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ABCC2

gene
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Also known as DJSMRP2cMRP

Summary

ABCC2 (ATP binding cassette subfamily C member 2, HGNC:53) is a protein-coding gene on chromosome 10q24.2, encoding ATP-binding cassette sub-family C member 2 (Q92887). ATP-dependent transporter of the ATP-binding cassette (ABC) family that hydrolyzes ATP to enable active transport of endogenous and xenobiotic substrates conjugated with glucuronate, glutathione or sulfate.

The protein encoded by this gene is a member of the superfamily of ATP-binding cassette (ABC) transporters. ABC proteins transport various molecules across extra- and intra-cellular membranes. ABC genes are divided into seven distinct subfamilies (ABC1, MDR/TAP, MRP, ALD, OABP, GCN20, White). This protein is a member of the MRP subfamily which is involved in multi-drug resistance. This protein is expressed in the canalicular (apical) part of the hepatocyte and functions in biliary transport. Substrates include anticancer drugs such as vinblastine; therefore, this protein appears to contribute to drug resistance in mammalian cells. Several different mutations in this gene have been observed in patients with Dubin-Johnson syndrome (DJS), an autosomal recessive disorder characterized by conjugated hyperbilirubinemia.

Source: NCBI Gene 1244 — RefSeq curated summary.

At a glance

  • Gene–disease (curated): Dubin-Johnson syndrome (Strong, GenCC)
  • GWAS associations: 7
  • Clinical variants (ClinVar): 1,337 total — 132 pathogenic, 58 likely-pathogenic (top 2% of genes corpus-wide)
  • GTEx eGene: eQTL in 29 tissues, sQTL in 1 (q < 0.05)
  • Phenotypes (HPO): 12
  • ChEMBL bioactivity: 35 clinical-phase molecules tested; no curated mechanism-of-action drug
  • Constraint (gnomAD): pLI 0.00 (LoF-tolerant), LOEUF 0.98 (unconstrained)
  • MANE Select transcript: NM_000392

Identifiers

Gene identifiers

FieldValue
HGNC IDHGNC:53
Approved symbolABCC2
NameATP binding cassette subfamily C member 2
Location10q24.2
Locus typegene with protein product
StatusApproved
AliasesDJS, MRP2, cMRP
Ensembl geneENSG00000023839
Ensembl biotypeprotein_coding
OMIM601107
Entrez1244

Gene structure

Transcript identifiers

Ensembl transcripts: 14 — 8 nonsense_mediated_decay, 2 retained_intron, 2 protein_coding_CDS_not_defined, 2 protein_coding

MANE Select: ENST00000647814

Transcript support level (Ensembl TSL; 1 = fully mRNA-supported): TSL 2: 2

ENST00000647814, ENST00000370434, ENST00000496621, ENST00000647836, ENST00000648324, ENST00000648523, ENST00000648689, ENST00000649459, ENST00000649493, ENST00000649932, ENST00001001529, ENST00001001530, ENST00001001531, ENST00001001532

RefSeq mRNA: 1 — MANE Select: NM_000392 NM_000392

CCDS: CCDS7484

Canonical transcript exons

ENST00000647814 — 32 exons

ExonStartEnd
ENSE000005024599980038699800563
ENSE000005024629980738499807521
ENSE000007196989978460899784781
ENSE000007197029979223499792359
ENSE000007197149979441399794468
ENSE000007197189979709799797331
ENSE000007197219979920799799370
ENSE000007197539980401999804273
ENSE000007197689980538299805447
ENSE000007197829980808399808229
ENSE000007197879981013499810218
ENSE000007198019981153699811602
ENSE000007198399981301899813144
ENSE000007198569981730899817484
ENSE000007199069981879099818957
ENSE000007199169981908999819269
ENSE000007199309983030799830433
ENSE000007199549983071699830851
ENSE000007199859983161199831830
ENSE000007200319983197799832131
ENSE000007200459983438099834535
ENSE000007201519984379999843900
ENSE000007201679984432299844465
ENSE000007202189984562499845782
ENSE000007202329984696199847127
ENSE000007202859985060299850796
ENSE000011219719984196799842093
ENSE000011219789983609199836290
ENSE000035195519979355199793685
ENSE000035996059979389299793999
ENSE000038338559978264099782877
ENSE000038411759985150299852594

Expression profiles

Bgee: expression breadth ubiquitous, 171 present calls, max score 97.47.

FANTOM5 (CAGE): breadth broad, TPM avg 3.1050 / max 274.9904, expressed in 282 samples.

Highest expression (Bgee): lobe of liver, liver, jejunal mucosa, gall bladder, duodenum.

Genetic regulation across tissues (GTEx eQTL / sQTL)

ABCC2 is an eGene in GTEx v10 — its expression is genetically regulated (eQTL) in 29 tissues and its splicing (sQTL) in 1 (q < 0.05). Strongest associations first; slope = normalized effect of the lead variant’s alternative allele.

showing 20 of 30 significant tissue × QTL associations:

TissueQTLq-valueSlopeLead variant
Liversqtl9.4e-12-1.2210:99819413:CTG:C
Testiseqtl6.8e-10-0.2910:99676961:G:A
Lungeqtl2.8e-06+0.2310:99761926:G:A
Whole Bloodeqtl5.9e-06-0.1210:99762170:G:C
Brain Cerebellumeqtl1.4e-05-0.5310:99698196:C:T
Esophagus Mucosaeqtl1.8e-05-0.2010:99867528:G:T
Cells EBV-transformed lymphocyteseqtl3.8e-05+0.3610:99755559:T:C
Breast Mammary Tissueeqtl8.5e-05-0.2510:99613972:C:T
Artery Aortaeqtl1.4e-04+0.2010:99832563:A:G
Skin Sun Exposed Lower legeqtl2.1e-04+0.1710:99829453:A:AT
Esophagus Musculariseqtl2.5e-04-0.1710:99998104:G:A
Adipose Subcutaneouseqtl2.6e-04-0.2310:99613972:C:T
Colon Transverseeqtl4.4e-04-0.1810:99798989:G:T
Thyroideqtl5.1e-04-0.1910:99638682:A:G
Esophagus Gastroesophageal Junctioneqtl1.1e-03+0.1710:99826621:T:G
Colon Sigmoideqtl1.9e-03-0.1910:99762170:G:C
Brain Hippocampuseqtl2.1e-03+0.4210:99634432:A:AATAG
Brain Cerebellar Hemisphereeqtl6.7e-03-0.2510:99782821:C:T
Spleeneqtl7.6e-03-0.2210:99798989:G:T
Artery Coronaryeqtl8.1e-03-0.4110:99943051:G:T

FANTOM5 promoters

8 alternative TSS:

Promoter IDTPM avgSamples expressed
1065051.1699100
1065011.0755141
1065040.292984
1065080.173660
1065030.171865
1065060.138746
1065020.043125
1065070.039521

Top tissues by expression

showing 100 of 286 tissues by Bgee expression score (0-100, higher = more expressed):

TissueAnatomy IDExpression scoreQuality
right lobe of liverUBERON:000111497.47gold quality
liverUBERON:000210793.84gold quality
jejunal mucosaUBERON:000039992.98gold quality
gall bladderUBERON:000211090.00gold quality
duodenumUBERON:000211489.62gold quality
adult mammalian kidneyUBERON:000008280.63gold quality
ileal mucosaUBERON:000033178.38gold quality
small intestineUBERON:000210877.78gold quality
male germ line stem cell (sensu Vertebrata) in testisCL:0000089 ∩ UBERON:000047377.20gold quality
small intestine Peyer’s patchUBERON:000345477.19gold quality
tibial nerveUBERON:000132377.06gold quality
jejunumUBERON:000211576.46gold quality
metanephros cortexUBERON:001053374.55gold quality
primordial germ cell in gonadCL:0000670 ∩ UBERON:000099174.05gold quality
kidneyUBERON:000211374.01gold quality
sural nerveUBERON:001548871.96gold quality
subcutaneous adipose tissueUBERON:000219069.96gold quality
diaphragmUBERON:000110369.93gold quality
cortex of kidneyUBERON:000122569.25gold quality
mucosa of stomachUBERON:000119968.05gold quality
popliteal arteryUBERON:000225067.41gold quality
tibial arteryUBERON:000761067.40gold quality
gastrocnemiusUBERON:000138867.23gold quality
hindlimb stylopod muscleUBERON:000425267.04gold quality
muscle of legUBERON:000138366.79gold quality
omental fat padUBERON:001041466.36gold quality
nephron tubuleUBERON:000123166.34silver quality
peritoneumUBERON:000235866.29gold quality
tongue squamous epitheliumUBERON:000691966.25gold quality
granulocyteCL:000009465.91gold quality
skin of legUBERON:000151165.67gold quality
metanephrosUBERON:000008165.18gold quality
adipose tissue of abdominal regionUBERON:000780865.07gold quality
spleenUBERON:000210664.92gold quality
body of pancreasUBERON:000115064.77gold quality
muscle organUBERON:000163064.49gold quality
bloodUBERON:000017864.12gold quality
ventricular zoneUBERON:000305363.98gold quality
islet of LangerhansUBERON:000000663.73gold quality
pancreasUBERON:000126463.55gold quality
aortaUBERON:000094763.44gold quality
leukocyteCL:000073863.38gold quality
monocyteCL:000057663.33gold quality
mononuclear cellCL:000084263.21gold quality
bone marrow cellCL:000209263.19silver quality
skin of abdomenUBERON:000141663.17gold quality
adipose tissueUBERON:000101362.74gold quality
left uterine tubeUBERON:000130362.70gold quality
intestineUBERON:000016062.45gold quality
esophagogastric junction muscularis propriaUBERON:003584162.31gold quality
connective tissueUBERON:000238462.17gold quality
triceps brachiiUBERON:000150962.12gold quality
calcaneal tendonUBERON:000370162.01gold quality
olfactory segment of nasal mucosaUBERON:000538661.91gold quality
body of stomachUBERON:000116161.85gold quality
zone of skinUBERON:000001461.72gold quality
lymph nodeUBERON:000002961.45gold quality
left adrenal gland cortexUBERON:003582561.30gold quality
lower esophagus muscularis layerUBERON:003583361.21gold quality
vermiform appendixUBERON:000115461.17gold quality
lower esophagusUBERON:001347361.14gold quality
bone marrowUBERON:000237161.13gold quality
olfactory bulbUBERON:000226460.94gold quality
type B pancreatic cellCL:000016960.68gold quality
skeletal muscle tissueUBERON:000113460.55gold quality
left adrenal glandUBERON:000123460.52gold quality
ganglionic eminenceUBERON:000402360.47gold quality
left coronary arteryUBERON:000162660.44gold quality
right adrenal gland cortexUBERON:003582760.14gold quality
right uterine tubeUBERON:000130259.90gold quality
fundus of stomachUBERON:000116059.87gold quality
coronary arteryUBERON:000162159.86gold quality
stomachUBERON:000094559.72gold quality
caecumUBERON:000115359.70gold quality
gluteal muscleUBERON:000200059.68gold quality
transverse colonUBERON:000115759.60gold quality
adrenal cortexUBERON:000123559.60gold quality
urinary bladderUBERON:000125559.48gold quality
stromal cell of endometriumCL:000225559.36gold quality
adrenal glandUBERON:000236959.30gold quality
muscle tissueUBERON:000238559.26gold quality
right adrenal glandUBERON:000123359.24gold quality
right coronary arteryUBERON:000162559.24gold quality
upper lobe of left lungUBERON:000895259.21gold quality
rectumUBERON:000105259.20gold quality
minor salivary glandUBERON:000183059.17gold quality
descending thoracic aortaUBERON:000234559.13gold quality
muscle layer of sigmoid colonUBERON:003580559.09gold quality
right lungUBERON:000216759.00gold quality
epithelium of bronchusUBERON:000203158.59silver quality
bronchial epithelial cellCL:000232858.46silver quality
thoracic aortaUBERON:000151558.33gold quality
right lobe of thyroid glandUBERON:000111958.32gold quality
ascending aortaUBERON:000149658.31gold quality
esophagusUBERON:000104358.29gold quality
adrenal tissueUBERON:001830358.07gold quality
anatomical systemUBERON:000046757.93gold quality
bronchusUBERON:000218557.93silver quality
material anatomical entityUBERON:000046557.76gold quality
multicellular organismUBERON:000046857.76gold quality

Single-cell (SCXA)

Detected in 3 experiment(s), a significant marker in 3.

