ABCB6
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Also known as EST45597umatMTABC3
Summary
ABCB6 (ATP binding cassette subfamily B member 6 (LAN blood group), HGNC:47) is a protein-coding gene on chromosome 2q35, encoding ATP-binding cassette sub-family B member 6 (Q9NP58). ATP-dependent transporter that catalyzes the transport of a broad-spectrum of porphyrins from the cytoplasm to the extracellular space through the plasma membrane or into the vesicle lumen.
This gene encodes a member of the ATP-binding cassette (ABC) transporter superfamily. ABC proteins transport various molecules across extra- and intra-cellular membranes. This protein is a member of the heavy metal importer subfamily and plays a role in porphyrin transport. This gene is the molecular basis of the Langereis (Lan) blood group antigen and mutations in this gene underlie familial pseudohyperkalemia and dyschromatosis universalis hereditaria.
Source: NCBI Gene 10058 — RefSeq curated summary.
At a glance
- Gene–disease (curated): dyschromatosis universalis hereditaria 3 (Strong, GenCC) — +4 more curated relationships
- GWAS associations: 8
- Clinical variants (ClinVar): 333 total — 10 pathogenic, 4 likely-pathogenic
- Phenotypes (HPO): 27
- Druggable target: yes
- MANE Select transcript:
NM_005689
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:47 |
| Approved symbol | ABCB6 |
| Name | ATP binding cassette subfamily B member 6 (LAN blood group) |
| Location | 2q35 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | EST45597, umat, MTABC3 |
| Ensembl gene | ENSG00000115657 |
| Ensembl biotype | protein_coding |
| OMIM | 605452 |
| Entrez | 10058 |
Gene structure
Transcript identifiers
Ensembl transcripts: 23 — 12 protein_coding, 7 retained_intron, 4 nonsense_mediated_decay
ENST00000265316, ENST00000295750, ENST00000417678, ENST00000443805, ENST00000448398, ENST00000452545, ENST00000485773, ENST00000487380, ENST00000492543, ENST00000492953, ENST00000494639, ENST00000496984, ENST00000497882, ENST00000856959, ENST00000856960, ENST00000856961, ENST00000856962, ENST00000856963, ENST00000958199, ENST00000958200, ENST00000958201, ENST00000958202, ENST00000958203
RefSeq mRNA: 2 — MANE Select: NM_005689
NM_001349828, NM_005689
CCDS: CCDS2436, CCDS86920
Canonical transcript exons
ENST00000265316 — 19 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000786005 | 219216652 | 219216832 |
| ENSE00001142630 | 219218125 | 219218958 |
| ENSE00003479814 | 219210711 | 219210823 |
| ENSE00003484735 | 219210381 | 219210475 |
| ENSE00003485970 | 219212387 | 219212491 |
| ENSE00003531941 | 219214389 | 219214498 |
| ENSE00003585746 | 219210230 | 219210298 |
| ENSE00003588841 | 219213008 | 219213065 |
| ENSE00003602112 | 219213439 | 219213502 |
| ENSE00003608587 | 219215997 | 219216180 |
| ENSE00003616606 | 219216364 | 219216465 |
| ENSE00003617329 | 219213826 | 219213951 |
| ENSE00003617678 | 219213241 | 219213326 |
| ENSE00003624577 | 219209772 | 219210046 |
| ENSE00003651399 | 219210934 | 219211108 |
| ENSE00003655022 | 219214121 | 219214186 |
| ENSE00003655829 | 219213590 | 219213666 |
| ENSE00003691860 | 219217670 | 219217807 |
| ENSE00003694655 | 219214961 | 219215082 |
Expression profiles
Bgee: expression breadth ubiquitous, 140 present calls, max score 94.95.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 6.0216 / max 96.2773, expressed in 1592 samples.
FANTOM5 promoters (6 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 34036 | 2.6970 | 1105 |
| 34035 | 1.6187 | 885 |
| 34034 | 0.8187 | 508 |
| 34037 | 0.6394 | 386 |
| 34033 | 0.2325 | 103 |
| 34032 | 0.0153 | 8 |
Top tissues by expression
140 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| right ovary | UBERON:0002118 | 94.95 | gold quality |
| right hemisphere of cerebellum | UBERON:0014890 | 94.57 | gold quality |
| left ovary | UBERON:0002119 | 94.56 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 94.39 | gold quality |
| cerebellar cortex | UBERON:0002129 | 94.31 | gold quality |
| cerebellum | UBERON:0002037 | 94.30 | gold quality |
| right lobe of thyroid gland | UBERON:0001119 | 93.93 | gold quality |
| nucleus accumbens | UBERON:0001882 | 93.90 | gold quality |
| ovary | UBERON:0000992 | 93.78 | gold quality |
| hypothalamus | UBERON:0001898 | 93.40 | gold quality |
| right frontal lobe | UBERON:0002810 | 93.22 | gold quality |
| left testis | UBERON:0004533 | 93.22 | gold quality |
| left lobe of thyroid gland | UBERON:0001120 | 93.19 | gold quality |
| caudate nucleus | UBERON:0001873 | 93.04 | gold quality |
| Brodmann (1909) area 9 | UBERON:0013540 | 93.02 | gold quality |
| hindlimb stylopod muscle | UBERON:0004252 | 92.94 | gold quality |
| right testis | UBERON:0004534 | 92.94 | gold quality |
| putamen | UBERON:0001874 | 92.82 | gold quality |
| testis | UBERON:0000473 | 92.61 | gold quality |
| lower esophagus mucosa | UBERON:0035834 | 92.60 | gold quality |
| brain | UBERON:0000955 | 92.56 | gold quality |
| anterior cingulate cortex | UBERON:0009835 | 92.54 | gold quality |
| adenohypophysis | UBERON:0002196 | 92.37 | gold quality |
| frontal cortex | UBERON:0001870 | 92.34 | gold quality |
| gastrocnemius | UBERON:0001388 | 92.33 | gold quality |
| thyroid gland | UBERON:0002046 | 92.25 | gold quality |
| Ammon’s horn | UBERON:0001954 | 92.23 | gold quality |
| cerebral cortex | UBERON:0000956 | 92.22 | gold quality |
| pituitary gland | UBERON:0000007 | 92.20 | gold quality |
| dorsolateral prefrontal cortex | UBERON:0009834 | 92.16 | gold quality |
Single-cell (SCXA)
Detected in 2 experiment(s), a significant marker in 2.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-GEOD-75367 | yes | 286.45 |
| E-ANND-3 | yes | 6.49 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): AHR, HNF1B, HSF1, MYC
miRNA regulators (miRDB)
11 targeting ABCB6, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-29A-3P | 100.00 | 73.11 | 1835 |
| HSA-MIR-29B-3P | 100.00 | 73.18 | 1833 |
| HSA-MIR-29C-3P | 100.00 | 73.15 | 1833 |
| HSA-MIR-5682 | 99.89 | 72.56 | 1005 |
| HSA-MIR-204-5P | 99.79 | 71.62 | 2439 |
| HSA-MIR-211-5P | 99.79 | 71.65 | 2440 |
| HSA-MIR-4755-5P | 99.71 | 70.34 | 2716 |
| HSA-MIR-5006-3P | 99.71 | 70.26 | 2728 |
| HSA-MIR-3679-3P | 99.64 | 69.88 | 1599 |
| HSA-MIR-7113-5P | 97.88 | 67.33 | 1735 |
| HSA-MIR-6793-3P | 97.66 | 65.78 | 1084 |
Literature-anchored findings (GeneRIF, showing 40)
- study of C-terminal nucleotide-binding domain of ABCB6 in nucleotide-free & ADP-bound states by NMR & homology modelling; results revealed localised dynamic cooperativity, which was proposed for a prokaryotic ABC MJ1267, also exists in a eukaryotic ABC (PMID:16791740)
- ABCB6 is uniquely located in the outer mitochondrial membrane and is required for mitochondrial porphyrin uptake (PMID:17006453)
- ABCB6 exists in two molecular weight forms, is localized to both the outer mitochondrial membrane and the plasma membrane, and plays a functional role in the plasma membrane. (PMID:17661442)
- ather, it localized in the ER-derived and brefeldin A-sensitive perinuclear compartments, mainly in the Golgi apparatus. (PMID:18279659)
- overall structure of ABCB6 is L-shaped and consists of two lobes, consistent with other reported nucleotide-binding domain structures (PMID:20823549)
- Conserved intramolecular disulfide bond is critical to trafficking and fate of ATP-binding cassette (ABC) transporters ABCB6 and sulfonylurea receptor 1 (SUR1)/ABCC8. (PMID:21199866)
