ABHD11
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Also known as PP1226
Summary
ABHD11 (abhydrolase domain containing 11, HGNC:16407) is a protein-coding gene on chromosome 7q11.23, encoding sn-1-specific diacylglycerol lipase ABHD11 (Q8NFV4). Catalyzes the hydrolysis of diacylglycerol in vitro and may function as a key regulator in lipid metabolism, namely by regulating the intracellular levels of diacylglycerol. 1,2-diacyl-sn-glycerols are the preferred substrate over 1,3-diacyl-sn-glycerols. It is a selective cancer dependency (DepMap: 25.7% of cell lines).
This gene encodes a protein containing an alpha/beta hydrolase fold domain. This gene is deleted in Williams syndrome, a multisystem developmental disorder caused by the deletion of contiguous genes at 7q11.23.
Source: NCBI Gene 83451 — RefSeq curated summary.
At a glance
- GWAS associations: 4
- Clinical variants (ClinVar): 194 total — 111 pathogenic, 5 likely-pathogenic
- Druggable target: yes
- Cancer dependency (DepMap): dependent in 25.7% of screened cell lines
- MANE Select transcript:
NM_148912
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:16407 |
| Approved symbol | ABHD11 |
| Name | abhydrolase domain containing 11 |
| Location | 7q11.23 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | PP1226 |
| Ensembl gene | ENSG00000106077 |
| Ensembl biotype | protein_coding |
| OMIM | 621050 |
| Entrez | 83451 |
Gene structure
Transcript identifiers
Ensembl transcripts: 23 — 13 protein_coding, 4 nonsense_mediated_decay, 3 retained_intron, 3 protein_coding_CDS_not_defined
ENST00000222800, ENST00000357419, ENST00000395147, ENST00000412965, ENST00000437775, ENST00000437891, ENST00000458339, ENST00000462381, ENST00000468331, ENST00000468998, ENST00000474130, ENST00000480445, ENST00000486114, ENST00000497897, ENST00000906765, ENST00000906766, ENST00000906767, ENST00000906768, ENST00000906769, ENST00000906770, ENST00000906771, ENST00000933786, ENST00000933787
RefSeq mRNA: 4 — MANE Select: NM_148912
NM_001145364, NM_001301058, NM_148912, NM_148913
CCDS: CCDS47607, CCDS47608, CCDS5558, CCDS75615
Canonical transcript exons
ENST00000222800 — 6 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001834091 | 73738646 | 73738802 |
| ENSE00003462443 | 73736929 | 73737110 |
| ENSE00003567273 | 73737562 | 73737735 |
| ENSE00003612759 | 73736094 | 73736691 |
| ENSE00003616889 | 73737221 | 73737391 |
| ENSE00003622192 | 73738328 | 73738463 |
Expression profiles
Bgee: expression breadth ubiquitous, 280 present calls, max score 97.55.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 19.5930 / max 457.2273, expressed in 1783 samples.
