ABCC6
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Also known as MRP6EST349056MLP1URG7
Summary
ABCC6 (ATP binding cassette subfamily C member 6, HGNC:57) is a protein-coding gene on chromosome 16p13.11, encoding ATP-binding cassette sub-family C member 6 (O95255). ATP-dependent transporter of the ATP-binding cassette (ABC) family that actively extrudes physiological compounds, and xenobiotics from cells.
The protein encoded by this gene is a member of the superfamily of ATP-binding cassette (ABC) transporters. ABC proteins transport various molecules across extra- and intra-cellular membranes. ABC genes are divided into seven distinct subfamilies (ABC1, MDR/TAP, MRP, ALD, OABP, GCN20, White). The encoded protein, a member of the MRP subfamily, is involved in multi-drug resistance. Mutations in this gene cause pseudoxanthoma elasticum. Alternatively spliced transcript variants that encode different proteins have been described for this gene.
Source: NCBI Gene 368 — RefSeq curated summary.
At a glance
- Gene–disease (curated): inherited pseudoxanthoma elasticum (Definitive, ClinGen) — +3 more curated relationships
- GWAS associations: 5
- Clinical variants (ClinVar): 1,873 total — 160 pathogenic, 128 likely-pathogenic
- Phenotypes (HPO): 136
- Druggable target: yes
- MANE Select transcript:
NM_001171
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:57 |
| Approved symbol | ABCC6 |
| Name | ATP binding cassette subfamily C member 6 |
| Location | 16p13.11 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | MRP6, EST349056, MLP1, URG7 |
| Ensembl gene | ENSG00000091262 |
| Ensembl biotype | protein_coding |
| OMIM | 603234 |
| Entrez | 368 |
Gene structure
Transcript identifiers
Ensembl transcripts: 27 — 22 protein_coding, 3 nonsense_mediated_decay, 2 retained_intron
ENST00000205557, ENST00000456970, ENST00000574094, ENST00000575728, ENST00000576204, ENST00000576683, ENST00000577103, ENST00000622290, ENST00000909083, ENST00000909084, ENST00000909085, ENST00000909086, ENST00000909087, ENST00000909088, ENST00000909089, ENST00000909090, ENST00000909091, ENST00000909092, ENST00000909093, ENST00000909094, ENST00000909095, ENST00000909096, ENST00000909097, ENST00000946282, ENST00000946283, ENST00000946284, ENST00000946285
RefSeq mRNA: 3 — MANE Select: NM_001171
NM_001079528, NM_001171, NM_001351800
CCDS: CCDS10568, CCDS58430
Canonical transcript exons
ENST00000205557 — 31 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000670407 | 16182412 | 16182588 |
| ENSE00000670409 | 16182804 | 16182930 |
| ENSE00000670437 | 16221649 | 16221831 |
| ENSE00001293454 | 16177452 | 16177626 |
| ENSE00001318656 | 16178798 | 16178965 |
| ENSE00001639528 | 16162993 | 16163192 |
| ENSE00001851325 | 16223399 | 16223494 |
| ENSE00002649611 | 16149565 | 16150241 |
| ENSE00003477682 | 16150578 | 16150772 |
| ENSE00003489767 | 16219554 | 16219682 |
| ENSE00003498108 | 16219822 | 16219947 |
| ENSE00003501018 | 16198021 | 16198182 |
| ENSE00003506921 | 16208728 | 16208859 |
| ENSE00003510061 | 16173284 | 16173404 |
| ENSE00003531168 | 16187124 | 16187211 |
| ENSE00003537315 | 16212185 | 16212246 |
| ENSE00003555988 | 16190164 | 16190367 |
| ENSE00003562953 | 16159482 | 16159583 |
| ENSE00003585806 | 16165623 | 16165933 |
| ENSE00003592923 | 16188831 | 16188974 |
| ENSE00003602896 | 16175911 | 16175986 |
| ENSE00003603055 | 16202001 | 16202178 |
| ENSE00003618310 | 16192830 | 16192922 |
| ENSE00003627359 | 16203410 | 16203613 |
| ENSE00003629160 | 16154873 | 16155031 |
| ENSE00003632719 | 16157663 | 16157809 |
| ENSE00003639087 | 16154628 | 16154794 |
| ENSE00003662846 | 16184959 | 16185034 |
| ENSE00003669940 | 16214324 | 16214449 |
| ENSE00003675149 | 16169646 | 16169853 |
| ENSE00003675165 | 16161438 | 16161564 |
Expression profiles
Bgee: expression breadth ubiquitous, 136 present calls, max score 96.89.
Top tissues by expression
138 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| right lobe of liver | UBERON:0001114 | 96.89 | gold quality |
| liver | UBERON:0002107 | 96.47 | gold quality |
| duodenum | UBERON:0002114 | 90.91 | gold quality |
| adult mammalian kidney | UBERON:0000082 | 89.68 | gold quality |
| body of pancreas | UBERON:0001150 | 87.37 | gold quality |
| kidney | UBERON:0002113 | 86.55 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 85.19 | gold quality |
| cortex of kidney | UBERON:0001225 | 82.67 | gold quality |
| pancreas | UBERON:0001264 | 80.68 | gold quality |
| upper lobe of left lung | UBERON:0008952 | 79.25 | gold quality |
| metanephros cortex | UBERON:0010533 | 79.22 | gold quality |
| body of stomach | UBERON:0001161 | 79.11 | gold quality |
| lung | UBERON:0002048 | 78.66 | gold quality |
| right lung | UBERON:0002167 | 78.49 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 78.08 | gold quality |
| stomach | UBERON:0000945 | 77.83 | gold quality |
| small intestine | UBERON:0002108 | 77.80 | gold quality |
| transverse colon | UBERON:0001157 | 77.41 | gold quality |
| small intestine Peyer’s patch | UBERON:0003454 | 77.31 | gold quality |
| rectum | UBERON:0001052 | 77.11 | gold quality |
| monocyte | CL:0000576 | 76.86 | gold quality |
| leukocyte | CL:0000738 | 76.80 | gold quality |
| olfactory segment of nasal mucosa | UBERON:0005386 | 76.78 | gold quality |
| right lobe of thyroid gland | UBERON:0001119 | 76.67 | gold quality |
| right adrenal gland | UBERON:0001233 | 76.47 | gold quality |
| thyroid gland | UBERON:0002046 | 76.11 | gold quality |
| left lobe of thyroid gland | UBERON:0001120 | 75.84 | gold quality |
| fundus of stomach | UBERON:0001160 | 75.80 | gold quality |
| gall bladder | UBERON:0002110 | 75.74 | gold quality |
| right uterine tube | UBERON:0001302 | 75.31 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 8.14 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): HNF4A, ID4, NFE2, NR1I3, PLAG1, PLAGL1, SOX2, SP1
