ABCG1
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Also known as ABC8
Summary
ABCG1 (ATP binding cassette subfamily G member 1, HGNC:73) is a protein-coding gene on chromosome 21q22.3, encoding ATP-binding cassette sub-family G member 1 (P45844). Catalyzes the efflux of phospholipids such as sphingomyelin, cholesterol and its oxygenated derivatives like 7beta-hydroxycholesterol and this transport is coupled to hydrolysis of ATP.
The protein encoded by this gene is a member of the superfamily of ATP-binding cassette (ABC) transporters. ABC proteins transport various molecules across extra- and intra-cellular membranes. ABC genes are divided into seven distinct subfamilies (ABC1, MDR/TAP, MRP, ALD, OABP, GCN20, White). This protein is a member of the White subfamily. It is involved in macrophage cholesterol and phospholipids transport, and may regulate cellular lipid homeostasis in other cell types. Six alternative splice variants have been identified.
Source: NCBI Gene 9619 — RefSeq curated summary.
At a glance
- GWAS associations: 9
- Clinical variants (ClinVar): 146 total — 29 pathogenic, 2 likely-pathogenic
- MANE Select transcript:
NM_016818
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:73 |
| Approved symbol | ABCG1 |
| Name | ATP binding cassette subfamily G member 1 |
| Location | 21q22.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | ABC8 |
| Ensembl gene | ENSG00000160179 |
| Ensembl biotype | protein_coding |
| OMIM | 603076 |
| Entrez | 9619 |
Gene structure
Transcript identifiers
Ensembl transcripts: 15 — 11 protein_coding, 3 retained_intron, 1 protein_coding_CDS_not_defined
ENST00000343687, ENST00000347800, ENST00000361802, ENST00000398437, ENST00000398449, ENST00000398457, ENST00000450121, ENST00000462050, ENST00000467818, ENST00000472587, ENST00000496783, ENST00000878297, ENST00000878298, ENST00000878299, ENST00000878300
RefSeq mRNA: 6 — MANE Select: NM_016818
NM_004915, NM_016818, NM_207174, NM_207627, NM_207628, NM_207629
CCDS: CCDS13681, CCDS13682, CCDS13683, CCDS42937, CCDS42938
Canonical transcript exons
ENST00000398449 — 15 exons
| Exon | Start | End |
|---|---|---|
| ENSE00003477889 | 42276895 | 42276945 |
| ENSE00003496464 | 42291498 | 42291656 |
| ENSE00003505582 | 42285880 | 42285994 |
| ENSE00003506666 | 42225671 | 42225914 |
| ENSE00003523195 | 42271070 | 42271187 |
| ENSE00003543273 | 42273303 | 42273435 |
| ENSE00003544349 | 42288211 | 42288312 |
| ENSE00003547441 | 42282274 | 42282419 |
| ENSE00003553101 | 42287889 | 42288037 |
| ENSE00003670239 | 42291092 | 42291192 |
| ENSE00003674298 | 42294542 | 42294660 |
| ENSE00003688085 | 42290050 | 42290218 |
| ENSE00003688526 | 42296164 | 42297244 |
| ENSE00003689634 | 42284560 | 42284683 |
| ENSE00003900760 | 42219140 | 42219304 |
Expression profiles
Bgee: expression breadth ubiquitous, 270 present calls, max score 92.24.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 13.0865 / max 369.0332, expressed in 1115 samples.
FANTOM5 promoters (4 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 189281 | 12.7984 | 1110 |
| 189282 | 0.1902 | 103 |
| 189280 | 0.0756 | 31 |
| 189279 | 0.0223 | 10 |
Top tissues by expression
289 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| right adrenal gland | UBERON:0001233 | 92.24 | gold quality |
| left adrenal gland | UBERON:0001234 | 92.04 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 91.80 | gold quality |
| jejunal mucosa | UBERON:0000399 | 91.70 | gold quality |
| left adrenal gland cortex | UBERON:0035825 | 91.32 | gold quality |
| adrenal cortex | UBERON:0001235 | 91.30 | gold quality |
| adrenal gland | UBERON:0002369 | 90.98 | gold quality |
| spleen | UBERON:0002106 | 90.09 | gold quality |
| skeletal muscle tissue of rectus abdominis | UBERON:0004511 | 89.68 | gold quality |
| lower lobe of lung | UBERON:0008949 | 89.59 | gold quality |
| amniotic fluid | UBERON:0000173 | 89.38 | gold quality |
| medial globus pallidus | UBERON:0002477 | 89.04 | gold quality |
| upper lobe of left lung | UBERON:0008952 | 88.98 | gold quality |
| upper lobe of lung | UBERON:0008948 | 88.86 | gold quality |
| tendon of biceps brachii | UBERON:0008188 | 88.29 | gold quality |
| right lung | UBERON:0002167 | 88.18 | gold quality |
| pigmented layer of retina | UBERON:0001782 | 87.56 | gold quality |
| epithelium of nasopharynx | UBERON:0001951 | 87.56 | gold quality |
| lung | UBERON:0002048 | 87.42 | gold quality |
| visceral pleura | UBERON:0002401 | 87.17 | gold quality |
| globus pallidus | UBERON:0001875 | 87.01 | gold quality |
| blood | UBERON:0000178 | 86.65 | gold quality |
| islet of Langerhans | UBERON:0000006 | 86.59 | gold quality |
| mucosa of paranasal sinus | UBERON:0005030 | 85.91 | gold quality |
| duodenum | UBERON:0002114 | 85.67 | gold quality |
| penis | UBERON:0000989 | 85.59 | gold quality |
| choroid plexus epithelium | UBERON:0003911 | 85.50 | gold quality |
| colonic mucosa | UBERON:0000317 | 85.13 | gold quality |
| pericardium | UBERON:0002407 | 85.12 | gold quality |
| lymph node | UBERON:0000029 | 85.10 | gold quality |
Single-cell (SCXA)
Detected in 2 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 7.82 |
| E-MTAB-6386 | no | 148.29 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): NFKB, NR0B2, NR1H2, NR1H3, PPARG, RARA, RXRB, SP1, ZNF202
miRNA regulators (miRDB)
50 targeting ABCG1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-3662 | 99.99 | 73.82 | 5684 |