FANTOM5 promoters (5 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 84326 | 18.0884 | 1776 |
| 84325 | 0.5687 | 235 |
| 84327 | 0.5616 | 310 |
| 84328 | 0.3253 | 146 |
| 84324 | 0.0490 | 22 |
Top tissues by expression
288 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| mucosa of transverse colon | UBERON:0004991 | 97.55 | gold quality |
| metanephros cortex | UBERON:0010533 | 96.82 | gold quality |
| right lobe of thyroid gland | UBERON:0001119 | 96.00 | gold quality |
| left lobe of thyroid gland | UBERON:0001120 | 95.94 | gold quality |
| right uterine tube | UBERON:0001302 | 95.56 | gold quality |
| thyroid gland | UBERON:0002046 | 95.28 | gold quality |
| olfactory segment of nasal mucosa | UBERON:0005386 | 94.67 | gold quality |
| body of pancreas | UBERON:0001150 | 94.26 | gold quality |
| transverse colon | UBERON:0001157 | 93.92 | gold quality |
| rectum | UBERON:0001052 | 93.87 | gold quality |
| pancreatic ductal cell | CL:0002079 | 92.47 | gold quality |
| minor salivary gland | UBERON:0001830 | 92.47 | gold quality |
| small intestine Peyer’s patch | UBERON:0003454 | 92.12 | gold quality |
| epithelium of bronchus | UBERON:0002031 | 91.91 | gold quality |
| bronchus | UBERON:0002185 | 91.74 | gold quality |
| bronchial epithelial cell | CL:0002328 | 91.52 | gold quality |
| adenohypophysis | UBERON:0002196 | 91.45 | gold quality |
| small intestine | UBERON:0002108 | 91.18 | gold quality |
| mouth mucosa | UBERON:0003729 | 90.84 | gold quality |
| duodenum | UBERON:0002114 | 90.57 | gold quality |
| pituitary gland | UBERON:0000007 | 90.56 | gold quality |
| prostate gland | UBERON:0002367 | 90.40 | gold quality |
| colonic mucosa | UBERON:0000317 | 90.26 | gold quality |
| nasal cavity epithelium | UBERON:0005384 | 90.01 | gold quality |
| apex of heart | UBERON:0002098 | 89.89 | gold quality |
| saliva-secreting gland | UBERON:0001044 | 89.77 | gold quality |
| granulocyte | CL:0000094 | 89.72 | gold quality |
| nasal cavity mucosa | UBERON:0001826 | 89.60 | gold quality |
| mucosa of sigmoid colon | UBERON:0004993 | 89.59 | gold quality |
| gall bladder | UBERON:0002110 | 89.36 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 9.97 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
18 targeting ABHD11, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-6778-3P | 99.96 | 67.29 | 2693 |
| HSA-MIR-4524A-3P | 99.72 | 66.85 | 2406 |
| HSA-MIR-12123 | 99.52 | 71.79 | 2990 |
| HSA-MIR-664A-3P | 99.22 | 71.08 | 2696 |
| HSA-MIR-7151-3P | 99.04 | 69.72 | 2370 |
| HSA-MIR-511-5P | 98.97 | 70.94 | 2268 |
| HSA-MIR-6889-3P | 98.84 | 67.35 | 1198 |
| HSA-MIR-367-5P | 98.84 | 67.18 | 902 |
| HSA-MIR-4755-3P | 98.77 | 65.59 | 1915 |
| HSA-MIR-6529-3P | 98.68 | 66.76 | 1020 |
| HSA-MIR-7843-3P | 98.31 | 67.94 | 803 |
| HSA-MIR-5691 | 98.23 | 67.02 | 1335 |
| HSA-MIR-6805-3P | 98.23 | 67.02 | 1334 |
| HSA-MIR-6791-3P | 97.45 | 64.31 | 1123 |
| HSA-MIR-6829-3P | 97.45 | 64.31 | 1137 |
| HSA-MIR-214-5P | 97.34 | 66.50 | 617 |
| HSA-MIR-122-5P | 97.23 | 64.92 | 1024 |
| HSA-MIR-3135A | 96.41 | 65.30 | 494 |
Functional genomics
DepMap (CRISPR cell-line fitness): dependent in 25.7% of screened cell lines.