miRNA regulators (miRDB)
35 targeting ABCC6, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4803 | 99.98 | 71.99 | 3117 |
| HSA-MIR-137-3P | 99.87 | 74.74 | 2401 |
| HSA-MIR-4447 | 99.85 | 67.81 | 2900 |
| HSA-MIR-576-5P | 99.84 | 70.46 | 2582 |
| HSA-MIR-548AG | 99.77 | 69.25 | 1492 |
| HSA-MIR-548AI | 99.69 | 69.24 | 1494 |
| HSA-MIR-548BA | 99.69 | 69.14 | 1514 |
| HSA-MIR-570-5P | 99.69 | 69.24 | 1494 |
| HSA-MIR-5700 | 99.64 | 69.88 | 2280 |
| HSA-MIR-567 | 99.63 | 68.57 | 1219 |
| HSA-MIR-4472 | 99.56 | 66.08 | 1478 |
| HSA-MIR-199A-5P | 99.51 | 69.71 | 1107 |
| HSA-MIR-199B-5P | 99.51 | 69.74 | 1098 |
| HSA-MIR-1275 | 99.47 | 67.90 | 2749 |
| HSA-MIR-3614-5P | 99.30 | 65.25 | 837 |
| HSA-MIR-625-5P | 99.02 | 68.64 | 2031 |
| HSA-MIR-181A-2-3P | 98.91 | 67.60 | 1168 |
| HSA-MIR-887-5P | 98.82 | 65.90 | 1347 |
| HSA-MIR-5006-5P | 98.79 | 66.92 | 1246 |
| HSA-MIR-603 | 98.58 | 68.28 | 1603 |
| HSA-MIR-6509-3P | 98.32 | 67.33 | 1343 |
| HSA-MIR-5088-3P | 98.29 | 66.63 | 1310 |
| HSA-MIR-5691 | 98.23 | 67.02 | 1335 |
| HSA-MIR-6805-3P | 98.23 | 67.02 | 1334 |
| HSA-MIR-5007-5P | 97.95 | 64.71 | 614 |
| HSA-MIR-4665-5P | 97.91 | 67.69 | 1536 |
| HSA-MIR-676-3P | 97.86 | 65.70 | 668 |
| HSA-MIR-30C-1-3P | 97.80 | 66.36 | 1499 |
| HSA-MIR-30C-2-3P | 97.80 | 66.45 | 1499 |
| HSA-MIR-6788-5P | 97.80 | 66.41 | 1532 |
Literature-anchored findings (GeneRIF, showing 40)
- point mutations in Pseudoxanthoma elasticum (PMID:11439001)
- mutations cause pseudoxanthoma elasticum (PMID:11536079)
- Loss of ATP-dependent transport activity in pseudoxanthoma elasticum-associated mutants of human ABCC6 (MRP6). (PMID:11880368)
- Presence of the R1141X mutation in the ABCC6 gene is associated with a sharply increased risk of premature coronary artery disease (PMID:12176944)
- We suggest that the severity of the Pseudoxanthoma elasticum phenotype is not directly correlated with the level of ABCC6/MRP6 activity. (PMID:12673275)
- A specific founder effect for the R1141X mutation exists in Dutch patients with PXE (pseudoxanthoma elasticum). (PMID:12714611)
- Using linkage analysis and mutation detection techniques, mutations in the ABCC6 gene were recently implicated in the etiology of pseudoxanthoma elasticum. (PMID:12850230)
- Asn15, which is located in the extracellular N-terminal region of human ABCC6, is the only N-glycosylation site in this protein. (PMID:12901863)
- Twenty-three different mutations were identified, among which 11 were new, in Italian patients with pseudoxanthoma elasticum (PMID:15459974)
- first report of missense mutation identification in the ABCC6 gene in Japanese pseudoxanthoma elasticum patients. (PMID:15645653)
- ABCC6 gene mutations is associated with German pseudoxanthoma elasticum patients (PMID:15723264)
- there is a DNA methylation-dependent activator sequence in the ABCC6 promoter (PMID:15760889)
- The widespread tissue distribution of ABCC6 suggests that ABCC6 fulfills multiple functions in different tissues. (PMID:15889270)
- ABCC6 mutations may have roles in Pseudoxanthoma elasticum (PMID:15894595)
- mutations in ABCC6 may have a role in pseudoxanthoma elasticum (PMID:16086317)
- alterations in ABCC6 are not a genetic risk factor for abdominal aortic aneurysm (PMID:16127278)
- Human ABCC6 displays tissue-specific gene expression, which can be modulated by proinflammatory cytokines. (PMID:16374464)
- Finds 16 PXE causing mutations and 11 neutral polymorphisms or sequence variations in particular ABCC6 exons of German patients and their relatives. (PMID:16392638)
- ABCC6 deficiency in Pseudoxanthoma elasticum (PXE) patients induces a persistent imbalance in circulating metabolite(s), which may impair the synthetic abilities of normal elastoblasts or specifically alter elastic fiber assembly. (PMID:16543900)
- 10 novel mutations within the ABCC6 gene are associated with pseudoxanthoma elasticum. (PMID:16835894)
- This suggests ABCC6 gene expression and the first identification of a transcription factor which is relevant to regulation of ABCC6 level in tissues and in some PXE patients. (PMID:17045963)
- heterozygote carriers had changes in dermal elastic fibre organization, morphology & labelling midway between those seen in pseudoxanthoma elasticum & normal skin; having a single mutation in the ABCC6 gene seems enough to modify dermal elastic fibres (PMID:17309461)
- ABCC6 mutations have a role in the pathogenesis of pseudoxanthoma elasticum (PMID:17617515)
- The mechanism underlying retinal dysfunction is unknown but may result from metabolic disturbance leading to retinal toxicity with a possible role of modifying genetic or environmental factors rather than specific ABCC6 mutations. (PMID:17724214)
- ABCC6 genomic rearrangements may have a role in pseudoxanthoma elasticum in French patients (PMID:17823974)
- This study shows elastic fibers like in the lesional skin of patients with a variety of inflammatory skin diseases in the absence of clinical evidence of pseudoxanthoma elasticum; and some of these patients harbor changes in ABCC6. (PMID:17880583)
- Compound heterozygosity for a novel and a recurrent ABCC6 gene mutation in an Italian family with Pseudoxanthoma elasticum. (PMID:18029147)
- ABCC6 is the most important, and probably only, causative gene of pseudoxanthoma elasticum(PXE). In total, 188 different ABCC6 mutations have now been reported in PXE in the literature. (PMID:18253096)
- ABCC6 is unlikely to be a modifier gene for familial Mediterranean fever severity. (PMID:18305351)
- study to illustrate phenotypic overlap consisting of usual, but limited, or atypical manifestations of PXE between heterozygous carriers of single ABCC6 mutation & patients diagnosed with PXE, carriers of homozygous or compound heterozygous mutations (PMID:18347285)