- ABCB6 plays a role in cell growth and proliferation by targeting the cell cycle. (PMID:21849266)
- The results demonstrated that ABCB6 mutations cause ocular coloboma. (PMID:22226084)
- It was established that ABCB6 encodes a new blood group system (Langereis, Lan). Targeted sequencing of ABCB6 in 12 unrelated individuals of the Lan(-) blood type identified 10 different ABCB6 null mutations. (PMID:22246506)
- Knock-down studies demonstrate that ABCB6 function is not required for de novo heme biosynthesis in differentiating K562 cells, excluding this ABC transporter as a key regulator of porphyrin synthesis. (PMID:22655043)
- High expression levels of ABCB6 are associated with glioma. (PMID:22688660)
- Polycyclic aromatic hydrocarbons (PAHs) mediate transcriptional activation of the ATP binding cassette transporter ABCB6 gene via the aryl hydrocarbon receptor (AhR) (PMID:22761424)
- p.Arg192Trp is the first ABCB6 missense mutation causing the Lan- blood type and appears to be a relatively frequent cause of this rare blood type. (PMID:22958180)
- the two missense mutations in residue 375 of the ABCB6 polypeptide found in affected individuals of families with chromosome 2-linked FP could contribute to the red cell K(+) leak characteristic of this condition. (PMID:23180570)
- Aberrant mRNA and DNA methylation levels of ABCB6 may serve as useful predictive biomarkers for early intrahepatic recurrence of HCV-related hepatocellular carcinoma (PMID:23483087)
- These findings suggest that ABCB6 may be a physiological factor for skin pigmentation. (PMID:23519333)
- To date, 19 ABCB6 alleles that encode Lan- or Lan+(w) /-, or Lan+(w) phenotypes have been described. (PMID:23763549)
- results suggest a direct interaction between mitochondrial ABCB6 and its transport substrates that is critical for the activity of the transporter (PMID:23792964)
- Data suggest that expression of ABCB6 varies widely in bone marrow and blood samples from patients with acute myeloid leukemia. [LETTER] (PMID:23793916)
- No significant associations were detected for the ABCB6 or ABCG1 gene. (PMID:24192121)
- data add new variants to the repertoire of ABCB6 mutations with dyschromatosis universalis hereditaria. (PMID:24224009)
- We describe eight new mutations in ABCB6 of which seven, including three missense mutations, underlie the Lan- phenotype and determine that a complete gene deletion of ABCG2 or ABCB6 is not responsible for the Jr(a-) or Lan- phenotype, respectively. (PMID:24456066)
- Data indicate ATP-binding cassette sub-family B member 6 (ABCB6) as the disease candidate gene by discovering a coding mutation (c.1358C>T; p.Ala453Val) that co-segregates with the dyschromatosis universalis hereditaria phenotype. (PMID:24498303)
- a heterozygous substitution Arg723Gln in the ATP-binding cassette, Subfamily B, Member 6 protein that segregated with FP in the Cardiff family and was also present in both blood donors. Arg723Gln is listed in human variation databases (PMID:24947683)
- Expression of ABCB6 is related to resistance to 5-FU, SN-38 and vincristine. (PMID:25202056)
- Identified two novel ABCB6 mutations in two Chinese families affected with dyschromatosis universalis hereditaria (DUH), underscoring the causative role of the ABCB6 mutations in the molecular pathogenesis of DUH. (PMID:25288164)
- genetic variants linked to lower or absent cell surface expression of ABCB6/Langereis may be more common than previously thought. (PMID:25360778)
- These data indicate that the expression of ABCB6 in plasma membrane is important for porphyrin accumulation after ALA administration, including hypoxic conditions. (PMID:25573285)
- Data suggest N-terminal transmembrane domain of ABCB6 functions as independent folding unit and plays crucial role in lysosomal (rather than plasma membrane) targeting of ABCB6; this domain is dispensable for dimerization and ATP binding/hydrolysis. (PMID:25627919)
- ABCB6 missense mutations in red blood cells from subjects with familial pseudohyperkalemia show elevated potassium ion efflux. (PMID:27151991)
- Severely affected porphyria patients harbor variant alleles in the ABCB6 gene. (PMID:27507172)
- The human ABCB6 protein is the functional homologue of HMT-1 proteins mediating cadmium detoxification in Schizosaccharomyces pombe and Caenorhabditis elegans. (PMID:31053883)
- Investigated whether 9 SNPs in ABCB1 (rs6946119, rs28401781, rs4148739, and rs3747802), ABCB6 (rs1109866, rs1109867, rs3731885, and rs3755047), and ABCG1 (rs182694); findings support an association between ABCG1 polymorphism and schizophrenia in a Han Chinese population; no association between schizophrenia and a specific allele or genotype among the SNPs of ABCB1 and ABCB6 was observed (PMID:31189171)
- UBE2L6 is Involved in Cisplatin Resistance by Regulating the Transcription of ABCB6. (PMID:32329696)
- Systematic analysis of the ABC transporter family in hepatocellular carcinoma reveals the importance of ABCB6 in regulating ferroptosis. (PMID:32710948)
- Cryo-electron microscopy structure of human ABCB6 transporter. (PMID:33007128)
- Substrate specificity of Chondroitinase ABC I based on analyses of biochemical reactions and crystal structures in complex with disaccharides. (PMID:34392362)
- ABCB6 polymorphisms are not overly represented in patients with porphyria. (PMID:34724702)
- ABCB6 knockdown suppresses melanogenesis through the GSK3-beta/beta-catenin signaling axis in human melanoma and melanocyte cell lines. (PMID:35461746)
- Association of UBE2L6 and ABCB6 Expression With Platinum Resistance in Serous Ovarian Carcinoma. (PMID:37500176)
Cross-species orthologs
6 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | abcb6a | ENSDARG00000063297 |
| danio_rerio | abcb6b | ENSDARG00000074254 |
| mus_musculus | Abcb6 | ENSMUSG00000026198 |
| rattus_norvegicus | Abcb6 | ENSRNOG00000018697 |
| drosophila_melanogaster | Hmt-1 | FBGN0038376 |
| caenorhabditis_elegans | WBGENE00001815 |
Paralogs (10): ABCB5 (ENSG00000004846), ABCB4 (ENSG00000005471), ABCB11 (ENSG00000073734), ABCB1 (ENSG00000085563), ABCB7 (ENSG00000131269), ABCB10 (ENSG00000135776), ABCB9 (ENSG00000150967), TAP1 (ENSG00000168394), ABCB8 (ENSG00000197150), TAP2 (ENSG00000204267)
Protein
Protein identifiers
ATP-binding cassette sub-family B member 6 — Q9NP58 (reviewed: Q9NP58)
Alternative names: ABC-type heme transporter ABCB6, Mitochondrial ABC transporter 3, P-glycoprotein-related protein, Ubiquitously-expressed mammalian ABC half transporter
All UniProt accessions (5): Q9NP58, H7C049, H7C1R6, H7C245, H7C3Z0
UniProt curated annotations — full annotation on UniProt →
Function. ATP-dependent transporter that catalyzes the transport of a broad-spectrum of porphyrins from the cytoplasm to the extracellular space through the plasma membrane or into the vesicle lumen. May also function as an ATP-dependent importer of porphyrins from the cytoplasm into the mitochondria, in turn may participate in the de novo heme biosynthesis regulation and in the coordination of heme and iron homeostasis during phenylhydrazine stress. May also play a key role in the early steps of melanogenesis producing PMEL amyloid fibrils. In vitro, it confers to cells a resistance to toxic metal such as arsenic and cadmium and against chemotherapeutics agent such as 5-fluorouracil, SN-38 and vincristin. In addition may play a role in the transition metal homeostasis.
