ABCC9

gene
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Also known as SUR2CMD1O

Summary

ABCC9 (ATP binding cassette subfamily C member 9, HGNC:60) is a protein-coding gene on chromosome 12p12.1, encoding ATP-binding cassette sub-family C member 9 (O60706). Subunit of ATP-sensitive potassium channels (KATP).

The protein encoded by this gene is a member of the superfamily of ATP-binding cassette (ABC) transporters. ABC proteins transport various molecules across extra- and intra-cellular membranes. ABC genes are divided into seven distinct subfamilies (ABC1, MDR/TAP, MRP, ALD, OABP, GCN20, White). This protein is a member of the MRP subfamily which is involved in multi-drug resistance. This protein is thought to form ATP-sensitive potassium channels in cardiac, skeletal, and vascular and non-vascular smooth muscle. Protein structure suggests a role as the drug-binding channel-modulating subunit of the extra-pancreatic ATP-sensitive potassium channels. Mutations in this gene are associated with cardiomyopathy dilated type 1O. Alternative splicing results in multiple transcript variants.

Source: NCBI Gene 10060 — RefSeq curated summary.

At a glance

  • Gene–disease (curated): hypertrichotic osteochondrodysplasia Cantu type (Definitive, ClinGen) — +7 more curated relationships
  • GWAS associations: 11
  • Clinical variants (ClinVar): 2,182 total — 65 pathogenic, 37 likely-pathogenic
  • Phenotypes (HPO): 125
  • Druggable target: yes — 5 molecules with ChEMBL bioactivity
  • MANE Select transcript: NM_020297

Identifiers

Gene identifiers

FieldValue
HGNC IDHGNC:60
Approved symbolABCC9
NameATP binding cassette subfamily C member 9
Location12p12.1
Locus typegene with protein product
StatusApproved
AliasesSUR2, CMD1O
Ensembl geneENSG00000069431
Ensembl biotypeprotein_coding
OMIM601439
Entrez10060

Gene structure

Transcript identifiers

Ensembl transcripts: 33 — 24 protein_coding, 5 retained_intron, 2 protein_coding_CDS_not_defined, 2 nonsense_mediated_decay

ENST00000261200, ENST00000261201, ENST00000326684, ENST00000538350, ENST00000544039, ENST00000621589, ENST00000636888, ENST00000682068, ENST00000682426, ENST00000682646, ENST00000682789, ENST00000682879, ENST00000683105, ENST00000683560, ENST00000683676, ENST00000683695, ENST00000683811, ENST00000684084, ENST00000684435, ENST00000684543, ENST00000879185, ENST00000879186, ENST00000879187, ENST00000879188, ENST00000879189, ENST00000879190, ENST00000879191, ENST00000879192, ENST00000879193, ENST00000944975, ENST00000944976, ENST00000944977, ENST00000944978

RefSeq mRNA: 4 — MANE Select: NM_020297 NM_001377273, NM_001377274, NM_005691, NM_020297

CCDS: CCDS8693, CCDS8694

Canonical transcript exons

ENST00000261200 — 40 exons

ExonStartEnd
ENSE000007264692181204921812157
ENSE000007267772184476721844915
ENSE000007269512184815021848246
ENSE000007271022185236821852505
ENSE000007279962188782621887934
ENSE000007283582191015721910312
ENSE000008222762179738921801181
ENSE000008222782180599821806060
ENSE000008222802180734621807479
ENSE000008222832180985221809955
ENSE000008222872181464421814722
ENSE000008222882181576321815893
ENSE000008222902181718721817307
ENSE000008222922181815021818251
ENSE000008222952182895821829060
ENSE000008222992184231421842471
ENSE000008223002184448321844552
ENSE000008223042184560321845832
ENSE000008223092185209721852222
ENSE000008223152186097121861055
ENSE000008223172186295321863054
ENSE000008223192187262521872730
ENSE000008223212187565421875726
ENSE000008223232188276621882873
ENSE000008223262189403221894174
ENSE000008223282190612621906288
ENSE000008223322190807721908211
ENSE000008223362191082621910978
ENSE000008223382191287221913066
ENSE000008223392191566821915910
ENSE000008223422191693721917103
ENSE000008223462192594221926063
ENSE000008223472193378221933923
ENSE000009949332186443921864477
ENSE000009949402189527521895315
ENSE000014280582194071021940825
ENSE000014314952193653321936694
ENSE000016063142185958621859666
ENSE000016094152183807821838170
ENSE000039111532194120021941426

Expression profiles

Bgee: expression breadth ubiquitous, 195 present calls, max score 92.54.

FANTOM5 (CAGE): breadth broad, TPM avg 3.1426 / max 101.0371, expressed in 498 samples.

FANTOM5 promoters (8 alternative TSS)

Promoter IDTPM avgSamples expressed
1300581.4307394
1300540.8554337
1300560.5101247
1300570.085039
1300520.071247
1300550.067234
1300530.063522
1300590.059624

Top tissues by expression

288 total, by Bgee expression score (0-100, higher = more expressed):

TissueAnatomy IDExpression scoreQuality
gastrocnemiusUBERON:000138892.54gold quality
muscle of legUBERON:000138392.31gold quality
hindlimb stylopod muscleUBERON:000425289.86gold quality
calcaneal tendonUBERON:000370189.45gold quality
heart left ventricleUBERON:000208488.23gold quality
apex of heartUBERON:000209887.91gold quality
right lobe of liverUBERON:000111487.87gold quality
cardiac ventricleUBERON:000208287.71gold quality
stromal cell of endometriumCL:000225587.58gold quality
mucosa of stomachUBERON:000119987.58gold quality
muscle organUBERON:000163087.02gold quality
buccal mucosa cellCL:000233685.83gold quality
body of uterusUBERON:000985385.79gold quality
right atrium auricular regionUBERON:000663185.76gold quality
esophagogastric junction muscularis propriaUBERON:003584185.67gold quality
gall bladderUBERON:000211085.50gold quality
heartUBERON:000094885.38gold quality
smooth muscle tissueUBERON:000113585.26gold quality
lower esophagus muscularis layerUBERON:003583384.91gold quality
lower esophagusUBERON:001347384.88gold quality
left uterine tubeUBERON:000130384.74gold quality
omental fat padUBERON:001041483.88gold quality
peritoneumUBERON:000235883.80gold quality
colonic epitheliumUBERON:000039783.79gold quality
subcutaneous adipose tissueUBERON:000219083.52gold quality
popliteal arteryUBERON:000225083.42gold quality
tibial arteryUBERON:000761083.40gold quality
cardiac atriumUBERON:000208183.10gold quality
islet of LangerhansUBERON:000000683.07gold quality
adipose tissue of abdominal regionUBERON:000780882.58gold quality

Single-cell (SCXA)

Detected in 10 experiment(s), a significant marker in 8.

ExperimentMarker?Max mean expression
E-MTAB-5061yes179.58
E-GEOD-110499yes139.28
E-ANND-3yes15.03
E-MTAB-9067yes11.87
E-GEOD-81608yes10.79
E-GEOD-83139yes5.47
E-ENAD-27yes5.02
E-MTAB-6678yes5.01
E-GEOD-76312no177.43
E-GEOD-81547no7.52

Regulation

Is transcription factor: no

Upstream regulators (CollecTRI, top): FOXO1, HIF1A

Literature-anchored findings (GeneRIF, showing 40)