| HSA-MIR-548AW | 99.99 | 72.57 | 3559 |
| HSA-MIR-3148 | 99.97 | 75.06 | 6478 |
| HSA-MIR-9-3P | 99.96 | 70.88 | 2068 |
| HSA-MIR-338-5P | 99.92 | 72.34 | 2951 |
| HSA-MIR-329-3P | 99.91 | 66.56 | 1234 |
| HSA-MIR-362-3P | 99.91 | 66.38 | 1267 |
| HSA-MIR-6124 | 99.87 | 69.78 | 3551 |
| HSA-MIR-221-5P | 99.86 | 65.45 | 1052 |
| HSA-MIR-8073 | 99.86 | 65.21 | 1118 |
| HSA-MIR-132-3P | 99.73 | 70.56 | 1424 |
| HSA-MIR-212-3P | 99.73 | 70.65 | 1424 |
| HSA-MIR-4306 | 99.72 | 70.50 | 3630 |
| HSA-MIR-567 | 99.63 | 68.57 | 1219 |
| HSA-MIR-24-3P | 99.59 | 69.97 | 1934 |
| HSA-MIR-141-5P | 99.57 | 67.86 | 897 |
| HSA-MIR-6740-3P | 99.48 | 68.49 | 1392 |
| HSA-MIR-208A-5P | 99.42 | 70.83 | 1913 |
| HSA-MIR-208B-5P | 99.42 | 70.83 | 1952 |
| HSA-MIR-185-5P | 99.35 | 68.60 | 2497 |
| HSA-MIR-4644 | 99.35 | 69.12 | 2514 |
| HSA-MIR-520F-5P | 99.34 | 70.40 | 1632 |
| HSA-MIR-6505-3P | 99.34 | 67.39 | 1071 |
| HSA-MIR-1207-3P | 98.99 | 66.22 | 1532 |
| HSA-MIR-6876-3P | 98.97 | 65.69 | 765 |
| HSA-MIR-626 | 98.89 | 66.21 | 762 |
| HSA-MIR-384 | 98.71 | 67.34 | 1229 |
| HSA-MIR-1301-3P | 98.64 | 68.27 | 1071 |
| HSA-MIR-5047 | 98.64 | 68.62 | 1035 |
| HSA-MIR-6776-5P | 98.54 | 67.43 | 1304 |
Literature-anchored findings (GeneRIF, showing 40)
- ABCG1 is not required for apolipoprotein A-1-mediated endothelial cholesterol efflux from vascular endothelial cells. (PMID:15492319)
- Analysis of the effect of the Su(Hw) insulator on the expression of the miniwhite gene in Drosophila melanogaster. (PMID:15584507)
- ABCG1 redistributes cholesterol to cell-surface domains where it becomes accessible for removal by HDL, demonstrating its direct role of ABCG1 in cellular cholesterol transport (PMID:15994327)
- characterization of two LXR response elements in first & second introns of the ABCG1 gene & demonstrate their function in cultured macrophage & liver cells; studies clarify mechanism of upregulation of the ABCG1 gene by oxysterols in macrophages & liver (PMID:16024918)
- Abcg1 is a key gene involved in both cholesterol efflux to HDL and in tissue lipid homeostasis (PMID:16054053)
- synergistic relationship between ABCA1 and ABCG1 in peripheral tissues, where ABCA1 lipidates any lipid-poor/free apoA-I to generate nascent or pre-beta-HDL (PMID:16357317)
- ABCG1 was localized to the plasma membrane in HEK293 cells and mediate the efflux of cholesterol and choline phospholipids. (PMID:16702602)
- provides the first evidence that unsaturated fatty acids suppress ABCG1 gene expression by a mechanism which involves the binding of LXR/RXR to the promoters (PMID:16730733)
- Macrophage ABCG1 deficiency does lead to heavy lipid accumulation in macrophages of the lung, and also a moderately significant effect on atherosclerotic lesion development was observed. (PMID:16857950)
- The splice variant ABCG1(666) may be the most prominent form of functional ABCG1 expressed in the human. (PMID:16870176)
- ABCG1 and ABCG4 act in concert with ABCA1 to maximize the removal of excess cholesterol from cells and to generate cholesterol-rich lipoprotein particles (PMID:16902247)
- NPC1 protein function is non-essential for the trafficking and removal of cellular cholesterol by ApoAI if the down-stream defects in ABCA1 and ABCG1 regulation in NPC disease cells are corrected using an LXR agonist (PMID:17020879)
- Two genes of the cholesterol efflux system (ABCA1 and ABCG1) were down-regulated in HCAECs exposed to uraemic plasma. (PMID:17082211)
- ABCG1 plays a significant role in the regulation of neuronal cholesterol efflux to apolipoprotein E discs. (PMID:17121837)
- These results indicate that positional and geometrical isomers of CLAs have specific effects on gene expression of human macrophages and that t9,t11-CLA activates ABCG1 by a SREBP-1c-dependent mechanism. (PMID:17141191)
- In intermediate phenotypes of suicidal behavior,ABCG1 might act on suicidal behavior through these traits. (PMID:17187964)
- Results show that ABCG1 mRNA expression increased in response to dexamethasone in primary rat hepatocytes however, the effect was absent or inhibitory in human HepG2 cells and THP-1 macrophages due to low glucocorticoid receptor levels. (PMID:17241464)
- altered cholesterol metabolism and amyloid precursor protein trafficking mediated by ABCG1 may contribute to the accelerated onset of Alzheimer’s disease neuropathology in Down syndrome (PMID:17293612)
- ABCG1 protects against 7beta-HC-induced cell death, an important role in prevention of neurodegenerative and cardiovascular disease. (PMID:17408620)
- These results suggest that the ABCG1-mediated efflux of cholesterol and sphingomyelin (SM) is dependent on the cellular SM level and distribution of cholesterol in the plasma membrane. (PMID:17761632)
- ABCG1 deficiency in pulmonary alveolar proteinosis alveolar macrophages is attributable to the absence of a GM-CSF-mediated PPARgamma pathway. (PMID:17848583)
- No significant gender effect in the capacity of serum from nondyslipidemic subjects to mediate free cholesterol efflux via the ABCG1 transporter pathway was detected (PMID:18057374)
- ABCG1 expression and cholesterol efflux are reduced in patients with type 2 diabetes mellitus (PMID:18490524)
- Overexpression of human ABCG1 does not affect atherosclerosis in fat-fed ApoE-deficient mice. (PMID:18599800)
- Results suggest a causative relationship between ABCG1 function and apoptotic cell death in macrophages and in other cell types. (PMID:18619413)