Literature-anchored findings (GeneRIF, showing 8)
- Abhydrolase domain-containing protein 11 and Esterase D predict the development of distant metastases and the presence of aggressive lung adenocarcinomas. (PMID:21596165)
- ABHD11-AS1 is expressed in gastric cancer tissues and may have a role as a biological marker (PMID:26280398)
- The results demonstrate that human ABHD11 and its yeast homolog YGR031W have a pivotal role in the lipid metabolism. (PMID:28465236)
- that ABHD11-AS1 promotes CRC progression through the miR-1254-WNT11 pathway (PMID:30537177)
- ABHD11, a new diacylglycerol lipase involved in weight gain regulation. (PMID:32579589)
- ABHD11 maintains 2-oxoglutarate metabolism by preserving functional lipoylation of the 2-oxoglutarate dehydrogenase complex. (PMID:32792488)
- Long non-coding RNA ABHD11-AS1 promotes colorectal cancer progression and invasion through targeting the integrin subunit alpha 5/focal adhesion kinase/phosphoinositide 3 kinase/Akt signaling pathway. (PMID:34375304)
- LncRNA ABHD11-AS1 activates EGFR signaling to promote cervical cancer progression by preventing FUS-mediated degradation of ABHD11 mRNA. (PMID:38146687)
Cross-species orthologs
6 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | abhd11 | ENSDARG00000069501 |
| mus_musculus | Abhd11 | ENSMUSG00000040532 |
| rattus_norvegicus | Abhd11 | ENSRNOG00000018910 |
| drosophila_melanogaster | CG2059 | FBGN0029942 |
| drosophila_melanogaster | CG14717 | FBGN0265271 |
| caenorhabditis_elegans | abhd-11.2 | WBGENE00011029 |
Paralogs (12): ABHD5 (ENSG00000011198), ABHD4 (ENSG00000100439), EPHX3 (ENSG00000105131), MEST (ENSG00000106484), ABHD14B (ENSG00000114779), EPHX2 (ENSG00000120915), ABHD8 (ENSG00000127220), BPHL (ENSG00000137274), ABHD6 (ENSG00000163686), EPHX4 (ENSG00000172031), SERHL2 (ENSG00000183569), ABHD14A (ENSG00000248487)
Protein
Protein identifiers
sn-1-specific diacylglycerol lipase ABHD11 — Q8NFV4 (reviewed: Q8NFV4)
Alternative names: Alpha/beta hydrolase domain-containing protein 11, Williams-Beuren syndrome chromosomal region 21 protein
All UniProt accessions (5): Q8NFV4, C9J7Q4, H0YC52, H7BZ58, H7C396
UniProt curated annotations — full annotation on UniProt →
Function. Catalyzes the hydrolysis of diacylglycerol in vitro and may function as a key regulator in lipid metabolism, namely by regulating the intracellular levels of diacylglycerol. 1,2-diacyl-sn-glycerols are the preferred substrate over 1,3-diacyl-sn-glycerols. The enzyme hydrolyzes stearate in preference to palmitate from the sn-1 position of 1,2-diacyl-sn-glycerols. Maintains the functional lipoylation of the 2-oxoglutarate dehydrogenase complex (OGDHc) through its interaction with the OGDHc by preventing the formation of lipoyl adducts. In addition, is also required for the expansion and differentiation of embryonic stem cells (ESCs).
Subunit / interactions. Interacts with OGDH and DLST; this interaction maintains the functional lipoylation of the 2-oxoglutarate dehydrogenase complex.
Subcellular location. Mitochondrion. Mitochondrion matrix.
Tissue specificity. Ubiquitously expressed. Highly expressed in small intestine, prostate and thyroid, while aorta and colon tissues exhibit weak expression levels.
Post-translational modifications. Phosphorylated.
Disease relevance. ABHD11 is located in the Williams-Beuren syndrome (WBS) critical region. WBS results from a hemizygous deletion of several genes on chromosome 7q11.23, thought to arise as a consequence of unequal crossing over between highly homologous low-copy repeat sequences flanking the deleted region.
Miscellaneous. May be produced at very low levels due to a premature stop codon in the mRNA, leading to nonsense-mediated mRNA decay. May be produced at very low levels due to a premature stop codon in the mRNA, leading to nonsense-mediated mRNA decay.
Similarity. Belongs to the AB hydrolase superfamily.