  • Assembly limits the pharmacological complexity of ATP-sensitive potassium channels (PMID:11825905)
  • down-regulation of this channel may facilitate myometrial function during late pregnancy (PMID:12356945)
  • In corporal smooth muscle is composed of Kir6.1-Kir6.2 construct expressed with SUR2B.K(ATP) channel in corporal smooth muscle cells is composed of heteromultimers of Kir6.1 and Kir6.2 with the ratio of 3 : 1 or 4 : 0 and SUR2B. (PMID:12934053)
  • role of mutation in human dilated cardiomyopathy and effect on KATP channel gating (PMID:15034580)
  • Syn-1A binds both NBFs of SUR1 and SUR2A but appears to exhibit distinct interactions with NBF2 of these SUR proteins in modulating the KATP channels in islet beta cells and cardiac myocytes (PMID:15339904)
  • Syn-1A binds both NBFs of SUR1 and SUR2A but appears to exhibit distinct interactions with NBF2 of these SUR proteins in modulating the KATP channels in islet beta cells and cardiac myocytes (PMID:16267564)
  • newly discovered 734Ile allele in ABCC9 might influence susceptibility to precocious myocardial infarct in our population (PMID:16563363)
  • Syntaxin-1A actions on sulfonylurea receptor 2A blocks acidic pH-induced cardiac K(ATP) channel activation (PMID:16672225)
  • Results describe a new function of the Kir6.1-SUR2A complex, namely the regulation of paracellular permeability through tight junctions. (PMID:16820413)
  • review the structure and function of ABC proteins and discuss SUR, its regulation of the K(ATP) channel, and its role in cardiovascular disease. (PMID:18239147)
  • caveolin-dependent internalization is involved in PKC-epsilon-mediated inhibition of vascular K(ATP) channels (Kir6.1 and SUR2B) by phorbol 12-myristate 13-acetate or angiotensin II (PMID:18663158)
  • Kir6.1/SUR2B is the major functional K(ATP) channel complex in the pig MMA and MCA, and mRNA expression studies suggest that the human MMA shares this K(ATP) channel subunit profile (PMID:18996111)
  • caveolin-3 negatively regulates Kir6.2/SUR2A channel function. (PMID:19481058)
  • sequence variants in ABCC9 is unlikely to contribute to variation in postural change in systolic blood pressure (PMID:19952277)
  • These findings suggest that abnormal localization of the SUR2A K(+) channel protein leads to reduced K(ATP) channel activity in familial hypokalemic periodic paralysis. (PMID:19962959)
  • mammalian oocytes express K(ATP) channels. Real-time PCR revealed that mRNA for Kir6.1, Kir6.2, SUR2A and SUR2B, were present in human oocytes of different stages. (PMID:20847183)
  • This study showed that variants in the SUR2 gene (ABCC9) associate with epidemiological variation in human sleep duration, which is also influenced by inter-individual differences in seasonal adaptation and chronotype. (PMID:22105623)
  • Cantu syndrome is caused by mutations in ABCC9 (PMID:22608503)
  • Electrophysiological experiments show that mutations in ABCC9, associated with Cantu syndrome, reduce the ATP-mediated potassium channel inhibition, resulting in channel opening. (PMID:22610116)
  • two different de novo missense mutations in the two patients with coarse facial features and hypertrichosis (PMID:23307537)
  • A mutation (V734I) in ABCC9 increases susceptibility to coronary spasm and acute myocardial infarction. (PMID:23739550)
  • ABCC9 is a susceptibility gene for early repolarization syndrome and Brugada syndrome. (PMID:24439875)
  • Results show that a polymorphism in ABCC9 is associated with aging pathology, and exposure to sulfonylurea drugs is associated with increased risk for aging pathology among individuals who died age 85 and older (PMID:24770881)
  • This study confirmed that specific ABCC9 single-nucleotide polymorphisms is associated with HS-Aging pathology in the Alzheimer disease. (PMID:25470345)
  • We describe novel ABCC9 variants in human brain, corresponding to altered 3’UTR length, which could lead to targeting by miR-30c (PMID:26115089)
  • single amino acid difference can account for the markedly different diazoxide sensitivities between channels containing either the SUR1 or SUR2A subunit isoforms. (PMID:26181369)
  • ABCC9 polymorphism associated with Brain disorders: sleep problems. depression and HS-Aging. (PMID:26226329)
  • Analysis of three Cantu syndrome-associated gain of function mutations indicates that all lead to overactive K(ATP) channels, but at least two mechanisms underlie the observed gain of function: decreased ATP inhibition and enhanced MgADP activation. (PMID:26621776)
  • The patient reported here gives further evidence that these syndromes are an expression of the ABCC9-related disorders, ranging from hypertrichosis and acromegaloid facies to the severe end of Cantu syndrome. (PMID:26871653)
  • ABCC9 gene has been associated with Dilated Cardiomyopathy. 3 pathogenic variants have been associated with DCM: 1 missense -CM1410876-, 1 nonsense -CM040975-, and 1 small indel -CX041212. (PMID:27736720)
  • Significant gene-based association between the ABCC9 gene and hippocampal sclerosis-aging appeared to be driven by a region in which a significant haplotype-based association. (PMID:28131462)
  • ABCC9-related Intellectual disability Myopathy Syndrome is a K(ATP) channelopathy with loss-of-function mutations in ABCC9. (PMID:31575858)
  • Three-dimensional facial morphology in Cantu syndrome. (PMID:32100467)
  • Novel variants of ABCC9 in Japanese children with Cantu syndrome. (PMID:32198910)
  • Cantu syndrome versus Zimmermann-Laband syndrome: Report of nine individuals with ABCC9 variants. (PMID:32622958)
  • Novel cholesterol-dependent regulation of cardiac KATP subunit expression revealed using histone deacetylase inhibitors. (PMID:33356020)
  • Genetic Etiology of Left-Sided Obstructive Heart Lesions: A Story in Development. (PMID:33432820)
  • The expression of ATP-sensitive potassium channels in human umbilical arteries with severe pre-eclampsia. (PMID:33846486)
  • Consequences of SUR2[A478V] Mutation in Skeletal Muscle of Murine Model of Cantu Syndrome. (PMID:34359961)
  • Vascular KATP channel structural dynamics reveal regulatory mechanism by Mg-nucleotides. (PMID:34711681)

Cross-species orthologs

14 orthologs

OrganismSymbolGene ID
danio_rerioabcc9ENSDARG00000015985
mus_musculusAbcc9ENSMUSG00000030249
rattus_norvegicusAbcc9ENSRNOG00000036960
drosophila_melanogasterl(2)03659FBGN0010549
drosophila_melanogasterCG7627FBGN0032026
drosophila_melanogasterMRPFBGN0032456
drosophila_melanogasterCG9270FBGN0032908
drosophila_melanogasterCG10505FBGN0034612
drosophila_melanogasterMrp5FBGN0038740
drosophila_melanogasterrdogFBGN0039644
drosophila_melanogasterCG11898FBGN0039645
drosophila_melanogasterCG31792FBGN0051792
drosophila_melanogasterMrp4FBGN0263316
caenorhabditis_elegansWBGENE00000477

Paralogs (11): CFTR (ENSG00000001626), ABCC8 (ENSG00000006071), ABCC2 (ENSG00000023839), ABCC6 (ENSG00000091262), ABCC1 (ENSG00000103222), ABCC3 (ENSG00000108846), ABCC5 (ENSG00000114770), ABCC11 (ENSG00000121270), ABCC10 (ENSG00000124574), ABCC4 (ENSG00000125257), ABCC12 (ENSG00000140798)

Protein

Protein identifiers

ATP-binding cassette sub-family C member 9O60706 (reviewed: O60706)

Alternative names: Sulfonylurea receptor 2

All UniProt accessions (10): O60706, A0A804HHX2, A0A804HIU2, A0A804HK56, A0A804HKB7, A0A804HL22, A0A804HL58, G3V1N6, H0YFV4, Q8N4N7

UniProt curated annotations — full annotation on UniProt →

Function. Subunit of ATP-sensitive potassium channels (KATP). Can form cardiac and smooth muscle-type KATP channels with KCNJ11. KCNJ11 forms the channel pore while ABCC9 is required for activation and regulation. Can form a sulfonylurea-sensitive but ATP-insensitive potassium channel with KCNJ8.

Subunit / interactions. Interacts with KCNJ11. Interacts with KCNJ8.

Subcellular location. Membrane.

Disease relevance. Cardiomyopathy, dilated, 1O (CMD1O) [MIM:608569] A disorder characterized by ventricular dilation and impaired systolic function, resulting in congestive heart failure and arrhythmia. Patients are at risk of premature death. The disease is caused by variants affecting the gene represented in this entry. Atrial fibrillation, familial, 12 (ATFB12) [MIM:614050] A familial form of atrial fibrillation, a common sustained cardiac rhythm disturbance. Atrial fibrillation is characterized by disorganized atrial electrical activity and ineffective atrial contraction promoting blood stasis in the atria and reduces ventricular filling. It can result in palpitations, syncope, thromboembolic stroke, and congestive heart failure. The disease is caused by variants affecting the gene represented in this entry. Hypertrichotic osteochondrodysplasia (HTOCD) [MIM:239850] A rare disorder characterized by congenital hypertrichosis, neonatal macrosomia, a distinct osteochondrodysplasia, and cardiomegaly. The hypertrichosis leads to thick scalp hair, which extends onto the forehead, and a general increase in body hair. In addition, macrocephaly and coarse facial features, including a broad nasal bridge, epicanthal folds, a wide mouth, and full lips, can be suggestive of a storage disorder. About half of affected individuals are macrosomic and edematous at birth, whereas in childhood they usually have a muscular appearance with little subcutaneous fat. Thickened calvarium, narrow thorax, wide ribs, flattened or ovoid vertebral bodies, coxa valga, osteopenia, enlarged medullary canals, and metaphyseal widening of long bones have been reported. Cardiac manifestations such as patent ductus arteriosus, ventricular hypertrophy, pulmonary hypertension, and pericardial effusions are present in approximately 80% of cases. Motor development is usually delayed due to hypotonia. Most patients have a mild speech delay, and a small percentage have learning difficulties or intellectual disability. The disease is caused by variants affecting the gene represented in this entry. Intellectual disability and myopathy syndrome (IDMYS) [MIM:619719] An autosomal recessive disorder characterized by global developmental delay, mildly impaired intellectual development, hypotonia, muscle weakness and fatigue, and white matter abnormalities on brain imaging. Variable additional features may include sensorineural hearing loss, dysmorphic facies, and progressive heart disease. The disease is caused by variants affecting the gene represented in this entry.