- Expression and localization MRP6 were significantly higher in hepatoid than in control adenocarcinoma (PMID:18439156)
- Study demonstrates that partial duplication of PKD1 and ABCC6 has many consequences: pseudogenes give rise to new transcripts and mediate gene conversion, which results in disease-causing mutations and also serves as a reservoir for sequence variation. (PMID:18791038)
- analysis of GGCX and ABCC6 mutations in a family with pseudoxanthoma elasticum-like phenotypes [case report] (PMID:18800149)
- identified ABCC6 as a target gene for transcriptional induction by PLAG1 and PLAGL1, transcription factors from the PLAG family of cell cycle progression-related DNA-binding proteins (PMID:18850323)
- These data provide a genetic proof of the importance of these domain-domain interactions in the ABCC6 transporter. (PMID:19133228)
- Very recently, the ABCC6 gene on chromosome 16p13.1 was found to be associated with the disease. (PMID:19298904)
- Delineation of the ABCC6 mutation profile in South African PXE patients will be used as a guide for molecular genetic testing in a clinical setting and for genetic counselling. (PMID:19339160)
- novel sequence determinants of liver-specific transcription of the ABCC6 gene with direct relevance for at least some pseudoxanthoma elasticum patients were identified. (PMID:19341707)
- Studies show that individuals homozygous for the c.3775delT mutation in the ABCC6 gene can have a highly variable phenotype. (PMID:19904211)
- The R1141X loss-of-function mutation of the ABCC6 gene is a strong genetic risk factor for coronary artery disease. (PMID:19929409)
Cross-species orthologs
14 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | abcc13 | ENSDARG00000062519 |
| mus_musculus | Abcc6 | ENSMUSG00000030834 |
| rattus_norvegicus | Abcc6 | ENSRNOG00000028781 |
| drosophila_melanogaster | l(2)03659 | FBGN0010549 |
| drosophila_melanogaster | CG7627 | FBGN0032026 |
| drosophila_melanogaster | MRP | FBGN0032456 |
| drosophila_melanogaster | CG9270 | FBGN0032908 |
| drosophila_melanogaster | CG10505 | FBGN0034612 |
| drosophila_melanogaster | Mrp5 | FBGN0038740 |
| drosophila_melanogaster | rdog | FBGN0039644 |
| drosophila_melanogaster | CG11898 | FBGN0039645 |
| drosophila_melanogaster | CG31792 | FBGN0051792 |
| drosophila_melanogaster | Mrp4 | FBGN0263316 |
| caenorhabditis_elegans | WBGENE00000477 |
Paralogs (11): CFTR (ENSG00000001626), ABCC8 (ENSG00000006071), ABCC2 (ENSG00000023839), ABCC9 (ENSG00000069431), ABCC1 (ENSG00000103222), ABCC3 (ENSG00000108846), ABCC5 (ENSG00000114770), ABCC11 (ENSG00000121270), ABCC10 (ENSG00000124574), ABCC4 (ENSG00000125257), ABCC12 (ENSG00000140798)
Protein
Protein identifiers
ATP-binding cassette sub-family C member 6 — O95255 (reviewed: O95255)
Alternative names: Anthracycline resistance-associated protein, Multi-specific organic anion transporter E, Multidrug resistance-associated protein 6
All UniProt accessions (4): O95255, A0A804HJ04, A0A8C8Q0G8, I3L1Z6
UniProt curated annotations — full annotation on UniProt →
Function. ATP-dependent transporter of the ATP-binding cassette (ABC) family that actively extrudes physiological compounds, and xenobiotics from cells. Mediates ATP-dependent transport of glutathione conjugates such as leukotriene-c4 (LTC4) and N-ethylmaleimide S-glutathione (NEM-GS) (in vitro), and an anionic cyclopentapeptide endothelin antagonist, BQ-123. May contribute to regulate the transport of organic compounds in testes across the blood-testis-barrier. Does not appear to actively transport drugs outside the cell. Confers low levels of cellular resistance to etoposide, teniposide, anthracyclines and cisplatin. Mediates the release of nucleoside triphosphates, predominantly ATP, into the circulation, where it is rapidly converted into AMP and the mineralization inhibitor inorganic pyrophosphate (PPi) by the ecto-enzyme ectonucleotide pyrophosphatase phosphodiesterase 1 (ENPP1), therefore playing a role in PPi homeostasis. Inhibits TNF-mediated apoptosis through blocking one or more caspases.
Subcellular location. Basal cell membrane Basolateral cell membrane Endoplasmic reticulum membrane.
Tissue specificity. Expressed in kidney and liver. Very low expression in other tissues. In testis, localized to peritubular myoid cells, Leydig cells, along the basal membrane of Sertoli cells and moderately in the adluminal compartment of the seminiferous tubules.
Post-translational modifications. Glycosylated.
Disease relevance. Pseudoxanthoma elasticum (PXE) [MIM:264800] A multisystem disorder characterized by accumulation of mineralized and fragmented elastic fibers in the skin, vascular walls, and Burch membrane in the eye. Clinically, patients exhibit characteristic lesions of the posterior segment of the eye including peau d’orange, angioid streaks, and choroidal neovascularizations, of the skin including soft, ivory colored papules in a reticular pattern that predominantly affect the neck and large flexor surfaces, and of the cardiovascular system with peripheral and coronary arterial occlusive disease as well as gastrointestinal bleedings. The disease is caused by variants affecting the gene represented in this entry. Homozygous or compound heterozygous ABCC6 mutations have been found in the overwhelming majority of cases. Individuals carrying heterozygous mutations express limited manifestations of the pseudoxanthoma elasticum phenotype. Arterial calcification of infancy, generalized, 2 (GACI2) [MIM:614473] A severe autosomal recessive disorder characterized by calcification of the internal elastic lamina of muscular arteries and stenosis due to myointimal proliferation. The disorder is often fatal within the first 6 months of life because of myocardial ischemia resulting in refractory heart failure. The disease is caused by variants affecting the gene represented in this entry.