Subunit / interactions. Homodimer.
Subcellular location. Cell membrane. Mitochondrion outer membrane. Endoplasmic reticulum membrane. Golgi apparatus membrane. Endosome membrane. Lysosome membrane. Late endosome membrane. Early endosome membrane. Secreted. Extracellular exosome. Mitochondrion. Endosome. Multivesicular body membrane. Melanosome membrane.
Tissue specificity. Widely expressed. High expression is detected in the retinal epithelium. Expressed in mature erythrocytes.
Post-translational modifications. N-glycosylated.
Disease relevance. Microphthalmia/Coloboma 7 (MCOPCB7) [MIM:614497] A disorder of eye formation, ranging from small size of a single eye to complete bilateral absence of ocular tissues. Ocular abnormalities like opacities of the cornea and lens, scaring of the retina and choroid, and other abnormalities may also be present. Ocular colobomas are a set of malformations resulting from abnormal morphogenesis of the optic cup and stalk, and the fusion of the fetal fissure (optic fissure). The disease is caused by variants affecting the gene represented in this entry. Dyschromatosis universalis hereditaria 3 (DUH3) [MIM:615402] An autosomal dominant pigmentary genodermatosis characterized by a mixture of hyperpigmented and hypopigmented macules distributed randomly over the body, that appear in infancy or early childhood. The trunk and extremities are the dominant sites of abnormal pigmentation. Facial lesions can be seen in 50% of affected individuals, but involvement of palms and soles is unusual. Abnormalities of hair and nails have also been reported. Dyschromatosis universalis hereditaria may be associated with abnormalities of dermal connective tissue, nerve tissue, or other systemic complications. The disease is caused by variants affecting the gene represented in this entry. Pseudohyperkalemia, familial, 2, due to red cell leak (PSHK2) [MIM:609153] A dominantly inherited condition characterized by increased serum potassium levels, measured in whole-blood specimens stored at or below room temperature. This condition is not accompanied by clinical symptoms or biological signs except for borderline abnormalities of red cell shape. The disease is caused by variants affecting the gene represented in this entry. Defects in ABCB6 may be the cause of a severe porphyria. Affected individuals show higher urinary porphyrin concentrations.
Activity regulation. ATPase activity is inhibited by MgATP with an IC(50) of 1.03 mM and up-regulated by coporphyrin III> hemin > protoporphyrin IX. ATPase activity for hemin is up-regulated by glutathione. The ATPase activity is impaired by increasing copper concentrations (0-300 uM). The ATPase activity is stimulated in presence of glutathione for increasing copper concentrations (0-300 uM).
Domain organisation. Contains two independently folding units, the N-terminal transmembrane domain (residues 1-205) and the ABC-core domain (206-842) are respectively responsible for the lysosomal targeting and the ATPase activity.
Induction. Up-regulated by cellular porphyrins (at protein level). Up-regulated during erythroid differentiation (at protein level). Induced by sodium arsenite in a dose-dependent manner.
Polymorphism. Genetic variations in ABCB6 define the Langereis blood group system (LAN) [MIM:111600]. Individuals with Lan(-) blood group lack the Lan antigen on their red blood cells. These individuals may have anti-Lan antibodies in their serum, which can cause transfusion reactions or hemolytic disease of the fetus or newborn. The Lan(-) blood group is only clinically significant in transfusion settings or during pregnancy; otherwise Lan(-) individuals have no clinical features.
Similarity. Belongs to the ABC transporter superfamily. ABCB family. Heavy Metal importer (TC 3.A.1.210) subfamily.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q9NP58-1 | 1 | yes |
| Q9NP58-4 | 2 |
RefSeq proteins (2): NP_001336757, NP_005680* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR003439 | ABC_transporter-like_ATP-bd | Domain |
| IPR003593 | AAA+_ATPase | Domain |
| IPR011527 | ABC1_TM_dom | Domain |
| IPR017871 | ABC_transporter-like_CS | Conserved_site |
| IPR027417 | P-loop_NTPase | Homologous_superfamily |
| IPR032410 | ABCB6_N | Domain |
| IPR036640 | ABC1_TM_sf | Homologous_superfamily |
| IPR039421 | Type_1_exporter | Family |
Pfam: PF00005, PF00664, PF16185
Catalyzed reactions (Rhea), 8 shown:
- heme b(in) + ATP + H2O = heme b(out) + ADP + phosphate + H(+) (RHEA:19261)
- protoporphyrin IX(in) + ATP + H2O = protoporphyrin IX(out) + ADP + phosphate + H(+) (RHEA:61336)
- pheophorbide a(in) + ATP + H2O = pheophorbide a(out) + ADP + phosphate + H(+) (RHEA:61360)
- coproporphyrin III(in) + ATP + H2O = coproporphyrin III(out) + ADP + phosphate + H(+) (RHEA:66664)
- coproporphyrinogen III(in) + ATP + H2O = coproporphyrinogen III(out) + ADP + phosphate + H(+) (RHEA:66680)
- coproporphyrin I(in) + ATP + H2O = coproporphyrin I(out) + ADP + phosphate + H(+) (RHEA:66768)
- uroporphyrin I(in) + ATP + H2O = uroporphyrin I(out) + ADP + phosphate + H(+) (RHEA:66772)
- uroporphyrin III(in) + ATP + H2O = uroporphyrin III(out) + ADP + phosphate + H(+) (RHEA:66776)
UniProt features (123 total): helix 27, sequence variant 22, mutagenesis site 19, strand 16, topological domain 12, transmembrane region 11, sequence conflict 5, domain 2, region of interest 2, binding site 2, chain 1, turn 1, glycosylation site 1, disulfide bond 1, splice variant 1
Structure
Experimental structures (PDB)
16 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 3NH6 | X-RAY DIFFRACTION | 2 |
| 3NH9 | X-RAY DIFFRACTION | 2.1 |
| 3NHA | X-RAY DIFFRACTION | 2.1 |
| 3NHB | X-RAY DIFFRACTION | 2.15 |
| 9DBQ | ELECTRON MICROSCOPY | 2.9 |
| 8YR4 | ELECTRON MICROSCOPY | 3.1 |
| 8YR3 | ELECTRON MICROSCOPY | 3.2 |