ExperimentMarker?Max mean expression
E-GEOD-130473yes343.20
E-MTAB-6819yes156.38
E-ANND-3yes6.53

HPA expression

RNA tissue specificity: Tissue enhanced

showing 60 of 73 HPA tissues / cells by nTPM:

Tissue / cellAxisnTPMProtein (IHC)
Livertissue113.8high
Small intestinetissue37.9medium
Duodenumtissue36.8medium
Gallbladdertissue23.0medium
Kidneytissue17.3high
Retinatissue3.6
Breasttissue2.9not detected
Cerebellumtissue1.7not detected
Skin 1tissue1.6not detected
Olfactory bulbtissue1.5
Amygdalatissue1.4
Corpus callosumtissue1.4
Cerebral cortextissue1.3not detected
Retrosplenial cortextissue1.3
Insular cortextissue1.3
Basal gangliatissue1.2not detected
Retrosplenial and cingulate cortextissue1.2
Temporal cortextissue1.2
Prefrontal cortextissue1.1
Hippocampal formationtissue1.1
Entorhinal cortextissue1.1
Ventral forebraintissue1.1
Occipital cortextissue1.1
Motor cortextissue1.0
Putamentissue1.0
Periaqueductal graytissue1.0
Septumtissue1.0
Somatosensory cortextissue1.0
Medulla oblongatatissue0.9
Substantia nigratissue0.9
Midbraintissue0.8
Hypothalamustissue0.8
Spinal cordtissue0.8
Thymustissue0.8
Bone marrowtissue0.8not detected
Lymph nodetissue0.7not detected
Ponstissue0.7
Tonguetissue0.7
Thalamustissue0.7
Superior colliculitissue0.7
Appendixtissue0.7not detected
Skeletal muscletissue0.6not detected
Nucleus accumbenstissue0.6
Testistissue0.5not detected
Adipose tissuetissue0.5not detected
Vaginatissue0.4not detected
Rectumtissue0.4not detected
Urinary bladdertissue0.4not detected
Pancreastissue0.4not detected
Placentatissue0.4not detected
Spleentissue0.4not detected
Locus coeruleustissue0.4
Hippocampustissue0.4not detected
Tonsiltissue0.4not detected
Salivary glandtissue0.3medium
Colontissue0.3not detected
Fallopian tubetissue0.3not detected
Stomach 1tissue0.2
Seminal vesicletissue0.2not detected
Smooth muscletissue0.2not detected

Brain sub-regions (HPA Brain Atlas): detected in 189; highest nTPM — White matter (1.4), Parieto-temporal junction (white matter) (1.1), Subiculum (1.1), Ventral hippocampus (1.1), Dorsal hippocampus (1.0).

Regulation

Is transcription factor: yes

Downstream targets (CollecTRI)

1 targets:

TargetRegulation
ABCB1Repression

Upstream regulators (CollecTRI, top): AHR, CEBPB, CEBPG, ESR1, FOXA2, FOXM1, FOXO1, GATA3, HNF1A, HNF1B, HNF4A, IRF3, NFE2L2, NR1H3, NR1H4, NR1I2, NR1I3, NR3C1, ONECUT1, RARA, RXRA, SP1, TP53, YBX1

miRNA regulators (miRDB)

Targeting ABCC2 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific).

showing 30 of 57 miRNAs:

miRNAMax scoreAvg scoremiRNA target_count
HSA-MIR-3163100.0077.238605
HSA-MIR-5692B100.0071.322622
HSA-MIR-5692C100.0071.322622
HSA-MIR-485-3P99.9870.681585
HSA-MIR-539-3P99.9870.741616
HSA-MIR-4789-5P99.9870.762721
HSA-MIR-548AN99.9770.912817
HSA-MIR-548D-3P99.8770.674362
HSA-MIR-548BB-3P99.8670.584354
HSA-MIR-394199.8670.542735
HSA-MIR-548AR-3P99.8571.263889
HSA-MIR-4728-5P99.8569.394718
HSA-MIR-548AC99.8470.774351
HSA-MIR-548H-3P99.8470.804349
HSA-MIR-548Z99.8470.804349
HSA-MIR-548AZ-3P99.8270.563549
HSA-MIR-548BC99.8270.613524
HSA-MIR-548E-3P99.8270.593514
HSA-MIR-548F-3P99.8270.593540
HSA-MIR-6785-5P99.8268.684428
HSA-MIR-548A-3P99.7670.583524
HSA-MIR-149-3P99.7268.223963
HSA-MIR-6883-5P99.6968.053785
HSA-MIR-451999.4866.10859
HSA-MIR-29799.4069.581418
HSA-MIR-4999-5P99.3569.15926
HSA-MIR-155-5P99.3570.161509
HSA-MIR-429299.1665.571767
HSA-MIR-6791-5P99.1665.921844
HSA-MIR-376A-3P99.0669.171128

Functional genomics

gnomAD constraint: pLI 1.55e-45, LOEUF 0.985, missense Z 1.04 — population loss-of-function intolerance (pLI ≥ 0.9 = LoF-intolerant; lower LOEUF = more constrained). gnomAD

Regional missense constraint (gnomAD RMC): no regional variation along ENST00000647814 — one region, missense o/e 0.98.

Literature-anchored findings (GeneRIF, showing 40)

  • Two novel mutations in the multidrug resistance protein 2 gene in Israeli patients with Dubin-Johnson syndrome. (PMID:11477083)
  • No change in cMOAT mRNA expression was detected in non-HTLV-1 Tax producing ATL cell lines following transfection with HTLV-1 Tax. (PMID:11937269)
  • structural requirements for apical sorting (PMID:11952788)
  • Impaired protein maturation followed by proteasomal degradation of inactive MRP2I1173F explain the deficient hepatobiliary elimination observed in this group of Dubin-Johnson syndrome patients. (PMID:12388192)
  • mutation in MRP2 causes deficient maturation and impaired sorting in cells in Dubin-Johnson syndrome (PMID:12395335)
  • RNA expression of this protein in breast cancer correlates with response to chemotherapy. (PMID:12576456)
  • The role of multidrug resistance proteins MRP1, MRP2 and MRP3 in cellular folate homeostasis. (PMID:12628490)
  • study of the interactions of drugs, organic anions, and bile acids with MRP2 substrates shows MRP2 contains two similar but nonidentical ligand binding sites: a substrate transport site and a site that regulates the affinity of the transport site (PMID:12702717)
  • MRP2 active transport of estradiol-17-beta-d-glucuronide and MRP2 ATPase characteristics in isolated, inside-out membrane vesicles (PMID:12704183)
  • MRP1 and MRP2 were expressed in peripheral blood cells, with more than sevenfold higher MRP1 expression. The MRP2 mRNA expression was highest in CD4+ cells, followed by CD8+ > CD56+ > CD19+ cells. (PMID:12890151)
  • Homozygous mutation Arg768Trp in the ABC-transporter encoding gene multidrug-resistance-associated-protein 2 causes Dubin-Johnson syndrome (PMID:12942343)
  • Disrupted localization of radixin and MRP2 supports the concept that radixin contributes to the canalicular localization of MRP2. (PMID:14568249)
  • Cholestasis promotes down-regulation of MRP2 expression in the duodenum of humans. (PMID:15057744)
  • ABCC2 promoter polymorphism is not a determinant of the risk of spinal dysraphism. (PMID:15211708)
  • “MRP2(multidrug resistance-associated protein 2) is associated with active drug efflux and may influence oral bioavailability of common classes of drugs. (PMID:15848949)
  • Dysfunction or loss of the multidrug resistance protein 2 (MRP2) is the molecular basis of Dubin-Johnson syndrome (DJS). (PMID:15870973)
  • The major canalicular transporter genes are expressed at mid-gestational stage during human fetal development. (PMID:15922475)
  • ABCB1, ABCC1, ABCC2, and ABCG2 haplotypes influence response to nelfinavir (PMID:16041239)
  • nuclear factor, erythroid derived 2, like 2 appears to regulate Mrp2 gene expression via an antioxidant-response element element located at the proximal region of its promoter in response to exposure to xenobiotics (PMID:16426233)
  • enhanced expression of MRP2 and lower expression of AQP3 are responsible for lower arsenic accumulation in arsenic-resistant cells (PMID:16672223)
  • ABCC2 genotype modulates the expression in the unaffected renal cortex of renal cell cancer patients (PMID:16788565)
  • The mRNA induction of MDR1, MRP1, MRP2 and MRP3 by rifampicin (Rif), dexamethasone (Dex) and omeprazole (Ome) was investigated in primary cultures of cryopreserved human and rat hepatocytes. (PMID:16946557)
  • The ABCC2 c.1446C>G SNP is associated with reduced systemic exposure to pravastatin as a consequence of increased MRP2 expression. (PMID:17047488)
  • the C-24T SNP of MRP2 is associated with a lower oral clearance of mycophenolic acid in steady-state conditions (PMID:17060857)
  • ABCC2 polymorphism contributes to variability of methotrexate kinetics. (PMID:17112803)
  • The expression of ABCC2 in nuclear membranes in human tissues is specific for poorly differentiated cells including stem cells. (PMID:17145840)
  • Human corneal epithelium expresses the multidrug resistance associated protein ABCC2. ABCC2 contributes to drug efflux from the eye. (PMID:17156953)
  • Allelic variants of UGT2B7, CYP2C8, and ABCC2, which may predispose to the formation and accumulation of reactive diclofenac metabolites are associated with diclofenac hepatotoxicity (PMID:17241877)
  • I1173F causing DJS in Iranian Jews occurred after the separation of Iranian Jews from Moroccan Jews 2000-2600 years ago, while A244V causing FVII deficiency in Iranian and Moroccan Jews occurred prior to the divergence of these two populations. (PMID:17287630)
  • Rotor-type hyperbilirubinaemia is not an allelic variant of ABCC2 deficiency. (PMID:17403188)
  • Results show that the molecular model of ABCC2 agreed well with experimentally determined ABCC2-ligand interactions and the interaction of ABCC2 with quercetin glucuronides is dependent on the position and nature of substitution. (PMID:17478601)
  • Mrp2 and Mrp3 provide alternative routes for the excretion of a glucuronidated substrate from the liver in vivo. (PMID:17485564)
  • MRP1-Pro(1150), MRP2-Pro(1158), and MRP3-Pro(1147) in the cytoplasmic loop 7 differ in their influence on substrate specificity but share a common role in the nucleotide interactions at nucleotide binding domain 2 of these transporters. (PMID:17494643)
  • 12 polymorphisms and mutations were found in the MRP2 gene in a Korean population. (PMID:17502832)
  • Inhibition of renal uptake (via OAT3) and efflux processes (via MRP2 and MRP4) explains the possible sites of drug-drug interaction for methotrexate with probenecid and some NSAIDs, including their glucuronides. (PMID:17578901)
  • neither MRP1 nor MRP2 appears to have a role in response to cisplatin-based chemotherapy in resected non-small cell lung cancer (PMID:17606722)
  • Report disturbed colocalization of multidrug resistance protein 2 and radixin in human cholestatic liver diseases. (PMID:17725603)
  • Radixin and ezrin play similar roles in the apical membrane localization of ABCC2 (MRP2) and their expression level and subcellular distribution are important factors in the regulation of ABCC2 (MRP2) at the post-transcriptional level. (PMID:17825285)
  • This study showed that manipulation of drug efflux transporters may be a useful strategy for increasing the intracellular concentration and thereby enhancing the clinical efficacy of lopinavir. (PMID:17890284)
  • we observed that haplotype frequency of the ABCC2 gene in intrahepatic cholestasis of pregnancy patients significantly differed from controls (PMID:17997497)

Cross-species orthologs

15 orthologs

OrganismSymbolGene ID
mus_musculusAbcc2ENSMUSG00000025194
rattus_norvegicusAbcc2ENSRNOG00000046727
drosophila_melanogasterl(2)03659FBGN0010549
drosophila_melanogasterCG7627FBGN0032026
drosophila_melanogasterMRPFBGN0032456
drosophila_melanogasterCG9270FBGN0032908
drosophila_melanogasterCG10505FBGN0034612
drosophila_melanogasterMrp5FBGN0038740
drosophila_melanogasterrdogFBGN0039644
drosophila_melanogasterCG11898FBGN0039645
drosophila_melanogasterCG31792FBGN0051792
drosophila_melanogasterCG31793FBGN0051793
drosophila_melanogasterMrp4FBGN0263316
caenorhabditis_elegansWBGENE00000477
caenorhabditis_elegansWBGENE00003413

Paralogs (11): CFTR (ENSG00000001626), ABCC8 (ENSG00000006071), ABCC9 (ENSG00000069431), ABCC6 (ENSG00000091262), ABCC1 (ENSG00000103222), ABCC3 (ENSG00000108846), ABCC5 (ENSG00000114770), ABCC11 (ENSG00000121270), ABCC10 (ENSG00000124574), ABCC4 (ENSG00000125257), ABCC12 (ENSG00000140798)

Mouse-model phenotypes

Observed phenotypes of the mouse ortholog (MGI:1352447) from MGI (Alliance of Genome Resources) — knockout/mutant phenotypes, ranked by annotation count. 22 distinct phenotype terms.