Isoforms (6)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q8NFV4-1 | 1, A | yes |
| Q8NFV4-2 | 2, B | |
| Q8NFV4-3 | 3, C | |
| Q8NFV4-4 | 4, D | |
| Q8NFV4-5 | 5, E | |
| Q8NFV4-6 | 6 |
RefSeq proteins (4): NP_001138836, NP_001287987, NP_683710, NP_683711 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000073 | AB_hydrolase_1 | Domain |
| IPR029058 | AB_hydrolase_fold | Homologous_superfamily |
Pfam: PF00561
Catalyzed reactions (Rhea), 6 shown:
- a 1,2-diacyl-sn-glycerol + H2O = a 2-acylglycerol + a fatty acid + H(+) (RHEA:33275)
- a 1,3-diacyl-sn-glycerol + H2O = a 1-acyl-sn-glycerol + a fatty acid + H(+) (RHEA:38503)
- 1-octadecanoyl-2-(5Z,8Z,11Z,14Z-eicosatetraenoyl)-sn-glycerol + H2O = 2-(5Z,8Z,11Z,14Z-eicosatetraenoyl)-glycerol + octadecanoate + H(+) (RHEA:38507)
- 1,2-didecanoylglycerol + H2O = decanoylglycerol + decanoate + H(+) (RHEA:48596)
- 1-octadecanoyl-2-(9Z-octadecenoyl)-sn-glycerol + H2O = 2-(9Z-octadecenoyl)-glycerol + octadecanoate + H(+) (RHEA:77103)
- 1-octadecanoyl-2-(4Z,7Z,10Z,13Z,16Z,19Z-docosahexaenoyl)-sn-glycerol + H2O = 2-(4Z,7Z,10Z,13Z,16Z,19Z-docosahexaenoyl)-glycerol + octadecanoate + H(+) (RHEA:77107)
UniProt features (18 total): splice variant 8, active site 3, mutagenesis site 2, transit peptide 1, chain 1, region of interest 1, compositionally biased region 1, modified residue 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q8NFV4-F1 | 88.41 | 0.83 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (3): 132 (charge relay system); 228 (charge relay system); 287 (charge relay system)
Post-translational modifications (1): 78
Mutagenesis-validated functional residues (2):
| Position | Phenotype |
|---|---|
| 132 | loss of p-nitrophenyl ester hydrolysis. does not affect mitochondrion location. loss of dlst lipoylation. |
| 287 | loss of dlst lipoylation. |
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 127 (showing top):
STARK_PREFRONTAL_CORTEX_22Q11_DELETION_DN, GOBP_LIPID_METABOLIC_PROCESS, ATF4_Q2, chr7q11, IVANOVA_HEMATOPOIESIS_EARLY_PROGENITOR, CUI_TCF21_TARGETS_2_UP, HUANG_DASATINIB_RESISTANCE_DN, GOCC_OXIDOREDUCTASE_COMPLEX, NUYTTEN_EZH2_TARGETS_DN, GOCC_TRANSFERASE_COMPLEX, CHARAFE_BREAST_CANCER_LUMINAL_VS_MESENCHYMAL_UP, GOCC_MITOCHONDRIAL_MATRIX, GOCC_TRICARBOXYLIC_ACID_CYCLE_HETEROMERIC_ENZYME_COMPLEX, GOMF_HYDROLASE_ACTIVITY_ACTING_ON_ESTER_BONDS, GOMF_CARBOXYLIC_ESTER_HYDROLASE_ACTIVITY
GO Biological Process (1): lipid metabolic process (GO:0006629)
GO Molecular Function (4): lipase activity (GO:0016298), carboxylic ester hydrolase activity (GO:0052689), protein binding (GO:0005515), hydrolase activity (GO:0016787)