| 7DNY | ELECTRON MICROSCOPY | 3.4 |
| 7EKL | ELECTRON MICROSCOPY | 3.5 |
| 8FWK | ELECTRON MICROSCOPY | 3.5 |
| 7DNZ | ELECTRON MICROSCOPY | 3.6 |
| 7EKM | ELECTRON MICROSCOPY | 3.6 |
| 8K7B | ELECTRON MICROSCOPY | 3.9 |
| 8K7C | ELECTRON MICROSCOPY | 3.9 |
| 7D7R | ELECTRON MICROSCOPY | 4 |
| 7D7N | ELECTRON MICROSCOPY | 5.2 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q9NP58-F1 | 83.17 | 0.43 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Ligand- & substrate-binding residues (2): 599; 623–634
Disulfide bonds (1): 8–26
Glycosylation sites (1): 6
Mutagenesis-validated functional residues (19):
| Position | Phenotype |
|---|---|
| 6 | loss of n-glycosylation. loss of n-glycosylation; when associated with q-447; q-498; q-677 and q-775. does not affect su |
| 8 | loss of n-glycosylation. |
| 8 | does not affect substrate binding. does not affect n-glycosylation. impairs endoplasmic reticulum exit. impairs endoplas |
| 26 | decreases protein expression. affects protein stability. loss of ability to stimulate porphyrin synthesis. |
| 26 | decreases protein expression. impairs endoplasmic reticulum exit; when associated with c-8. affects protein stability. |
| 50 | increases migration in the absence of dtt; when associated with a-120. reduces migration in with the presence of dtt; wh |
| 120 | increases migration in the absence of dtt; when associated with a-50. reduces migration in with the presence of dtt; whe |
| 286 | loss of substrate-stimulate atpase activity. impairs protein expression. |
| 447 | does not affect n-glycosylation. does not affect n-glycosylation; when associated with q-498; q-677 and q-775. does not |
| 498 | does not affect n-glycosylation. does not affect n-glycosylation; when associated with q-447; q-677 and q-775. does not |
| 531 | loss of substrate-stimulate atpase activity. impairs protein expression. |
| 542 | loss of substrate-stimulate atpase activity. |
| 546 | loss of substrate-stimulate atpase activity. impairs protein expression. |
| 546 | does not affect substrate-stimulate atpase activity. |
| 629 | abolishes atp hydrolysis. abolishes coproporphyrin iii transport. |
| 629 | does not affect subcellular location in early melanosome and lysosome. does not rescue the normal amyloid fibril formati |
| 677 | does not affect n-glycosylation. does not affect n-glycosylation; when associated with q-447; q-498; and q-775. does not |
| 775 | does not affect n-glycosylation. does not affect n-glycosylation; when associated with q-447; q-498 and q-677. does not |
Function
Pathways and Gene Ontology
Reactome pathways
7 pathways
| ID | Pathway |
|---|---|
| R-HSA-1369007 | Mitochondrial ABC transporters |
| R-HSA-5683371 | Defective ABCB6 causes MCOPCB7 |
| R-HSA-1643685 | Disease |
| R-HSA-382551 | Transport of small molecules |
| R-HSA-382556 | ABC-family protein mediated transport |
| R-HSA-5619084 | ABC transporter disorders |
| R-HSA-5619115 | Disorders of transmembrane transporters |
MSigDB gene sets: 263 (showing top):
TGGTGCT_MIR29A_MIR29B_MIR29C, AP1_01, KAAB_FAILED_HEART_ATRIUM_DN, GOBP_IRON_COORDINATION_ENTITY_TRANSPORT, GOCC_VACUOLAR_MEMBRANE, GOBP_TRANSITION_METAL_ION_TRANSPORT, GOBP_VESICLE_ORGANIZATION, GOBP_CELLULAR_RESPONSE_TO_CADMIUM_ION, MENSE_HYPOXIA_UP, GOBP_INTRACELLULAR_IRON_ION_HOMEOSTASIS, DACOSTA_UV_RESPONSE_VIA_ERCC3_UP, IVANOVA_HEMATOPOIESIS_MATURE_CELL, GOBP_CELLULAR_PIGMENTATION, GOBP_TETRAPYRROLE_BIOSYNTHETIC_PROCESS, GOBP_IRON_ION_TRANSPORT
GO Biological Process (14): porphyrin-containing compound metabolic process (GO:0006778), porphyrin-containing compound biosynthetic process (GO:0006779), intracellular copper ion homeostasis (GO:0006878), intracellular iron ion homeostasis (GO:0006879), brain development (GO:0007420), heme transport (GO:0015886), tetrapyrrole metabolic process (GO:0033013), heme transmembrane transport (GO:0035351), heme metabolic process (GO:0042168), skin development (GO:0043588), transmembrane transport (GO:0055085), cellular detoxification of cadmium ion (GO:0098849), melanosome assembly (GO:1903232), iron ion transmembrane transport (GO:0034755)
GO Molecular Function (9): ATP binding (GO:0005524), ABC-type heme transporter activity (GO:0015439), efflux transmembrane transporter activity (GO:0015562), ATP hydrolysis activity (GO:0016887), heme binding (GO:0020037), tetrapyrrole binding (GO:0046906), ABC-type transporter activity (GO:0140359), nucleotide binding (GO:0000166), heme transmembrane transporter activity (GO:0015232)
GO Cellular Component (26): Golgi membrane (GO:0000139), nucleoplasm (GO:0005654), mitochondrion (GO:0005739), mitochondrial envelope (GO:0005740), mitochondrial outer membrane (GO:0005741), lysosomal membrane (GO:0005765), endosome (GO:0005768), vacuolar membrane (GO:0005774), endoplasmic reticulum (GO:0005783), endoplasmic reticulum membrane (GO:0005789), Golgi apparatus (GO:0005794), cytosol (GO:0005829), plasma membrane (GO:0005886), early endosome membrane (GO:0031901), multivesicular body membrane (GO:0032585), melanosome membrane (GO:0033162), endolysosome membrane (GO:0036020), ATP-binding cassette (ABC) transporter complex (GO:0043190), extracellular exosome (GO:0070062), sperm midpiece (GO:0097225), sperm principal piece (GO:0097228), extracellular region (GO:0005576), lysosome (GO:0005764), endosome membrane (GO:0010008), membrane (GO:0016020), late endosome membrane (GO:0031902)
Reactome top-level categories
Rollup of top-5 pathways:
| Category | Pathways |
|---|---|
| ABC-family protein mediated transport | 1 |
| ABC transporter disorders | 1 |
| Transport of small molecules | 1 |
| Disorders of transmembrane transporters | 1 |
| Disease | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cytoplasm | 4 |
| cellular anatomical structure | 3 |
| intracellular membrane-bounded organelle | 3 |