Mouse phenotype (MP)Records
increased circulating bilirubin level5
abnormal liver physiology2
abnormal bile secretion2
increased circulating cholesterol level2
bilirubinuria2
increased neutrophil cell number1
increased circulating HDL cholesterol level1
abnormal kidney physiology1
decreased mean corpuscular volume1
decreased hemoglobin content1
increased circulating alanine transaminase level1
decreased circulating alkaline phosphatase level1
increased liver weight1
increased kidney weight1
abnormal bile composition1
decreased lymphocyte cell number1
increased circulating aspartate transaminase level1
decreased mean corpuscular hemoglobin1
increased physiological sensitivity to xenobiotic1
abnormal xenobiotic pharmacokinetics1
decreased mean platelet volume1
abnormal blood homeostasis1

Additional cross-species homologs

Sequence homologs in species beyond Ensembl Compara’s model organisms, by Diamond local protein alignment (% sequence identity; best hit per species). Lower-identity rows are more distant homologs. The matched accessions’ gene symbols aren’t in biobtree yet, so each row shows the UniProt accession.

OrganismUniProtIdentityMethod
Oryza sativa Indica GroupA2XCD4100.0%Diamond
Saccharomyces cerevisiae S288CP0CE69100.0%Diamond
Oryza sativa Japonica GroupQ10RX7100.0%Diamond
Oryctolagus cuniculusP8245198.1%Diamond
Cricetus cricetusQ0942798.0%Diamond
Macaca fascicularisQ864R997.6%Diamond
Arabidopsis thalianaQ7FB5694.8%Diamond
Canis lupus familiarisQ6UR0593.1%Diamond
Bos taurusQ8HXQ593.1%Diamond
Zea maysA7KVC290.5%Diamond
Dictyostelium discoideumQ8ST8786.2%Diamond
Gallus gallusQ5F36479.0%Diamond
Schizosaccharomyces pombe 972h-Q1018563.4%Diamond
Nakaseomyces glabratus CBS 138Q6FWS555.3%Diamond
Pyricularia oryzae 70-15G4N2B547.9%Diamond
Cryptococcus neoformans H99J9VQH142.5%Diamond
Mycosarcoma maydisA0A0D1CZ6341.8%Diamond
Talaromyces islandicusA0A0U1LQE141.3%Diamond
Aspergillus versicolorP9WEL841.0%Diamond
Candida albicans SC5314Q5A76241.0%Diamond
Aspergillus nidulans FGSC A4A0A1U8QTJ940.6%Diamond
Leishmania tarentolaeP2144140.3%Diamond
Escherichia coliQ9X2W036.1%Diamond

Genomic neighbors (locus context)

Genes flanking this one on the chromosome (NCBI/Entrez gene neighborhood). Positional context only — some neighbors share regulatory elements (bidirectional promoters, antisense/overlapping transcripts), but chromosomal adjacency is not itself a functional relationship (see Interactions for that).

SymbolTypeEntrez
DNMBPprotein-coding23268
CUTCprotein-coding51076
SLC25A28-DTncRNA123466211
COX15protein-coding1355
ENTPD7protein-coding57089
SLC25A28protein-coding81894
DNMBP-AS1ncRNA100188954
CPN1protein-coding1369

Protein

Protein identifiers

ATP-binding cassette sub-family C member 2 — Q92887 (reviewed: Q92887)

Alternative names: Canalicular multidrug resistance protein, Canalicular multispecific organic anion transporter 1, Multidrug resistance-associated protein 2

All UniProt accessions (5): A0A3B3IRU4, A0A3B3IRZ2, A0A3B3IS94, A0A3B3ITG8, Q92887

UniProt curated annotations — full annotation on UniProt →

Function. ATP-dependent transporter of the ATP-binding cassette (ABC) family that hydrolyzes ATP to enable active transport of endogenous and xenobiotic substrates conjugated with glucuronate, glutathione or sulfate. Operates at apical membranes of polarized cells such as hepatocytes, renal and intestinal epithelial cells, where it mediates hepatobiliary and renal excretion of conjugated substrates preventing them from being recycled back into the bloodstream. Involved in canalicular bile production. Mediates hepatobiliary excretion of mono- and bis-glucuronidated bilirubin, enabling bilirubin detoxification. Mediates the efflux of steroid glucuronates and may regulate their hepatobiliary and renal metabolic clearance. Displays low affinity but high transport velocity toward androgen conjugates such as testosterone and dihydrotestosterone glucuronates as well as toward estrogen conjugates including estradiol, estrone and estriol glucuronates. May control the hepatobiliary and renal efflux of inflammatory leukotriene C4 (LTC4) and related cysteinyl leukotrienes. Transports sulfated bile salt such as taurolithocholate sulfate. It is functionally inactive toward androgen sulfates. Transports various anticancer drugs, such as anthracycline, vinca alkaloid and methotrexate and HIV-drugs such as protease inhibitors. Can confer resistance to several anticancer drugs including cisplatin, doxorubicin, epirubicin, methotrexate, etoposide and vincristine, by decreasing accumulation of these drugs in cells.

Subcellular location. Apical cell membrane.

Tissue specificity. Expressed by polarized cells in liver, kidney and intestine. The highest expression is found in liver. Expressed in small intestine.

Disease relevance. Dubin-Johnson syndrome (DJS) [MIM:237500] Autosomal recessive disorder characterized by conjugated hyperbilirubinemia, an increase in the urinary excretion of coproporphyrin isomer I, deposition of melanin-like pigment in hepatocytes, and prolonged retention of sulfobromophthalein, but otherwise normal liver function. The disease is caused by variants affecting the gene represented in this entry.

Similarity. Belongs to the ABC transporter superfamily. ABCC family. Conjugate transporter (TC 3.A.1.208) subfamily.

RefSeq proteins (1): NP_000383* (*=MANE)

Domains & families (InterPro)

IDNameType
IPR003439ABC_transporter-like_ATP-bdDomain
IPR003593AAA+_ATPaseDomain
IPR005292MRPFamily
IPR011527ABC1_TM_domDomain
IPR017871ABC_transporter-like_CSConserved_site
IPR027417P-loop_NTPaseHomologous_superfamily
IPR036640ABC1_TM_sfHomologous_superfamily
IPR050173ABC_transporter_C-likeFamily
IPR056227TMD0_ABCDomain

Pfam: PF00005, PF00664, PF24357

Enzyme classification (BRENDA)

  • EC 7.6.2.2 — ABC-type xenobiotic transporter (BRENDA: 49 organisms, 716 substrates, 471 inhibitors, 280 Km, 31 kcat entries)
  • EC 7.6.2.3 — ABC-type glutathione-S-conjugate transporter (BRENDA: 8 organisms, 145 substrates, 63 inhibitors, 16 Km, 0 kcat entries)

Substrate kinetics (BRENDA)

75 substrates with measured Km, best-characterized 15. Km ranges are aggregated across organisms/conditions.

SubstrateKm (mM)Measurements
ATP0.0009–9105
VERAPAMIL/IN0.0006–0.005811
VINBLASTINE/IN0.0002–0.145511
ESTRADIOL 17-BETA-D-GLUCURONIDE/IN0.013–0.177
LEUKOTRIENE C4/IN—7
METHOTREXATE/IN0.24–0.7766
NICARDIPINE/IN0.0004–0.00266
PROGESTERONE/IN0.0038–0.02076
CYCLIC GUANOSINE MONOPHOSPHATE/IN0.36–25
VERAPAMIL0.0022–0.01155
ATP0.0865–0.915
COLCHICINE/IN0.037–0.724
FOLIC ACID/IN0.13–0.264
PACLITAXEL/IN0.0007–0.00094
RHODAMINE 123/IN0.0118–0.03544

Catalyzed reactions (Rhea)

  • an S-substituted glutathione(in) + ATP + H2O = an S-substituted glutathione(out) + ADP + phosphate + H(+) (RHEA:19121)
  • leukotriene C4(in) + ATP + H2O = leukotriene C4(out) + ADP + phosphate + H(+) (RHEA:38963)
  • taurolithocholate 3-sulfate(in) + ATP + H2O = taurolithocholate 3-sulfate(out) + ADP + phosphate + H(+) (RHEA:50084)
  • 17beta-estradiol 17-O-(beta-D-glucuronate)(in) + ATP + H2O = 17beta-estradiol 17-O-(beta-D-glucuronate)(out) + ADP + phosphate + H(+) (RHEA:60128)
  • (4Z,15Z)-bilirubin IXalpha C8-beta-D-glucuronoside(in) + ATP + H2O = (4Z,15Z)-bilirubin IXalpha C8-beta-D-glucuronoside(out) + ADP + phosphate + H(+) (RHEA:66180)
  • (4Z,15Z)-bilirubin IXalpha C8,C12-beta-D-bisglucuronoside(in) + ATP + H2O = (4Z,15Z)-bilirubin IXalpha C8,C12-beta-D-bisglucuronoside(out) + ADP + phosphate + H(+) (RHEA:66192)
  • (4Z,15Z)-bilirubin IXalpha C12-beta-D-glucuronoside(in) + ATP + H2O = (4Z,15Z)-bilirubin IXalpha C12-beta-D-glucuronoside(out) + ADP + phosphate + H(+) (RHEA:79155)
  • 3beta-androst-5-en-17-one 3-O-(beta-D-glucuronate)(in) + ATP + H2O = 3beta-androst-5-en-17-one 3-O-(beta-D-glucuronate)(out) + ADP + phosphate + H(+) (RHEA:86835)
  • epitestosterone 17-O-(beta-D-glucuronate)(in) + ATP + H2O = epitestosterone 17-O-(beta-D-glucuronate)(out) + ADP + phosphate + H(+) (RHEA:86839)
  • 3alpha-hydroxyetiocholan-17-one 3-O-(beta-D-glucuronate)(in) + ATP + H2O = 3alpha-hydroxyetiocholan-17-one 3-O-(beta-D-glucuronate)(out) + ADP + phosphate + H(+) (RHEA:86843)
  • testosterone 17-O-(beta-D-glucuronate)(in) + ATP + H2O = testosterone 17-O-(beta-D-glucuronate)(out) + ADP + phosphate + H(+) (RHEA:86847)
  • estrone 3-O-(beta-D-glucuronate)(in) + ATP + H2O = estrone 3-O-(beta-D-glucuronate)(out) + ADP + phosphate + H(+) (RHEA:86851)

UniProt features (206 total): helix 77, strand 32, sequence variant 29, topological domain 18, transmembrane region 17, turn 11, modified residue 7, domain 4, glycosylation site 3, mutagenesis site 3, binding site 2, chain 1, region of interest 1, sequence conflict 1

Structure

Experimental structures (PDB)

16 structures by resolution:

PDBTitleMethodResolution (Å)
9C12Leukotriene C4-bound Multidrug Resistance-associated Protein 2 (MRP2)ELECTRON MICROSCOPY2.75
8IZQMultidrug resistance-associated protein 3ELECTRON MICROSCOPY3.31
8JXQCryo-EM structure of bilirubin ditaurate (BDT) bound human ABC transporter ABCC2ELECTRON MICROSCOPY3.32
9BUKOutward-facing, ATP-bound Multidrug Resistance-associated Protein 2 (MRP2) (E1462Q)ELECTRON MICROSCOPY3.4
9BR2Inward-facing, ATP-bound Multidrug Resistance-associated Protein 2 (MRP2) (E1462Q)ELECTRON MICROSCOPY3.41
9JN2Multidrug resistance-associated protein 2 in complex with AMP-PNP in active stateELECTRON MICROSCOPY3.44
9JCSMultidrug resistance-associated protein 2 in complex with MK-571ELECTRON MICROSCOPY3.47
9JC0Multidrug resistance-associated protein 2 in complex with MK-571 and ATPELECTRON MICROSCOPY3.52
8JXUCryo-EM structure of human ABC transporter ABCC2 under active turnover conditionELECTRON MICROSCOPY3.55
9JB7Multidrug resistance-associated protein 2 in complex with SN-38GELECTRON MICROSCOPY3.55
9JN1apo Multidrug resistance-associated protein 2 in complex with AMP-PNP in rest stateELECTRON MICROSCOPY3.56
8JY4Cryo-EM structure of human ABC transporter ABCC2 in apo’ stateELECTRON MICROSCOPY3.58
8JX7Cryo-EM structure of human ABC transporter ABCC2ELECTRON MICROSCOPY3.6
8IZRMultidrug resistance-associated protein 2ELECTRON MICROSCOPY3.62
9C2IInward-facing, ligand-free Multidrug Resistance-associated protein 2 (MRP2)ELECTRON MICROSCOPY3.62
8JY5Cryo-EM structure of human ABC transporter ABCC2 in apo” stateELECTRON MICROSCOPY4.17

Predicted structure (AlphaFold)

ModelpLDDTFraction very-high
AF-Q92887-F181.400.38

Human Protein Atlas

Protein class: Enzymes, ENZYME proteins, Metabolic proteins, Transporters, Primary Active Transporters, Predicted membrane proteins, Plasma proteins, Cancer-related genes, Candidate cancer biomarkers, Disease related genes, FDA approved drug targets, Small molecule drugs, Human disease related genes, Congenital disorders of metabolism, Congenital disorders of cofactor/vitamin metabolism

Protein evidence: Evidence at protein level

Antibody reliability (HPA): IH enhanced

Functional residue map

Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.