Miscellaneous. May contribute to the regulation of sleep duration. An intronic variant of this gene may account for about 5% of the variation of sleep duration between individuals. Sleep duration is influenced both by environmental and genetic factors, with an estimated heritability of about 40%. Numerous genes are expected to contribute to the regulation of sleep duration.

Similarity. Belongs to the ABC transporter superfamily. ABCC family. Conjugate transporter (TC 3.A.1.208) subfamily.

Isoforms (2)

UniProt IDNamesCanonical?
O60706-1SUR2Ayes
O60706-2SUR2B

RefSeq proteins (4): NP_001364202, NP_001364203, NP_005682, NP_064693* (*=MANE)

Domains & families (InterPro)

IDNameType
IPR000388ABCC8/9Family
IPR001475ABCC9Family
IPR003439ABC_transporter-like_ATP-bdDomain
IPR003593AAA+_ATPaseDomain
IPR011527ABC1_TM_domDomain
IPR017871ABC_transporter-like_CSConserved_site
IPR027417P-loop_NTPaseHomologous_superfamily
IPR036640ABC1_TM_sfHomologous_superfamily
IPR047080ABCC9_ATP-bd_dom1Domain
IPR050173ABC_transporter_C-likeFamily

Pfam: PF00005, PF00664

UniProt features (66 total): sequence variant 17, topological domain 16, transmembrane region 15, glycosylation site 5, domain 4, sequence conflict 3, binding site 2, chain 1, region of interest 1, compositionally biased region 1, splice variant 1

Structure

Experimental structures (PDB)

0 structures.

Predicted structure (AlphaFold)

ModelpLDDTFraction very-high
AF-O60706-F181.720.35

Functional residue map

Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.

Ligand- & substrate-binding residues (2): 705–712; 1346–1353

Glycosylation sites (5): 9, 326, 330, 333, 334

Function

Pathways and Gene Ontology

Reactome pathways

13 pathways

IDPathway
R-HSA-1296025ATP sensitive Potassium channels
R-HSA-382556ABC-family protein mediated transport
R-HSA-5578775Ion homeostasis
R-HSA-5678420Defective ABCC9 causes CMD10, ATFB12 and Cantu syndrome
R-HSA-112316Neuronal System
R-HSA-1296065Inwardly rectifying K+ channels
R-HSA-1296071Potassium Channels
R-HSA-1643685Disease
R-HSA-382551Transport of small molecules
R-HSA-397014Muscle contraction
R-HSA-5576891Cardiac conduction
R-HSA-5619084ABC transporter disorders
R-HSA-5619115Disorders of transmembrane transporters

MSigDB gene sets: 554 (showing top): GSE18804_SPLEEN_MACROPHAGE_VS_COLON_TUMORAL_MACROPHAGE_DN, GOBP_POTASSIUM_ION_TRANSPORT, GOBP_LIPID_MODIFICATION, GOBP_RESPONSE_TO_NITROGEN_COMPOUND, GOBP_MUSCLE_TISSUE_DEVELOPMENT, GOBP_REGULATION_OF_BLOOD_PRESSURE, GOBP_CORONARY_VASCULATURE_DEVELOPMENT, GOBP_CIRCULATORY_SYSTEM_PROCESS, KAAB_FAILED_HEART_ATRIUM_DN, GOBP_RESPONSE_TO_PEPTIDE, REACTOME_POTASSIUM_CHANNELS, REACTOME_INWARDLY_RECTIFYING_K_CHANNELS, GOBP_RESPONSE_TO_POTASSIUM_ION, GOBP_ORGANOPHOSPHATE_METABOLIC_PROCESS, GOBP_MONOCARBOXYLIC_ACID_METABOLIC_PROCESS

GO Biological Process (54): MAPK cascade (GO:0000165), action potential (GO:0001508), response to hypoxia (GO:0001666), heart morphogenesis (GO:0003007), regulation of transcription by RNA polymerase II (GO:0006357), mitochondrion organization (GO:0007005), skeletal muscle tissue development (GO:0007519), gene expression (GO:0010467), response to activity (GO:0014823), fatty acid oxidation (GO:0019395), response to ATP (GO:0033198), cellular response to potassium ion (GO:0035865), vasodilation (GO:0042311), response to hydrogen peroxide (GO:0042542), negative regulation of apoptotic process (GO:0043066), response to estrogen (GO:0043627), cellular respiration (GO:0045333), negative regulation of blood pressure (GO:0045776), ATP metabolic process (GO:0046034), fibroblast proliferation (GO:0048144), defense response to virus (GO:0051607), transmembrane transport (GO:0055085), coronary vasculature development (GO:0060976), cardiac conduction (GO:0061337), cellular response to chemical stress (GO:0062197), cellular response to calcium ion (GO:0071277), cellular response to ATP (GO:0071318), cellular response to xenobiotic stimulus (GO:0071466), potassium ion transmembrane transport (GO:0071805), oxygen metabolic process (GO:0072592), cardiac muscle cell contraction (GO:0086003), monoatomic cation transmembrane transport (GO:0098655), obsolete inorganic cation transmembrane transport (GO:0098662), transport across blood-brain barrier (GO:0150104), regulation of potassium ion transmembrane transport (GO:1901379), response to peptide (GO:1901652), reactive oxygen species biosynthetic process (GO:1903409), response to hydrogen sulfide (GO:1904880), potassium ion import across plasma membrane (GO:1990573), blood vessel development (GO:0001568)

GO Molecular Function (15): potassium channel activity (GO:0005267), ATP binding (GO:0005524), sulfonylurea receptor activity (GO:0008281), potassium channel regulator activity (GO:0015459), ATP hydrolysis activity (GO:0016887), ATPase-coupled monoatomic cation transmembrane transporter activity (GO:0019829), ATPase-coupled transmembrane transporter activity (GO:0042626), obsolete ATPase-coupled inorganic anion transmembrane transporter activity (GO:0043225), transmembrane transporter binding (GO:0044325), protein-containing complex binding (GO:0044877), potassium channel activator activity (GO:0099104), ABC-type transporter activity (GO:0140359), nucleotide binding (GO:0000166), ATP-activated inward rectifier potassium channel activity (GO:0015272), transmembrane transporter activity (GO:0022857)

GO Cellular Component (9): mitochondrion (GO:0005739), plasma membrane (GO:0005886), inward rectifying potassium channel (GO:0008282), sarcomere (GO:0030017), potassium ion-transporting ATPase complex (GO:0031004), sarcolemma (GO:0042383), cytoplasm (GO:0005737), membrane (GO:0016020), protein-containing complex (GO:0032991)

Reactome top-level categories

Rollup of top-9 pathways:

CategoryPathways
Inwardly rectifying K+ channels1
Transport of small molecules1
Cardiac conduction1
ABC transporter disorders1
Potassium Channels1
Neuronal System1
Muscle contraction1
Disorders of transmembrane transporters1
Disease1

GO top-level categories

Rollup of top GO terms by namespace:

CategoryTerms
cellular anatomical structure3
potassium channel activity2
ATP-dependent activity2
ATPase-coupled transmembrane transporter activity2
intracellular signaling cassette1
regulation of membrane potential1
response to stress1
response to decreased oxygen levels1
heart development1
animal organ morphogenesis1
regulation of DNA-templated transcription1
transcription by RNA polymerase II1
organelle organization1
striated muscle tissue development1
skeletal muscle organ development1
macromolecule biosynthetic process1
response to stimulus1
fatty acid metabolic process1
lipid oxidation1
response to purine-containing compound1
response to organophosphorus1
response to oxygen-containing compound1
response to potassium ion1
cellular response to metal ion1
blood vessel diameter maintenance1
response to reactive oxygen species1
apoptotic process1
regulation of apoptotic process1
negative regulation of programmed cell death1
response to hormone1
energy derivation by oxidation of organic compounds1
regulation of blood pressure1
purine ribonucleotide metabolic process1
purine ribonucleoside triphosphate metabolic process1
cell population proliferation1
monoatomic cation channel activity1
potassium ion transmembrane transporter activity1
adenyl ribonucleotide binding1
purine ribonucleoside triphosphate binding1
transmembrane signaling receptor activity1

Protein interactions and networks

STRING

1716 interactions, top by confidence (×1000):

Protein AProtein BPartner UniProtScore
ABCC9KCNJ8Q15842992
ABCC9KCNJ11Q14654978
ABCC9RBM20Q5T481805
ABCC9SCN5AQ14524760
ABCC9MYBPC3Q14896723
ABCC9CSRP3P50461715
ABCC9DSG2Q14126713
ABCC9TMPOP08918707
ABCC9EYA4O95677703
ABCC9NEXNQ0ZGT2696
ABCC9LDB3O75112690
ABCC9TCAPO15273685
ABCC9SGCDQ92629680
ABCC9ACTN2P35609667
ABCC9KCNE5Q9UJ90664

IntAct

5 interactions, top by confidence:

ABTypeScore
HSPB2ABCC9psi-mi:“MI:0915”(physical association)0.370
Mpsi-mi:“MI:0914”(association)0.350
ABCC8ABCC9psi-mi:“MI:0914”(association)0.350
ABCC9KCNJ11psi-mi:“MI:2364”(proximity)0.270

BioGRID (7): ABCC9 (Two-hybrid), ABCC9 (Two-hybrid), ABCC9 (Affinity Capture-Western), ABCC9 (Affinity Capture-MS), ABCC9 (Affinity Capture-MS), ABCC9 (Protein-RNA), ESF1 (Cross-Linking-MS (XL-MS))

ESM2 similar proteins: A0A059JK44, A0A0D1BUH6, A0A0S6XH62, A0A0U1LQE1, A0A142I732, A0A179H0T5, A0A348AXX9, A0A3G9H9H1, A0A8J9WHR9, A7A063, C8ZCR2, F2Q5G0, F2RPA4, F9X9V4, G4N2B5, I1R9B3, I1RF50, I1S2J9, K0E4D9, K3VYH8, O15440, O60706, P0CE68, P0CE70, P0CU83, P14772, P21441, P38735, P70170, P82451, P9WEL8, Q08D64, Q10185, Q2UPC0, Q4WA92, Q4WSI1, Q4WT65, Q5A762, Q5AV01, Q63563

Diamond homologs: A0A0D1CZ63, A0A0U1LQE1, A0A1U8QTJ9, A2XCD4, A7KVC2, B2RX12, E9Q236, F1M3J4, F9X9V4, G4N2B5, J9VQH1, O15438, O15439, O15440, O31708, O35379, O60706, O70127, O88269, O88563, O95255, P0CE69, P14772, P16875, P16877, P21439, P21440, P32386, P33527, P38735, P39109, P53049, P70170, P82451, P91660, P9WEL8, Q07QX6, Q08201, Q09427, Q0VQP5

SIGNOR signaling

1 interactions.

AEffectBMechanism
ABCC9“form complex”“KATP channel”binding

Disease & clinical

Clinical variants and AI predictions

ClinVar

2182 variants total. Per-class counts are floors (≥ shown; pagination cap):

ClassificationCount (floor)
Pathogenic65
Likely pathogenic37
Uncertain significance940
Likely benign842
Benign121

Top pathogenic / likely-pathogenic (30)

Variant IDHGVSClassification
1000443NM_020297.4(ABCC9):c.2721T>G (p.Tyr907Ter)Pathogenic
1022992NM_020297.4(ABCC9):c.2371C>T (p.Gln791Ter)Pathogenic
1026876NM_020297.4(ABCC9):c.2422_2423del (p.Arg808fs)Pathogenic
1035485NM_020297.4(ABCC9):c.438del (p.Thr147fs)Pathogenic
1044828NM_020297.4(ABCC9):c.2826T>G (p.Tyr942Ter)Pathogenic
1057737NM_020297.4(ABCC9):c.2529_2530del (p.Ile844fs)Pathogenic
1395006NM_020297.4(ABCC9):c.1022_1032dup (p.Lys345fs)Pathogenic
1402291NM_020297.4(ABCC9):c.3269del (p.Gly1090fs)Pathogenic
1409851NM_020297.4(ABCC9):c.1319del (p.Gln440fs)Pathogenic
1446144NM_020297.4(ABCC9):c.1600del (p.Leu534fs)Pathogenic
146315GRCh38/hg38 12p12.3-12.1(chr12:15840854-22021652)x1Pathogenic
1482842NM_020297.4(ABCC9):c.1867G>T (p.Glu623Ter)Pathogenic
1486684NM_020297.4(ABCC9):c.1057_1073dup (p.Phe359_Leu360insTerPhe)Pathogenic
1527688GRCh37/hg19 12p12.3-11.23(chr12:17884992-26704895)Pathogenic
1711337NM_020297.4(ABCC9):c.3346C>G (p.Arg1116Gly)Pathogenic
1712081NM_020297.4(ABCC9):c.2444G>C (p.Gly815Ala)Pathogenic
2004320NM_020297.4(ABCC9):c.2625T>A (p.Tyr875Ter)Pathogenic
2008293NM_020297.4(ABCC9):c.2828C>G (p.Ser943Ter)Pathogenic
2018281NM_020297.4(ABCC9):c.1320+2T>GPathogenic
2018500NM_020297.4(ABCC9):c.729del (p.Ile243fs)Pathogenic
2022414NM_020297.4(ABCC9):c.2589_2590del (p.Arg864fs)Pathogenic
2023230NM_020297.4(ABCC9):c.3586C>T (p.Gln1196Ter)Pathogenic
2059714NM_020297.4(ABCC9):c.565C>T (p.Arg189Ter)Pathogenic
2081678NM_020297.4(ABCC9):c.259dup (p.Ile87fs)Pathogenic
2128352NM_020297.4(ABCC9):c.3388_3389insTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAAATCAATTCAAGATGGGATGATTTCTT (p.Tyr1130delinsPhePhePhePhePhePhePheXaaXaaXaaXaaLysLeuAlaSerHisMetTer)Pathogenic
2167066NM_020297.4(ABCC9):c.1219del (p.Glu407fs)Pathogenic
265666NM_020297.4(ABCC9):c.3460C>G (p.Arg1154Gly)Pathogenic
2663857NM_020297.4(ABCC9):c.2954A>C (p.Tyr985Ser)Pathogenic
2832242NM_020297.4(ABCC9):c.1108_1123del (p.Leu369_Gln370insTer)Pathogenic
2842642NM_020297.4(ABCC9):c.2099T>G (p.Leu700Ter)Pathogenic

SpliceAI

5080 predictions. Top by Δscore:

VariantEffectΔscore
12:21805996:A:ACdonor_gain1.0000
12:21805997:C:CCdonor_gain1.0000
12:21805997:CAG:Cdonor_gain1.0000
12:21806165:AATC:Adonor_gain1.0000
12:21807344:A:ACdonor_gain1.0000
12:21807345:C:CCdonor_gain1.0000
12:21815757:TCATA:Tdonor_loss1.0000
12:21815758:CATA:Cdonor_loss1.0000
12:21815759:ATAC:Adonor_loss1.0000
12:21815760:TACC:Tdonor_loss1.0000
12:21815761:ACC:Adonor_loss1.0000
12:21828956:ACCGT:Adonor_gain1.0000
12:21828957:CCGTC:Cdonor_gain1.0000
12:21829056:CATGC:Cacceptor_gain1.0000
12:21829057:ATGC:Aacceptor_gain1.0000
12:21829058:TGC:Tacceptor_gain1.0000
12:21829059:GC:Gacceptor_gain1.0000
12:21829059:GCC:Gacceptor_loss1.0000
12:21829060:CC:Cacceptor_gain1.0000
12:21829061:C:CAacceptor_loss1.0000
12:21829061:C:CCacceptor_gain1.0000
12:21829062:T:Aacceptor_loss1.0000
12:21838076:A:ACdonor_gain1.0000
12:21838077:C:CCdonor_gain1.0000
12:21838169:CC:Cacceptor_gain1.0000
12:21838170:CC:Cacceptor_gain1.0000
12:21838171:C:CCacceptor_gain1.0000
12:21852092:CTTA:Cdonor_loss1.0000
12:21852093:TTAC:Tdonor_loss1.0000
12:21852094:TAC:Tdonor_loss1.0000

AlphaMissense

10169 scored. Top likely-pathogenic:

VariantProtein changeam_pathogenicity
12:21807377:T:AD1473V1.000
12:21807377:T:GD1473A1.000
12:21807378:C:GD1473H1.000
12:21807428:A:GL1456P1.000
12:21814694:C:TG1351E1.000
12:21814695:C:AG1351W1.000
12:21818242:C:GG1227R1.000
12:21818242:C:TG1227R1.000
12:21828975:A:GW1218R1.000
12:21828975:A:TW1218R1.000
12:21838087:C:GR1186P1.000
12:21838103:C:GG1181R1.000
12:21838103:C:TG1181R1.000
12:21838165:A:GL1160P1.000
12:21852138:A:GW910R1.000
12:21852138:A:TW910R1.000
12:21852408:A:GL868P1.000
12:21852483:T:AD843V1.000
12:21852483:T:GD843A1.000
12:21852484:C:GD843H1.000
12:21852504:T:AD836V1.000
12:21852505:C:GD836H1.000
12:21861026:A:GL790P1.000
12:21872682:A:GL714P1.000
12:21872688:G:AS712F1.000
12:21872691:T:AK711M1.000
12:21872694:C:TG710E1.000
12:21872695:C:AG710W1.000
12:21872709:C:AG705V1.000
12:21872709:C:TG705D1.000

dbSNP variants (sampled 300 via entrez): RS1000001431 (12:21935217 T>C), RS1000035870 (12:21852163 G>A,T), RS1000050511 (12:21800939 CTG>C), RS1000056304 (12:21836579 G>A), RS1000076271 (12:21928237 A>G), RS1000087553 (12:21881541 A>T), RS1000107819 (12:21865371 G>A), RS1000107874 (12:21851610 C>G,T), RS1000123850 (12:21880733 A>T), RS1000151184 (12:21928795 A>G), RS1000168014 (12:21905742 C>G), RS1000192386 (12:21842147 T>C), RS1000209291 (12:21941367 C>A), RS1000211777 (12:21811916 T>C), RS1000214977 (12:21797024 G>T)