| endomembrane system | 3 |
| porphyrin-containing compound metabolic process | 2 |
| intracellular monoatomic cation homeostasis | 2 |
| animal organ development | 2 |
| heme transport | 2 |
| transmembrane transporter activity | 2 |
| bounding membrane of organelle | 2 |
| endosome membrane | 2 |
| tetrapyrrole metabolic process | 1 |
| tetrapyrrole biosynthetic process | 1 |
| copper ion homeostasis | 1 |
| inorganic ion homeostasis | 1 |
| central nervous system development | 1 |
| head development | 1 |
| nitrogen compound transport | 1 |
| iron coordination entity transport | 1 |
| metabolic process | 1 |
| iron ion transmembrane transport | 1 |
| pigment metabolic process | 1 |
| transport | 1 |
| cellular process | 1 |
| cellular response to cadmium ion | 1 |
| detoxification of cadmium ion | 1 |
| cellular detoxification of metal ion | 1 |
| melanosome organization | 1 |
| organelle assembly | 1 |
| iron ion transport | 1 |
| monoatomic cation transmembrane transport | 1 |
| adenyl ribonucleotide binding | 1 |
| purine ribonucleoside triphosphate binding | 1 |
| heme transmembrane transporter activity | 1 |
| heme transmembrane transport | 1 |
| ABC-type transporter activity | 1 |
| ribonucleoside triphosphate phosphatase activity | 1 |
| ATP-dependent activity | 1 |
| tetrapyrrole binding | 1 |
| binding | 1 |
Protein interactions and networks
STRING
1302 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| ABCB6 | FECH | P22830 | 737 |
| ABCB6 | PPOX | P50336 | 666 |
| ABCB6 | SLC25A38 | Q96DW6 | 664 |
| ABCB6 | TFRC | P02786 | 648 |
| ABCB6 | ABCF2 | Q9UG63 | 643 |
| ABCB6 | CPOX | P36551 | 636 |
| ABCB6 | UROS | P10746 | 629 |
| ABCB6 | ABCE1 | P61221 | 623 |
| ABCB6 | UROD | P06132 | 613 |
| ABCB6 | SLC25A37 | Q9NYZ2 | 612 |
| ABCB6 | FLVCR1 | Q9Y5Y0 | 609 |
| ABCB6 | ABCF3 | Q9NUQ8 | 575 |
| ABCB6 | BCS1L | Q9Y276 | 569 |
| ABCB6 | ALAD | P13716 | 548 |
| ABCB6 | SLC48A1 | Q6P1K1 | 517 |
IntAct
75 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| IFT27 | IFT56 | psi-mi:“MI:0914”(association) | 0.690 |
| AUP1 | APOB | psi-mi:“MI:0914”(association) | 0.610 |
| DPEP1 | ILVBL | psi-mi:“MI:0914”(association) | 0.530 |
| MRAP2 | GOLIM4 | psi-mi:“MI:0914”(association) | 0.530 |
| MRAP2 | PODXL | psi-mi:“MI:0914”(association) | 0.530 |
| HAX1 | CHEK1 | psi-mi:“MI:0914”(association) | 0.530 |
| ARMC6 | SLC27A2 | psi-mi:“MI:0914”(association) | 0.530 |
| SPCS3 | ENTPD6 | psi-mi:“MI:0914”(association) | 0.530 |
| SLC6A8 | ILVBL | psi-mi:“MI:0914”(association) | 0.530 |
| TOLLIP | IRAK2 | psi-mi:“MI:0914”(association) | 0.500 |
| pipB2 | SCD | psi-mi:“MI:0914”(association) | 0.460 |
| sseJ | AGPS | psi-mi:“MI:0914”(association) | 0.460 |
| SDCBP | ABCB6 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| TSG101 | ABCB6 | psi-mi:“MI:0915”(physical association) | 0.370 |
| HAX1 | psi-mi:“MI:0914”(association) | 0.350 | |
| TSPO | psi-mi:“MI:0914”(association) | 0.350 | |
| ESR1 | ESYT2 | psi-mi:“MI:0914”(association) | 0.350 |
| PA | ESYT2 | psi-mi:“MI:0914”(association) | 0.350 |
| pipB2 | PLOD2 | psi-mi:“MI:0914”(association) | 0.350 |
| sseL | PLEKHG3 | psi-mi:“MI:0914”(association) | 0.350 |
| POMK | ESYT2 | psi-mi:“MI:0914”(association) | 0.350 |
| Npc1 | ESYT2 | psi-mi:“MI:0914”(association) | 0.350 |
| IGHM | ESYT2 | psi-mi:“MI:0914”(association) | 0.350 |
| TTYH1 | TMEM223 | psi-mi:“MI:0914”(association) | 0.350 |
| RAMP2 | GXYLT2 | psi-mi:“MI:0914”(association) | 0.350 |
| CLEC2D | TMEM120B | psi-mi:“MI:0914”(association) | 0.350 |
| KLRC1 | METTL15 | psi-mi:“MI:0914”(association) | 0.350 |
| TMEM59 | GPR89A | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (103): ABCB6 (Affinity Capture-MS), ABCB6 (Affinity Capture-MS), ABCB6 (Affinity Capture-MS), ABCB6 (Affinity Capture-MS), ABCB6 (Affinity Capture-MS), ABCB6 (Affinity Capture-MS), ABCB6 (Affinity Capture-MS), ABCB6 (Affinity Capture-MS), ABCB6 (Affinity Capture-MS), ABCB6 (Affinity Capture-MS), ABCB6 (Affinity Capture-MS), ABCB6 (Affinity Capture-MS), ABCB6 (Affinity Capture-MS), ABCB6 (Affinity Capture-MS), ABCB6 (Affinity Capture-MS)
ESM2 similar proteins: A0A125QXJ1, D3ZHR2, E7F6F7, G5EFD4, H2LNR5, O15440, O70595, O75027, P21441, P21958, P33897, P36370, P48410, P70170, P82451, P9WEL8, Q02592, Q08D64, Q09427, Q09428, Q09429, Q10185, Q2UPC0, Q42093, Q4WA92, Q4WPP6, Q61102, Q63120, Q63563, Q704E8, Q751N2, Q7DM58, Q8LPQ6, Q8RY46, Q92887, Q96J65, Q9C8G9, Q9C8H0, Q9C8H1, Q9DC29
Diamond homologs: A0A125QXJ1, E7F6F7, G5EFD4, H2LNR5, J9VWU3, O14286, O31707, O31708, O70595, O75027, P0C529, P0CL92, P0CL93, P0DKX5, P0DKX6, P40416, P45861, P54719, P55469, P60752, P60753, P63359, P63360, P63398, P71082, P9WQJ2, P9WQJ3, Q02592, Q08D64, Q142P6, Q1BUV6, Q1CA68, Q1CGH0, Q1QX69, Q21NS8, Q2FFM9, Q2G2M9, Q2G506, Q2HIE9, Q2J0F4
SIGNOR signaling
1 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| NFE2L2 | “up-regulates quantity by expression” | ABCB6 | “transcriptional regulation” |
Disease & clinical
Clinical variants and AI predictions
ClinVar
333 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 10 |
| Likely pathogenic | 4 |
| Uncertain significance | 203 |
| Likely benign | 53 |
| Benign | 23 |
Top pathogenic / likely-pathogenic (14)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1180532 | GRCh37/hg19 2q35-36.3(chr2:220056891-227164817)x1 | Pathogenic |
| 1526953 | GRCh37/hg19 2q35-37.3(chr2:219606537-239217703) | Pathogenic |
| 208249 | NM_005689.4(ABCB6):c.1663C>A (p.Gln555Lys) | Pathogenic |
| 218179 | NM_005689.4(ABCB6):c.1124G>A (p.Arg375Gln) | Pathogenic |
| 30482 | NM_005689.4(ABCB6):c.2431C>G (p.Leu811Val) | Pathogenic |
| 549857 | Single allele | Pathogenic |
| 562681 | GRCh37/hg19 2q35-37.3(chr2:219225872-242016876)x3 | Pathogenic |
| 64646 | NM_005689.4(ABCB6):c.1067T>C (p.Leu356Pro) | Pathogenic |