Ligand- & substrate-binding residues (2)

PositionRole
671–678ATP
1334–1341ATP

Post-translational modifications (7)

TypePositions
Phosphoserine281, 283, 878, 926, 930, 938, 1438

Glycosylation sites (3)

TypePositions
N-linked (glcnac…) asparagine7, 12, 1011

Mutagenesis-validated functional residues (3)

PositionPhenotype
1254fails to transport methotrexate, leukotriene c4 and estradiol glucuronide.
1254fails to transport methotrexate and leukotriene c4. does not affect estradiol glucuronide transport.
1254fails to transport methotrexate; reduces leukotriene c4 transport. does not affect estradiol glucuronide transport.

Function

Pathways and Gene Ontology

Reactome pathways

6 curated (TAS) of 13; 4 disease pathways. Curated-first; evidence = TAS (manually curated) vs IEA (electronic inference).

13 pathways:

IDPathwayEvidence
R-HSA-5679001Defective ABCC2 causes DJS ⚕curated
R-HSA-382556ABC-family protein mediated transportcurated
R-HSA-9749641Aspirin ADMEcurated
R-HSA-9754706Atorvastatin ADMEcurated
R-HSA-189483Heme degradationcurated
R-HSA-9753281Paracetamol ADMEcurated
R-HSA-5619084ABC transporter disorders ⚕—
R-HSA-1643685Disease ⚕—
R-HSA-5619115Disorders of transmembrane transporters ⚕—
R-HSA-9748784Drug ADME—
R-HSA-1430728Metabolism—
R-HSA-189445Metabolism of porphyrins—
R-HSA-382551Transport of small molecules—

MSigDB gene sets: 273 (showing top): GOBP_RESPONSE_TO_NITROGEN_COMPOUND, GOBP_EPITHELIUM_DEVELOPMENT, GOBP_MUSCLE_TISSUE_DEVELOPMENT, YAGI_AML_WITH_INV_16_TRANSLOCATION, GOBP_CIRCULATORY_SYSTEM_PROCESS, GOBP_RESPONSE_TO_PEPTIDE, GOBP_TRANSITION_METAL_ION_TRANSPORT, GOBP_MODIFIED_AMINO_ACID_TRANSPORT, REACTOME_METABOLISM_OF_PORPHYRINS, MODULE_418, GOBP_STRIATED_MUSCLE_CELL_DIFFERENTIATION, ACEVEDO_NORMAL_TISSUE_ADJACENT_TO_LIVER_TUMOR_DN, GOCC_CELL_SURFACE, SAENZ_DETOX_PATHWAY_AND_CARCINOGENESIS_DN, GOBP_XENOBIOTIC_TRANSMEMBRANE_TRANSPORT

GO Biological Process (14): xenobiotic metabolic process (GO:0006805), xenobiotic transmembrane transport (GO:0006855), negative regulation of gene expression (GO:0010629), bile acid and bile salt transport (GO:0015721), bilirubin transport (GO:0015723), heme catabolic process (GO:0042167), xenobiotic export from cell (GO:0046618), transmembrane transport (GO:0055085), transepithelial transport (GO:0070633), leukotriene transport (GO:0071716), transport across blood-brain barrier (GO:0150104), xenobiotic transport across blood-brain barrier (GO:1990962), lipid transport (GO:0006869), carboxylic acid transport (GO:0046942)

GO Molecular Function (12): ATP binding (GO:0005524), ABC-type xenobiotic transporter activity (GO:0008559), bilirubin transmembrane transporter activity (GO:0015127), ABC-type glutathione S-conjugate transporter activity (GO:0015431), ATP hydrolysis activity (GO:0016887), toxin transmembrane transporter activity (GO:0019534), transmembrane transporter activity (GO:0022857), ATPase-coupled transmembrane transporter activity (GO:0042626), xenobiotic transmembrane transporter activity (GO:0042910), ABC-type transporter activity (GO:0140359), nucleotide binding (GO:0000166), protein binding (GO:0005515)

GO Cellular Component (6): plasma membrane (GO:0005886), cell surface (GO:0009986), apical plasma membrane (GO:0016324), vesicle (GO:0031982), intercellular canaliculus (GO:0046581), membrane (GO:0016020)

Reactome top-level categories

7 top-level categories:

CategoryPathways
Drug ADME3
Metabolism of porphyrins1
Transport of small molecules1
ABC transporter disorders1
Metabolism1
Disorders of transmembrane transporters1
Disease1

GO top-level categories

48 GO namespaces:

CategoryTerms
xenobiotic transport4
transmembrane transport3
transport3
ABC-type transporter activity2
ATP-dependent activity2
transmembrane transporter activity2
cellular anatomical structure2
metabolic process1
cellular response to xenobiotic stimulus1
gene expression1
regulation of gene expression1
negative regulation of macromolecule biosynthetic process1
lipid transport1
monocarboxylic acid transport1
organic hydroxy compound transport1
dicarboxylic acid transport1
nitrogen compound transport1
porphyrin-containing compound catabolic process1
heme metabolic process1
pigment catabolic process1
export from cell1
cellular process1
icosanoid transport1
vascular transport1
transport across blood-brain barrier1
lipid localization1
organic acid transport1
adenyl ribonucleotide binding1
purine ribonucleoside triphosphate binding1
anion binding1
xenobiotic transmembrane transporter activity1
dicarboxylic acid transmembrane transporter activity1
bilirubin transport1
sulfur compound transmembrane transporter activity1
ribonucleoside triphosphate phosphatase activity1
transporter activity1
primary active transmembrane transporter activity1
ATP hydrolysis activity1
ATPase-coupled transmembrane transporter activity1
nucleoside phosphate binding1
heterocyclic compound binding1
binding1
membrane1
cell periphery1
apical part of cell1
plasma membrane region1
membrane-bounded organelle1
cell-cell junction1

Experimentally-supported GO annotations

GO terms backed by direct experimental evidence (ECO experimental codes) — 13 of 32 annotations. The rest are phylogenetic / computational / electronic (IEA).

13 experimentally-supported GO terms:

GO termNSEvidence
bile acid and bile salt transportBPmutant phenotype
bilirubin transportBPmutant phenotype
heme catabolic processBPmutant phenotype
leukotriene transportBPmutant phenotype
xenobiotic export from cellBPmutant phenotype
xenobiotic transmembrane transportBPmutant phenotype
apical plasma membraneCCdirect assay
cell surfaceCCdirect assay
ABC-type glutathione S-conjugate transporter activityMFmutant phenotype
ABC-type xenobiotic transporter activityMFmutant phenotype
ATPase-coupled transmembrane transporter activityMFdirect assay
bilirubin transmembrane transporter activityMFmutant phenotype
xenobiotic transmembrane transporter activityMFdirect assay

Protein interactions and networks

STRING

showing 15 of 1,636 interactions by confidence (×1000):

Protein AProtein BPartner UniProtScore
ABCC2SLC22A8Q8TCC7896
ABCC2ABCG2Q9UNQ0888
ABCC2SLCO1B1Q9Y6L6798
ABCC2SLCO1B3Q9NPD5768
ABCC2SLC10A1Q14973752
ABCC2SLCO1A2P46721719
ABCC2CYP3A4P05184719
ABCC2UGT1A6P19224716
ABCC2UGT1A1P22309716
ABCC2SLCO2B1O94956715
ABCC2UGT1A7Q9HAW7715
ABCC2UGT1A8Q9HAW9715
ABCC2NR1I2O75469705
ABCC2UGT1A4P22310702
ABCC2UGT1A10Q9HAW8701

IntAct

Human interaction partners of ABCC2 in IntAct, one row per partner (best MIscore; records = supporting IntAct interaction records).

6 partners by confidence:

PartnerInteraction typeMIscoreRecords
NFKB1physical association0.5103
HNRNPDLphysical association0.4001
AZIN1physical association0.3701
MCPH1physical association0.3701
SHANK3physical association0.3701
UBQLN1physical association0.3701

BioGRID (96 interactions; top human partners by supporting records): PDZK1 (Two-hybrid; 3 records), SLC9A3R1 (Reconstituted Complex; 3 records), NFKB1 (Affinity Capture-Western; 2 records), ABCA3 (Co-fractionation), ABCC4 (Co-fractionation), AP2M1 (Affinity Capture-Western), ATP11C (Co-fractionation), ATP6V1B1 (Co-fractionation), ATP6V1E1 (Co-fractionation), AZIN1 (Two-hybrid), B4GAT1 (Affinity Capture-MS), CACNG2 (Affinity Capture-MS), CHCHD2 (Co-fractionation), CLTC (Affinity Capture-Western), CYP26B1 (Affinity Capture-MS)

SIGNOR signaling

1 signaling interactions:

AEffectBMechanism
IRF3“up-regulates quantity by expression”ABCC2“transcriptional regulation”

Disease & clinical

Genetic variants

Variant evidence for ABCC2: 1,337 ClinVar records (190 pathogenic / likely pathogenic); 51 PharmGKB clinical annotations; 7 GWAS associations. Per-variant detail is on Sugi Variant.

ClinVar

1,337 variants total. Per-class counts are floors (≥ shown; pagination cap):

ClassificationCount (floor)
Pathogenic132
Likely pathogenic58
Uncertain significance370
Likely benign549
Benign75

Top pathogenic / likely-pathogenic (15)

Showing the 15 best-reviewed of 190 pathogenic / likely-pathogenic ClinVar records, ranked by ClinVar review status (expert panel → multiple submitters → single submitter), then by number of submitting labs.