- The reduction in ABCG1 is associated with impairment in cholesterol efflux and may contribute to accelerated foam cell formation in diabetic patients. (PMID:18640393)
- ABCG1 increases cell membrane free cholesterol pools and changes its rate of desorption into the aqueous phase without enhancing the association with the acceptor. (PMID:18827283)
- Human endothelial cells of the placental barrier efficiently deliver cholesterol to the fetal circulation via ABCA1 and ABCG1. (PMID:19168441)
- Western blot experiments demonstrate that ABCA1 and ABCG1 protein levels are synchronously suppressed by high glucose levels and the w6-unsaturated fatty acid linoleic acid. (PMID:19287193)
- Data describe the requirement of GPS2 for ABCG1 gene transcription and cholesterol efflux from macrophages, and implicate GPS2 in facilitating LXRalpha/beta recruitment to an ABCG1-specific promoter/enhancer unit upon ligand activation. (PMID:19481530)
- a novel ABCG1 -257T>G promoter polymorphism influences CAD severity in Japanese men; ABCG1 transcription activity was significantly lower in the G allele of -257T>G polymorphism (PMID:19556716)
- Results indicated that the ABCG1-mediated cell cholesterol efflux can be efficiently driven by a small discoidal phospholipid-containing particle resembling plasma pre-beta1 HDL. (PMID:19839639)
- ABCG1 mediates oxysterol efflux from oxLDL-loaded macrophages, and the exported oxysterol by ABCG1 pathway can be selectively taken up by hepatocytes. (PMID:19895785)
- results provide evidence that TGF-beta1 up-regulates expressions of ABCA1, ABCG1 and SR-BI through the LXR alpha pathway in THP-1 macrophage-derived foam cells (PMID:20057170)
- In women, significant relationships were found between rs1893590 polymorphisms (ABCG1 gene) and HDLcholesterol plasma concentrations (PMID:20170916)
- AMPK activation prevents ypercholesterolemia-mediated endothelial dysfunction and the underlying mechanism may involve an increased efflux of cholesterol and 7-oxysterols via the ABCG1 pathway. (PMID:20395595)
- ABCG1 is expressed in cultured human keratinocytes and murine epidermis (PMID:20675829)
- Postprandial lipemia enhanced SR-BI and ABCG1-dependent efflux to large HDL2 particles. (PMID:20713650)
- The promotion of cholesterol efflux via ATP-binding cassette transporter G1(ABCG1) results in a reduced inhibitory interaction of endothelial nitric oxide synthase with caveolin-1. (PMID:20798376)
- Two SNPs of the ABCG1is associated with the susceptibility and severity of coronary atherosclerotic disease in Chinese Han population. (PMID:20931526)
Cross-species orthologs
14 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | abcg1 | ENSDARG00000063475 |
| mus_musculus | Abcg1 | ENSMUSG00000024030 |
| rattus_norvegicus | Abcg1 | ENSRNOG00000001158 |
| drosophila_melanogaster | st | FBGN0003515 |
| drosophila_melanogaster | w | FBGN0003996 |
| drosophila_melanogaster | Atet | FBGN0020762 |
| drosophila_melanogaster | CG4822 | FBGN0031220 |
| drosophila_melanogaster | CG31689 | FBGN0031449 |
| drosophila_melanogaster | CG9663 | FBGN0031516 |
| drosophila_melanogaster | CG31121 | FBGN0051121 |
| drosophila_melanogaster | CG32091 | FBGN0052091 |
| caenorhabditis_elegans | WBGENE00006522 | |
| caenorhabditis_elegans | WBGENE00015479 | |
| caenorhabditis_elegans | WBGENE00017179 |
Paralogs (4): ABCG2 (ENSG00000118777), ABCG5 (ENSG00000138075), ABCG8 (ENSG00000143921), ABCG4 (ENSG00000172350)
Protein
Protein identifiers
ATP-binding cassette sub-family G member 1 — P45844 (reviewed: P45844)
Alternative names: ATP-binding cassette transporter 8, White protein homolog
All UniProt accessions (3): P45844, C9JKD9, E9PGV9
UniProt curated annotations — full annotation on UniProt →
Function. Catalyzes the efflux of phospholipids such as sphingomyelin, cholesterol and its oxygenated derivatives like 7beta-hydroxycholesterol and this transport is coupled to hydrolysis of ATP. The lipid efflux is ALB-dependent. Is an active component of the macrophage lipid export complex. Could also be involved in intracellular lipid transport processes. The role in cellular lipid homeostasis may not be limited to macrophages. Prevents cell death by transporting cytotoxic 7beta-hydroxycholesterol.
Subunit / interactions. Homodimer; disulfide-linked. Homooligomer. May form heterodimers with several heterologous partners of the ABCG subfamily. Forms heterodimers with ABCG4. Interacts with CAV1; this interaction regulates ABCG1-mediated cholesterol efflux.
Subcellular location. Endoplasmic reticulum membrane. Golgi apparatus membrane. Cell membrane.
Tissue specificity. Expressed in several tissues. Expressed in macrophages; expression is increased in macrophages from patients with Tangier disease.
Post-translational modifications. Palmitoylation at Cys-315 seems important for trafficking from the endoplasmic reticulum.
Activity regulation. The cholesterol efflux is enhanced by APOA1.
Induction. Strongly induced in monocyte-derived macrophages during cholesterol influx. Conversely, mRNA and protein expression are suppressed by lipid efflux. Induction is mediated by the liver X receptor/retinoid X receptor (LXR/RXR) pathway. Not induced by bacterial lipopolysaccharides (LPS). Repressed by ZNF202.
Similarity. Belongs to the ABC transporter superfamily. ABCG family. Eye pigment precursor importer (TC 3.A.1.204) subfamily.