| 64647 | NM_005689.4(ABCB6):c.508A>G (p.Ser170Gly) | Pathogenic |
| 64648 | NM_005689.4(ABCB6):c.1736G>A (p.Gly579Glu) | Pathogenic |
| 218180 | NM_005689.4(ABCB6):c.1123C>T (p.Arg375Trp) | Likely pathogenic |
| 3066330 | NM_005689.4(ABCB6):c.1452+2T>A | Likely pathogenic |
| 3357313 | NM_005689.4(ABCB6):c.1589_1590del (p.Tyr530fs) | Likely pathogenic |
| 4086262 | NM_005689.4(ABCB6):c.1348C>T (p.Arg450Trp) | Likely pathogenic |
SpliceAI
2348 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 2:219210047:C:CC | acceptor_gain | 1.0000 |
| 2:219210299:C:CC | acceptor_gain | 1.0000 |
| 2:219210706:CGCA:C | donor_loss | 1.0000 |
| 2:219210707:GCAC:G | donor_loss | 1.0000 |
| 2:219210708:CA:C | donor_loss | 1.0000 |
| 2:219210710:CC:C | donor_loss | 1.0000 |
| 2:219210851:T:C | acceptor_gain | 1.0000 |
| 2:219210928:TCTCA:T | donor_loss | 1.0000 |
| 2:219210929:CTCAC:C | donor_loss | 1.0000 |
| 2:219210930:TCACC:T | donor_loss | 1.0000 |
| 2:219210931:CA:C | donor_loss | 1.0000 |
| 2:219210933:C:CG | donor_loss | 1.0000 |
| 2:219210933:CCTT:C | donor_gain | 1.0000 |
| 2:219211078:CAA:C | acceptor_gain | 1.0000 |
| 2:219211106:CAC:C | acceptor_gain | 1.0000 |
| 2:219211107:ACC:A | acceptor_loss | 1.0000 |
| 2:219211109:CT:C | acceptor_loss | 1.0000 |
| 2:219213239:AC:A | donor_gain | 1.0000 |
| 2:219213240:CC:C | donor_gain | 1.0000 |
| 2:219213427:C:CA | donor_gain | 1.0000 |
| 2:219213437:A:AC | donor_gain | 1.0000 |
| 2:219213438:C:CC | donor_gain | 1.0000 |
| 2:219213438:CTT:C | donor_gain | 1.0000 |
| 2:219213440:T:TA | donor_gain | 1.0000 |
| 2:219213499:CATC:C | acceptor_gain | 1.0000 |
| 2:219213503:C:CC | acceptor_gain | 1.0000 |
| 2:219213503:CT:C | acceptor_loss | 1.0000 |
| 2:219213666:CCTG:C | acceptor_loss | 1.0000 |
| 2:219213667:C:CA | acceptor_loss | 1.0000 |
| 2:219213668:T:A | acceptor_loss | 1.0000 |
AlphaMissense
5408 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 2:219213614:A:T | L544H | 0.999 |
| 2:219210754:G:T | A738D | 0.998 |
| 2:219210766:C:G | R734P | 0.998 |
| 2:219213626:A:G | L540P | 0.998 |
| 2:219213882:C:G | G508R | 0.998 |
| 2:219213882:C:T | G508R | 0.998 |
| 2:219213901:C:A | Q501H | 0.998 |
| 2:219213901:C:G | Q501H | 0.998 |
| 2:219214398:G:C | N459K | 0.998 |
| 2:219214398:G:T | N459K | 0.998 |
| 2:219215036:C:G | G401R | 0.998 |
| 2:219210761:C:G | A736P | 0.997 |
| 2:219210768:C:A | Q733H | 0.997 |
| 2:219210768:C:G | Q733H | 0.997 |
| 2:219211028:A:C | N683K | 0.997 |
| 2:219211028:A:T | N683K | 0.997 |
| 2:219213614:A:G | L544P | 0.997 |
| 2:219213870:C:G | G512R | 0.997 |
| 2:219213878:A:G | L509P | 0.997 |
| 2:219214405:A:G | L457P | 0.997 |
| 2:219214979:A:G | C420R | 0.997 |
| 2:219215048:C:G | D397H | 0.997 |
| 2:219216027:C:G | R375P | 0.997 |
| 2:219216672:G:T | P283H | 0.997 |
| 2:219210755:C:G | A738P | 0.996 |
| 2:219210783:G:C | S728R | 0.996 |
| 2:219210783:G:T | S728R | 0.996 |
| 2:219210785:T:G | S728R | 0.996 |
| 2:219212465:G:C | S630R | 0.996 |
| 2:219212465:G:T | S630R | 0.996 |
dbSNP variants (sampled 300 via entrez): RS1000591910 (2:219214039 ACACTCGACTAT>A), RS1000818861 (2:219218043 T>C), RS1000917600 (2:219220667 C>G,T), RS1001045027 (2:219211384 G>T), RS1001081778 (2:219215781 G>A), RS1001416834 (2:219217177 G>A), RS1001427121 (2:219211976 G>A), RS1001918004 (2:219211122 A>T), RS1002065045 (2:219211690 G>A,C), RS1002346711 (2:219212653 G>T), RS1003074361 (2:219218491 C>A,T), RS1003087272 (2:219218730 T>A,C,G), RS1003375773 (2:219219246 A>G), RS1003429566 (2:219219460 C>A,G,T), RS1003907383 (2:219214776 C>T)
Disease associations
OMIM: gene MIM:605452 | disease phenotypes: MIM:176000, MIM:177000, MIM:609153, MIM:614497, MIM:615402, MIM:121300, MIM:176200, MIM:603596
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| dyschromatosis universalis hereditaria 3 | Strong | Autosomal dominant |
| dyschromatosis universalis hereditaria | Supportive | Autosomal dominant |
| familial pseudohyperkalemia | Supportive | Autosomal dominant |
| microphthalmia, isolated, with coloboma | Supportive | Autosomal dominant |
| microphthalmia, isolated, with coloboma 7 | Limited | Autosomal dominant |
ClinGen Gene-Disease Validity (2)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| microphthalmia, isolated, with coloboma 7 | Limited | AD |
| dyschromatosis universalis hereditaria 3 | Moderate | AD |
Mondo (10): acute intermittent porphyria (MONDO:0008294), protoporphyria, erythropoietic, 1 (MONDO:0008319), familial pseudohyperkalemia (MONDO:0012204), microphthalmia, isolated, with coloboma 7 (MONDO:0013783), dyschromatosis universalis hereditaria 3 (MONDO:0014169), hereditary coproporphyria (MONDO:0007369), variegate porphyria (MONDO:0008297), polydactyly (MONDO:0021003), dyschromatosis universalis hereditaria (MONDO:0000736), microphthalmia, isolated, with coloboma (MONDO:0000170)
Orphanet (6): Acute intermittent porphyria (Orphanet:79276), Autosomal erythropoietic protoporphyria (Orphanet:79278), Familial pseudohyperkalemia (Orphanet:90044), Colobomatous microphthalmia (Orphanet:98938), Hereditary coproporphyria (Orphanet:79273), Variegate porphyria (Orphanet:79473)
HPO phenotypes
27 total (28 of 27 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000365 | Hearing impairment |
| HP:0000568 | Microphthalmia |
| HP:0000612 | Iris coloboma |
| HP:0000822 | Hypertension |
| HP:0000992 | Cutaneous photosensitivity |
| HP:0001034 | Hypermelanotic macule |
| HP:0001053 | Hypopigmented skin patches |
| HP:0001480 | Freckling |
| HP:0001878 | Hemolytic anemia |
| HP:0001923 | Reticulocytosis |
| HP:0002153 | Hyperkalemia |
| HP:0002378 | Hand tremor |
| HP:0003324 | Generalized muscle weakness |
| HP:0003394 | Muscle spasm |
| HP:0003577 | Congenital onset |
| HP:0003768 | Periodic paralysis |
| HP:0004322 | Short stature |
| HP:0004446 | Stomatocytosis |
| HP:0004802 | Episodic hemolytic anemia |