Variant IDHGVSClassificationReviewSubmitters
8418NM_000392.5(ABCC2):c.3517A>T (p.Ile1173Phe)Pathogeniccriteria provided, multiple submitters, no conflicts6
290862NM_000392.5(ABCC2):c.3399_3400del (p.Tyr1134fs)Pathogeniccriteria provided, multiple submitters, no conflicts5
595904NM_000392.5(ABCC2):c.3216dup (p.Asp1073Ter)Pathogeniccriteria provided, multiple submitters, no conflicts5
818031NM_000392.5(ABCC2):c.4239_4240dup (p.His1414fs)Pathogeniccriteria provided, multiple submitters, no conflicts4
195649NM_000392.5(ABCC2):c.2901C>A (p.Tyr967Ter)Pathogeniccriteria provided, multiple submitters, no conflicts3
593171NM_000392.5(ABCC2):c.2260del (p.Ile754fs)Pathogeniccriteria provided, multiple submitters, no conflicts3
593738NM_000392.5(ABCC2):c.3538C>T (p.Gln1180Ter)Pathogeniccriteria provided, multiple submitters, no conflicts3
593794NM_000392.5(ABCC2):c.2325del (p.Tyr776fs)Pathogeniccriteria provided, multiple submitters, no conflicts3
598367NM_000392.5(ABCC2):c.2443C>T (p.Arg815Ter)Pathogeniccriteria provided, multiple submitters, no conflicts3
2735469NM_000392.5(ABCC2):c.3825C>G (p.Tyr1275Ter)Pathogeniccriteria provided, multiple submitters, no conflicts3
2735470NM_000392.5(ABCC2):c.3928C>T (p.Arg1310Ter)Pathogeniccriteria provided, multiple submitters, no conflicts3
498026NM_000392.5(ABCC2):c.3220_3226del (p.Thr1074fs)Pathogeniccriteria provided, multiple submitters, no conflicts2
498804NM_000392.5(ABCC2):c.3599G>A (p.Trp1200Ter)Pathogeniccriteria provided, multiple submitters, no conflicts2
498805NM_000392.5(ABCC2):c.3500dup (p.Ser1168fs)Pathogeniccriteria provided, multiple submitters, no conflicts2
501700NM_000392.5(ABCC2):c.476del (p.Asn159fs)Pathogeniccriteria provided, multiple submitters, no conflicts2

Per-variant reference — Sugi Variant

Explore ABCC2’s pathogenic and likely-pathogenic variants individually — each with its ClinVar classification and conditions, applied ACMG criteria (ClinGen expert panel, where curated), the calibrated in-silico predictors (AlphaMissense, REVEL, SaProt, conservation), gnomAD frequency, and the predictor-disagreement QC signal — on Sugi Variant.

SpliceAI

Top 10 splice-impact sites by Δscore (adjacent positions with the same effect merged into one range; 35 predictions of 2,644):

Position(s)EffectΔscoreSites
10:99792360–99792361donor_loss1.00005
10:99805448–99805449donor_loss1.00005
10:99817198donor_gain1.0000
10:99817208donor_gain1.0000
10:99830305–99830306acceptor_loss1.00006
10:99830434donor_loss1.00003
10:99843797–99843798acceptor_loss1.00003
10:99843901–99843902donor_loss1.00005
10:99844316acceptor_gain1.0000
10:99844320–99844321acceptor_loss1.00005

AlphaMissense

3,076 missense substitutions predicted likely pathogenic (of 10,172 scored), across 909 residues. Top 20 hotspot residues, ranked by the number of likely-pathogenic substitutions (of those reachable by a single-nucleotide change), then by mean score:

ResidueLikely-pathogenic substitutionsMean am_pathogenicityMax am_pathogenicity
D79280.9910.997
D78580.9800.993
D146180.9800.993
H149380.9800.994
D42780.9770.989
D74280.9740.987
S76280.9700.999
D109280.9700.991
D146880.9650.989
D78680.9560.989
D108780.9520.988
F58080.9510.993
D49680.9500.990
F134880.9340.984
F56280.9280.980
F138780.9220.984
F58680.9200.981
F72180.9140.977
D136180.9100.981
S143880.9100.994

HPA cancer prognostics

RNA cancer specificity: Cancer enhanced (Liver Hepatocellular Carcinoma)

Human Protein Atlas survival analysis — favorable = higher expression predicts better survival.

2 prognostic cancer types:

CancerPrognosticp-value
Lung Adenocarcinoma (TCGA)unfavorable5.77e-07
Kidney Renal Papillary Cell Carcinoma (TCGA)unfavorable5.54e-05

Disease associations

OMIM: gene MIM:601107 | disease phenotypes: MIM:237500, MIM:264800

GenCC curated gene-disease

1 curated gene-disease records:

DiseaseClassificationInheritanceRecords
Dubin-Johnson syndromeStrongAutosomal recessive3

Genomics England panels (PanelApp)

Clinical diagnostic gene panels including this gene (2 panels, 2 green/diagnostic-grade). Confidence: green = diagnostic, amber = moderate.

2 panels:

PanelRating
Cholestasisgreen
Neonatal cholestasisgreen

Mondo (2): Dubin-Johnson syndrome (MONDO:0009380), autosomal recessive inherited pseudoxanthoma elasticum (MONDO:0009925)

Orphanet (2): Dubin-Johnson syndrome (Orphanet:234), Pseudoxanthoma elasticum (Orphanet:758)

HPO phenotypes

12 phenotypes (HPO-id order):

HPOTerm
HP:0000007Autosomal recessive inheritance
HP:0000952Jaundice
HP:0001080Biliary tract abnormality
HP:0001392Abnormality of the liver
HP:0001928Abnormality of coagulation
HP:0001945Fever
HP:0002027Abdominal pain
HP:0002240Hepatomegaly
HP:0002908Conjugated hyperbilirubinemia
HP:0004295Abnormal gastric mucosa morphology
HP:0012086Abnormal urinary color
HP:0012378Fatigue

GWAS associations

7 associations:

StudyTraitp-value
GCST90013407_155Liver enzyme levels (gamma-glutamyl transferase)6e-47
GCST012020_372Serum metabolite levels6e-18
GCST002411_7Colorectal cancer5e-11
GCST003017_9Colorectal cancer4e-8
GCST003017_4Colorectal cancer8e-7
GCST010484_6Stent thrombosis in response to clopidogrel treatment1e-6
GCST005351_13Carboplatin disposition in epthelial ovarian cancer5e-6

EFO canonical traits (from GWAS)

2 canonical traits:

EFO IDTrait name
EFO:0006919cardiovascular event measurement
EFO:0004532serum gamma-glutamyl transferase measurement

MeSH disease descriptors

2 disease descriptors:

DescriptorNameTree numbers
D007566Jaundice, Chronic IdiopathicC16.320.565.300.764; C16.614.451.500.250; C18.452.648.300.764; C23.550.291.500.479
D011561Pseudoxanthoma ElasticumC14.907.454.530; C15.378.463.515.530; C16.131.831.766; C16.320.850.750; C17.300.766; C17.800.804.766; C17.800.827.750

Drugs & pharmacology

Drug and pharmacology data

Is drug target: yes

ChEMBL targets (2): CHEMBL3885536 (PROTEIN FAMILY), CHEMBL5748 (SINGLE PROTEIN)

Molecules with ChEMBL bioactivity

Phase ≥1, by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 1,358,927 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).

35 molecules by phase:

MoleculeNamePhasePatents
CHEMBL388590BENZBROMARONE48,286
CHEMBL1541CEFIXIME428,030
CHEMBL1292CLOFAZIMINE415,677
CHEMBL160CYCLOSPORINE4169,776
CHEMBL387675DAPTOMYCIN419,963
CHEMBL178DAUNORUBICIN4205,873
CHEMBL56337EPALRESTAT4111
CHEMBL813EPROSARTAN419,625
CHEMBL553ERLOTINIB4109,860
CHEMBL456ETHACRYNIC ACID420,123
CHEMBL308954ETRAVIRINE411,476
CHEMBL1908360EVEROLIMUS474,649
CHEMBL6067487IVERMECTIN4
CHEMBL1200775LEUPROLIDE ACETATE469,527
CHEMBL897PROBENECID4105,849
CHEMBL1272REPAGLINIDE433,658
CHEMBL772RESERPINE4330,863
CHEMBL444633RIFABUTIN428,036
CHEMBL374478RIFAMPIN494,660
CHEMBL1660RIFAPENTINE412,885
CHEMBL1617RIFAXIMIN4
CHEMBL1064SIMVASTATIN4
CHEMBL269732TACROLIMUS ANHYDROUS4
CHEMBL1201182TEMSIROLIMUS4
CHEMBL1096885VALRUBICIN4
CHEMBL159VINBLASTINE4
CHEMBL603ZAFIRLUKAST4
CHEMBL1651956ALISPORIVIR3
CHEMBL1829174FASIGLIFAM3
CHEMBL77305RUBITECAN3
CHEMBL265502SURAMIN3
CHEMBL1086218VALSPODAR3
CHEMBL4297270BMS-9860202
CHEMBL2013174VEDROPREVIR2
CHEMBL3314565AZD-50991

PharmGKB: 1 entry (CPIC guideline: no)

PharmGKB clinical annotations

51 annotations by evidence level (1 strongest → 4):

VariantAssociationLevelDrugsPhenotypes
rs113646094Metabolism/PK3pravastatin
rs12762549Toxicity,Metabolism/PK3docetaxel
rs17222723Toxicity3tenofovirHIV infectious disease
rs17222723Toxicity3doxorubicinCardiac rhythm disease;Drug Toxicity;Non-Hodgkin Lymphoma
rs17222723Toxicity3methotrexateLeukopenia;Osteosarcoma
rs2273697Other3irinotecanColorectal Neoplasms
rs2273697Toxicity3carbamazepineEpilepsy
rs2273697Metabolism/PK3deferasiroxBeta-thalassemia and related diseases
rs2273697Efficacy3cisplatin;pemetrexedMesothelioma
rs2273697Toxicity3cyclophosphamide;doxorubicin;fluorouracilBreast Neoplasms
rs2273697Metabolism/PK3ceftriaxoneCentral Nervous System Infectious Disorder
rs2273697Efficacy3imatinibGastrointestinal Stromal Tumors
rs2273697Metabolism/PK3talinolol
rs3740065Efficacy3tamoxifenBreast Neoplasms
rs3740065Toxicity3Drugs For Treatment Of TuberculosisToxic liver disease;Tuberculosis
rs3740065Toxicity3methotrexateAcute lymphoblastic leukemia;Burkitt Lymphoma;Drug Toxicity;Lymphoma;Mucositis;Non-Small Cell Lung Carcinoma;Osteosarcoma
rs3740066Toxicity3irinotecanNon-Small Cell Lung Carcinoma
rs3740066Metabolism/PK3carbamazepineEpilepsy
rs3740066Metabolism/PK3mycophenolic acidOrgan Transplantation
rs3740066Metabolism/PK3tacrolimusKidney Transplantation
rs3740066Toxicity3cyclophosphamide;doxorubicin;fluorouracilBreast Neoplasms
rs4148386Metabolism/PK3carbamazepineEpilepsy
rs717620Other3erythromycin
rs717620Efficacy3atorvastatinHypercholesterolemia
rs717620Metabolism/PK3pitavastatin
rs717620Toxicity3tenofovirHIV infectious disease
rs717620Efficacy3cisplatin;doxorubicin;methotrexateOsteosarcoma
rs717620Toxicity3methotrexateAcute lymphoblastic leukemia;Leukemia;Lymphoma;Osteosarcoma
rs717620Metabolism/PK3mycophenolic acid;tacrolimusKidney Transplantation
rs717620Dosage3atorvastatin;simvastatin
rs717620Toxicity3deferasiroxBeta-thalassemia and related diseases
rs717620Metabolism/PK3efavirenzHIV infectious disease
rs717620Toxicity3atazanavir;lopinavir;ritonavir;tenofovir
rs717620Efficacy3tamoxifenBreast Neoplasms
rs717620Toxicity3fluorouracil;leucovorin;oxaliplatinColonic Neoplasms
rs717620Toxicity3fluorouracil;leucovorin;oxaliplatinColorectal Neoplasms
rs717620Toxicity3sorafenibExanthema
rs7917432Toxicity3tenofovirHIV infectious disease
rs8187707Toxicity3tenofovirHIV infectious disease
rs8187710Toxicity3doxorubicinNon-Hodgkin Lymphoma
rs8187710Other3calcein;lopinavir
rs8187710Efficacy3lopinavirHIV infectious disease
rs8187710Toxicity3deferasiroxBeta-thalassemia and related diseases
rs2273697Toxicity4tenofovirHIV infectious disease;Kidney Disorder
rs2273697Toxicity4methotrexateRheumatoid arthritis
rs2273697Toxicity4antiepileptics;carbamazepine;oxcarbazepineEpilepsy
rs3740065Metabolism/PK4methotrexateAcute lymphoblastic leukemia;Burkitt Lymphoma;Osteosarcoma
rs3740066Efficacy4antiepilepticsEpilepsy
rs717620Efficacy4antiepilepticsEpilepsy
rs717620Metabolism/PK4methotrexateAcute lymphoblastic leukemia;Lymphoid Leukemia
rs8187710Toxicity4tenofovirFanconi renotubular syndrome;HIV infectious disease

PharmGKB variants

11 variants:

VariantGenesLevelScore#Clin annotsDrugs
rs717620ABCC233.0017pitavastatin;erythromycin;fluorouracil;leucovorin;oxaliplatin;antiepileptics;atorvastatin;atorvastatin;simvastatin;methotrexate;cisplatin;doxorubicin;methotrexate;deferasirox;efavirenz
rs2273697ABCC233.0011talinolol;antiepileptics;carbamazepine;oxcarbazepine;tenofovir;cisplatin;pemetrexed;imatinib;ceftriaxone;irinotecan;methotrexate;cyclophosphamide;doxorubicin;fluorouracil;deferasirox
rs3740065ABCC233.254methotrexate;tamoxifen;Drugs For Treatment Of Tuberculosis
rs3740066ABCC235.506antiepileptics;irinotecan;cyclophosphamide;doxorubicin;fluorouracil;tacrolimus;carbamazepine;mycophenolic acid
rs4148386ABCC231.001carbamazepine
rs7917432ABCC2, RUFY232.001tenofovir
rs8187707ABCC230.251tenofovir
rs8187710ABCC232.255tenofovir;lopinavir;calcein;lopinavir;doxorubicin;deferasirox
rs12762549ABCC231.001docetaxel
rs17222723ABCC232.253doxorubicin;methotrexate;tenofovir
rs113646094ABCC231.001pravastatin

PharmGKB variant annotations

Per-publication pharmacogenomic findings for this gene (significant associations).

showing 59 of 119 published findings:

VariantDrug(s)CategoryFindingPMID
rs717620methotrexateToxicityAllele T is associated with increased risk of Drug Toxicity when treated with methotrexate in children with Precursor Cell Lymphoblastic Leukemia-Lymphoma as compared to allele C.PMID:24404132
rs717620methotrexateMetabolism/PKAllele T is associated with decreased clearance of methotrexate in children with Precursor Cell Lymphoblastic Leukemia-Lymphoma as compared to allele C.PMID:24404132
rs3740065methotrexateMetabolism/PKGenotypes AG + GG are associated with increased plasma level when treated with methotrexate in children with Precursor Cell Lymphoblastic Leukemia-Lymphoma as compared to genotype AA.PMID:23222202
rs2273697carbamazepine, oxcarbazepineEfficacyGenotype AG is associated with resistance to carbamazepine or oxcarbazepine in people with Epilepsy as compared to genotype GG.PMID:25155934
rs2273697deferasiroxMetabolism/PKGenotype AG is associated with increased concentrations of deferasirox in people with beta-Thalassemia as compared to genotype GG.PMID:25348619
rs8187710cyclophosphamide, epirubicin, paclitaxelToxicityAllele A is associated with decreased likelihood of Peripheral Nervous System Diseases when treated with cyclophosphamide, epirubicin and paclitaxel in women with Breast Neoplasms as compared to allele G.PMID:24599932
rs17222723cyclophosphamide, epirubicin, paclitaxelToxicityAllele A is associated with decreased likelihood of Peripheral Nervous System Diseases when treated with cyclophosphamide, epirubicin and paclitaxel in women with Breast Neoplasms as compared to allele T.PMID:24599932
rs3740065cyclosporine, methotrexateEfficacyGenotype AA is associated with increased risk of Graft vs Host Disease when treated with cyclosporine and methotrexate in people with Hematopoietic stem cell transplantation as compared to genotype AG.PMID:25425682
rs717620tamoxifenEfficacyGenotype CT is associated with increased response to tamoxifen in women Breast Neoplasms as compared to genotype CC.PMID:27110128
rs3740066mycophenolic acidMetabolism/PKGenotype CT is associated with decreased concentrations of mycophenolic acid in people with lung transplantation as compared to genotypes CC + TT.PMID:26307985
rs3740066vincristineToxicityAllele T is associated with decreased likelihood of Neurotoxicity Syndromes when treated with vincristine in children with Precursor Cell Lymphoblastic Leukemia-Lymphoma as compared to allele C.PMID:27180762
rs12826vincristineToxicityAllele T is associated with decreased likelihood of Neurotoxicity Syndromes when treated with vincristine in children with Precursor Cell Lymphoblastic Leukemia-Lymphoma as compared to allele C.PMID:27180762
rs717620sorafenibToxicityGenotype CC is associated with increased risk of Exanthema when treated with sorafenib in people with Carcinoma, Renal Cell as compared to genotype CT.PMID:23237922
rs717620antiepilepticsEfficacyGenotypes CT + TT are associated with increased resistance to antiepileptics in people with Epilepsy as compared to genotype CC.PMID:27816260
rs2273697deferasiroxMetabolism/PKGenotype AG is associated with increased exposure to deferasirox in children with beta-Thalassemia as compared to genotype GG.PMID:28346059
rs717620diclofenacToxicityAllele T is associated with increased likelihood of Toxic liver disease when treated with diclofenac as compared to allele C.PMID:17241877
rs8187710lumefantrineMetabolism/PKGenotype AA is associated with increased concentrations of lumefantrine in children with Malaria as compared to genotypes AG + GG.PMID:28639487
rs2273697mycophenolic acidMetabolism/PKAllele A is associated with decreased exposure to mycophenolic acid in people with Kidney Transplantation as compared to allele G.PMID:28624888
rs2273697mycophenolic acidMetabolism/PKAllele A is associated with decreased exposure to mycophenolic acid as compared to allele G.PMID:28624888
rs717620mycophenolic acidMetabolism/PKAllele T is associated with exposure to mycophenolic acid in people with Kidney Transplantation as compared to allele C.PMID:28624888
rs717620atorvastatinEfficacyGenotypes CT + TT are associated with decreased response to atorvastatin in men with Hypercholesterolemia as compared to genotype CC.PMID:29178257
rs3740066tacrolimusMetabolism/PKGenotypes CT + TT is associated with increased dose-adjusted trough concentrations of tacrolimus in people with Kidney Transplantation as compared to genotype CC.PMID:28316087
rs717620tacrolimusMetabolism/PKGenotypes CT + TT is associated with increased dose-adjusted trough concentrations of tacrolimus in people with Kidney Transplantation as compared to genotype CC.PMID:28316087
rs3740066tacrolimusMetabolism/PKGenotypes CT + TT is associated with decreased dose of tacrolimus in people with Kidney Transplantation as compared to genotype CC.PMID:28316087
rs3740066methotrexateMetabolism/PKGenotype TT is associated with decreased concentrations of methotrexate in children with Osteosarcoma as compared to genotypes CC + CT.PMID:27566582
rs2273697methotrexateToxicityAllele A is associated with increased risk of Bone Marrow Diseases when treated with methotrexate in children with Osteosarcoma as compared to allele G.PMID:27566582
rs717620voriconazoleMetabolism/PKGenotypes CT + TT is associated with increased trough concentration of voriconazole in children as compared to genotype CC.PMID:29914286
rs2273697cyclophosphamide, doxorubicin, fluorouracilToxicityGenotype GG is associated with increased risk of Anemia when treated with cyclophosphamide, doxorubicin and fluorouracil in women with Breast Neoplasms as compared to genotypes AA + AG.PMID:29507678
rs3740066cyclophosphamide, doxorubicin, fluorouracilToxicityGenotype TT is associated with increased risk of Neutropenia when treated with cyclophosphamide, doxorubicin and fluorouracil in women with Breast Neoplasms as compared to genotypes CC + CT.PMID:29507678
rs3740066cyclophosphamide, doxorubicin, fluorouracilToxicityGenotypes CT + TT are associated with increased risk of Nausea when treated with cyclophosphamide, doxorubicin and fluorouracil in women with Breast Neoplasms as compared to genotype CC.PMID:29507678
rs8187692rosuvastatinMetabolism/PKAllele A is associated with increased exposure to rosuvastatin in healthy individuals as compared to allele G.PMID:30100615
rs17216198rosuvastatinMetabolism/PKAllele T is associated with decreased exposure to rosuvastatin in healthy individuals as compared to allele C.PMID:30100615
rs3740066rosuvastatinMetabolism/PKAllele T is associated with decreased exposure to rosuvastatin in healthy individuals as compared to allele C.PMID:30100615
rs7899457rosuvastatinMetabolism/PKAllele T is associated with decreased exposure to rosuvastatin in healthy individuals as compared to allele C.PMID:30100615
rs8187706rosuvastatinMetabolism/PKAllele A is associated with decreased exposure to rosuvastatin in healthy individuals as compared to allele G.PMID:30100615
rs17216177rosuvastatinMetabolism/PKAllele C is associated with decreased exposure to rosuvastatin in healthy individuals as compared to allele T.PMID:30100615
rs8187710rosuvastatinMetabolism/PKAllele A is associated with decreased exposure to rosuvastatin in healthy individuals as compared to allele G.PMID:30100615
rs717620mycophenolic acidMetabolism/PKGenotype TT is associated with increased dose-adjusted trough concentrations of mycophenolic acid in people with Kidney Transplantation as compared to genotypes CC + CT.PMID:30345879
rs717620simvastatinEfficacyGenotypes CT + TT is associated with decreased response to simvastatin in people with Hypercholesterolemia as compared to genotype CC.PMID:30024814
rs2273697imatinibEfficacyGenotype GG is associated with decreased progression-free survival when treated with imatinib in people with Gastrointestinal Stromal Tumors as compared to genotypes AA + AG.PMID:30237583
rs2273897emtricitabineMetabolism/PKGenotype TT is associated with increased concentrations of emtricitabine in people with HIV Infections and Pregnancy as compared to genotypes CC + CT.PMID:30767719
rs717620pitavastatinMetabolism/PKAllele T is associated with decreased exposure to pitavastatin in healthy individuals as compared to allele C.PMID:23007012
rs717620tenofovir disoproxil fumarateToxicityGenotype TT is associated with increased severity of nephrotoxicity due to tenofovir disoproxil fumarate in people with HIV Infections as compared to genotypes CC + CT.PMID:31619748
rs3740065Drugs For Treatment Of TuberculosisToxicityGenotypes AG + GG are associated with decreased risk of Toxic liver disease due to Drugs For Treatment Of Tuberculosis in people with Tuberculosis as compared to genotype AA.PMID:31648372
rs2273697atorvastatinEfficacyGenotype AG is associated with decreased response to atorvastatin in healthy individuals as compared to genotype GG.PMID:28435225
rs717620methotrexateMetabolism/PKGenotypes CT + TT are associated with decreased concentrations of methotrexate in children with Precursor Cell Lymphoblastic Leukemia-Lymphoma as compared to genotype CC.PMID:31870219
rs717620methotrexateToxicityGenotypes CT + TT are associated with increased risk of Leukopenia when treated with methotrexate in children with Precursor Cell Lymphoblastic Leukemia-Lymphoma as compared to genotype CC.PMID:31870219
rs717620cisplatin, doxorubicin, methotrexateEfficacyGenotypes CT + TT is associated with decreased response to cisplatin, doxorubicin and methotrexate in people with Osteosarcoma as compared to genotype CC.PMID:21887680
rs17222723methotrexateToxicityGenotypes AT + TT are associated with increased risk of Leukopenia when treated with methotrexate in people with Osteosarcoma as compared to genotype AA.PMID:21887680
rs717620methotrexateToxicityGenotypes CT + TT is associated with decreased discontinuation of methotrexate in people with Arthritis, Rheumatoid as compared to genotype CC.PMID:34575187
rs3740066anthracyclines and related substancesToxicityGenotype TT is associated with increased likelihood of febrile neutropenia when treated with anthracyclines and related substances in people with Soft Tissue Neoplasms and Sarcoma as compared to genotypes CC + CT.PMID:35455734
rs3740066anthracyclines and related substancesEfficacyGenotype TT is associated with decreased overall survival when treated with anthracyclines and related substances in people with Soft Tissue Neoplasms and Sarcoma as compared to genotypes CC + CT.PMID:35455734
rs2273697anthracyclines and related substancesEfficacyGenotypes AG + GG is associated with increased Recurrence free survival when treated with anthracyclines and related substances in people with Soft Tissue Neoplasms and Sarcoma as compared to genotype AA.PMID:35455734
rs3740066tacrolimusMetabolism/PKGenotype TT is associated with increased dose-adjusted trough concentrations of tacrolimus in people with Kidney Transplantation as compared to genotype CC.PMID:36118414
rs2273697lacosamideEfficacyAllele A is associated with increased resistance to lacosamide in children with Epilepsy as compared to allele G.PMID:36253887
rs717620lacosamideEfficacyAllele T is associated with increased resistance to lacosamide in children with Epilepsy as compared to allele C.PMID:36253887
rs2273697lacosamideMetabolism/PKGenotype GG is associated with increased concentrations of lacosamide in children with Epilepsy as compared to genotypes AA + AG.PMID:36253887
rs717620lacosamideMetabolism/PKGenotype CC is associated with increased concentrations of lacosamide in children with Epilepsy as compared to genotypes CT + TT.PMID:36253887
rs2273697rasagilineMetabolism/PKGenotype AA is associated with decreased clearance of rasagiline in healthy individuals as compared to genotypes AG + GG.PMID:36297437

GtoPdb / IUPHAR curated pharmacology

(IUPHAR/BPS Guide to Pharmacology — expert-curated)

Target class: transporter — ABCC subfamily

Most potent curated ligand interactions (1 total), top 1:

LigandActionAffinityParameter
PAK-104PInhibition5.43pKi

Binding affinities (BindingDB)

164 measured of 601 human assays (649 total across all organisms); most potent 50 below. Values come from heterogeneous assays and are not directly comparable.

