7:87409392:CC:C | acceptor_gain | 1.0000 |
| 7:87418535:A:AC | donor_gain | 1.0000 |
| 7:87418535:ACT:A | donor_gain | 1.0000 |
| 7:87418536:C:CC | donor_gain | 1.0000 |
| 7:87418536:CTC:C | donor_gain | 1.0000 |
| 7:87426748:A:AC | donor_gain | 1.0000 |
| 7:87426749:C:CC | donor_gain | 1.0000 |
| 7:87426749:CAA:C | donor_gain | 1.0000 |
| 7:87426749:CAAGT:C | donor_gain | 1.0000 |
| 7:87431399:AGTAC:A | donor_loss | 1.0000 |
| 7:87431400:GTAC:G | donor_loss | 1.0000 |
| 7:87431401:TACCT:T | donor_loss | 1.0000 |
| 7:87431402:A:AT | donor_loss | 1.0000 |
| 7:87431403:C:CT | donor_loss | 1.0000 |
| 7:87431435:T:A | donor_gain | 1.0000 |
| 7:87431561:CTGGC:C | acceptor_gain | 1.0000 |
AlphaMissense
0 scored. Top likely-pathogenic:
dbSNP variants (sampled 300 via entrez): RS1000088915 (7:87389713 T>A,C), RS1000094533 (7:87421626 A>C), RS1000105079 (7:87455664 C>A), RS1000137774 (7:87455197 A>G), RS1000183408 (7:87418183 C>T), RS1000195002 (7:87427140 G>T), RS1000198256 (7:87368314 T>A), RS1000198773 (7:87377287 A>G), RS1000212936 (7:87418622 T>C), RS1000226693 (7:87471063 T>C), RS1000287343 (7:87434350 T>C), RS1000326261 (7:87477366 T>A), RS1000378315 (7:87472880 A>G), RS1000391993 (7:87433675 GTTTTTTT>G,GT,GTTT,GTTTT,GTTTTT,GTTTTTT,GTTTTTTTT,GTTTTTTTTT,GTTTTTTTTTT,GTTTTTTTTTTT,GTTTTTTTTTTTT,GTTTTTTTTTTTTT,GTTTTTTTTTTTTTT,GTTTTTTTTTTTTTTT), RS1000525296 (7:87420049 C>T)
Disease associations
OMIM: gene MIM:171060 | disease phenotypes: MIM:602347, MIM:600803, MIM:614972, MIM:211600, MIM:181500, MIM:248200
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| gallbladder disease 1 | Definitive | Semidominant |
| progressive familial intrahepatic cholestasis type 3 | Strong | Autosomal recessive |
| cholestasis, intrahepatic, of pregnancy, 3 | Strong | Semidominant |
| pancreatitis | Limited | Autosomal dominant |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| progressive familial intrahepatic cholestasis type 3 | Definitive | AR |
Mondo (10): progressive familial intrahepatic cholestasis type 3 (MONDO:0011214), gallbladder disease 1 (MONDO:0010939), familial intrahepatic cholestasis (MONDO:0017290), cholestasis, intrahepatic, of pregnancy, 3 (MONDO:0013995), progressive familial intrahepatic cholestasis (MONDO:0015762), progressive familial intrahepatic cholestasis type 1 (MONDO:0008892), schizophrenia (MONDO:0005090), intrahepatic cholestasis (MONDO:0019072), severe early-childhood-onset retinal dystrophy (MONDO:0009549), pancreatitis (MONDO:0004982)
Orphanet (9): Progressive familial intrahepatic cholestasis type 3 (Orphanet:79305), Familial intrahepatic cholestasis (Orphanet:284385), Low phospholipid-associated cholelithiasis (Orphanet:69663), Intrahepatic cholestasis of pregnancy (Orphanet:69665), Progressive familial intrahepatic cholestasis (Orphanet:172), Progressive familial intrahepatic cholestasis type 1 (Orphanet:79306), Severe early-childhood-onset retinal dystrophy (Orphanet:364055), Stargardt disease (Orphanet:827), NON RARE IN EUROPE: Schizophrenia (Orphanet:3140)
HPO phenotypes