Isoforms (8)
| UniProt ID | Names | Canonical? |
|---|---|---|
| P45844-1 | 1 | yes |
| P45844-2 | 2, J | |
| P45844-3 | 3, ABDE | |
| P45844-4 | 4, G | |
| P45844-5 | 5, F | |
| P45844-6 | 6, HI | |
| P45844-7 | 7, C | |
| P45844-8 | 8 |
RefSeq proteins (6): NP_004906, NP_058198, NP_997057, NP_997510, NP_997511, NP_997512 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR003439 | ABC_transporter-like_ATP-bd | Domain |
| IPR003593 | AAA+_ATPase | Domain |
| IPR005284 | Pigment_permease/Abcg | Family |
| IPR013525 | ABC2_TM | Domain |
| IPR017871 | ABC_transporter-like_CS | Conserved_site |
| IPR027417 | P-loop_NTPase | Homologous_superfamily |
| IPR043926 | ABCG_dom | Domain |
| IPR050352 | ABCG_transporters | Family |
Pfam: PF00005, PF01061, PF19055
Catalyzed reactions (Rhea), 4 shown:
- a sphingomyelin(in) + ATP + H2O = a sphingomyelin(out) + ADP + phosphate + H(+) (RHEA:38903)
- cholesterol(in) + ATP + H2O = cholesterol(out) + ADP + phosphate + H(+) (RHEA:39051)
- 7beta-hydroxycholesterol(in) + ATP + H2O = 7beta-hydroxycholesterol(out) + ADP + phosphate + H(+) (RHEA:39795)
- an N-(acyl)-sphingosylphosphocholine(in) + ATP + H2O = an N-(acyl)-sphingosylphosphocholine(out) + ADP + phosphate + H(+) (RHEA:46468)
UniProt features (95 total): helix 22, strand 17, mutagenesis site 16, topological domain 7, splice variant 7, turn 7, transmembrane region 6, lipid moiety-binding region 5, sequence conflict 3, domain 2, chain 1, binding site 1, sequence variant 1
Structure
Experimental structures (PDB)
5 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 7R8D | ELECTRON MICROSCOPY | 3.2 |
| 7FDV | ELECTRON MICROSCOPY | 3.26 |
| 7R8C | ELECTRON MICROSCOPY | 3.7 |
| 7R8E | ELECTRON MICROSCOPY | 3.7 |
| 7OZ1 | ELECTRON MICROSCOPY | 4 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P45844-F1 | 81.34 | 0.56 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Ligand- & substrate-binding residues (1): 118–125
Post-translational modifications (5): 30, 154, 315, 394, 406
Mutagenesis-validated functional residues (16):
| Position | Phenotype |
|---|---|
| 30 | no significant effect. |
| 124 | affects atp binding. does not affect efflux of 7beta-hydroxycholesterol. does not affect localization at plasma membrane |
| 154 | no significant effect. |
| 315 | significantly decreases abcg1-mediated cholesterol efflux. |
| 394 | no significant effect. |
| 406 | no significant effect. |
| 491 | significantly reduces interaction with cav1; when associated with a-493. significantly reduces abcg1-mediated cholestero |
| 493 | significantly reduces interaction with cav1; when associated with a-491. significantly reduces abcg1-mediated cholestero |
| 498 | significantly reduces interaction with cav1; when associated with a-499. significantly reduces abcg1-mediated cholestero |
| 498 | does not affect abcg1-mediated cholesterol efflux; when associated with i-499. |
| 498 | dramatically reduces the ability of abcg1 to mediate cholesterol efflux; when associated with i-499. |
| 499 | significantly reduces interaction with cav1; when associated with a-498. significantly reduces abcg1-mediated cholestero |
| 499 | does not affect abcg1-mediated cholesterol efflux; when associated with i-498. |
| 499 | dramatically reduces the ability of abcg1 to mediate cholesterol efflux; when associated with i-498. |
Function
Pathways and Gene Ontology
Reactome pathways
10 pathways
| ID | Pathway |
|---|---|
| R-HSA-1369062 | ABC transporters in lipid homeostasis |
| R-HSA-8964058 | HDL remodeling |
| R-HSA-9029569 | NR1H3 & NR1H2 regulate gene expression linked to cholesterol transport and efflux |
| R-HSA-162582 | Signal Transduction |
| R-HSA-174824 | Plasma lipoprotein assembly, remodeling, and clearance |
| R-HSA-382551 | Transport of small molecules |
| R-HSA-382556 | ABC-family protein mediated transport |
| R-HSA-8963899 | Plasma lipoprotein remodeling |
| R-HSA-9006931 | Signaling by Nuclear Receptors |
| R-HSA-9024446 | NR1H2 and NR1H3-mediated signaling |
MSigDB gene sets: 437 (showing top):
GOBP_CELLULAR_RESPONSE_TO_LIPOPROTEIN_PARTICLE_STIMULUS, GOBP_REGULATION_OF_LIPID_STORAGE, GOBP_STEROL_HOMEOSTASIS, YANG_BREAST_CANCER_ESR1_BULK_UP, GOBP_POSITIVE_REGULATION_OF_AMIDE_METABOLIC_PROCESS, GOBP_POSITIVE_REGULATION_OF_PROTEIN_LOCALIZATION, GOBP_POSITIVE_REGULATION_OF_CHOLESTEROL_EFFLUX, GOBP_REGULATION_OF_CHOLESTEROL_EFFLUX, GOCC_CELL_SURFACE, THEILGAARD_NEUTROPHIL_AT_SKIN_WOUND_DN, LINDGREN_BLADDER_CANCER_CLUSTER_3_DN, GOBP_POSITIVE_REGULATION_OF_STEROL_TRANSPORT, MAHADEVAN_IMATINIB_RESISTANCE_DN, GOBP_POSITIVE_REGULATION_OF_ALCOHOL_BIOSYNTHETIC_PROCESS, GOBP_REGULATION_OF_MEMBRANE_LIPID_DISTRIBUTION
GO Biological Process (26): cholesterol metabolic process (GO:0008203), negative regulation of macrophage derived foam cell differentiation (GO:0010745), positive regulation of cholesterol efflux (GO:0010875), negative regulation of cholesterol storage (GO:0010887), intracellular cholesterol transport (GO:0032367), cholesterol efflux (GO:0033344), phospholipid efflux (GO:0033700), response to lipid (GO:0033993), low-density lipoprotein particle remodeling (GO:0034374), high-density lipoprotein particle remodeling (GO:0034375), glycoprotein transport (GO:0034436), cholesterol homeostasis (GO:0042632), amyloid precursor protein catabolic process (GO:0042987), reverse cholesterol transport (GO:0043691), positive regulation of cholesterol biosynthetic process (GO:0045542), positive regulation of protein secretion (GO:0050714), transmembrane transport (GO:0055085), phospholipid homeostasis (GO:0055091), cellular response to high density lipoprotein particle stimulus (GO:0071403), regulation of cholesterol metabolic process (GO:0090181), positive regulation of amyloid-beta formation (GO:1902004), xenobiotic detoxification by transmembrane export across the plasma membrane (GO:1990961), lipid transport (GO:0006869), negative regulation of lipid storage (GO:0010888), cholesterol transport (GO:0030301), lipid translocation (GO:0034204)