LigandMeasureValuePatent
1-(2-{4-[5-chloro-1-(4-fluorophenyl)-1H-indol-3-yl]piperidin-1-yl}ethyl)imidazolidin-2-oneKI0.38 nM
(2S)-1-[[4-(difluoromethyl)-6-[2-(difluoromethyl)-4-pyridinyl]-3-pyridinyl]oxy]-2,4-dimethylpentan-2-amineIC500.5 nMUS-10155760: Biaryl kinase inhibitors
2,2-dimethylbutyric acid, 8-ester with (4R,6R)-6-(2-((1S,2S,6R,8S,8aR)-1,2,6,7,8,8a-hexahydro-8-hydroxy-2,6-dimethyl-1-naphthyl)ethyl)tetrahydro-4-hydroxy-2H-pyran-2-oneIC500.9 nM
escitalopramKI1 nM
cid_1548953KI1 nM
(2S)-1-[[2-(difluoromethyl)-6-[2-(difluoromethyl)-4-pyridinyl]-3-pyridinyl]oxy]-2,4-dimethylpentan-2-amineIC501.2 nMUS-10155760: Biaryl kinase inhibitors
(1R)-N-(prop-2-yn-1-yl)-2,3-dihydro-1H-inden-1-amineKI1.4 nM
4-[2-(tert-butylamino)-1-hydroxyethyl]-2-(hydroxymethyl)phenolEC501.5 nM
5-[2-(4-Benzo[d]isothiazol-3-yl-piperazin-1-yl)-ethyl]-6-chloro-1,3-dihydro-indol-2-oneKI1.6 nM
CHEMBL195KI1.6 nM
(S)-4-((3-(2-(dimethylamino)ethyl)-1H-indol-5-yl)methyl)oxazolidin-2-oneKD1.8 nM
PermaxKI1.91 nM
2-methyl-2-[4-(3-methyl-2-oxo-8-quinolin-3-ylimidazo[4,5-c]quinolin-1-yl)phenyl]propanenitrileIC502 nMUS-9284315: Three-ring PI3K and/or mTOR inhibitor
(R)-3-methyl-1-((S)-3-phenyl-2-(pyrazine-6-carboxamido)propanamido)butylboronic acidIC502.4 nM
5-(4-chlorophenyl)-1-(2,4-dichlorophenyl)-4-methyl-N-(piperidin-1-yl)-1H-pyrazole-3-carboxamideKD2.5 nM
2-(3-CYANO-4-ISOBUTOXY-PHENYL)-4-METHYL-5-THIAZOLE-CARBOXYLIC ACIDIC502.9 nM
(1S,3R,5Z,7E)-9,10-secocholesta-5,7,10(19)-triene-1,3,25-triolEC503 nM
(2-{4-[(1Z)-1,2-diphenylbut-1-en-1-yl]phenoxy}ethyl)dimethylamineKI5 nM
1-(4-Amino-6,7-dimethoxy-2-quinazolinyl)-4-((tetrahydro-2-furanyl)carbonyl)piperazineIC505 nM
Staurosporine, 8IC506.5 nM
Atorvastatin lactoneIC507 nM
FCE-21336EC5013 nM
AmisulprideKI13 nM
4-[5-(4-methylphenyl)-3-(trifluoromethyl)-1H-pyrazol-1-yl]benzene-1-sulfonamideKI16 nM
(+/-)-12-Methyl-1,2,3,4,9,13b-hexahydro-2,4a,5-triaza-tribenzo[a,c,e]cyclohepteneKI18 nM
2-Methyl-butyric acid 8-[2-(4-hydroxy-6-oxo-tetrahydro-pyran-2-yl)-ethyl]-7-methyl-1,2,3,7,8,8a-hexahydro-naphthalen-1-yl ester((+)-compactin)IC5023 nM
(3E)-3-(6H-benzo[c][1]benzoxepin-11-ylidene)-N,N-dimethylpropan-1-amineKI25 nMUS-8629135: Pharmaceutical compositions comprising RET inhibitors and methods for the treatment of cancer
(2-{4-[(2-butyl-1-benzofuran-3-yl)carbonyl]-2,6-diiodophenoxy}ethyl)diethylamineKI25 nM
CS-514IC5030 nM
1-(4-{3-[4-(6-Fluoro-benzo[d]isoxazol-3-yl)-piperidin-1-yl]-propoxy}-3-methoxy-phenyl)-ethanoneKI33 nM
(+/-)1-(4-tert-butylphenyl)-4-(4-(hydroxydiphenylmethyl)piperidin-1-yl)butan-1-olIC5041 nM
1-(3-chlorophenyl)piperazineKI42 nM
5-Chloro-3-(4-methanesulfonyl-phenyl)-6’’-methyl-[2,3’’]bipyridinylIC5070 nM
2-{3-[4-(3-chlorophenyl)piperazin-1-yl]propyl}-5-ethyl-4-(2-phenoxyethyl)-2,4-dihydro-3H-1,2,4-triazol-3-oneKI80 nM
[3-(2-Chloro-phenothiazin-10-yl)-propyl]-dimethyl-amine( Chlorpromazine)KI116 nM
APOKYNKI117 nM
N-hydroxy-N’-phenyloctanediamideIC50140 nM
8-Chloro-11-(4-methyl-piperazin-1-yl)-5H-dibenzo[b,e][1,4]diazepine(Clopazine)IC50150 nM
p-aminophenyl sulfoneKI183 nM
4-[4-(4-Chloro-phenyl)-4-hydroxy-piperidin-1-yl]-1-(4-fluoro-phenyl)-butan-1-one;propionate(HCl)KI190 nM
UrapidilKI213 nM
AsendinKI221 nM
4-amino-5-chloro-N-[2-(diethylamino)ethyl]-2-methoxy-benzamide;hydrochlorideIC50280 nMUS-11147820: Methods for treating GI tract disorders
CHEMBL2074720IC50280 nM
NORTRIPTYLINEKI294 nM
N,N-dimethyl-2-[5-(1H-1,2,4-triazol-1-ylmethyl)-1H-indol-3-yl]ethanamineIC50316 nM
2-(tert-butylamino)-1-(3-chlorophenyl)propan-1-oneIC50330 nM
4-chloro-N-(2-morpholin-4-ylethyl)benzamideIC50360 nM
1-Butyl-3-(p-methylphenylsulfonyl)ureaIC50380 nM
CHEMBL2074750IC50400 nM

ChEMBL bioactivities

22 potent at pChembl≥5 of 84 total, top 22 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).

pChemblTypeValueUnitMolecule
6.55IC50280nMBILIRUBIN MONOGLUCURONIDE
6.40IC50400nMCHEMBL3038248
5.62IC502410nMFASIGLIFAM
5.51IC503100nMCYCLOSPORINE
5.48IC503300nMLEUKOTRIEN C4
5.43Ki3700nMCHEMBL2074650
5.42IC503850nMETHACRYNIC ACID
5.40IC504000nMMK-571
5.39IC504100nMCYCLOSPORINE
5.39IC504100nMCHEMBL3974624
5.35IC504500nMCHEMBL3921707
5.35IC504500nMCHEMBL3263914
5.33Ki4700nMCYCLOSPORINE
5.32IC504800nMCHEMBL3263916
5.20IC506300nMCHEMBL3263915
5.14IC507300nMCHEMBL3964042
5.11IC507800nMETRAVIRINE
5.09Ki8110nMCYCLOSPORINE
5.09IC508200nMCHEMBL3945493
5.05IC509000nMCHEMBL3263569
5.00IC501e+04nMERLOTINIB
5.00IC501e+04nMMK-571

PubChem BioAssay actives

21 with measured affinity, of 1190 total; 18 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.

CompoundAssayTypeValueUnit
(5S,6R,7E,9E,11Z,14Z)-6-[(2S)-2-[[(4S)-4-amino-4-carboxybutanoyl]amino]-3-(carboxymethylamino)-3-oxopropyl]sulfanyl-5-hydroxyicosa-7,9,11,14-tetraenoic acid370719: Inhibition of ABCC2 overexpressed in MDCK cells at 100 uM by flow cytometric-based chloromethylfluorescein-diacetate accumulation assayic500.1500uM
(3S,6S)-6-[3-[2-[[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxopyrrol-2-ylidene)methyl]-4-methyl-1H-pyrrol-2-yl]methyl]-5-[(Z)-(3-ethenyl-4-methyl-5-oxopyrrol-2-ylidene)methyl]-4-methyl-1H-pyrrol-3-yl]propanoyloxy]-3,4,5-trihydroxyoxane-2-carboxylic acid679667: TP_TRANSPORTER: inhibition of LTC4 uptake (LTC4: 0.05 uM) in HepG2 cellsic500.2800uM
(2S,3R,4S,5S,6S)-6-[3-[2-[[3-[3-[(2S,3S,4R,5R,6R)-6-carboxy-3,4,5-trihydroxyoxan-2-yl]oxy-3-oxopropyl]-5-[(Z)-(3-ethenyl-4-methyl-5-oxopyrrol-2-ylidene)methyl]-4-methyl-1H-pyrrol-2-yl]methyl]-5-[(Z)-(4-ethenyl-3-methyl-5-oxopyrrol-2-ylidene)methyl]-4-methyl-1H-pyrrol-3-yl]propanoyloxy]-3,4,5-trihydroxyoxane-2-carboxylic acid679667: TP_TRANSPORTER: inhibition of LTC4 uptake (LTC4: 0.05 uM) in HepG2 cellsic500.4000uM
2-[(3S)-6-[[3-[2,6-dimethyl-4-(3-methylsulfonylpropoxy)phenyl]phenyl]methoxy]-2,3-dihydro-1-benzofuran-3-yl]acetic acid1418809: Inhibition of human MRP2ic502.4100uM
2-(4-benzhydrylpiperazin-1-yl)ethyl 5-[(4R,6R)-4,6-dimethyl-2-oxo-1,3,2lambda5-dioxaphosphinan-2-yl]-2,6-dimethyl-4-(3-nitrophenyl)pyridine-3-carboxylate678981: TP_TRANSPORTER: inhibition of LTC4 uptake in membrane vesicles from MRP2-expressing LLC PK1 cellski3.7000uM
Ethacrynic Acid1473739: Inhibition of human MRP2 overexpressed in Sf9 cell membrane vesicles assessed as uptake of [3H]-estradiol-17beta-D-glucuronide in presence of ATP and GSH measured after 20 mins by membrane vesicle transport assayic503.8500uM
3-[[3-[(E)-2-(7-chloroquinolin-2-yl)ethenyl]phenyl]-[3-(dimethylamino)-3-oxopropyl]sulfanylmethyl]sulfanylpropanoic acid680797: TP_TRANSPORTER: inhibition of PAH uptake (PAH: 0.1uM) in membrane vesicles from MRP2-expressing HEK cellsic504.0000uM
(2Z)-2-[[1-(cyclohexylmethyl)-5-methoxyindol-3-yl]methylidene]-4,6-dihydroxy-1-benzofuran-3-one1327018: Inhibition of ABCC2 (unknown origin) expressed in MDCK2 cells assessed as inhibition of calcein-AM efflux measured after 30 mins in presence of ABCB1 inhibitor GF120918 and ABCC1 inhibitor MK-571 by flow cytometryic504.1000uM
(2Z)-2-[(5-bromo-1-methylindol-3-yl)methylidene]-4,6-dihydroxy-1-benzofuran-3-one1327018: Inhibition of ABCC2 (unknown origin) expressed in MDCK2 cells assessed as inhibition of calcein-AM efflux measured after 30 mins in presence of ABCB1 inhibitor GF120918 and ABCC1 inhibitor MK-571 by flow cytometryic504.5000uM
(2Z)-2-[(1-butyl-7-methylindol-3-yl)methylidene]-4,6-dihydroxy-1-benzofuran-3-one1327018: Inhibition of ABCC2 (unknown origin) expressed in MDCK2 cells assessed as inhibition of calcein-AM efflux measured after 30 mins in presence of ABCB1 inhibitor GF120918 and ABCC1 inhibitor MK-571 by flow cytometryic504.5000uM
cyclosporine678981: TP_TRANSPORTER: inhibition of LTC4 uptake in membrane vesicles from MRP2-expressing LLC PK1 cellski4.7000uM
(2Z)-2-[(1-butyl-5-methylindol-3-yl)methylidene]-4,6-dihydroxy-1-benzofuran-3-one1327018: Inhibition of ABCC2 (unknown origin) expressed in MDCK2 cells assessed as inhibition of calcein-AM efflux measured after 30 mins in presence of ABCB1 inhibitor GF120918 and ABCC1 inhibitor MK-571 by flow cytometryic504.8000uM
(2Z)-2-[(1-butyl-7-methoxyindol-3-yl)methylidene]-4,6-dihydroxy-1-benzofuran-3-one1327018: Inhibition of ABCC2 (unknown origin) expressed in MDCK2 cells assessed as inhibition of calcein-AM efflux measured after 30 mins in presence of ABCB1 inhibitor GF120918 and ABCC1 inhibitor MK-571 by flow cytometryic506.3000uM
(2Z)-2-[[1-[(3-bromophenyl)methyl]-5-methoxyindol-3-yl]methylidene]-4,6-dihydroxy-1-benzofuran-3-one1327018: Inhibition of ABCC2 (unknown origin) expressed in MDCK2 cells assessed as inhibition of calcein-AM efflux measured after 30 mins in presence of ABCB1 inhibitor GF120918 and ABCC1 inhibitor MK-571 by flow cytometryic507.3000uM
Etravirine586880: Inhibition of MRP2 expressed in MDCK2 cells assessed as cell growth inhibition by calcein and pheophorbide A efflux assaysic507.8000uM
(2Z)-2-[(1-butyl-3-methylindol-2-yl)methylidene]-4,6-dihydroxy-1-benzofuran-3-one1327018: Inhibition of ABCC2 (unknown origin) expressed in MDCK2 cells assessed as inhibition of calcein-AM efflux measured after 30 mins in presence of ABCB1 inhibitor GF120918 and ABCC1 inhibitor MK-571 by flow cytometryic508.2000uM
(2Z)-2-[(1-butylindol-2-yl)methylidene]-4,6-dihydroxy-1-benzofuran-3-one1327018: Inhibition of ABCC2 (unknown origin) expressed in MDCK2 cells assessed as inhibition of calcein-AM efflux measured after 30 mins in presence of ABCB1 inhibitor GF120918 and ABCC1 inhibitor MK-571 by flow cytometryic509.0000uM
Erlotinib699529: Inhibition of human MRP2ic5010.0000uM