Activity regulation. LTC4 transport is completely inhibited by 1 mM orthovanadate.
Induction. Induced by HBV x antigen upon hepatitis B viral infection.
Miscellaneous. May function as a half transporter.
Similarity. Belongs to the ABC transporter superfamily. ABCC family. Conjugate transporter (TC 3.A.1.208) subfamily.
Isoforms (3)
| UniProt ID | Names | Canonical? |
|---|---|---|
| O95255-1 | 1 | yes |
| O95255-2 | 2, URG7 | |
| O95255-3 | 3, Delta19Delta24 |
RefSeq proteins (3): NP_001072996, NP_001162, NP_001338729 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR003439 | ABC_transporter-like_ATP-bd | Domain |
| IPR003593 | AAA+_ATPase | Domain |
| IPR005292 | MRP | Family |
| IPR011527 | ABC1_TM_dom | Domain |
| IPR017871 | ABC_transporter-like_CS | Conserved_site |
| IPR027417 | P-loop_NTPase | Homologous_superfamily |
| IPR036640 | ABC1_TM_sf | Homologous_superfamily |
| IPR050173 | ABC_transporter_C-like | Family |
| IPR056227 | TMD0_ABC | Domain |
Pfam: PF00005, PF00664, PF24357
Enzyme classification (BRENDA):
- EC 7.6.2.3 — ABC-type glutathione-S-conjugate transporter (BRENDA: 8 organisms, 145 substrates, 63 inhibitors, 16 Km, 0 kcat entries)
Substrate kinetics (BRENDA)
7 substrates with measured Km, best-characterized 7. Km ranges are aggregated across organisms/conditions.
| Substrate | Km (mM) | Measurements |
|---|---|---|
| ATP | 0.0865–0.91 | 5 |
| MONOMETHYLARSONOUS ACID DIGLUTATHIONE[SIDE 1] | 0.023–0.033 | 4 |
| S-(2,4-DINITROPHENYL)GLUTATHIONE[SIDE 1] | 0.0141–0.032 | 2 |
| S-(LEUKOTRIENE C4)GLUTATHIONE[SIDE 1] | 0.0001 | 2 |
| 4-(GLUTATHIONE-S-YL)-QUINOLINE-1-OXIDE[SIDE 1] | 0.0095 | 1 |
| ARSENIC TRIGLUTATHIONE[SIDE 1] | 0.0003 | 1 |
| S-GLUTATHIONE[SIDE 1] | 12 | 1 |
Catalyzed reactions (Rhea), 2 shown:
- an S-substituted glutathione(in) + ATP + H2O = an S-substituted glutathione(out) + ADP + phosphate + H(+) (RHEA:19121)
- leukotriene C4(in) + ATP + H2O = leukotriene C4(out) + ADP + phosphate + H(+) (RHEA:38963)
UniProt features (228 total): sequence variant 122, strand 26, helix 22, topological domain 18, transmembrane region 17, sequence conflict 6, domain 4, splice variant 4, turn 2, binding site 2, chain 1, region of interest 1, compositionally biased region 1, modified residue 1, glycosylation site 1
Structure
Experimental structures (PDB)
4 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 6BZS | X-RAY DIFFRACTION | 2.3 |
| 6BZR | X-RAY DIFFRACTION | 2.8 |
| 6P7F | X-RAY DIFFRACTION | 2.85 |
| 6NLO | X-RAY DIFFRACTION | 2.85 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-O95255-F1 | 81.32 | 0.29 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Ligand- & substrate-binding residues (2): 663–670; 1299–1306
Post-translational modifications (1): 1286
Glycosylation sites (1): 15
Function
Pathways and Gene Ontology
Reactome pathways
6 pathways
| ID | Pathway |
|---|---|
| R-HSA-382556 | ABC-family protein mediated transport |
| R-HSA-5690338 | Defective ABCC6 causes PXE |
| R-HSA-1643685 | Disease |
| R-HSA-382551 | Transport of small molecules |
| R-HSA-5619084 | ABC transporter disorders |
| R-HSA-5619115 | Disorders of transmembrane transporters |
MSigDB gene sets: 412 (showing top):
GSE45365_HEALTHY_VS_MCMV_INFECTION_CD8_TCELL_IFNAR_KO_UP, GSE18804_SPLEEN_MACROPHAGE_VS_BRAIN_TUMORAL_MACROPHAGE_DN, GNF2_GSTM1, MODULE_418, GNF2_HPN, GOBP_INORGANIC_ANION_TRANSPORT, GOBP_ORGANOPHOSPHATE_METABOLIC_PROCESS, GOBP_NUCLEOTIDE_TRANSPORT, GOBP_CARBOHYDRATE_DERIVATIVE_METABOLIC_PROCESS, GOBP_ORGANIC_ACID_TRANSPORT, KEGG_ABC_TRANSPORTERS, GOBP_RESPONSE_TO_METAL_ION, PATIL_LIVER_CANCER, GOBP_NUCLEOBASE_CONTAINING_SMALL_MOLECULE_METABOLIC_PROCESS, GOBP_ORGANOPHOSPHATE_ESTER_TRANSPORT
GO Biological Process (16): visual perception (GO:0007601), response to xenobiotic stimulus (GO:0009410), gene expression (GO:0010467), ATP transport (GO:0015867), inorganic diphosphate transport (GO:0030505), intracellular phosphate ion homeostasis (GO:0030643), response to magnesium ion (GO:0032026), ATP metabolic process (GO:0046034), phosphate ion homeostasis (GO:0055062), calcium ion homeostasis (GO:0055074), transmembrane transport (GO:0055085), leukotriene transport (GO:0071716), inhibition of non-skeletal tissue mineralization (GO:0140928), response to sodium phosphate (GO:1904383), carboxylic acid transport (GO:0046942), monoatomic anion transmembrane transport (GO:0098656)
GO Molecular Function (8): ATP binding (GO:0005524), ABC-type glutathione S-conjugate transporter activity (GO:0015431), ATP hydrolysis activity (GO:0016887), ATPase-coupled transmembrane transporter activity (GO:0042626), obsolete ATPase-coupled inorganic anion transmembrane transporter activity (GO:0043225), ABC-type transporter activity (GO:0140359), nucleotide binding (GO:0000166), transmembrane transporter activity (GO:0022857)
GO Cellular Component (8): extracellular region (GO:0005576), nucleoplasm (GO:0005654), endoplasmic reticulum membrane (GO:0005789), plasma membrane (GO:0005886), basal plasma membrane (GO:0009925), basolateral plasma membrane (GO:0016323), endoplasmic reticulum (GO:0005783), membrane (GO:0016020)
Reactome top-level categories
Rollup of top-4 pathways:
| Category | Pathways |
|---|---|
| Transport of small molecules | 1 |
| ABC transporter disorders | 1 |