62 total (30 of 62 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000716 | Depression |
| HP:0000819 | Diabetes mellitus |
| HP:0000821 | Hypothyroidism |
| HP:0000822 | Hypertension |
| HP:0000952 | Jaundice |
| HP:0000988 | Skin rash |
| HP:0000989 | Pruritus |
| HP:0001081 | Cholelithiasis |
| HP:0001082 | Cholecystitis |
| HP:0001337 | Tremor |
| HP:0001394 | Cirrhosis |
| HP:0001395 | Hepatic fibrosis |
| HP:0001396 | Cholestasis |
| HP:0001402 | Hepatocellular carcinoma |
| HP:0001406 | Intrahepatic cholestasis |
| HP:0001408 | Bile duct proliferation |
| HP:0001513 | Obesity |
| HP:0001518 | Small for gestational age |
| HP:0001541 | Ascites |
| HP:0001622 | Premature birth |
| HP:0001732 | Abnormality of the pancreas |
| HP:0001733 | Pancreatitis |
| HP:0001744 | Splenomegaly |
| HP:0002014 | Diarrhea |
| HP:0002024 | Malabsorption |
| HP:0002027 | Abdominal pain |
| HP:0002240 | Hepatomegaly |
| HP:0002613 | Biliary cirrhosis |
GWAS associations
18 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST002576_6 | Epithelial ovarian cancer | 4.000000e-06 |
| GCST004201_1 | Gallbladder cancer | 2.000000e-10 |
| GCST005998_17 | Alanine transaminase levels | 2.000000e-18 |
| GCST006612_58 | LDL cholesterol | 7.000000e-10 |
| GCST006614_40 | Total cholesterol levels | 2.000000e-08 |
| GCST007209_24 | Gallstone disease | 9.000000e-28 |
| GCST010204_55 | Low density lipoprotein cholesterol levels | 6.000000e-09 |
| GCST010243_134 | Apolipoprotein B levels | 4.000000e-09 |
| GCST010245_26 | LDL cholesterol levels | 7.000000e-09 |
| GCST011352_28 | Alanine aminotransferase levels | 1.000000e-19 |
| GCST90002385_141 | High light scatter reticulocyte count | 1.000000e-09 |
| GCST90002386_452 | High light scatter reticulocyte percentage of red cells | 2.000000e-09 |
| GCST90002396_394 | Mean reticulocyte volume | 3.000000e-11 |
| GCST90002404_293 | Red cell distribution width | 1.000000e-10 |
| GCST90002405_483 | Reticulocyte count | 8.000000e-12 |
| GCST90002406_249 | Reticulocyte fraction of red cells | 1.000000e-11 |
| GCST90011898_104 | Alanine aminotransferase levels | 4.000000e-42 |
| GCST90011899_133 | Aspartate aminotransferase levels | 3.000000e-12 |
EFO canonical traits (7, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004611 | low density lipoprotein cholesterol measurement |
| EFO:0004574 | total cholesterol measurement |
| EFO:0004615 | apolipoprotein B measurement |
| EFO:0007986 | reticulocyte count |
| EFO:0010701 | mean reticulocyte volume |
| EFO:0009188 | Red cell distribution width |
| EFO:0004736 | aspartate aminotransferase measurement |
MeSH disease descriptors (3)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D002780 | Cholestasis, Intrahepatic | C06.130.120.135.250; C06.552.150 |
| D010195 | Pancreatitis | C06.689.750 |
| C535935 | Cholestasis, progressive familial intrahepatic 3 (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL1743129 (SINGLE PROTEIN)
Molecules with ChEMBL bioactivity
1 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 68 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).