| HP:0005518 | Increased mean corpuscular volume |
| HP:0005590 | Spotty hypopigmentation |
| HP:0007565 | Multiple cafe-au-lait spots |
| HP:0011463 | Childhood onset |
| HP:0012733 | Macule |
| HP:0020073 | Hypopigmented macule |
| HP:0031613 | Inferior chorioretinal coloboma |
| HP:0010442 | Polydactyly |
GWAS associations
8 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST004619_68 | Reticulocyte fraction of red cells | 2.000000e-20 |
| GCST004622_157 | Reticulocyte count | 1.000000e-21 |
| GCST90002385_462 | High light scatter reticulocyte count | 4.000000e-44 |
| GCST90002386_533 | High light scatter reticulocyte percentage of red cells | 8.000000e-43 |
| GCST90002387_61 | Immature fraction of reticulocytes | 3.000000e-10 |
| GCST90002404_35 | Red cell distribution width | 2.000000e-20 |
| GCST90002405_3 | Reticulocyte count | 3.000000e-49 |
| GCST90002406_70 | Reticulocyte fraction of red cells | 2.000000e-48 |
EFO canonical traits (2, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0007986 | reticulocyte count |
| EFO:0009188 | Red cell distribution width |
MeSH disease descriptors (7)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D046349 | Coproporphyria, Hereditary | C06.552.830.074; C16.320.850.742.074; C17.800.827.742.074; C18.452.811.400.074 |
| D017689 | Polydactyly | C05.660.585.600; C16.131.621.585.600 |
| D017118 | Porphyria, Acute Intermittent | C06.552.830.150; C16.320.850.742.150; C17.800.827.742.150; C18.452.811.400.150 |
| D046350 | Porphyria, Variegate | C06.552.830.625; C16.320.850.742.625; C17.800.827.742.625; C18.452.811.400.625 |
| C535730 | Dyschromatosis universalis hereditaria (supp.) | |
| C537463 | Microphthalmia associated with colobomatous cyst (supp.) | |
| C563785 | Pseudohyperkalemia, Familial, 2, due to Red Cell Leak (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL2007630 (SINGLE PROTEIN)
PharmGKB: 1 entry (VIP=true, CPIC=false)
PharmGKB variants
4 variants.
| Variant | Genes | Level | Score | #Clin annots | Drugs |
|---|---|---|---|---|---|
| rs1109866 | ABCB6 | 0.00 | 0 | ||
| rs1109867 | ABCB6 | 0.00 | 0 | ||
| rs3731885 | ABCB6, ATG9A | 0.00 | 0 | ||
| rs3755047 | ABCB6, ATG9A | 0.00 | 0 |
GtoPdb / IUPHAR curated pharmacology
(IUPHAR/BPS Guide to Pharmacology — expert-curated)
Target class: transporter — ABCB subfamily
Binding affinities (BindingDB)
8 measured of 8 human assays (8 total across all organisms); most potent 8 below. Values come from heterogeneous assays and are not directly comparable.
| Ligand | Measure | Value |
|---|---|---|
| MLS001002340 | EC50 | 210 nM |
| cid_360569 | EC50 | 4140 nM |
| 5-chloro-N-(3-methylphenyl)-2-(phenylmethyl)sulfonyl-4-pyrimidinecarboxamide | EC50 | 21500 nM |
| MLS001116165 | EC50 | 34700 nM |
| MLS001116149 | EC50 | 44200 nM |
| cid_16446684 | EC50 | 62800 nM |
| MLS001116228 | EC50 | 74500 nM |
| cid_16446988 | EC50 | 80400 nM |
CTD chemical–gene interactions
72 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Benzo(a)pyrene | increases expression, increases methylation | 8 |
| sodium arsenite | decreases activity, decreases reaction, increases response to substance, decreases response to substance, decreases expression (+3 more) | 7 |
| Valproic Acid | affects cotreatment, increases expression, affects expression | 6 |
| Cisplatin | affects cotreatment, increases expression, decreases expression, affects response to substance | 4 |
| Tetrachlorodibenzodioxin | affects expression, increases expression | 3 |
| Cyclosporine | decreases expression, increases expression | 3 |
| Cadmium Chloride | decreases reaction, increases response to substance, decreases response to substance, increases abundance, increases expression | 3 |
| bisphenol A | increases expression | 2 |
| cobaltous chloride | increases expression, decreases reaction | 2 |
| ochratoxin A | decreases expression | 2 |
| mercuric bromide | increases expression, affects cotreatment | 2 |
| Zoledronic Acid | decreases expression | 2 |
| Leflunomide | decreases expression | 2 |
| Acetaminophen | decreases expression | 2 |
| Fluorouracil | decreases response to substance, decreases expression | 2 |
| Phenylmercuric Acetate | affects cotreatment, increases expression | 2 |
| Tobacco Smoke Pollution | decreases expression, increases expression | 2 |
| Vincristine | decreases response to substance, affects expression | 2 |
| p-Chloromercuribenzoic Acid | affects cotreatment, increases expression | 2 |
| tungsten carbide | affects cotreatment, increases expression | 1 |
| chloroacetaldehyde | affects expression | 1 |
| methylmercuric chloride | increases expression | 1 |
| deoxynivalenol | decreases expression | 1 |
| sulforaphane | increases expression | 1 |
| zinc chloride | decreases reaction, increases expression | 1 |
| 9,10-dihydro-9,10-dihydroxybenzo(a)pyrene | increases expression | 1 |
| manganese chloride | affects cotreatment, increases abundance, increases expression | 1 |
| glycidamide | increases expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, increases expression | 1 |
| clothianidin | decreases expression | 1 |
ChEMBL screening assays
3 unique, capped per target: 3 functional
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL1963925 | Functional | PUBCHEM_BIOASSAY: Dose Response of Flow Cytometric HTS Screen for inhibitors of the ABC transporter ABCB6 for Cherry Pick01. (Class of assay: confirmatory) | PubChem BioAssay data set |
Cellosaurus cell lines
1 cell lines: 1 finite cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_ZM55 | XP115KO | Finite cell line | Female |
Clinical trials (associated diseases)
46 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT03338816 | PHASE3 | COMPLETED | ENVISION: A Study to Evaluate the Efficacy and Safety of Givosiran (ALN-AS1) in Patients With Acute Hepatic Porphyrias (AHP) |