GO Cellular Component (3): mitochondrion (GO:0005739), mitochondrial matrix (GO:0005759), oxoglutarate dehydrogenase complex (GO:0045252)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| hydrolase activity, acting on ester bonds | 2 |
| primary metabolic process | 1 |
| binding | 1 |
| catalytic activity | 1 |
| cytoplasm | 1 |
| intracellular membrane-bounded organelle | 1 |
| mitochondrion | 1 |
| intracellular organelle lumen | 1 |
| tricarboxylic acid cycle heteromeric enzyme complex | 1 |
| alpha-ketoacid dehydrogenase complex | 1 |
| transferase complex | 1 |
Protein interactions and networks
STRING
1388 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| ABHD11 | PAFAH2 | Q99487 | 683 |
| ABHD11 | ABHD6 | Q9BV23 | 682 |
| ABHD11 | ABHD10 | Q9NUJ1 | 605 |
| ABHD11 | ABHD1 | Q96SE0 | 588 |
| ABHD11 | ABHD18 | Q0P651 | 581 |
| ABHD11 | ABHD3 | Q8WU67 | 562 |
| ABHD11 | IAH1 | Q2TAA2 | 547 |
| ABHD11 | ROGDI | Q9GZN7 | 534 |
| ABHD11 | ABHD8 | Q96I13 | 532 |
| ABHD11 | ABHD16A | O95870 | 531 |
| ABHD11 | LYPLA1 | O75608 | 530 |
| ABHD11 | LYPLA2 | O95372 | 530 |
| ABHD11 | ABHD16B | Q9H3Z7 | 530 |
| ABHD11 | ABHD4 | Q8TB40 | 529 |
| ABHD11 | ABHD13 | Q7L211 | 527 |
IntAct
18 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| UQCRFS1 | NDUFAB1 | psi-mi:“MI:0914”(association) | 0.530 |
| Prdm16 | ESYT2 | psi-mi:“MI:0914”(association) | 0.350 |
| Mecom | ESYT2 | psi-mi:“MI:0914”(association) | 0.350 |
| ABHD11 | NME4 | psi-mi:“MI:0914”(association) | 0.350 |
| ITM2B | ILVBL | psi-mi:“MI:0914”(association) | 0.350 |
| OSTM1 | ILVBL | psi-mi:“MI:0914”(association) | 0.350 |
| S100A6 | VWA8 | psi-mi:“MI:0914”(association) | 0.350 |
| UQCRFS1 | VWA8 | psi-mi:“MI:0914”(association) | 0.350 |
| YARS2 | VWA8 | psi-mi:“MI:0914”(association) | 0.350 |
| FAHD1 | VWA8 | psi-mi:“MI:0914”(association) | 0.350 |
| STING1 | SMCHD1 | psi-mi:“MI:0914”(association) | 0.350 |
| NIPSNAP3A | NUDT19 | psi-mi:“MI:0914”(association) | 0.350 |
| COL10A1 | PLOD2 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (68): ABHD11 (Affinity Capture-MS), PGM1 (Co-fractionation), NME4 (Affinity Capture-MS), ABHD11 (Affinity Capture-MS), BOLA3 (Affinity Capture-MS), DHRS4 (Affinity Capture-MS), HOGA1 (Affinity Capture-MS), BOLA1 (Affinity Capture-MS), ACAD8 (Affinity Capture-MS), ECH1 (Affinity Capture-MS), CHCHD4 (Affinity Capture-MS), C1QBP (Affinity Capture-MS), ABHD11 (Affinity Capture-MS), ABHD11 (Co-fractionation), ABHD11 (Co-fractionation)
ESM2 similar proteins: A1A4L8, A2BDX3, A4RPM5, A5GFZ6, A6NK58, B4FAT0, B4NXF7, B6TNK6, O19179, O43323, O95396, O95571, P19971, P55203, P85971, Q02846, Q05922, Q08DH8, Q0VFH3, Q14BV6, Q17CA7, Q1WNP0, Q3KQV9, Q3TW96, Q3UQ84, Q561R2, Q58E95, Q5PQQ1, Q5ZKI2, Q61488, Q66JK4, Q6PAT0, Q7PY41, Q86U10, Q8AWD2, Q8NFV4, Q8VBZ0, Q8VDG5, Q923K4, Q96EY9