| Molecule | Name | Phase | Patents |
|---|---|---|---|
| CHEMBL4297270 | BMS-986020 | 2 | 68 |
PharmGKB: 1 entry (VIP=true, CPIC=false)
PharmGKB clinical annotations
3 annotations.
| Variant | Type | Level | Drugs | Phenotypes |
|---|---|---|---|---|
| rs1149222 | Toxicity | 4 | anthracyclines and related substances | Neoplasms |
| rs1202283 | Efficacy | 3 | imatinib | Gastrointestinal Stromal Tumors |
| rs4148808 | Toxicity | 4 | anthracyclines and related substances | Neoplasms |
PharmGKB variants
3 variants.
| Variant | Genes | Level | Score | #Clin annots | Drugs |
|---|---|---|---|---|---|
| rs1149222 | ABCB4 | 4 | -1.00 | 1 | anthracyclines and related substances |
| rs4148808 | ABCB4 | 4 | -1.50 | 1 | anthracyclines and related substances |
| rs1202283 | ABCB4 | 3 | 2.50 | 1 | imatinib |
GtoPdb / IUPHAR curated pharmacology
(IUPHAR/BPS Guide to Pharmacology — expert-curated)
Target class: transporter — ABCB subfamily
ChEMBL bioactivities
2 potent at pChembl≥5 of 2 total, top 2 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 5.12 | IC50 | 7500 | nM | BMS-986020 |
| 5.10 | IC50 | 7943 | nM | BMS-986020 |
PubChem BioAssay actives
1 with measured affinity, of 8 total; 1 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| 1-[4-[4-[3-methyl-4-[[(1R)-1-phenylethoxy]carbonylamino]-1,2-oxazol-5-yl]phenyl]phenyl]cyclopropane-1-carboxylic acid | 1813448: Inhibition of MDR3 (unknown origin) | ic50 | 7.5000 | uM |
CTD chemical–gene interactions
142 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | decreases activity, decreases methylation, affects cotreatment, increases expression, affects expression | 9 |
| Chenodeoxycholic Acid | affects cotreatment, increases expression, affects binding, increases activity, decreases expression | 6 |
| Cyclosporine | decreases expression, increases expression, affects cotreatment | 6 |
| Benzo(a)pyrene | affects methylation, decreases expression, increases expression, increases methylation | 4 |
| Acetaminophen | decreases expression, affects cotreatment | 3 |
| Doxorubicin | decreases reaction, increases expression, decreases response to substance | 3 |
| Phospholipids | affects localization, affects transport | 3 |
| Aflatoxin B1 | increases expression, decreases methylation, affects expression, affects cotreatment | 3 |
| nefazodone | affects cotreatment, increases expression, decreases activity | 2 |
| zafirlukast | decreases activity | 2 |
| GW 4064 | affects binding, increases activity, increases expression | 2 |
| Troglitazone | decreases activity, increases expression | 2 |
| Bezafibrate | affects localization, affects cotreatment, increases expression, affects reaction | 2 |
| Deoxycholic Acid | affects cotreatment, decreases expression, increases expression | 2 |
| Diclofenac | decreases activity, decreases expression | 2 |
| Glycochenodeoxycholic Acid | increases expression, affects cotreatment, decreases expression | 2 |
| Glycocholic Acid | affects cotreatment, decreases expression, increases expression | 2 |
| Glycodeoxycholic Acid | affects cotreatment, decreases expression, increases expression | 2 |
| Gold | decreases expression, affects binding | 2 |
| Methapyrilene | decreases expression, decreases methylation | 2 |
| Methotrexate | decreases activity, increases expression | 2 |
| Verapamil | decreases activity, decreases expression | 2 |