| NCT00004940 | PHASE3 | COMPLETED | Phase III Study of L-Cysteine in Patients With Erythropoietic Protoporphyria |
| NCT00979745 | PHASE3 | COMPLETED | Phase III Confirmatory Study in Erythropoietic Protoporphyria (EPP) |
| NCT01605136 | PHASE3 | COMPLETED | Phase III Confirmatory Study in Erythropoietic Protoporphyria |
| NCT04053270 | PHASE3 | COMPLETED | Multicentre Phase III Erythropoietic Protoporphyria Study |
| NCT04402489 | PHASE3 | COMPLETED | Study to Evaluate Efficacy, Safety, and Tolerability of MT-7117 in Subjects With Erythropoietic Protoporphyria or X-Linked Protoporphyria |
| NCT04578496 | PHASE3 | COMPLETED | A Safety Extension Study in Patients With Erythropoietic Protoporphyria (EPP) |
| NCT05005975 | PHASE3 | RECRUITING | Extension Study to Evaluate Safety and Tolerability of Oral Dersimelagon (MT-7117) in Subjects With Erythropoietic Protoporphyria (EPP) or X-Linked Protoporphyria (XLP) |
| NCT06144840 | PHASE3 | ACTIVE_NOT_RECRUITING | INcreased Sun Exposure Without Pain In Research Participants With EPP or XLP |
| NCT06910358 | PHASE3 | ACTIVE_NOT_RECRUITING | Study of Bitopertin in Participants With EPP or XLP (APOLLO) |
| NCT02922413 | PHASE2 | TERMINATED | Panhematin for Prevention of Acute Attacks of Porphyria |
| NCT01097044 | PHASE2 | COMPLETED | Phase II Confirmatory Study in Erythropoietic Protoporphyria (EPP) |
| NCT03520036 | PHASE2 | COMPLETED | Study to Evaluate Efficacy, Safety, and Tolerability of MT-7117 in Subjects With Erythropoietic Protoporphyria |
| NCT05020184 | PHASE2 | COMPLETED | Effect of Oral Cimetidine in the Protoporphyrias |
| NCT05308472 | PHASE2 | COMPLETED | Study of Bitopertin to Evaluate the Safety, Tolerability, Efficacy, and PPIX Concentrations in Participants With EPP |
| NCT06971900 | PHASE2 | ENROLLING_BY_INVITATION | GATEWAY: A Phase 2a Study of PORT-77 in Adults With Erythropoietic Protoporphyria |
| NCT05854784 | PHASE2 | COMPLETED | Study to Evaluate the Safety and Efficacy of Afamelanotide in Patients With Variegate Porphyria (VP) |
| NCT02082860 | PHASE1 | COMPLETED | Phase I Gene Therapy Clinical Trial Using the Vector rAAV2/5-PBGD for the Treatment of Acute Intermittent Porphyria |
| NCT02452372 | PHASE1 | COMPLETED | A Phase 1 Study of Givosiran (ALN-AS1) in Patients With Acute Intermittent Porphyria (AIP) |
| NCT02943213 | PHASE1 | COMPLETED | Assessment of Intra-subject Variability in the Bioavailability of Chlorpromazine Hydrochloride |
| NCT03505853 | PHASE1 | COMPLETED | A Study to Investigate the Interaction Between Givosiran and a 5-probe Drug Cocktail in Patients With Acute Intermittent Porphyria (AIP) |
| NCT00418795 | PHASE2/PHASE3 | COMPLETED | Porphozym in the Treatment of Acute Attacks in AIP |
| NCT02949830 | PHASE1/PHASE2 | COMPLETED | A Study to Evaluate Long-term Safety and Clinical Activity of Givosiran (ALN-AS1) in Patient With Acute Intermittent Porphyria (AIP) |
| NCT01568554 | Not specified | COMPLETED | Clinical Diagnosis of Acute Porphyria |
| NCT01617642 | Not specified | ACTIVE_NOT_RECRUITING | Dental Health, Diet, Inflammation and Biomarkers in Patients With Acute Intermittent Porphyria(AIP) |
| NCT02076763 | Not specified | COMPLETED | Observational Study of Acute Intermittent Porphyria Patients |
| NCT02935400 | Not specified | ACTIVE_NOT_RECRUITING | Acute Porphyria Biomarkers for Disease Activity |
| NCT03547297 | Not specified | TERMINATED | INSIGHT-AHP: A Study to Characterize the Prevalence of Acute Hepatic Porphyria (AHP) in Patients With Clinical Presentation and History Consistent With AHP |
| NCT05502133 | Not specified | RECRUITING | Identification of Acute Intermittent Porphyria Modifying Genes |
| NCT06273644 | Not specified | RECRUITING | Clinical Research on Acute Intermittent Porphyria and the Use of Carbohydrate-Rich Diet as a Treatment |
| NCT01422915 | PHASE2/PHASE3 | COMPLETED | Sorbent Therapy of the Cutaneous Porphyrias |
| NCT05883748 | PHASE2/PHASE3 | ENROLLING_BY_INVITATION | HELIOS: Open-Label, Long-Term Extension Study to Investigate the Safety, Tolerability, and Efficacy of DISC-1459 (Bitopertin) in Participants With EPP or XLP |
| NCT06388642 | PHASE1/PHASE2 | COMPLETED | Pharmacokinetics of Afamelanotide in Erythropoietic Protoporphyria Patients |
| NCT00004831 | Not specified | COMPLETED | Study of Cysteine Hydrochloride for Erythropoietic Protoporphyria |
| NCT00206869 | Not specified | UNKNOWN | Does Exercise and Heat Increase the Lightsensibility in Patients With Erythropoietic Protoporphyria |
| NCT01550705 | Not specified | TERMINATED | Effect of Isoniazid on Protoporphyrin Levels in Erythropoietic Protoporphyria |
| NCT01688895 | Not specified | COMPLETED | Erythropoietic Protoporphyrias: Studies of the Natural History, Genotype-Phenotype Correlations, and Psychosocial Impact |
| NCT01880983 | Not specified | COMPLETED | Mitoferrin-1 Expression in Erythropoietic Protoporphyria (Porphyria Rare Disease Clinical Research Consortium (RDCRC)) |
| NCT02979249 | Not specified | COMPLETED | Oral Iron for Erythropoietic Protoporphyrias |
| NCT03682731 | Not specified | COMPLETED | Light Exposure Patterns and Symptoms Among Patients With Erythropoietic Protoporphyria |
Related Atlas pages
- Associated diseases: microphthalmia, isolated, with coloboma 7, dyschromatosis universalis hereditaria 3, dyschromatosis universalis hereditaria, familial pseudohyperkalemia, microphthalmia, isolated, with coloboma
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): acute intermittent porphyria, dyschromatosis universalis hereditaria, dyschromatosis universalis hereditaria 3, familial pseudohyperkalemia, hereditary coproporphyria, microphthalmia, isolated, with coloboma, microphthalmia, isolated, with coloboma 7, polydactyly, protoporphyria, erythropoietic, 1, variegate porphyria