GO Molecular Function (16): ATP binding (GO:0005524), phospholipid binding (GO:0005543), cholesterol binding (GO:0015485), ATP hydrolysis activity (GO:0016887), toxin transmembrane transporter activity (GO:0019534), ABC-type sterol transporter activity (GO:0034041), protein homodimerization activity (GO:0042803), ADP binding (GO:0043531), protein heterodimerization activity (GO:0046982), phosphatidylcholine floppase activity (GO:0090554), cholesterol transfer activity (GO:0120020), floppase activity (GO:0140328), nucleotide binding (GO:0000166), protein binding (GO:0005515), protein dimerization activity (GO:0046983), ABC-type transporter activity (GO:0140359)
GO Cellular Component (12): Golgi membrane (GO:0000139), nucleoplasm (GO:0005654), mitochondrion (GO:0005739), endosome (GO:0005768), endoplasmic reticulum membrane (GO:0005789), Golgi apparatus (GO:0005794), plasma membrane (GO:0005886), external side of plasma membrane (GO:0009897), recycling endosome (GO:0055037), endoplasmic reticulum (GO:0005783), endomembrane system (GO:0012505), membrane (GO:0016020)
Reactome top-level categories
Rollup of top-7 pathways:
| Category | Pathways |
|---|---|
| Transport of small molecules | 2 |
| ABC-family protein mediated transport | 1 |
| Plasma lipoprotein remodeling | 1 |
| NR1H2 and NR1H3-mediated signaling | 1 |
| Plasma lipoprotein assembly, remodeling, and clearance | 1 |
| Signal Transduction | 1 |
| Signaling by Nuclear Receptors | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cholesterol transport | 3 |
| cellular anatomical structure | 3 |
| cytoplasm | 3 |
| intracellular membrane-bounded organelle | 3 |
| endomembrane system | 3 |
| plasma lipoprotein particle remodeling | 2 |
| adenyl ribonucleotide binding | 2 |
| protein dimerization activity | 2 |
| plasma membrane | 2 |
| sterol metabolic process | 1 |
| secondary alcohol metabolic process | 1 |
| macrophage derived foam cell differentiation | 1 |
| regulation of macrophage derived foam cell differentiation | 1 |
| negative regulation of cell differentiation | 1 |
| regulation of cholesterol efflux | 1 |
| positive regulation of cholesterol transport | 1 |
| cholesterol efflux | 1 |
| cholesterol storage | 1 |
| regulation of cholesterol storage | 1 |
| negative regulation of lipid storage | 1 |
| intracellular anatomical structure | 1 |
| intracellular sterol transport | 1 |
| phospholipid transport | 1 |
| response to chemical | 1 |
| protein transport | 1 |
| carbohydrate derivative transport | 1 |
| sterol homeostasis | 1 |
| amyloid precursor protein metabolic process | 1 |
| cholesterol biosynthetic process | 1 |
| regulation of cholesterol biosynthetic process | 1 |
| positive regulation of cholesterol metabolic process | 1 |
| positive regulation of sterol biosynthetic process | 1 |
| positive regulation of alcohol biosynthetic process | 1 |
| protein secretion | 1 |
| regulation of protein secretion | 1 |
| positive regulation of protein transport | 1 |
| positive regulation of secretion by cell | 1 |
| transport | 1 |
| cellular process | 1 |
| lipid homeostasis | 1 |
Protein interactions and networks
STRING
2106 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| ABCG1 | APOA1 | P02647 | 997 |
| ABCG1 | APOE | P02649 | 928 |
| ABCG1 | SREBF2 | Q12772 | 875 |
| ABCG1 | XPR1 | Q9UBH6 | 873 |
| ABCG1 | NR1H3 | Q13133 | 863 |
| ABCG1 | SCARB1 | Q8WTV0 | 848 |
| ABCG1 | SREBF1 | P36956 | 841 |
| ABCG1 | CYP7A1 | P22680 | 813 |
| ABCG1 | SCARB2 | Q14108 | 809 |
| ABCG1 | NR1H2 | P55055 | 782 |
| ABCG1 | NPC1 | O15118 | 775 |
| ABCG1 | PPARG | P37231 | 758 |
| ABCG1 | MYLIP | Q8WY64 | 741 |
| ABCG1 | CETP | P11597 | 737 |
| ABCG1 | APOA2 | P02652 | 723 |
IntAct
3 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| ABCG1 | YARS1 | psi-mi:“MI:0914”(association) | 0.350 |
| ADGRG5 | SLC33A1 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (69): ABCG1 (Affinity Capture-MS), ABCG1 (Affinity Capture-MS), ABCG1 (Affinity Capture-MS), Kif2c (Affinity Capture-MS), Nup214 (Affinity Capture-MS), Tyms (Affinity Capture-MS), Ppfibp1 (Affinity Capture-MS), Ap2a2 (Affinity Capture-MS), Tmem66 (Affinity Capture-MS), LOC100760824 (Affinity Capture-MS), Vps53 (Affinity Capture-MS), Pfas (Affinity Capture-MS), Usp9x (Affinity Capture-MS), Ikbkap (Affinity Capture-MS), Vps16 (Affinity Capture-MS)
ESM2 similar proteins: A0A0M3R8G1, A0A0M4FLW6, A9YWR6, B8ALI0, D3GE74, D4AYW0, H6WS93, H6WS94, O81016, O95259, P29973, P45844, P50530, P93025, Q00194, Q00195, Q03720, Q16281, Q28279, Q2PCF1, Q2QV81, Q5W274, Q5Z9S8, Q60603, Q62398, Q62927, Q63472, Q64343, Q7PC84, Q7PC86, Q7PC87, Q84K47, Q8GU83, Q8GU92, Q8H8V7, Q8RWI9, Q8RXN0, Q90805, Q93YS4, Q9C8J8
Diamond homologs: A0A059J0G5, A0A0M3R8G1, A0A0M4FLW6, A0A1U8QKX8, A2WSH0, A9YWR6, B8ALI0, B9G300, B9G5Y5, C7J6G6, D3GE74, D3ZCM3, F2PLH2, F2RSQ6, F2SHL1, H9BZ66, O24367, O80946, O81016, P10090, P25371, P45843, P45844, P58428, Q05360, Q08234, Q0JLC5, Q16928, Q17320, Q27256, Q2QV81, Q4GZT4, Q4WFQ4, Q54CG0, Q55DA0, Q55DR1, Q55DW4, Q55GB1, Q5MB13, Q64343
SIGNOR signaling