CTD chemical–gene interactions

303 total (human), top 30 by PubMed support.

ChemicalActions (top 5)PubMed papers
Cisplatindecreases reaction, increases response to substance, decreases response to substance, increases expression, decreases expression (+4 more)20
verlukastdecreases reaction, increases export, increases transport, affects cotreatment, increases uptake (+4 more)13
estradiol-17 beta-glucuronideincreases uptake, increases reaction, decreases activity, affects localization, decreases reaction (+4 more)11
sodium arseniteincreases abundance, increases expression, increases reaction, decreases response to substance, affects expression10
Cyclosporinedecreases reaction, increases transport, decreases activity, affects transport, increases abundance (+3 more)10
Methotrexateaffects metabolic processing, decreases response to substance, decreases reaction, increases expression, affects response to substance (+4 more)9
Rifampinaffects export, affects cotreatment, increases expression9
Acetaminophenaffects activity, increases transport, affects cotreatment, decreases expression, increases expression7
5(6)-carboxy-2’,7’-dichlorofluoresceinincreases uptake, increases export, increases reaction, decreases reaction, increases transport (+1 more)6
Probeneciddecreases reaction, increases export, affects transport, increases reaction, decreases response to substance (+2 more)6
sulforaphaneincreases expression5
ochratoxin Aaffects export, affects transport, decreases reaction, decreases expression, decreases activity (+1 more)5
calcein AMaffects transport, increases export, increases transport, decreases reaction, increases expression5
Benzo(a)pyrenedecreases expression, increases expression, increases methylation5
Indomethacinincreases abundance, affects export, affects transport, increases reaction, decreases activity (+2 more)5
Phenobarbitalaffects expression, increases expression5
Resveratrolaffects binding, increases reaction, increases expression, decreases expression, affects export (+1 more)4
Arsenic Trioxidedecreases response to substance, decreases expression, increases expression4
Adenosine Triphosphateaffects metabolic processing, affects activity, increases transport, affects reaction, affects cotreatment (+2 more)4
Lithocholic Acidincreases expression, decreases activity, increases abundance, decreases expression, increases activity4
Mercuryincreases transport, affects reaction, affects abundance, affects response to substance, affects cotreatment (+1 more)4
Aflatoxin B1decreases methylation, decreases reaction, affects expression, affects cotreatment, decreases expression (+1 more)4
Paclitaxelaffects response to substance, affects transport, decreases response to substance, increases export, decreases reaction (+2 more)4
Leukotriene C4affects transport, decreases reaction, increases transport4
beta-Naphthoflavoneincreases expression4
Genisteinincreases expression, affects export, affects binding, increases reaction, increases activity (+1 more)4
bisphenol Aaffects expression, affects methylation, affects cotreatment, increases methylation, increases expression3
fluorexonaffects transport, increases abundance, decreases reaction, affects export3
arseniteaffects transport, increases expression, increases abundance, decreases reaction, affects reaction (+1 more)3
oltiprazincreases expression3

ChEMBL screening assays

159 unique, capped per target: 84 functional, 40 admet, 35 binding

Representative assays (with source publication via chembl_document):

Assay IDTypeDescriptionSource paper
CHEMBL2075613FunctionalTP_TRANSPORTER: transepithelial transport (basal to apical) of Phalloidin at a concentration of 1 uM in MRP2- and OATP-C-expressing MDCKII cellsCharacterization of the transport of the bicyclic peptide phalloidin by human hepatic transport proteins. — *Naunyn Schmiedebergs Arch Pharmacol*
CHEMBL1006005BindingEffect on human MRP2-mediated estradiol-17-beta-glucuronide transport in Sf9 cells inverted membrane vesicles relative to controlPrediction and identification of drug interactions with the human ATP-binding cassette transporter multidrug-resistance associated protein 2 (MRP2; ABCC2). — *J Med Chem*
CHEMBL1743160ADMETSubstrates of transporters of clinical importance in the absorption and disposition of drugs, MRP2Membrane transporters in drug development. — *Nat Rev Drug Discov*

Cellosaurus cell lines

9 cell lines: 6 cancer cell line, 3 spontaneously immortalized cell line

First 10 cell lines (id-ordered, not curated):

CellosaurusNameCategorySex
CVCL_9U72MDCKII-MRP2/UGT1A1Spontaneously immortalized cell lineFemale
CVCL_A2JYMDCK2-ABCC2Spontaneously immortalized cell lineFemale
CVCL_B2M0Abcam A-549 ABCC2 KOCancer cell lineMale
CVCL_B5ZVC2BBe1 MRP2 KOCancer cell lineMale
CVCL_B5ZWC2BBe1 MDR1/MRP2 KOCancer cell lineMale
CVCL_B5ZXC2BBe1 MRP2/BCRP KOCancer cell lineMale
CVCL_B6AGHepaRG MRP2 KOCancer cell lineFemale
CVCL_B6AHHepaRG MRP2/MRP4 KOCancer cell lineFemale
CVCL_X022MDCK-MRP2Spontaneously immortalized cell lineFemale

Clinical trials (associated diseases)

Via MONDO — disease-level, not drug-specific.

28 trials:

NCTPhaseStatusTitle
NCT05832580Phase 3RECRUITINGThe Prevention of Systemic Ectopic Mineralization in Pseudoxanthoma Elasticum
NCT01525875Phase 2COMPLETEDMagnesium Supplements In The Treatment Of Pseudoxanthoma Elasticum (PXE)
NCT02537054Phase 2COMPLETEDIntravitreal Aflibercept for Therapy of Patients With Pseudoxanthoma Elasticum (PXE)
NCT04441671Phase 2WITHDRAWNOral Pyrophosphate Absorption in PXE Disease
NCT05569252Phase 2COMPLETEDA Study of DS-1211b in Individuals With PseudoXanthoma Elasticum
NCT06462547Phase 2ACTIVE_NOT_RECRUITINGADAPT Study: Long-term Safety Study of INZ-701 in Patients With ENPP1 Deficiency and ABCC6 Deficiency
NCT05734196Phase 1ACTIVE_NOT_RECRUITINGThe ENERGY Study: Evaluation of Safety and Tolerability of INZ-701 in Infants With ENPP1 Deficiency or ABCC6 Deficiency
NCT00470977Phase 1/2COMPLETEDTreatment of Exudative and Vasogenic Chorioretinal Diseases Including Variants of AMD and Other CNV Related Maculopathy
NCT05030831Phase 1/2COMPLETEDEvaluation of Safety, Tolerability, and Efficacy of INZ-701 in Adults With ABCC6 Deficiency Causing PXE
NCT00341419Not specifiedCOMPLETEDGenetic Analysis of Patients With Pseudoxanthoma Elasticum
NCT00555113Not specifiedCOMPLETEDEvolution of Visual Impairment During Pseudoxanthoma Elasticum
NCT01446380Not specifiedUNKNOWNPhenotypic Expressions in a French Pseudoxanthoma-Elasticum Cohort
NCT01446393Not specifiedCOMPLETEDFunctional and Structural Characterization of Arteriopathy in Pseudoxanthoma Elasticum (PXE)
NCT01731080Not specifiedUNKNOWNArterial Wall Calcium Load in Pseudoxanthoma Elasticum
NCT02108392Not specifiedUNKNOWNCharacterization of Pseudoxanthoma Elasticum
NCT03070860Not specifiedCOMPLETEDWhat’s Happen Under the Calcification Process in Pseudoxanthoma Elasticum
NCT03364504Not specifiedUNKNOWNBiological Collection of Kidney Cells
NCT03758534Not specifiedUNKNOWNNatural History of GACI With or Without ARHR2 or PXE
NCT03813550Not specifiedUNKNOWNIntestinal Microbiota and Vitamin K Levels in PXE Patients (IMPROVE Study)
NCT04868578Not specifiedRECRUITINGPPI Supplementation to Fight ECtopIc Calcification in PXE
NCT05025722Not specifiedCOMPLETEDPseudoxanthoma Elasticum (PXE) Natural History Biomarkers in PXE Individuals and Their Biological Non-PXE Siblings
NCT05246189Not specifiedCOMPLETEDEmployment of Patients With Pseudoxanthoma Elasticum
NCT05662085Not specifiedACTIVE_NOT_RECRUITINGProgression Rate of Pseudoxanthoma Elasticum-associated Choroidal and Retinal Degeneration
NCT06636344Not specifiedRECRUITINGImpact of Optimized Recruitment and Follow-up of Patients With Pseudoxanthoma Elasticum (PXE)
NCT07006649Not specifiedRECRUITINGCHOPXE - Analysis of Choriocapillaris Flow Deficits in Patients With Pseudoxanthoma Elasticum
NCT07048106Not specifiedRECRUITINGProgression Assessment of PXE-associated Alterations
NCT07323082Not specifiedRECRUITINGPurinergic Compounds in Pseudoxanthoma Elasticum
NCT07745179Not specifiedCOMPLETEDNatural History Study: ENPP1 Deficiency or the Early-Onset Form of ABCC6 Deficiency

Predicted chemistry — Sugi Predict

The predicted patent-compound landscape for ABCC2 across ~30M SureChEMBL compounds — explore on Sugi Predict.