| Ritonavir | decreases activity, decreases expression | 2 |
| bisphenol F | increases methylation, affects cotreatment | 1 |
| benzarone | decreases activity | 1 |
| lasiocarpine | decreases expression | 1 |
| methyleugenol | decreases expression | 1 |
| oxybutynin | decreases activity | 1 |
| triphenyl phosphate | affects expression | 1 |
| chlortoluron | decreases expression | 1 |
ChEMBL screening assays
4 unique, capped per target: 3 admet, 1 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL1743163 | ADMET | Substrates of transporters of clinical importance in the absorption and disposition of drugs, MDR3 | Membrane transporters in drug development. — Nat Rev Drug Discov |
| CHEMBL6158908 | Binding | Inhibition of MDR3 in human hepatocytes in the presence of TCA incubated for 3 hrs by LC-MS/MS | Novel Cyclohexyl Amido Acid Antagonists of Lysophosphatidic Acid Type 1 Receptor for the Treatment of Pulmonary Fibrosis. — ACS Med Chem Lett |
Cellosaurus cell lines
1 cell lines: 1 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_B6AF | HepaRG MDR3 KO | Cancer cell line | Female |
Clinical trials (associated diseases)
476 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00318994 | PHASE4 | COMPLETED | Evaluation of Pancreatic Tissue Penetration of Meronem® in the Prophylaxis of Septic Complications in Severe Pancreatitis |
| NCT00428025 | PHASE4 | TERMINATED | Diclofenac for the Prevention of Post-ERCP Pancreatitis in Higher Risk Patients |
| NCT00786929 | PHASE4 | COMPLETED | Acute Pancreatitis and Acute Fluid Collections |
| NCT00999232 | PHASE4 | COMPLETED | Assess the Effect of Erythromycin on the Rate of Success in Placement of a Self-propelled Feeding Tube |
| NCT01070680 | PHASE4 | COMPLETED | Dexmedetomidine Versus Placebo in Endoscopic Retrograde Cholangiopancreatography (ERCP) Sedation |
| NCT01132521 | PHASE4 | SUSPENDED | Ulinastatin in Severe Acute Pancreatitis |
| NCT01186562 | PHASE4 | COMPLETED | Sitagliptin Therapy to Improve Outcomes After Islet Autotransplant |
| NCT01744847 | PHASE4 | COMPLETED | DGT Versus TPS in Patients With Initial PD Cannulation by Chance; Prospective Multi-center Study |
| NCT01784445 | PHASE4 | COMPLETED | Post ERCP Pancreatitis Prevention in Average Risk Patients |
| NCT02027311 | PHASE4 | COMPLETED | Etomidate vs. Midazolam for Sedation During ERCP |
| NCT02281799 | PHASE4 | WITHDRAWN | Thiopurine Induced Pancreatitis in IBD Patients |
| NCT02465138 | PHASE4 | WITHDRAWN | A Randomized Controlled Trial of IV Ketorolac to Prevent Post-ERCP Pancreatitis |
| NCT02797067 | PHASE4 | COMPLETED | Rectal Indomethacin to Prevent Post ESWL-pancreatitis |
| NCT05659147 | PHASE4 | ENROLLING_BY_INVITATION | Imaging Biomarkers of Pancreatic Function and Disease |
| NCT07024199 | PHASE4 | RECRUITING | Comparison of the Effectiveness of Paracetamol With Ibuprofen or Paracetamol With Metamizole in Treating Pain in Acute Pancreatitis in Children |
| NCT07083063 | PHASE4 | RECRUITING | Precise Endoscopic Application of Nitroglycerin in Preventing Post-ERCP Pancreatitis |
| NCT07262957 | PHASE4 | RECRUITING | Preventing Postoperative Complications in Patients Undergoing High-risk Pancreatoduodenectomy With a Bundle Approach Including Hydrocortisone, Octreotide, and the Teres Ligament Patch (PANENCA) |
| NCT00000374 | PHASE4 | COMPLETED | Treatment for First-Episode Schizophrenia |