Diamond homologs: A0A061AYY2, A0A061B0Q2, A0A1E3P8S6, A0A1E3P8S8, A0A1E4S2N7, A0A1E4S2P1, A0A1E5RIW9, A0A1E5RUL9, G8JVR4, K0KPV8, K0KSN3, O06734, O07015, P23974, Q6CLY8, Q8NFV4, Q988D4, W0T4A7, A1A9R4, A1JMX1, A4VQH7, A4W922, A6T799, A7MFY0, A7ZKB4, A7ZYW4, A8GCT3, A8IAD8, A9W3H8, B0SW62, B1IV88, B1LIZ6, B1M5I5, B1X9D0, B1ZB18, B5XXN3, B5YU51, B6I985, B7KWT4, B7LFB9
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
194 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 111 |
| Likely pathogenic | 5 |
| Uncertain significance | 63 |
| Likely benign | 5 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1330192 | GRCh37/hg19 7q11.23(chr7:72717345-74133310)x3 | Pathogenic |
| 146803 | GRCh38/hg38 7q11.23(chr7:73352303-74719008)x3 | Pathogenic |
| 146807 | GRCh38/hg38 7q11.23(chr7:73352303-74719008)x1 | Pathogenic |
| 146838 | GRCh38/hg38 7q11.23(chr7:73352303-74924023)x1 | Pathogenic |
| 147066 | GRCh38/hg38 7q11.23(chr7:72938064-74779028)x3 | Pathogenic |
| 147170 | GRCh38/hg38 7q11.23(chr7:73280574-74924007)x1 | Pathogenic |
| 147629 | GRCh38/hg38 7q11.23(chr7:73312582-74725057)x1 | Pathogenic |
| 148663 | GRCh38/hg38 7q11.23(chr7:73040501-75255046)x3 | Pathogenic |
| 149043 | GRCh38/hg38 7q11.23(chr7:73192369-74779057)x3 | Pathogenic |
| 149044 | GRCh38/hg38 7q11.23(chr7:73192369-74779057)x1 | Pathogenic |
| 149308 | GRCh38/hg38 7q11.23(chr7:73286412-74727989)x1 | Pathogenic |
| 149309 | GRCh38/hg38 7q11.23(chr7:73280574-74727989)x3 | Pathogenic |
| 149310 | GRCh38/hg38 7q11.23(chr7:73271690-74727989)x1 | Pathogenic |
| 150236 | GRCh38/hg38 7q11.23(chr7:73280574-74779057)x3 | Pathogenic |
| 150322 | GRCh38/hg38 7q11.23(chr7:73192369-74869255)x1 | Pathogenic |
| 151015 | GRCh38/hg38 7q11.23(chr7:73286412-74869255)x1 | Pathogenic |
| 151986 | GRCh38/hg38 7q11.23(chr7:73286412-74779057)x1 | Pathogenic |
| 152064 | GRCh38/hg38 7q11.23(chr7:73192369-74883978)x3 | Pathogenic |
| 153242 | GRCh38/hg38 7q11.23(chr7:73175475-74740268)x3 | Pathogenic |
| 153973 | GRCh38/hg38 7q11.23(chr7:73280574-74727918)x1 | Pathogenic |
| 153978 | GRCh38/hg38 7q11.23(chr7:73286522-74727156)x1 | Pathogenic |
| 154080 | GRCh38/hg38 7q11.23(chr7:73286508-74727852)x1 | Pathogenic |
| 154104 | GRCh38/hg38 7q11.21-11.23(chr7:62977085-75415352)x3 | Pathogenic |
| 154347 | GRCh38/hg38 7q11.23(chr7:73280574-74789341)x1 | Pathogenic |
| 154623 | GRCh38/hg38 7q11.23(chr7:73352304-75065728)x3 | Pathogenic |
| 154824 | GRCh38/hg38 7q11.23(chr7:73286412-74758583)x1 | Pathogenic |
| 155565 | GRCh38/hg38 7q11.23(chr7:73304280-74727852)x1 | Pathogenic |
| 160823 | GRCh38/hg38 7q11.23(chr7:73352304-74924037)x1 | Pathogenic |