| Disorders of transmembrane transporters | 1 |
| Disease | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 3 |
| inorganic ion homeostasis | 2 |
| ATP-dependent activity | 2 |
| plasma membrane region | 2 |
| sensory perception of light stimulus | 1 |
| response to chemical | 1 |
| macromolecule biosynthetic process | 1 |
| purine ribonucleotide transport | 1 |
| adenine nucleotide transport | 1 |
| inorganic anion transport | 1 |
| phosphate ion homeostasis | 1 |
| intracellular chemical homeostasis | 1 |
| response to metal ion | 1 |
| purine ribonucleotide metabolic process | 1 |
| purine ribonucleoside triphosphate metabolic process | 1 |
| monoatomic cation homeostasis | 1 |
| transport | 1 |
| cellular process | 1 |
| icosanoid transport | 1 |
| tissue homeostasis | 1 |
| response to salt | 1 |
| organic acid transport | 1 |
| monoatomic anion transport | 1 |
| monoatomic ion transmembrane transport | 1 |
| adenyl ribonucleotide binding | 1 |
| purine ribonucleoside triphosphate binding | 1 |
| ABC-type transporter activity | 1 |
| sulfur compound transmembrane transporter activity | 1 |
| ribonucleoside triphosphate phosphatase activity | 1 |
| primary active transmembrane transporter activity | 1 |
| ATP hydrolysis activity | 1 |
| ATPase-coupled transmembrane transporter activity | 1 |
| nucleoside phosphate binding | 1 |
| heterocyclic compound binding | 1 |
| transporter activity | 1 |
| transmembrane transport | 1 |
| nuclear lumen | 1 |
| organelle membrane | 1 |
| nuclear outer membrane-endoplasmic reticulum membrane network | 1 |
| endoplasmic reticulum subcompartment | 1 |
Protein interactions and networks
STRING
0 interactions, top by confidence (×1000):
IntAct
132 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| ABCC6 | ZMYND11 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| MAP1LC3B | ABCC6 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| ABCC6 | MAP1LC3A | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| ABCC6 | RADIL | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| ABCC6 | PICK1 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| ABCC6 | PARD3B | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| ABCC6 | ARHGAP21 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| ABCC6 | MAST2 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| ABCC6 | PDZD7 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| ABCC6 | LIN7C | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| ABCC6 | HTRA1 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| ABCC6 | WHRN | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| ABCC6 | APBA3 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| ABCC6 | LNX1 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| ABCC6 | DLG3 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| ABCC6 | MPP2 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| TIAM2 | ABCC6 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| ABCC6 | MAGI2 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| ABCC6 | LIMK2 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| ABCC6 | ARHGEF11 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| ABCC6 | PATJ | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| ABCC6 | MAGI1 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| ABCC6 | PTPN13 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| ABCC6 | GRIP1 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| ABCC6 | CASK | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| ABCC6 | CARD11 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| ABCC6 | TJP2 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| ABCC6 | APBA2 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
BioGRID (54): GCN1L1 (Affinity Capture-MS), CLTC (Affinity Capture-MS), A2M (Affinity Capture-MS), ROCK2 (Affinity Capture-MS), UGGT1 (Affinity Capture-MS), EPRS (Affinity Capture-MS), COPA (Affinity Capture-MS), SEC31A (Affinity Capture-MS), PSMD1 (Affinity Capture-MS), IPO5 (Affinity Capture-MS), COPB1 (Affinity Capture-MS), HSPA5 (Affinity Capture-MS), EZR (Affinity Capture-MS), HSD17B4 (Affinity Capture-MS), HADHA (Affinity Capture-MS)
ESM2 similar proteins: A0A8C2M425, A1L1J9, B0BNG2, O60725, O75908, O77759, O88269, O88908, O95255, Q0P4J9, Q290J8, Q3T1L5, Q3TAE8, Q3UV71, Q499P8, Q49LS7, Q4R4E1, Q4VV71, Q5F380, Q5KR61, Q5R8F6, Q5RAH7, Q5RKL5, Q6AZ83, Q6NVG1, Q7SXZ1, Q7T310, Q7TPN3, Q7TQM4, Q86VD9, Q8AVI9, Q8BTP0, Q8C0T0, Q8C3X8, Q8CI59, Q8IUR5, Q8K2A8, Q8L638, Q8R1J1, Q8R4P9
Diamond homologs: A0A0D1CZ63, A0A0U1LQE1, A0A1U8QTJ9, A2XCD4, A7KVC2, B2RX12, E9Q236, F1M3J4, F9X9V4, G4N2B5, J9VQH1, O15438, O15439, O15440, O31708, O35379, O60706, O70127, O88269, O88563, O95255, P0CE69, P14772, P16875, P16877, P21439, P21440, P32386, P33527, P38735, P39109, P53049, P70170, P82451, P91660, P9WEL8, Q07QX6, Q08201, Q09427, Q0VQP5
SIGNOR signaling
3 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| PLAG1 | “up-regulates quantity by expression” | ABCC6 | “transcriptional regulation” |
| PLAGL1 | “up-regulates quantity by expression” | ABCC6 | “transcriptional regulation” |
| SOX2 | “up-regulates quantity by expression” | ABCC6 | “transcriptional regulation” |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 88 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Ras activation upon Ca2+ influx through NMDA receptor | 5 | 48.4× | 3e-06 |