Disease associations

OMIM: gene MIM:601439 | disease phenotypes: MIM:608569, MIM:239850, MIM:614050, MIM:619719, MIM:601144, MIM:115195, MIM:607411, MIM:610253, MIM:115080, MIM:115200, MIM:194200

GenCC curated gene-disease

DiseaseClassificationInheritance
hypertrichotic osteochondrodysplasia Cantu typeDefinitiveAutosomal dominant
dilated cardiomyopathy 1OStrongAutosomal dominant
intellectual disability and myopathy syndromeStrongAutosomal recessive
familial isolated dilated cardiomyopathySupportiveAutosomal dominant
acromegaloid facial appearance syndromeSupportiveAutosomal dominant
hypertrichosis-acromegaloid facial appearance syndromeSupportiveAutosomal dominant
Brugada syndromeLimitedAutosomal dominant
atrial fibrillation, familial, 12LimitedUnknown

ClinGen Gene-Disease Validity (3)

Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.

DiseaseClassificationInheritance
Brugada syndromeDisputedAD
hypertrichotic osteochondrodysplasia Cantu typeDefinitiveAD
dilated cardiomyopathy 1OLimitedAD

Mondo (24): dilated cardiomyopathy 1O (MONDO:0012062), hypertrichotic osteochondrodysplasia Cantu type (MONDO:0009406), atrial fibrillation, familial, 12 (MONDO:0013545), intellectual disability and myopathy syndrome (MONDO:0859224), cardiomyopathy (MONDO:0004994), intellectual disability (MONDO:0001071), breast ductal adenocarcinoma (MONDO:0005590), dilated cardiomyopathy (MONDO:0005021), arrhythmogenic right ventricular cardiomyopathy (MONDO:0016587), Brugada syndrome (MONDO:0015263), hypertrophic cardiomyopathy 2 (MONDO:0007266), patent ductus arteriosus (MONDO:0011827), Kleefstra syndrome 1 (MONDO:0027407), myocardial infarction (MONDO:0005068), ventricular tachycardia (MONDO:0005477)

Orphanet (15): Familial isolated dilated cardiomyopathy (Orphanet:154), Cantú syndrome (Orphanet:1517), Rare cardiomyopathy (Orphanet:167848), Dilated cardiomyopathy (Orphanet:217604), Inherited arrhythmogenic cardiomyopathy (Orphanet:247), Brugada syndrome (Orphanet:130), Kleefstra syndrome (Orphanet:261494), Hereditary progressive cardiac conduction defect (Orphanet:871), Familial dilated cardiomyopathy with conduction defect due to LMNA mutation (Orphanet:300751), Familial dilated cardiomyopathy (Orphanet:217607), Rare hypertrophic cardiomyopathy (Orphanet:217569), NON RARE IN EUROPE: Unexplained intellectual disability (Orphanet:319658), Familial patent arterial duct (Orphanet:466729), NON RARE IN EUROPE: Patent arterial duct (Orphanet:706), NON RARE IN EUROPE: Wolff-Parkinson-White syndrome (Orphanet:907)

HPO phenotypes

125 total (30 of 125 shown, HPO-id order):

HPOTerm
HP:0000006Autosomal dominant inheritance
HP:0000007Autosomal recessive inheritance
HP:0000154Wide mouth
HP:0000179Thick lower lip vermilion
HP:0000212Gingival overgrowth
HP:0000215Thick upper lip vermilion
HP:0000219Thin upper lip vermilion
HP:0000256Macrocephaly
HP:0000280Coarse facial features
HP:0000286Epicanthus
HP:0000294Low anterior hairline
HP:0000336Prominent supraorbital ridges
HP:0000343Long philtrum
HP:0000407Sensorineural hearing impairment
HP:0000431Wide nasal bridge
HP:0000455Broad nasal tip
HP:0000463Anteverted nares
HP:0000470Short neck
HP:0000527Long eyelashes
HP:0000565Esotropia
HP:0000574Thick eyebrow
HP:0000601Hypotelorism
HP:0000639Nystagmus
HP:0000689Dental malocclusion
HP:0000739Anxiety
HP:0000774Narrow chest
HP:0000885Broad ribs
HP:0000926Platyspondyly
HP:0000939Osteoporosis
HP:0000944Abnormal metaphysis morphology

GWAS associations

11 associations (top):

StudyTraitp-value
GCST001356_16Gout1.000000e-07
GCST001762_947Obesity-related traits5.000000e-06
GCST002430_1Hippocampal sclerosis of aging1.000000e-09
GCST004862_22Itch intensity from mosquito bite adjusted by bite size5.000000e-06
GCST005146_53Birth weight1.000000e-07
GCST006629_35Pulse pressure7.000000e-20
GCST007269_121Pulse pressure2.000000e-14
GCST008363_121Offspring birth weight3.000000e-08
GCST90000025_1028Appendicular lean mass8.000000e-15
GCST90000026_13Appendicular lean mass4.000000e-06
GCST90000027_39Appendicular lean mass2.000000e-10

EFO canonical traits (7, from GWAS)

EFO IDTrait name
EFO:0003940physical activity
EFO:0008377mosquito bite reaction itch intensity measurement
EFO:0008378mosquito bite reaction size measurement
EFO:0004344birth weight
EFO:0005763pulse pressure measurement
EFO:0005939parental genotype effect measurement
EFO:0004980appendicular lean mass

MeSH disease descriptors (17)

DescriptorNameTree numbers
D019571Arrhythmogenic Right Ventricular DysplasiaC14.240.400.145; C14.280.238.028; C14.280.400.145; C16.131.240.400.145
D053840Brugada SyndromeC14.280.067.322; C14.280.123.250; C16.320.100
D018270Carcinoma, Ductal, BreastC04.557.470.200.025.232.500; C04.557.470.615.132.500; C04.588.180.390; C17.800.090.500.390
D009202CardiomyopathiesC14.280.238
D002311Cardiomyopathy, DilatedC14.280.195.160; C14.280.238.070; C16.320.488.750
D002312Cardiomyopathy, HypertrophicC14.280.238.100; C14.280.484.048.750.070.160
D004374Ductus Arteriosus, PatentC14.240.400.340; C14.280.400.340; C16.131.240.400.340
D008607Intellectual DisabilityC10.597.606.360; C23.888.592.604.646; F01.700.687; F03.625.539
D009203Myocardial InfarctionC14.280.647.500; C14.907.585.500; C23.550.513.355.750; C23.550.717.489.750
D017180Tachycardia, VentricularC14.280.067.845.940; C14.280.123.875.940; C23.550.073.845.940
D014927Wolff-Parkinson-White SyndromeC14.280.067.780.977; C14.280.123.750.977; C16.131.240.400.980
C535655Acromegaloid facial appearance syndrome (supp.)
C535572Cantu syndrome (supp.)
C563906Cardiomyopathy, Dilated, 1o (supp.)
C566171Cardiomyopathy, Familial Hypertrophic, 2 (supp.)
C563043Kleefstra Syndrome (supp.)
C536231familial dilated cardiomyopathy (supp.)

Drugs & pharmacology

Drug and pharmacology data

Is drug target: yes

ChEMBL targets (3): CHEMBL1971 (SINGLE PROTEIN), CHEMBL2095152 (PROTEIN COMPLEX GROUP), CHEMBL2095198 (PROTEIN COMPLEX)

Molecules with ChEMBL bioactivity

5 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 72,465 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).

MoleculeNamePhasePatents
CHEMBL1159PINACIDIL ANHYDROUS46,303
CHEMBL472GLYBURIDE453,236
CHEMBL631PROPAFENONE412,711
CHEMBL49035CROMAKALIM2135
CHEMBL12531CLAMIKALANT280

PharmGKB: 1 entry (VIP=true, CPIC=false)

PharmGKB clinical annotations

1 annotations.

VariantTypeLevelDrugsPhenotypes
rs704212Metabolism/PK3montelukastAsthma

PharmGKB variants

6 variants.