| NCT00001656 | PHASE4 | COMPLETED | Comparison of Clozapine vs Olanzapine in Childhood-Onset Psychotic Disorders |
| NCT00007774 | PHASE4 | COMPLETED | To Determine if Olanzapine is More Cost Effective Than Haloperidol for the Treatment of Schizophrenia |
| NCT00014001 | PHASE4 | COMPLETED | CATIE- Schizophrenia Trial |
| NCT00018668 | PHASE4 | COMPLETED | Antipsychotic Response in Schizophrenia |
| NCT00034801 | PHASE4 | COMPLETED | Olanzapine Versus Active Comparator in the Treatment of Depression in Patients With Schizophrenia |
| NCT00034905 | PHASE4 | COMPLETED | A Comparison of Seroquel vs. Risperidone in Schizophrenia |
| NCT00036088 | PHASE4 | COMPLETED | Olanzapine Versus An Active Comparator in the Treatment of Schizophrenia |
| NCT00044187 | PHASE4 | COMPLETED | The Assessment of a Weight-Gain Agent for the Treatment of Olanzapine-Associated Anti-Obesity Agent in Patients With Schizophrenia, Schizophreniform Disorder, Schizoaffective Disorder, and Bipolar I Disorder |
| NCT00044655 | PHASE4 | COMPLETED | Switching Medication to Treat Schizophrenia |
| NCT00048828 | PHASE4 | COMPLETED | Treating Drug-Resistant Childhood Schizophrenia |
| NCT00053703 | PHASE4 | COMPLETED | Treatment of Early Onset Schizophrenia Spectrum Disorders (TEOSS) |
| NCT00056498 | PHASE4 | COMPLETED | Risperidone Treatment in Schizophrenia Patients Who Are Currently Taking Clozapine |
| NCT00061802 | PHASE4 | COMPLETED | Efficacy and Safety of Two Atypical Antipsychotics vs. Placebo in Patients With an Acute Exacerbation of Either Schizophrenia or Schizoaffective Disorder |
| NCT00080327 | PHASE4 | COMPLETED | Study of Three Doses of Aripiprazole in Patients With Acute Schizophrenia |
| NCT00088049 | PHASE4 | COMPLETED | Study of Olanzapine vs. Aripiprazole in the Treatment of Schizophrenia |
| NCT00090012 | PHASE4 | COMPLETED | Comparison of Continuing Olanzapine to Switching to Quetiapine in Overweight or Obese Patients With Schizophrenia and Schizoaffective Disorder |
| NCT00100776 | PHASE4 | COMPLETED | Efficacy of High Dose Olanzapine for the Treatment of Schizophrenia and Schizoaffective Disorder |
| NCT00103571 | PHASE4 | COMPLETED | Olanzapine Versus Aripiprazole in the Treatment of Acutely Ill Patients With Schizophrenia |
| NCT00108368 | PHASE4 | COMPLETED | The Effects of Risperidone and Olanzapine on Thinking |
| NCT00114595 | PHASE4 | COMPLETED | Ethyl-Eicosapentaenoic Acid and Tardive Dyskinesia |
| NCT00130923 | PHASE4 | COMPLETED | Risperidone Long-acting Versus Oral Risperidone in Patients With Schizophrenia and Alcohol Use Disorder |
| NCT00137020 | PHASE4 | COMPLETED | Clinical Effect Of Cross Titration Of Antipsychotics With Ziprasidone In Schizophrenia Or Schizoaffective Disorder |
Related Atlas pages
- Associated diseases: pancreatitis, gallbladder disease 1, progressive familial intrahepatic cholestasis type 3, cholestasis, intrahepatic, of pregnancy, 3
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): cholestasis, intrahepatic, of pregnancy, 3, familial intrahepatic cholestasis, gallbladder disease 1, gallbladder neoplasm, gallstones, intrahepatic cholestasis, malignant epithelial tumor of ovary, pancreatitis, progressive familial intrahepatic cholestasis, progressive familial intrahepatic cholestasis type 1, progressive familial intrahepatic cholestasis type 3, severe early-childhood-onset retinal dystrophy