| Unblocking of NMDA receptors, glutamate binding and activation | 5 | 46.1× | 3e-06 |
| Negative regulation of NMDA receptor-mediated neuronal transmission | 5 | 46.1× | 3e-06 |
| Assembly and cell surface presentation of NMDA receptors | 10 | 43.0× | 2e-12 |
| Dopamine Neurotransmitter Release Cycle | 5 | 42.1× | 4e-06 |
| Long-term potentiation | 5 | 40.3× | 4e-06 |
| Neurexins and neuroligins | 11 | 36.7× | 1e-12 |
| Protein-protein interactions at synapses | 7 | 31.5× | 2e-07 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| establishment or maintenance of epithelial cell apical/basal polarity | 11 | 77.0× | 4e-16 |
| protein localization to synapse | 6 | 55.4× | 1e-07 |
| receptor clustering | 7 | 52.6× | 1e-08 |
| regulation of postsynaptic membrane neurotransmitter receptor levels | 7 | 41.8× | 5e-08 |
| cell-cell adhesion | 10 | 12.2× | 8e-07 |
| protein-containing complex assembly | 8 | 11.0× | 4e-05 |
| regulation of small GTPase mediated signal transduction | 5 | 8.7× | 6e-03 |
| chemical synaptic transmission | 7 | 6.5× | 3e-03 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
1873 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 160 |
| Likely pathogenic | 128 |
| Uncertain significance | 759 |
| Likely benign | 577 |
| Benign | 71 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1068874 | NC_000016.9:g.(?16248465)(16259810_?)del | Pathogenic |
| 1179156 | GRCh37/hg19 16p13.11(chr16:16248464-16259810) | Pathogenic |
| 1363672 | NC_000016.9:g.(?16243990)(16292059_?)del | Pathogenic |
| 1367116 | NC_000016.9:g.(?16291858)(16292059_?)del | Pathogenic |
| 1390356 | NM_001171.6(ABCC6):c.3497del (p.Val1166fs) | Pathogenic |
| 1391272 | NM_001171.6(ABCC6):c.2889C>A (p.Cys963Ter) | Pathogenic |
| 1391421 | NM_001171.6(ABCC6):c.2407del (p.Gln803fs) | Pathogenic |
| 1413432 | NM_001171.6(ABCC6):c.2536dup (p.Ala846fs) | Pathogenic |
| 1430179 | NM_001171.6(ABCC6):c.4063_4080del (p.Ser1355_Leu1360del) | Pathogenic |
| 1453742 | NM_001171.6(ABCC6):c.2781C>A (p.Tyr927Ter) | Pathogenic |
| 1456657 | NM_001171.6(ABCC6):c.2698dup (p.Thr900fs) | Pathogenic |
| 1458858 | NM_001171.6(ABCC6):c.3315T>G (p.Tyr1105Ter) | Pathogenic |
| 1701283 | NM_001171.6(ABCC6):c.3634-1G>T | Pathogenic |
| 1802149 | NM_001171.6(ABCC6):c.2738_2739del (p.Pro913fs) | Pathogenic |
| 1981514 | NM_001171.6(ABCC6):c.1791del (p.Phe598fs) | Pathogenic |
| 2022821 | NM_001171.6(ABCC6):c.3913_3931dup (p.Gly1311fs) | Pathogenic |
| 208558 | NM_001171.6(ABCC6):c.3306+1del | Pathogenic |
| 2099772 | NM_001171.6(ABCC6):c.4093del (p.Glu1365fs) | Pathogenic |
| 2116451 | NM_001171.6(ABCC6):c.1786del (p.Val596fs) | Pathogenic |
| 2120735 | NM_001171.6(ABCC6):c.3077G>A (p.Trp1026Ter) | Pathogenic |
| 2135683 | NM_001171.6(ABCC6):c.3335dup (p.Arg1113fs) | Pathogenic |
| 2186680 | NM_001171.6(ABCC6):c.3256_3257dup (p.Ala1087fs) | Pathogenic |
| 2423918 | NC_000016.9:g.(?16263483)(16292059_?)del | Pathogenic |
| 2423919 | NC_000016.9:g.(?16259460)(16292059_?)del | Pathogenic |
| 2572576 | NM_001171.6(ABCC6):c.2035G>T (p.Glu679Ter) | Pathogenic |
| 2578774 | GRCh37/hg19 16p13.11(chr16:16248485-16259790)x1 | Pathogenic |
| 2580302 | GRCh37/hg19 16p13.11(chr16:15475455-16308356)x1 | Pathogenic |
| 2628399 | NM_001171.6(ABCC6):c.982_988delinsTTCCCC (p.Val328fs) | Pathogenic |
| 2698001 | NM_001171.6(ABCC6):c.2044_2045del (p.Lys682fs) | Pathogenic |
| 2764901 | NM_001171.6(ABCC6):c.1755del (p.Phe586fs) | Pathogenic |
SpliceAI
5151 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 16:16150771:CG:C | acceptor_gain | 1.0000 |
| 16:16154622:CCATA:C | donor_loss | 1.0000 |
| 16:16154623:CATA:C | donor_loss | 1.0000 |
| 16:16154626:A:AC | donor_gain | 1.0000 |
| 16:16154627:C:CC | donor_gain | 1.0000 |
| 16:16154790:GGGTC:G | acceptor_gain | 1.0000 |
| 16:16154791:GGTC:G | acceptor_gain | 1.0000 |
| 16:16154792:GTC:G | acceptor_gain | 1.0000 |
| 16:16154793:TC:T | acceptor_gain | 1.0000 |
| 16:16154794:CC:C | acceptor_gain | 1.0000 |
| 16:16154794:CCTG:C | acceptor_loss | 1.0000 |
| 16:16154795:C:CA | acceptor_loss | 1.0000 |
| 16:16154795:C:CC | acceptor_gain | 1.0000 |
| 16:16154796:T:C | acceptor_loss | 1.0000 |
| 16:16154799:C:CT | acceptor_gain | 1.0000 |
| 16:16157659:TCA:T | donor_loss | 1.0000 |
| 16:16157660:CACCT:C | donor_loss | 1.0000 |
| 16:16157810:C:CC | acceptor_gain | 1.0000 |
| 16:16159483:T:TA | donor_gain | 1.0000 |
| 16:16173280:TTACC:T | donor_loss | 1.0000 |
| 16:16173281:TACC:T | donor_loss | 1.0000 |
| 16:16173282:AC:A | donor_gain | 1.0000 |
| 16:16173283:C:CG | donor_loss | 1.0000 |
| 16:16173283:CC:C | donor_gain | 1.0000 |
| 16:16173283:CCCTG:C | donor_gain | 1.0000 |
| 16:16173303:T:TA | donor_gain | 1.0000 |
| 16:16173308:T:A | donor_gain | 1.0000 |
| 16:16173403:ACCT:A | acceptor_loss | 1.0000 |
| 16:16173405:C:CC | acceptor_gain | 1.0000 |
| 16:16173406:T:A | acceptor_loss | 1.0000 |
AlphaMissense
9670 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 16:16188906:A:C | F568L | 0.984 |
| 16:16188906:A:T | F568L | 0.984 |
| 16:16188908:A:G | F568L | 0.984 |
| 16:16221735:A:G | W45R | 0.983 |
| 16:16221735:A:T | W45R | 0.983 |
| 16:16198041:A:G | C440R | 0.976 |