1 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| ABCG1 | up-regulates | HDL_assembly |
Disease & clinical
Clinical variants and AI predictions
ClinVar
146 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 29 |
| Likely pathogenic | 2 |
| Uncertain significance | 68 |
| Likely benign | 12 |
| Benign | 17 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1341200 | GRCh37/hg19 21q11.2-22.3(chr21:15006457-48097372)x3 | Pathogenic |
| 1458311 | NC_000021.8:g.(?43160998)(47865240_?)del | Pathogenic |
| 1526706 | GRCh37/hg19 21q11.2-22.3(chr21:15285841-48097372) | Pathogenic |
| 1526720 | GRCh37/hg19 21q22.2-22.3(chr21:42410406-48097372) | Pathogenic |
| 1703616 | GRCh37/hg19 21q22.3(chr21:42679089-48097372) | Pathogenic |
| 1705932 | GRCh37/hg19 21q11.2-22.3(chr21:14420615-48080926)x3 | Pathogenic |
| 253403 | GRCh37/hg19 21q11.2-22.3(chr21:15410701-48090317)x3 | Pathogenic |
| 253477 | GRCh37/hg19 21q22.2-22.3(chr21:39841248-44652723)x3 | Pathogenic |
| 253512 | GRCh37/hg19 21q11.2-22.3(chr21:15538655-48080926)x1 | Pathogenic |
| 2684910 | GRCh37/hg19 21q11.2-22.3(chr21:15006458-45674637)x3 | Pathogenic |
| 2684914 | GRCh37/hg19 21q22.11-22.3(chr21:33015681-48097372)x3 | Pathogenic |
| 3062420 | GRCh37/hg19 21q21.3-22.3(chr21:30685776-48097372)x3 | Pathogenic |
| 3062421 | GRCh37/hg19 21q22.3(chr21:43603041-48097372)x1 | Pathogenic |
| 3062423 | GRCh37/hg19 21q21.3-22.3(chr21:26929299-48097372)x3 | Pathogenic |
| 3062426 | GRCh37/hg19 21q22.3(chr21:43369956-48097372)x1 | Pathogenic |
| 3062428 | GRCh37/hg19 21q22.12-22.3(chr21:35872675-48097372)x1 | Pathogenic |
| 3062429 | GRCh37/hg19 21q22.11-22.3(chr21:34092685-48097372)x3 | Pathogenic |
| 3242283 | GRCh37/hg19 21q11.2-22.3(chr21:15380398-48100790)x3 | Pathogenic |
| 3391864 | GRCh37/hg19 21q22.11-22.3(chr21:34586759-48097372)x3 | Pathogenic |
| 394099 | GRCh37/hg19 21q22.13-22.3(chr21:38790552-43619940)x1 | Pathogenic |
| 394309 | GRCh37/hg19 21q11.2-22.3(chr21:14771770-48080867)x3 | Pathogenic |
| 443002 | GRCh37/hg19 21q22.13-22.3(chr21:38699545-48097372)x1 | Pathogenic |
| 443072 | GRCh37/hg19 21q22.2-22.3(chr21:41254101-48097372)x1 | Pathogenic |
| 443167 | GRCh37/hg19 21q22.3(chr21:43498966-48097372)x1 | Pathogenic |
| 443979 | GRCh37/hg19 21q11.2-22.3(chr21:15006458-48097372) | Pathogenic |
| 59013 | GRCh37/hg19 21q22.1-22.3(chr21:35527952-44298520)x1 | Pathogenic |
| 625618 | GRCh37/hg19 21q22.2-22.3(chr21:41537095-46914745) | Pathogenic |
| 816508 | GRCh37/hg19 21q22.2-22.3(chr21:42044877-48100155)x3 | Pathogenic |
| 983157 | GRCh37/hg19 21q11.2-22.3(chr21:14629063-48090317)x3 | Pathogenic |
| 2684917 | GRCh37/hg19 21q22.3(chr21:43687354-48097372)x3 | Likely pathogenic |
SpliceAI
2507 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 21:42225670:GA:G | acceptor_gain | 1.0000 |
| 21:42225907:G:GT | donor_gain | 1.0000 |
| 21:42271064:TTGCA:T | acceptor_loss | 1.0000 |
| 21:42271065:TGCA:T | acceptor_loss | 1.0000 |
| 21:42271066:GCA:G | acceptor_loss | 1.0000 |
| 21:42271067:CA:C | acceptor_loss | 1.0000 |
| 21:42271068:A:AG | acceptor_gain | 1.0000 |
| 21:42271068:AG:A | acceptor_gain | 1.0000 |
| 21:42271069:G:GC | acceptor_loss | 1.0000 |
| 21:42271069:G:GG | acceptor_gain | 1.0000 |
| 21:42271069:GG:G | acceptor_gain | 1.0000 |
| 21:42273292:T:A | acceptor_gain | 1.0000 |
| 21:42273293:G:A | acceptor_gain | 1.0000 |
| 21:42273298:T:TA | acceptor_gain | 1.0000 |
| 21:42273299:GCA:G | acceptor_loss | 1.0000 |
| 21:42273300:CAGGG:C | acceptor_gain | 1.0000 |
| 21:42273301:A:AG | acceptor_gain | 1.0000 |
| 21:42273301:A:AT | acceptor_loss | 1.0000 |
| 21:42273301:AG:A | acceptor_gain | 1.0000 |
| 21:42273301:AGG:A | acceptor_gain | 1.0000 |
| 21:42273301:AGGGA:A | acceptor_gain | 1.0000 |
| 21:42273302:G:C | acceptor_loss | 1.0000 |
| 21:42273302:G:GA | acceptor_gain | 1.0000 |
| 21:42273302:GG:G | acceptor_gain | 1.0000 |
| 21:42273302:GGG:G | acceptor_gain | 1.0000 |
| 21:42273302:GGGA:G | acceptor_gain | 1.0000 |
| 21:42273302:GGGAG:G | acceptor_gain | 1.0000 |
| 21:42273424:G:GT | donor_gain | 1.0000 |
| 21:42273432:GATG:G | donor_gain | 1.0000 |
| 21:42273436:G:GG | donor_gain | 1.0000 |
AlphaMissense
4368 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 21:42271135:G:C | G118R | 1.000 |
| 21:42271135:G:T | G118C | 1.000 |
| 21:42271136:G:A | G118D | 1.000 |
| 21:42271145:G:A | G121E | 1.000 |
| 21:42271147:G:C | A122P | 1.000 |
| 21:42271150:G:T | G123W | 1.000 |
| 21:42271151:G:A | G123E | 1.000 |
| 21:42271153:A:C | K124Q | 1.000 |
| 21:42271154:A:T | K124M | 1.000 |
| 21:42271156:T:C | S125P | 1.000 |
| 21:42271157:C:T | S125F | 1.000 |
| 21:42273390:G:C | Q164H | 1.000 |
| 21:42273390:G:T | Q164H | 1.000 |
| 21:42276908:T:C | L184P | 1.000 |
| 21:42282354:G:C | K223N | 1.000 |
| 21:42282354:G:T | K223N | 1.000 |
| 21:42282359:T:C | L225P | 1.000 |
| 21:42282368:C:A | A228E | 1.000 |
| 21:42282377:T:C | L231P | 1.000 |
| 21:42282395:T:A | V237D | 1.000 |
| 21:42282407:A:C | D241A | 1.000 |
| 21:42282407:A:G | D241G | 1.000 |
| 21:42282407:A:T | D241V | 1.000 |
| 21:42282409:G:A | E242K | 1.000 |
| 21:42282410:A:G | E242G | 1.000 |
| 21:42282410:A:T | E242V | 1.000 |
| 21:42282411:G:C | E242D | 1.000 |
| 21:42282411:G:T | E242D | 1.000 |
| 21:42282413:C:A | P243H | 1.000 |
| 21:42282413:C:G | P243R | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000007851 (21:42281900 T>G), RS1000037562 (21:42274925 G>A), RS1000047950 (21:42202643 G>A,T), RS1000051995 (21:42253386 C>G,T), RS1000058752 (21:42220615 G>A), RS1000103598 (21:42244839 G>A), RS1000105698 (21:42207143 A>G), RS1000117733 (21:42217269 G>A), RS1000158577 (21:42215119 G>A), RS1000163422 (21:42253005 C>A,T), RS1000213950 (21:42220574 A>C,G), RS1000214686 (21:42212711 T>A), RS1000272592 (21:42223061 A>C), RS1000304736 (21:42255785 C>A), RS1000323056 (21:42292046 A>G)