VariantGenesLevelScore#Clin annotsDrugs
rs2307024ABCC90.000
rs11046217ABCC90.000
rs704212ABCC932.001montelukast
rs829074ABCC90.000
rs11046238ABCC90.000
rs11046209ABCC90.000

GtoPdb / IUPHAR curated pharmacology

(IUPHAR/BPS Guide to Pharmacology — expert-curated)

Target class: transporter — ABCC subfamily

Most potent curated ligand interactions (1 total), top 1:

LigandActionAffinityParameter
compound 13b [PMID: 19101153]Positive6.17pEC50

ChEMBL bioactivities

536 potent at pChembl≥5 of 582 total, top 50 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).

pChemblTypeValueUnitMolecule
9.27EC500.537nMCHEMBL321455
9.17EC500.6761nMCHEMBL217511
9.04EC500.912nMCHEMBL426334
9.00EC501nMCHEMBL218564
8.93EC501.175nMCHEMBL214561
8.74EC501.82nMCHEMBL413532
8.56EC502.754nMCHEMBL217810
8.43EC503.715nMCHEMBL218564
8.41EC503.89nMCHEMBL384564
8.30EC505.012nMCHEMBL3138573
8.30EC505.012nMCHEMBL2111694
8.29EC505.129nMCHEMBL218564
8.26EC505.495nMCHEMBL426334
8.22EC506.026nMCHEMBL217847
8.20EC506.31nMCHEMBL323159
8.06EC508.71nMCHEMBL3392139
8.05EC508.913nMCHEMBL50760
8.01EC509.772nMCHEMBL386363
7.95EC5011.22nMCHEMBL2111694
7.90EC5012.59nMCHEMBL3138553
7.89EC5012.88nMCHEMBL108723
7.85EC5014.13nMCHEMBL386119
7.85EC5014.13nMCHEMBL108251
7.84EC5014.45nMCHEMBL265269
7.77EC5016.98nMCHEMBL216766
7.74EC5018.2nMCHEMBL216284
7.72EC5019.05nMCHEMBL215375
7.70EC5019.95nMCHEMBL386119
7.70IC5020nMCROMAKALIM
7.66EC5021.88nMCHEMBL11458
7.66EC5021.88nMCHEMBL3138587
7.65EC5022.39nMCHEMBL107888
7.64EC5022.91nMCHEMBL216546
7.64EC5022.91nMCHEMBL3138607
7.63EC5023.44nMCHEMBL110399
7.62EC5023.99nMCHEMBL386582
7.59EC5025.7nMCHEMBL3138549
7.59EC5025.7nMCHEMBL2112487
7.57EC5026.92nMCHEMBL386582
7.57EC5026.92nMCHEMBL261996
7.57EC5026.92nMCHEMBL426160
7.57Ki27nMCHEMBL11458
7.57EC5026.92nMCHEMBL320983
7.56EC5027.54nMCHEMBL384576
7.56EC5027.54nMCHEMBL214841
7.56EC5027.54nMCHEMBL320983
7.56EC5027.54nMCHEMBL108586
7.55EC5028.18nMCHEMBL3138545
7.54EC5028.84nMCHEMBL214841
7.53EC5029.51nMCHEMBL386323

PubChem BioAssay actives

547 with measured affinity, of 1101 total; 50 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.