| 16:16182892:A:T | V661D | 0.973 |
| 16:16198068:A:G | W431R | 0.972 |
| 16:16198068:A:T | W431R | 0.972 |
| 16:16219680:G:C | S116R | 0.972 |
| 16:16219680:G:T | S116R | 0.972 |
| 16:16219682:T:G | S116R | 0.972 |
| 16:16161563:A:G | W1170R | 0.968 |
| 16:16161563:A:T | W1170R | 0.968 |
| 16:16212195:A:G | W218R | 0.967 |
| 16:16212195:A:T | W218R | 0.967 |
| 16:16187211:C:G | A594P | 0.966 |
| 16:16212199:G:C | F216L | 0.965 |
| 16:16212199:G:T | F216L | 0.965 |
| 16:16212201:A:G | F216L | 0.965 |
| 16:16165879:G:A | S1017F | 0.964 |
| 16:16177622:C:G | R807P | 0.964 |
| 16:16178922:G:T | A764D | 0.964 |
| 16:16177616:A:G | L809P | 0.963 |
| 16:16178925:A:G | L763P | 0.962 |
| 16:16198039:G:C | C440W | 0.962 |
| 16:16198090:G:C | S423R | 0.962 |
| 16:16198090:G:T | S423R | 0.962 |
| 16:16198092:T:G | S423R | 0.962 |
| 16:16188907:A:C | F568C | 0.960 |
dbSNP variants (sampled 300 via entrez): RS1000026562 (16:16157013 G>A), RS1000029685 (16:16223932 C>T), RS1000056295 (16:16156693 G>A), RS1000085426 (16:16216307 G>A), RS1000116891 (16:16216647 G>C), RS1000118799 (16:16193708 C>T), RS1000130250 (16:16179549 A>G), RS1000184278 (16:16190384 A>G), RS1000211396 (16:16184647 C>T), RS1000211989 (16:16173846 T>A), RS1000236988 (16:16162279 C>T), RS1000295692 (16:16210462 G>A), RS1000378543 (16:16195063 G>A), RS1000388461 (16:16167879 T>C), RS1000442345 (16:16151791 G>T)
Disease associations
OMIM: gene MIM:603234 | disease phenotypes: MIM:177850, MIM:264800, MIM:614473, MIM:256300, MIM:109730, MIM:192200
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| inherited pseudoxanthoma elasticum | Definitive | Semidominant |
| autosomal recessive inherited pseudoxanthoma elasticum | Definitive | Autosomal recessive |
| arterial calcification, generalized, of infancy, 2 | Definitive | Autosomal recessive |
| arterial calcification of infancy | Supportive | Autosomal dominant |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| inherited pseudoxanthoma elasticum | Definitive | SD |
Mondo (13): pseudoxanthoma elasticum, forme fruste (MONDO:0008333), autosomal recessive inherited pseudoxanthoma elasticum (MONDO:0009925), arterial calcification, generalized, of infancy, 2 (MONDO:0013768), pseudoxanthoma elasticum (inherited or acquired) (MONDO:0024308), inherited retinal dystrophy (MONDO:0019118), optic atrophy (MONDO:0003608), congenital nephrotic syndrome, Finnish type (MONDO:0009732), retinal disorder (MONDO:0005283), aortic valve disease 1 (MONDO:0024523), varicose disease (MONDO:0008638), cutis laxa (MONDO:0016175), inherited pseudoxanthoma elasticum (MONDO:0100091), arterial calcification of infancy (MONDO:0018870)
Orphanet (5): Generalized arterial calcification of infancy (Orphanet:51608), Pseudoxanthoma elasticum (Orphanet:758), OBSOLETE: Inherited retinal disorder (Orphanet:71862), Congenital nephrotic syndrome, Finnish type (Orphanet:839), Cutis laxa (Orphanet:209)
HPO phenotypes
136 total (30 of 136 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000121 | Nephrocalcinosis |
| HP:0000218 | High palate |
| HP:0000365 | Hearing impairment |
| HP:0000381 | Stapes ankylosis |
| HP:0000405 | Conductive hearing impairment |
| HP:0000407 | Sensorineural hearing impairment |
| HP:0000410 | Mixed hearing impairment |
| HP:0000474 | Thickened nuchal skin fold |
| HP:0000488 | Retinopathy |
| HP:0000505 | Visual impairment |
| HP:0000545 | Myopia |
| HP:0000573 | Retinal hemorrhage |
| HP:0000592 | Blue sclerae |
| HP:0000608 | Macular degeneration |
| HP:0000630 | Abnormal retinal arterial/arteriolar morphology |
| HP:0000737 | Irritability |
| HP:0000765 | Abnormal thorax morphology |
| HP:0000766 | Abnormal sternum morphology |
| HP:0000822 | Hypertension |
| HP:0000951 | Abnormality of the skin |
| HP:0000961 | Cyanosis |
| HP:0000969 | Edema |
| HP:0000973 | Cutis laxa |
| HP:0000974 | Hyperextensible skin |
| HP:0000978 | Bruising susceptibility |
| HP:0001012 | Multiple lipomas |
| HP:0001065 | Striae distensae |
| HP:0001102 | Angioid streaks |
GWAS associations
5 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST003051_1 | Multiple myeloma (survival) | 7.000000e-09 |
| GCST010083_316 | Hemoglobin levels | 9.000000e-14 |
| GCST90002383_238 | Hematocrit | 6.000000e-14 |
| GCST90002384_357 | Hemoglobin | 3.000000e-15 |
| GCST90002403_669 | Red blood cell count | 7.000000e-17 |
EFO canonical traits (4, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0000638 | overall survival |
| EFO:0004509 | hemoglobin measurement |
| EFO:0004348 | hematocrit |
| EFO:0004305 | erythrocyte count |
MeSH disease descriptors (7)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D003483 | Cutis Laxa | C16.320.850.180; C17.300.230; C17.800.827.180 |
| D009896 | Optic Atrophy | C10.292.700.225; C11.640.451 |
| D011561 | Pseudoxanthoma Elasticum | C14.907.454.530; C15.378.463.515.530; C16.131.831.766; C16.320.850.750; C17.300.766; C17.800.804.766; C17.800.827.750 |
| D012164 | Retinal Diseases | C11.768 |
| D058499 | Retinal Dystrophies | C11.768.585.658 |
| D014648 | Varicose Veins | C14.907.927 |
| C537440 | Arterial calcification of infancy (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL2073661 (SINGLE PROTEIN)
PharmGKB: 1 entry (VIP=true, CPIC=false)
PharmGKB clinical annotations
1 annotations.