Disease associations
OMIM: gene MIM:603076 | disease phenotypes: MIM:190685, MIM:616341, MIM:254800
GenCC curated gene-disease
Mondo (4): Down syndrome (MONDO:0008608), developmental and epileptic encephalopathy, 30 (MONDO:0014595), progressive myoclonus epilepsy (MONDO:0020074), neurodevelopmental disorder (MONDO:0700092)
Orphanet (3): Down syndrome (Orphanet:870), Progressive myoclonic epilepsy type 1 (Orphanet:308), Progressive myoclonic epilepsy (Orphanet:98261)
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
9 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST001356_17 | Gout | 1.000000e-07 |
| GCST002337_7 | Amyotrophic lateral sclerosis (sporadic) | 5.000000e-07 |
| GCST002592_13 | Neuritic plaque | 8.000000e-06 |
| GCST002592_34 | Neuritic plaque | 8.000000e-09 |
| GCST002593_26 | Dementia and core Alzheimer’s disease neuropathologic changes | 7.000000e-06 |
| GCST002593_50 | Dementia and core Alzheimer’s disease neuropathologic changes | 7.000000e-06 |
| GCST003132_5 | Eating disorder in bipolar disorder | 4.000000e-07 |
| GCST003918_1 | Idiopathic osteonecrosis of the femoral head | 2.000000e-07 |
| GCST010242_121 | HDL cholesterol levels | 2.000000e-08 |
EFO canonical traits (4, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0006798 | neuritic plaque measurement |
| EFO:0006801 | Alzheimer’s disease neuropathologic change |
| EFO:1001930 | idiopathic osteonecrosis of the femoral head |
| EFO:0004612 | high density lipoprotein cholesterol measurement |
MeSH disease descriptors (3)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D004314 | Down Syndrome | C10.597.606.360.220; C16.131.077.327; C16.131.260.260; C16.320.180.260 |
| D020191 | Myoclonic Epilepsies, Progressive | C10.228.140.490.375.130.650; C10.228.140.490.493.063.650 |
| D065886 | Neurodevelopmental Disorders | F03.625 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
PharmGKB clinical annotations
1 annotations.
| Variant | Type | Level | Drugs | Phenotypes |
|---|---|---|---|---|
| rs225440 | Toxicity | 3 | fluorouracil;irinotecan;leucovorin | Colorectal Neoplasms |
PharmGKB variants
4 variants.
| Variant | Genes | Level | Score | #Clin annots | Drugs |
|---|---|---|---|---|---|
| rs182694 | ABCG1 | 0.00 | 0 | ||
| rs225440 | ABCG1 | 3 | 3.25 | 1 | fluorouracil;irinotecan;leucovorin |
| rs425215 | ABCG1 | 0.00 | 0 | ||
| rs492338 | ABCG1 | 0.00 | 0 |
GtoPdb / IUPHAR curated pharmacology
(IUPHAR/BPS Guide to Pharmacology — expert-curated)
Target class: transporter — ABCG subfamily
CTD chemical–gene interactions
120 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| T0901317 | decreases reaction, increases expression, increases reaction, affects cotreatment | 7 |
| Valproic Acid | affects expression, affects methylation, increases expression | 7 |
| Resveratrol | affects cotreatment, decreases expression, increases expression, increases reaction, increases activity (+2 more) | 5 |
| Benzo(a)pyrene | affects methylation, decreases expression | 3 |
| Estradiol | affects cotreatment, decreases expression, increases expression | 3 |
| Progesterone | affects cotreatment, decreases expression, increases expression | 3 |
| Cyclosporine | increases expression | 3 |
| triphenyl phosphate | increases expression, affects expression, decreases reaction | 2 |
| bis(tri-n-butyltin)oxide | increases expression | 2 |
| tributyltin | increases expression | 2 |
| perfluorooctanoic acid | increases expression | 2 |
| epigallocatechin gallate | decreases expression | 2 |
| GW 3965 | decreases expression, decreases reaction, increases expression | 2 |
| Alitretinoin | increases expression, affects cotreatment | 2 |
| Air Pollutants | increases abundance, increases expression | 2 |
| Cadmium | increases expression, increases response to substance, increases abundance | 2 |
| Cisplatin | affects expression, decreases expression | 2 |
| Curcumin | increases expression | 2 |
| Nickel | decreases expression | 2 |
| Rifampin | increases expression | 2 |
| Silicon Dioxide | decreases expression | 2 |
| Smoke | increases abundance, increases expression, decreases expression | 2 |
| Tobacco Smoke Pollution | decreases methylation, increases expression | 2 |
| Tretinoin | increases expression | 2 |
| Aflatoxin B1 | decreases methylation, decreases expression | 2 |
| Cadmium Chloride | increases abundance, increases expression | 2 |
| GSK-J4 | increases expression | 1 |
| lly-283 | increases expression | 1 |
| 1,2-linoleoylphosphatidylcholine | decreases expression | 1 |
| 22-hydroxycholesterol | increases expression | 1 |
Cellosaurus cell lines
3 cell lines: 3 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_1252 | HCC1428 | Cancer cell line | Female |
| CVCL_C9DB | HCC1428/Cas9-hyg | Cancer cell line | Female |
| CVCL_YX83 | HCC1428-LTED | Cancer cell line | Female |
Clinical trials (associated diseases)
300 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT01112683 | PHASE4 | COMPLETED | Efficacy and Safety of Memantine Hydrochloride in Enhancing the Cognitive Abilities of Young Adults With Down Syndrome |
| NCT04219280 | PHASE4 | RECRUITING | Evaluating Treatment of ADHD in Children with Down Syndrome |
| NCT04747275 | PHASE4 | TERMINATED | Use of Liquid Stable Levothyroxine in Trisomy 21 Pediatric Patients |