CompoundAssayTypeValueUnit
9-(3-bromo-4-fluorophenyl)-5,13-dithia-2-azatricyclo[8.4.0.03,8]tetradeca-1(10),3(8)-diene-7,11-dione93975: Evaluated for K-ATP activity in terms of membrane potential change, through guinea pig bladder assayec500.0005uM
8-(3-bromo-4-fluorophenyl)-5,12-dioxa-2-azatricyclo[7.4.0.03,7]trideca-1(9),3(7)-diene-6,10-dione272331: Activity against pig bladder KATP channel opening assessed as ability to relax spontaneous bladder contractionec500.0007uM
(4S,8R)-8-(3-bromo-4-fluorophenyl)-4-methyl-5,12-dioxa-2-azatricyclo[7.4.0.03,7]trideca-1(9),3(7)-diene-6,10-dione272328: Ability to open human urinary bladder Kir6.2 channel containing SUR2B in Ltk cells by FLIPR assayec500.0009uM
(4S,8R)-8-(3-bromo-4-fluorophenyl)-4-propyl-5,12-dioxa-2-azatricyclo[7.4.0.03,7]trideca-1(9),3(7)-diene-6,10-dione272328: Ability to open human urinary bladder Kir6.2 channel containing SUR2B in Ltk cells by FLIPR assayec500.0010uM
(4R,8S)-8-(3-bromo-4-fluorophenyl)-4-ethyl-12-oxa-2-azatricyclo[7.4.0.03,7]trideca-1(9),3(7)-diene-6,10-dione272328: Ability to open human urinary bladder Kir6.2 channel containing SUR2B in Ltk cells by FLIPR assayec500.0012uM
(8R,13R)-8-(3-bromo-4-fluorophenyl)-13-methyl-5,12-dioxa-2-azatricyclo[7.4.0.03,7]trideca-1(9),3(7)-diene-6,10-dione272328: Ability to open human urinary bladder Kir6.2 channel containing SUR2B in Ltk cells by FLIPR assayec500.0018uM
(4S,8S)-8-(3-bromo-4-fluorophenyl)-4,5-dimethyl-12-oxa-2,5-diazatricyclo[7.4.0.03,7]tridec-3(7)-ene-6,10-dione272328: Ability to open human urinary bladder Kir6.2 channel containing SUR2B in Ltk cells by FLIPR assayec500.0028uM
(4S,8R)-8-(3-bromo-4-fluorophenyl)-4-ethyl-5,12-dioxa-2-azatricyclo[7.4.0.03,7]trideca-1(9),3(7)-diene-6,10-dione272328: Ability to open human urinary bladder Kir6.2 channel containing SUR2B in Ltk cells by FLIPR assayec500.0039uM
(8R)-8-(3-bromo-4-fluorophenyl)-6,6-dioxo-12-oxa-6lambda6-thia-2-azatricyclo[7.4.0.03,7]trideca-1(9),3(7)-dien-10-one93975: Evaluated for K-ATP activity in terms of membrane potential change, through guinea pig bladder assayec500.0050uM
(8S)-8-(3-bromo-4-fluorophenyl)-5,12-dioxa-2-azatricyclo[7.4.0.03,7]trideca-1(9),3(7)-diene-6,10-dione93985: Evaluated for K-ATP activity as in vitro bladder relaxation in spontaneous Landrace pig detrusor strips (SLPD)ec500.0050uM
(4S,8R)-8-(3-bromo-4-fluorophenyl)-4-ethyl-5,11-dioxa-2-azatricyclo[7.3.0.03,7]dodeca-1(9),3(7)-diene-6,10-dione272328: Ability to open human urinary bladder Kir6.2 channel containing SUR2B in Ltk cells by FLIPR assayec500.0060uM
(9S)-9-(3-bromo-4-fluorophenyl)-3,4,5,6,7,9-hexahydrofuro[3,4-b]quinoline-1,8-dione93975: Evaluated for K-ATP activity in terms of membrane potential change, through guinea pig bladder assayec500.0063uM
8-(3-bromo-4-fluorophenyl)-10,10-dioxo-5-oxa-10lambda6-thia-2-azatricyclo[7.4.0.03,7]trideca-1(9),3(7)-dien-6-one93975: Evaluated for K-ATP activity in terms of membrane potential change, through guinea pig bladder assayec500.0087uM
N-[2-(1,1,1,3,3,3-hexafluoro-2-hydroxypropan-2-yl)naphthalen-1-yl]propanamide159672: Potent effective concentration was evaluated for KATP channel opening activity in pig bladder stripsec500.0089uM
(4R,8R)-8-(3-bromo-4-fluorophenyl)-4-(methoxymethyl)-5,12-dioxa-2-azatricyclo[7.4.0.03,7]trideca-1(9),3(7)-diene-6,10-dione272328: Ability to open human urinary bladder Kir6.2 channel containing SUR2B in Ltk cells by FLIPR assayec500.0098uM
(9R)-9-(3-bromo-4-fluorophenyl)-1,1-dioxo-3,4,5,6,7,9-hexahydro-2H-thieno[3,2-b]quinolin-8-one93984: Evaluated for K-ATP activity as in vitro bladder relaxation in spontaneous Landrace pig detrusor strips (SLPD)ec500.0126uM
8-(3-bromo-4-fluorophenyl)-5-methyl-12-oxa-2,5-diazatricyclo[7.4.0.03,7]trideca-1(9),3(7)-diene-6,10-dione93975: Evaluated for K-ATP activity in terms of membrane potential change, through guinea pig bladder assayec500.0129uM
8-(3-bromo-4-fluorophenyl)-5,11-dioxa-2-azatricyclo[7.4.0.03,7]trideca-1(9),3(7)-diene-6,10-dione93975: Evaluated for K-ATP activity in terms of membrane potential change, through guinea pig bladder assayec500.0141uM
(4S,9R)-9-(3-bromo-4-fluorophenyl)-4-ethyl-5,13-dioxa-2-azatricyclo[8.4.0.03,8]tetradeca-1(10),3(8)-diene-7,11-dione272328: Ability to open human urinary bladder Kir6.2 channel containing SUR2B in Ltk cells by FLIPR assayec500.0141uM
(4S,8R)-8-(3-bromo-4-fluorophenyl)-4-ethyl-11,11-dimethyl-5,12-dioxa-2-azatricyclo[7.4.0.03,7]trideca-1(9),3(7)-diene-6,10-dione272328: Ability to open human urinary bladder Kir6.2 channel containing SUR2B in Ltk cells by FLIPR assayec500.0144uM
9-(3-bromo-4-fluorophenyl)-6,6-dimethyl-5,13-dioxa-2-azatricyclo[8.4.0.03,8]tetradeca-1(10),3(8)-diene-7,11-dione272328: Ability to open human urinary bladder Kir6.2 channel containing SUR2B in Ltk cells by FLIPR assayec500.0170uM
(8R,13R)-8-(3-bromo-4-fluorophenyl)-13-ethyl-5,12-dioxa-2-azatricyclo[7.4.0.03,7]trideca-1(9),3(7)-diene-6,10-dione272328: Ability to open human urinary bladder Kir6.2 channel containing SUR2B in Ltk cells by FLIPR assayec500.0182uM
(4R,8R)-8-(3-bromo-4-fluorophenyl)-4-ethyl-5,12-dioxa-2-azatricyclo[7.4.0.03,7]trideca-1(9),3(7)-diene-6,10-dione272331: Activity against pig bladder KATP channel opening assessed as ability to relax spontaneous bladder contractionec500.0191uM
3-hydroxy-2,2-dimethyl-4-(2-oxopyrrolidin-1-yl)-3,4-dihydrochromene-6-carbonitrile78296: Contraction and relaxation of guinea pig portal vein with KCl and glibenclamide respectivelyic500.0200uM
(9S)-9-(3-iodo-4-methylphenyl)-1,1-dioxo-3,4,5,6,7,9-hexahydro-2H-thieno[3,2-b]quinolin-8-one93974: Evaluated for K-ATP activity in terms of change in membrane potential through guinea pig bladder assayec500.0219uM
1-cyano-2-(2-methylbutan-2-yl)-3-pyridin-3-ylguanidine272331: Activity against pig bladder KATP channel opening assessed as ability to relax spontaneous bladder contractionec500.0219uM
(8S)-8-(3-bromo-4-fluorophenyl)-5-oxa-2-azatricyclo[7.3.0.03,7]dodeca-1(9),3(7)-diene-6,10-dione93975: Evaluated for K-ATP activity in terms of membrane potential change, through guinea pig bladder assayec500.0224uM
(4S,8R)-8-(3-bromo-4-fluorophenyl)-4-(methoxymethyl)-5,12-dioxa-2-azatricyclo[7.4.0.03,7]trideca-1(9),3(7)-diene-6,10-dione272328: Ability to open human urinary bladder Kir6.2 channel containing SUR2B in Ltk cells by FLIPR assayec500.0229uM
(9S)-9-(3-bromo-4-fluorophenyl)-1,1-dioxo-3,4,5,6,7,9-hexahydro-2H-thieno[3,2-b]quinolin-8-one93984: Evaluated for K-ATP activity as in vitro bladder relaxation in spontaneous Landrace pig detrusor strips (SLPD)ec500.0229uM
8-(3-bromo-4-fluorophenyl)-5,11-dioxa-2-azatricyclo[7.3.0.03,7]dodeca-1(9),3(7)-diene-6,10-dione93985: Evaluated for K-ATP activity as in vitro bladder relaxation in spontaneous Landrace pig detrusor strips (SLPD)ec500.0234uM
8-(3-bromo-4-fluorophenyl)-11,11-dimethyl-5,12-dioxa-2-azatricyclo[7.4.0.03,7]trideca-1(9),3(7)-diene-6,10-dione272328: Ability to open human urinary bladder Kir6.2 channel containing SUR2B in Ltk cells by FLIPR assayec500.0240uM
(8R)-8-(3-bromo-4-fluorophenyl)-5,12-dioxa-2-azatricyclo[7.4.0.03,7]trideca-1(9),3(7)-diene-6,10-dione93975: Evaluated for K-ATP activity in terms of membrane potential change, through guinea pig bladder assayec500.0257uM
(9S)-9-(3-bromo-4-chlorophenyl)-1,1-dioxo-3,4,5,6,7,9-hexahydro-2H-thieno[3,2-b]quinolin-8-one93974: Evaluated for K-ATP activity in terms of change in membrane potential through guinea pig bladder assayec500.0257uM
8-(3-bromo-4-fluorophenyl)-4,4-dimethyl-5,12-dioxa-2-azatricyclo[7.4.0.03,7]trideca-1(9),3(7)-diene-6,10-dione272328: Ability to open human urinary bladder Kir6.2 channel containing SUR2B in Ltk cells by FLIPR assayec500.0269uM
9-(3-bromo-4-fluorophenyl)-5,13-dioxa-2-azatricyclo[8.4.0.03,8]tetradeca-1(10),3(8)-diene-7,11-dione93975: Evaluated for K-ATP activity in terms of membrane potential change, through guinea pig bladder assayec500.0269uM
(4R,8R)-8-(4-fluoro-3-iodophenyl)-4-propyl-5,12-dioxa-2-azatricyclo[7.4.0.03,7]trideca-1(9),3(7)-diene-6,10-dione272328: Ability to open human urinary bladder Kir6.2 channel containing SUR2B in Ltk cells by FLIPR assayec500.0269uM
7-(3-bromo-4-fluorophenyl)-5-methyl-1,1-dioxo-2,3,4,7-tetrahydrothieno[3,2-b]pyridine-6-carbonitrile93974: Evaluated for K-ATP activity in terms of change in membrane potential through guinea pig bladder assayec500.0275uM
(4R,8R)-8-(3-bromo-4-fluorophenyl)-4-propyl-5,12-dioxa-2-azatricyclo[7.4.0.03,7]trideca-1(9),3(7)-diene-6,10-dione272328: Ability to open human urinary bladder Kir6.2 channel containing SUR2B in Ltk cells by FLIPR assayec500.0275uM
(4S,8R)-8-(3-bromo-4-fluorophenyl)-4-(2-methylpropyl)-5,12-dioxa-2-azatricyclo[7.4.0.03,7]trideca-1(9),3(7)-diene-6,10-dione272328: Ability to open human urinary bladder Kir6.2 channel containing SUR2B in Ltk cells by FLIPR assayec500.0275uM
(9S)-9-(4-fluoro-3-iodophenyl)-1,1-dioxo-3,4,5,6,7,9-hexahydro-2H-thieno[3,2-b]quinolin-8-one93974: Evaluated for K-ATP activity in terms of change in membrane potential through guinea pig bladder assayec500.0282uM
(4S,8R)-8-(3-bromo-4-fluorophenyl)-4-butyl-5,12-dioxa-2-azatricyclo[7.4.0.03,7]trideca-1(9),3(7)-diene-6,10-dione272328: Ability to open human urinary bladder Kir6.2 channel containing SUR2B in Ltk cells by FLIPR assayec500.0295uM
9-(3-bromo-4-fluorophenyl)-5,6,7,9-tetrahydro-4H-pyrazolo[5,1-b]quinazolin-8-one73908: Potassium channel opening activity determined in cultured guinea pig urinary bladder cellsec500.0300uM
9-(4-bromo-3-fluorophenyl)-5,6,7,9-tetrahydro-4H-pyrazolo[5,1-b]quinazolin-8-one73908: Potassium channel opening activity determined in cultured guinea pig urinary bladder cellsec500.0300uM
(8R)-8-(3-bromo-4-fluorophenyl)-6,6-dioxo-6lambda6-thia-2-azatricyclo[7.3.0.03,7]dodeca-1(9),3(7)-dien-10-one93977: Evaluated for K-ATP activity in terms of stable twitch response through field-stimulated landrace pig detrusor assayec500.0309uM
8-(3-bromo-4-fluorophenyl)-12-oxa-2-azatricyclo[7.4.0.03,7]trideca-1(9),3(7)-diene-6,10-dione93975: Evaluated for K-ATP activity in terms of membrane potential change, through guinea pig bladder assayec500.0316uM
(9R)-9-(3-bromo-4-fluorophenyl)-3,4,5,6,7,9-hexahydrofuro[3,4-b]quinoline-1,8-dione93985: Evaluated for K-ATP activity as in vitro bladder relaxation in spontaneous Landrace pig detrusor strips (SLPD)ec500.0324uM
(3R,4S)-3-hydroxy-2,2-dimethyl-4-(2-oxopyrrolidin-1-yl)-3,4-dihydrochromene-6-carbonitrile272331: Activity against pig bladder KATP channel opening assessed as ability to relax spontaneous bladder contractionec500.0347uM
9-(3-bromo-4-fluorophenyl)-7,7-dimethyl-4,4a,5,6,8a,9-hexahydropyrazolo[5,1-b]quinazolin-8-one73908: Potassium channel opening activity determined in cultured guinea pig urinary bladder cellsec500.0350uM
5-(3-bromo-4-fluorophenyl)-1,5,7,8,9,10-hexahydropyrano[3,4-b]quinoline-4,6-dione93975: Evaluated for K-ATP activity in terms of membrane potential change, through guinea pig bladder assayec500.0355uM
10-(3-bromo-4-fluorophenyl)-1,1-dioxo-2,3,4,5,6,7,8,10-octahydrothiopyrano[3,2-b]quinolin-9-one93974: Evaluated for K-ATP activity in terms of change in membrane potential through guinea pig bladder assayec500.0380uM

CTD chemical–gene interactions

35 total (human), top 30 by PubMed support.