| Variant | Type | Level | Drugs | Phenotypes |
|---|---|---|---|---|
| rs2238472 | Toxicity | 3 | docetaxel;thalidomide | Prostatic Neoplasms |
PharmGKB variants
5 variants.
| Variant | Genes | Level | Score | #Clin annots | Drugs |
|---|---|---|---|---|---|
| rs2238472 | ABCC6 | 3 | 2.00 | 1 | docetaxel;thalidomide |
| rs8058694 | ABCC6 | 0.00 | 0 | ||
| rs12929610 | ABCC6 | 0.00 | 0 | ||
| rs12935089 | ABCC6 | 0.00 | 0 | ||
| rs4781732 | ABCC6 | 0.00 | 0 |
GtoPdb / IUPHAR curated pharmacology
(IUPHAR/BPS Guide to Pharmacology — expert-curated)
Target class: transporter — ABCC subfamily
CTD chemical–gene interactions
61 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Benzo(a)pyrene | affects methylation, decreases expression | 6 |
| Cyclosporine | decreases expression | 3 |
| Aflatoxin B1 | affects expression, decreases expression, increases methylation | 3 |
| Docetaxel | affects response to substance, affects expression, decreases response to substance | 2 |
| Acetaminophen | decreases expression | 2 |
| Benzbromarone | decreases reaction, decreases activity, affects transport | 2 |
| Indomethacin | decreases activity, affects transport, decreases reaction | 2 |
| Phenobarbital | decreases expression, increases expression | 2 |
| Tobacco Smoke Pollution | decreases expression | 2 |
| Valproic Acid | decreases expression, increases expression | 2 |
| methylmercuric chloride | decreases expression | 1 |
| methyleugenol | decreases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| propionaldehyde | decreases expression | 1 |
| bisphenol A | affects expression | 1 |
| fluorexon | affects transport | 1 |
| senecionine | decreases expression | 1 |
| senkirkine | decreases expression | 1 |
| heliotrine | decreases expression | 1 |
| trichostatin A | decreases expression | 1 |
| sodium arsenite | decreases expression | 1 |
| butyraldehyde | decreases expression | 1 |
| diallyl disulfide | decreases expression, increases expression | 1 |
| diallyl trisulfide | increases expression | 1 |
| N-ethylmaleimide-S-glutathione | affects transport, decreases reaction | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| calcein AM | affects transport, increases reaction | 1 |
| belinostat | decreases expression | 1 |
| bisphenol S | decreases methylation | 1 |
| Rosiglitazone | decreases expression | 1 |
ChEMBL screening assays
10 unique, capped per target: 9 functional, 1 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL2075388 | Functional | TP_TRANSPORTER: uptake in membrane vesicles from MRP6-expressing Sf9 cells | Loss of ATP-dependent transport activity in pseudoxanthoma elasticum-associated mutants of human ABCC6 (MRP6). — J Biol Chem |
| CHEMBL4423073 | Binding | Inhibition of ABCC6 (unknown origin) expressed in HEK293 cells assessed as increase in doxorubicin efflux at 100 uM after 30 mins by fluorescence assay | The P-glycoprotein inhibitor diltiazem-like 8-(4-chlorophenyl)-5-methyl-8-[(2Z)-pent-2-en-1-yloxy]-8H-[1,2,4]oxadiazolo[3,4-c][1,4]thiazin-3-one inhibits esterase activity and H3 histone acetylation. — Eur J Med Chem |
Cellosaurus cell lines
4 cell lines: 2 cancer cell line, 1 transformed cell line, 1 finite cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_B6A3 | C2BBe1 MRP6 KO | Cancer cell line | Male |
| CVCL_B6AK | HepaRG MRP6 KO | Cancer cell line | Female |
| CVCL_LN32 | HEK293/hABCC6 | Transformed cell line | Female |
| CVCL_Y109 | GM04994 | Finite cell line | Male |
Clinical trials (associated diseases)
229 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT01955135 | PHASE4 | COMPLETED | Anesthesia for Retinopathy of Prematurity |
| NCT01287702 | PHASE4 | UNKNOWN | Early Feeding Following Ligation of Acute Bleeding Varices |
| NCT01611324 | PHASE4 | COMPLETED | Painless Local Infiltration Anesthesia |
| NCT02010723 | PHASE4 | COMPLETED | Surgery Versus Sclerotherapy for Isolated Accessory Great Saphenous Vein Varicosis |
| NCT02054325 | PHASE4 | COMPLETED | Study Protocol Comparing Polidocanol Versus Hypertonic Glucose for Treatment of Reticular Veins |
| NCT02462720 | PHASE4 | COMPLETED | COMFORT: A Multicenter, Open-label, Randomized, Crossover Study |
| NCT02627846 | PHASE4 | COMPLETED | Laser Ablation Versus Mechanochemical Ablation Trial |
| NCT02657252 | PHASE4 | COMPLETED | Polidocanol Versus Glucose Treatment of Telangiectasia Trial |
| NCT02988063 | PHASE4 | WITHDRAWN | Effect of PEM Treatment of Superficial Axial and Tributary Vein Reflux on Improvement of Wound Healing in VLUs |
| NCT03416413 | PHASE4 | RECRUITING | Study of Foam Sclerotherapy Versus Ambulatory Phlebectomy |
| NCT05312970 | PHASE4 | TERMINATED | Varithena Versus Endothermal Ablation of the Great Saphenous Vein (VERITAS) |
| NCT05735639 | PHASE4 | RECRUITING | THRomboprophylaxis in Individuals Undergoing Superficial endoVEnous Treatment (THRIVE) |
| NCT05832580 | PHASE3 | RECRUITING | The Prevention of Systemic Ectopic Mineralization in Pseudoxanthoma Elasticum |
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Related Atlas pages
- Associated diseases: inherited pseudoxanthoma elasticum, autosomal recessive inherited pseudoxanthoma elasticum, arterial calcification of infancy, arterial calcification, generalized, of infancy, 2
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): aortic valve disease 1, arterial calcification of infancy, arterial calcification, generalized, of infancy, 2, autosomal recessive inherited pseudoxanthoma elasticum, congenital nephrotic syndrome, Finnish type, cutis laxa, inherited pseudoxanthoma elasticum, pseudoxanthoma elasticum (inherited or acquired), pseudoxanthoma elasticum, forme fruste, varicose disease