| NCT05458479 | PHASE4 | COMPLETED | Fluoxetine Treatment of Depression in Down Syndrome |
| NCT06911944 | PHASE4 | NOT_YET_RECRUITING | Amyloid Lowering for Alzheimer’s in Down’s With Donanemab Investigation |
| NCT07280468 | PHASE4 | RECRUITING | Endotype DIrected Treatment for OSA in Down Syndrome |
| NCT00056329 | PHASE3 | UNKNOWN | Vitamin E in Aging Persons With Down Syndrome |
| NCT00754013 | PHASE3 | TERMINATED | Evaluating The Efficacy And Safety Of Donepezil Hydrochloride (Aricept) In The Treatment Of The Cognitive Dysfunction Exhibited By Children With Down Syndrome, Aged 6 To 10 |
| NCT00754052 | PHASE3 | TERMINATED | Evaluating The Efficacy And Safety Of Donepezil Hydrochloride (Aricept) In The Treatment Of The Cognitive Dysfunction Exhibited By Children With Down Syndrome, Aged 11 To 17 |
| NCT01190930 | PHASE3 | COMPLETED | Risk-Adapted Chemotherapy in Treating Younger Patients With Newly Diagnosed Standard-Risk Acute Lymphoblastic Leukemia or Localized B-Lineage Lymphoblastic Lymphoma |
| NCT01576705 | PHASE3 | COMPLETED | Efficacy Assessment of Systematic Treatment With Folinic Acid and Thyroid Hormone on Psychomotor Development of Down Syndrome Young Children |
| NCT01594346 | PHASE3 | COMPLETED | Multicenter Vitamin E Trial in Aging Persons With Down Syndrome |
| NCT02521493 | PHASE3 | ACTIVE_NOT_RECRUITING | Response-Based Chemotherapy in Treating Newly Diagnosed Acute Myeloid Leukemia or Myelodysplastic Syndrome in Younger Patients With Down Syndrome |
| NCT03914625 | PHASE3 | ACTIVE_NOT_RECRUITING | A Study to Investigate Blinatumomab in Combination With Chemotherapy in Patients With Newly Diagnosed B-Lymphoblastic Leukemia |
| NCT04801771 | PHASE3 | ACTIVE_NOT_RECRUITING | Effects of Hypoglossal Nerve Stimulation on Cognition and Language in Down Syndrome and Obstructive Sleep Apnea |
| NCT05528549 | PHASE3 | COMPLETED | Blood Flow and Blood Pressure Investigation in Down Syndrome |
| NCT06860373 | PHASE3 | TERMINATED | LIFE-DSR-Biomarker Sub-study of Biomarkers in Down Syndrome Related Alzheimer’s Disease (DS-AD) |
| NCT07135167 | PHASE3 | RECRUITING | Compassionate Use Study of Epi-ON Corneal Collagen Crosslinking Performed Using UVA Exposure on Eyes With Ectatic Corneal Diseases for Subjects With Down Syndrome |
| NCT07232134 | PHASE3 | RECRUITING | The Efficacy of Therapy in Patients With Acute Myeloid Leukemia and Down Syndrome in Russia |
| NCT07234695 | PHASE3 | RECRUITING | LEvetiracetam to Prevent Seizures in Symptomatic Alzheimer’s Disease in Adults With Down Syndrome |
| NCT07238465 | PHASE3 | RECRUITING | Exploring Sympathetic Nervous System Function in Individuals With Down Syndrome |
| NCT00570128 | PHASE2 | COMPLETED | Evaluating The Efficacy And Safety Of Donepezil Hydrochloride (HCl) (Aricept) In Treating Cognitive Dysfunction Exhibited By Children With Down Syndrome |
| NCT00675025 | PHASE2 | TERMINATED | Evaluating The Safety Of Donepezil Hydrochloride (Aricept) For Up To 1 Year In The Treatment Of The Cognitive Dysfunction Exhibited By Children With Down Syndrome - Follow-Up To A 10-Week, Double-Blind, Placebo-Controlled Trial |
| NCT00891917 | PHASE2 | WITHDRAWN | Liq-NOL Efficacy in Pediatric Patients With Down Syndrome |
| NCT00928304 | PHASE2 | COMPLETED | Phase II Study of Florbetaben (BAY94-9172) PET Imaging for Detection/Exclusion of Cerebral β-amyloid. |
| NCT01394796 | PHASE2 | COMPLETED | Egcg, a dyrk1a Inhibitor as Therapeutic Tool for Reversing Cognitive Deficits in Down Syndrome Individuals. |
| NCT01699711 | PHASE2 | COMPLETED | Normalization of dyrk1A and APP Function as an Approach to Improve Cognitive Performance and Decelerate AD Progression in DS Subjects: Epigallocatechin Gallate as Therapeutic Tool |
| NCT01791725 | PHASE2 | COMPLETED | A 4-Week Safety Study of Oral ELND005 in Young Adults With Down Syndrome Without Dementia |
| NCT01975545 | PHASE2 | UNKNOWN | Fluor Varnish With Silver Nanoparticles for Dental Remineralization in Patients With Trisomy 21 |
| NCT02024789 | PHASE2 | COMPLETED | A Study of RG1662 in Adults and Adolescents With Down Syndrome (CLEMATIS) |
| NCT02094053 | PHASE2 | COMPLETED | A Double-blind, Placebo-controlled Comparative Study and Open-label Extension Study to Confirm the Efficacy and Safety of E2020 in Subjects With Down Syndrome Having Regression Symptoms and Disabled Activities of Daily Living. |
| NCT02304302 | PHASE2 | COMPLETED | Down Syndrome Memantine Follow-up Study |
| NCT02484703 | PHASE2 | TERMINATED | A Study of RO5186582 in Down Syndrome Among Children 6 to 11 Years of Age |
| NCT02971254 | PHASE2 | COMPLETED | The Effects of Inhalational Anaesthetics in Cognitive Functions in Down Syndrome Patients |
| NCT03286634 | PHASE2 | ACTIVE_NOT_RECRUITING | ASIA Down Syndrome Acute Lymphoblastic Leukemia 2016 |
| NCT03538925 | PHASE2 | COMPLETED | Building Sentences With Preschoolers Who Use AAC |
| NCT04115878 | PHASE2 | COMPLETED | Medications for Obstructive Sleep Apnea In Children With Down Syndrome |
| NCT04246372 | PHASE2 | COMPLETED | Tofacitinib for Immune Skin Conditions in Down Syndrome |
| NCT04373616 | PHASE2 | WITHDRAWN | A Study of ACI-24 in Adults With Down Syndrome |
| NCT04546399 | PHASE2 | RECRUITING | A Study to Compare Blinatumomab Alone to Blinatumomab With Nivolumab in Patients Diagnosed With First Relapse B-Cell Acute Lymphoblastic Leukemia (B-ALL) |
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): dementia, developmental and epileptic encephalopathy, 30, Down syndrome, eating disorder, progressive myoclonus epilepsy