ChemicalActions (top 5)PubMed papers
Benzo(a)pyreneincreases methylation, decreases expression, decreases methylation3
Acetaminophendecreases expression, increases expression2
Tetrachlorodibenzodioxinaffects cotreatment, decreases expression, affects expression2
Aflatoxin B1decreases methylation, decreases expression2
methyleugenoldecreases expression1
sodium arseniteincreases expression1
2-amino-3,8-dimethylimidazo(4,5-f)quinoxalinedecreases expression1
S-(1,2-dichlorovinyl)cysteineaffects response to substance, increases expression, affects cotreatment1
diallyl trisulfideincreases expression1
N,N,N’,N’-tetrakis(2-pyridylmethyl)ethylenediamineincreases expression1
CGP 52608affects binding, increases reaction1
perfluoro-n-nonanoic aciddecreases expression1
2-palmitoylglycerolincreases expression1
abrineincreases expression1
bisphenol Sdecreases methylation1
jinfukangdecreases expression1
(+)-JQ1 compounddecreases expression1
Docetaxeldecreases response to substance, increases expression1
Sunitinibincreases expression1
Cisplatindecreases expression1
Doxorubicindecreases expression1
Endosulfandecreases expression, affects cotreatment1
Ivermectindecreases expression1
Lipopolysaccharidesaffects response to substance, increases expression, affects cotreatment1
Niclosamidedecreases expression1
Progesteroneincreases expression1
Tobacco Smoke Pollutiondecreases expression1
Triclosandecreases expression1
Cyclosporinedecreases expression1
Aflatoxin M1decreases expression1

ChEMBL screening assays

61 unique, capped per target: 46 functional, 15 binding

Representative assays (with source publication via chembl_document):

Assay IDTypeDescriptionSource paper
CHEMBL1006149BindingChannel opening activity at SUR2B/Kir6.2 potassium ATP channel in human TE671 cells assessed as isometric force by FLIPRDiscovery and structure-activity relationships of a novel series of benzopyran-based K(ATP) openers for urge urinary incontinence. — Bioorg Med Chem
CHEMBL678531FunctionalPotassium channel opening activity determined in cultured guinea pig urinary bladder cellsStructure-Activity studies for a novel series of tricyclic dihydropyrimidines as K(ATP) channel openers (KCOs). — Bioorg Med Chem Lett

Cellosaurus cell lines

1 cell lines: 1 transformed cell line

First 10 cell lines (id-ordered, not curated):

CellosaurusNameCategorySex
CVCL_D1JTPrecisION hKir6.2/SUR2A (KATP)-HEKTransformed cell lineFemale

Clinical trials (associated diseases)

343 trials via MONDO — disease-level, not drug-specific.

TrialPhaseStatusTitle
NCT00702117PHASE4COMPLETEDAjmaline Utilization in the Diagnosis and Treatment of Cardiac Arrhythmias
NCT00348530PHASE4UNKNOWNCarvedilol Versus Verapamil in Chronic Heart Failure Secondary to Non-Ischemic Cardiomyopathy
NCT00371891PHASE4COMPLETEDOntario Multidetector Computed Tomographic (MDCT) Coronary Angiography Study (OMCAS)
NCT00401856PHASE4COMPLETEDCMR to Assess Fibrosis in Cardiomyopathy Using Eplerenone
NCT00559338PHASE4COMPLETEDImpact of Nesiritide Infusion for Decompensated Heart Failure in the Emergency Department
NCT00606775PHASE4UNKNOWNThe Preventive Efficacy of Carvedilol on Cardiac Dysfunction in Duchenne Muscular Dystrophy
NCT00658203PHASE4COMPLETEDClinical Evaluation on Advanced Resynchronization
NCT00701220PHASE4COMPLETEDStatin Therapy for Ischemic and Nonischemic Cardiomyopathy
NCT00800761PHASE4COMPLETEDIntensive Combined Chelation Therapy for Iron-Induced Cardiac Disease in Patients With Thalassemia Major
NCT00806390PHASE4TERMINATEDPrevention of Anthracycline or Trastuzumab Induced Cardiomyopathy by Metoprolol
NCT01006473PHASE4COMPLETEDExercise Training in Chagas Cardiomyopathy
NCT01261065PHASE4COMPLETEDMechanisms of Improvement With Beta-Blocker Treatment in Heart Failure
NCT01345188PHASE4COMPLETEDRanolazine in Ischemic Cardiomyopathy
NCT01868841PHASE4COMPLETED123-I mIBG (AdreView) Heart-to-Mediastinal (H/M) Ratio and SPECT Imaging on a Small Field of View-High Efficiency Cardiac SPECT System
NCT02640846PHASE4UNKNOWNEffects of Levosimendan, Milrinone and Norepinephrine on Left and Right Ventricular Function in Septic Shock
NCT03228823PHASE4UNKNOWNProspective Assessment of Premature Ventricular Contractions Suppression in Cardiomyopathy(PAPS)
NCT04323852PHASE4COMPLETEDCan Vitamin D Reduce Heart Muscle Damage After Bypass Surgery?
NCT05034432PHASE4RECRUITINGThe PIVATAL Study -Study of Ventricular Arrhythmia (VTA) Ablation in Left Ventricular Assist Device (LVAD) Patients
NCT05718128PHASE4RECRUITINGClinical Study of Endocardial Myocardial Biopsy
NCT06964464PHASE4RECRUITINGComparative Effectiveness of Carvedilol Versus Metoprolol Succinate in Heart Failure Patients With an Implantable Cardioverter Defibrillator
NCT00701077PHASE3TERMINATEDDAPERB 3,4-DiAminoPyridine and Electrophysiological Response in Brugada Syndrome
NCT00927732PHASE3TERMINATEDHydroquinidine Versus Placebo in Patients With Brugada Syndrome
NCT00170183PHASE3COMPLETEDBrain Natriuretic Peptide (BNP) to Preserve Renal Function in Hospitalized Patients With Heart Failure
NCT00270387PHASE3COMPLETEDA Study of Short-Term Outcomes and Economic Impact For Patients With Worsening Congestive Heart Failure When Natrecor (Nesiritide) is Added to Standard-Care Therapy, Compared to Administration of Placebo With Standard-Care Therapy
NCT00321295PHASE3COMPLETEDBiventricular Pacing In Patients With Left Ventricular Dysfunction After Cardiovascular Surgery
NCT00483197PHASE3UNKNOWNVentrAssistTM LVAD as a Bridge to Cardiac Transplantation - Pivotal Trial
NCT00490321PHASE3UNKNOWNVentrAssistTM LVAD for the Treatment of Advanced Heart Failure - Destination Therapy
NCT00626028PHASE3COMPLETEDComparison of Inhaled Nitric Oxide and Oxygen in Participants Reactivity During Acute Pulmonary Vasodilator Testing
NCT01013714PHASE3UNKNOWNCardiac Sympathetic Denervation for Prevention of Ventricular Tachyarrhythmias
NCT01217827PHASE3COMPLETEDImplantable Cardioverter-Defibrillator Use in the VA System
NCT01648634PHASE3COMPLETEDNebivolol for the Prevention of Left Ventricular Systolic Dysfunction in Patients With Duchenne Muscular Dystrophy
NCT02924285PHASE3COMPLETEDCatheter Ablation Versus Amiodarone for Therapy of Premature Ventricular Contractions in Patients With Structural Heart Disease
NCT03860935PHASE3COMPLETEDEfficacy and Safety of AG10 in Subjects With Transthyretin Amyloid Cardiomyopathy
NCT04166331PHASE3COMPLETEDAdjunctive DobutAmine in sePtic Cardiomyopathy With Tissue Hypoperfusion
NCT05175066PHASE3COMPLETEDBisoprolol Administration to Prevent Anthracycline-induced Cardiotoxicity
NCT05237323PHASE3COMPLETEDMicophenolate Mofetil Versus Azathioprine in Myocarditis
NCT06158698PHASE3RECRUITINGCMP-MYTHiC Trial and Registry - CardioMyoPathy With MYocarditis THerapy With Colchicine
NCT06563895PHASE3RECRUITINGAcoramidis Transthyretin Amyloidosis Prevention Trial in the Young (ACT-EARLY) Study in Asymptomatic Carriers of a Pathogenic TTR Variant
NCT06846086PHASE3RECRUITINGCardioprotective Effects of Melatonin in Patients With Cardiomyopathy
NCT07116473PHASE3NOT_YET_RECRUITINGTo Evaluate the Long-term Safety and Tolerability of Acoramidis in Participants With Newly Diagnosed ATTR-CM (ACT-EARLY OLE)