| 1703588 | GRCh37/hg19 7q11.23(chr7:72589515-74629034) | Pathogenic |
| 1703590 | GRCh37/hg19 7q11.23(chr7:72645013-74142190) | Pathogenic |
SpliceAI
826 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 7:73737733:CAC:C | acceptor_gain | 1.0000 |
| 7:73737736:C:CC | acceptor_gain | 1.0000 |
| 7:73737736:CT:C | acceptor_loss | 1.0000 |
| 7:73738326:A:AC | donor_gain | 1.0000 |
| 7:73738326:AC:A | donor_gain | 1.0000 |
| 7:73738327:C:CC | donor_gain | 1.0000 |
| 7:73738327:CC:C | donor_gain | 1.0000 |
| 7:73738327:CCCTA:C | donor_gain | 1.0000 |
| 7:73738331:ACGG:A | donor_gain | 1.0000 |
| 7:73738332:CGGC:C | donor_gain | 1.0000 |
| 7:73738641:CTGA:C | donor_loss | 1.0000 |
| 7:73738642:TGA:T | donor_loss | 1.0000 |
| 7:73738643:GACCT:G | donor_loss | 1.0000 |
| 7:73738645:CCTCG:C | donor_loss | 1.0000 |
| 7:73736758:G:C | acceptor_gain | 0.9900 |
| 7:73736927:A:AC | donor_gain | 0.9900 |
| 7:73736928:C:CC | donor_gain | 0.9900 |
| 7:73736928:CTG:C | donor_gain | 0.9900 |
| 7:73737560:AC:A | donor_gain | 0.9900 |
| 7:73737561:CC:C | donor_gain | 0.9900 |
| 7:73737561:CCCT:C | donor_gain | 0.9900 |
| 7:73737592:T:A | donor_gain | 0.9900 |
| 7:73737731:AGCAC:A | acceptor_gain | 0.9900 |
| 7:73737732:GCAC:G | acceptor_gain | 0.9900 |
| 7:73737733:CACC:C | acceptor_gain | 0.9900 |
| 7:73737734:AC:A | acceptor_gain | 0.9900 |
| 7:73737735:CC:C | acceptor_gain | 0.9900 |
| 7:73737743:G:C | acceptor_gain | 0.9900 |
| 7:73738332:CGG:C | donor_gain | 0.9900 |
| 7:73738334:G:GA | donor_gain | 0.9900 |
AlphaMissense
2067 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 7:73737712:G:C | N104K | 0.979 |
| 7:73737712:G:T | N104K | 0.979 |
| 7:73737700:G:C | S108R | 0.978 |
| 7:73737700:G:T | S108R | 0.978 |
| 7:73737702:T:G | S108R | 0.978 |
| 7:73737050:A:G | W232R | 0.970 |
| 7:73737050:A:T | W232R | 0.970 |
| 7:73736568:G:C | F313L | 0.966 |
| 7:73736568:G:T | F313L | 0.966 |
| 7:73736570:A:G | F313L | 0.966 |
| 7:73737353:G:C | S167R | 0.962 |
| 7:73737353:G:T | S167R | 0.962 |
| 7:73737355:T:G | S167R | 0.962 |
| 7:73737601:G:C | S141R | 0.961 |
| 7:73737601:G:T | S141R | 0.961 |
| 7:73737603:T:G | S141R | 0.961 |
| 7:73736658:G:C | F283L | 0.958 |
| 7:73736658:G:T | F283L | 0.958 |
| 7:73736660:A:G | F283L | 0.958 |
| 7:73737572:G:T | A151E | 0.947 |
| 7:73736997:G:C | F249L | 0.946 |
| 7:73736997:G:T | F249L | 0.946 |
| 7:73736999:A:G | F249L | 0.946 |
| 7:73737584:G:T | A147D | 0.945 |
| 7:73737602:C:A | S141I | 0.945 |
| 7:73737717:G:T | R103S | 0.941 |
| 7:73738407:A:T | V70D | 0.940 |
| 7:73737585:C:G | A147P | 0.939 |
| 7:73736958:A:C | F262L | 0.938 |
| 7:73736958:A:T | F262L | 0.938 |
dbSNP variants (sampled 300 via entrez): RS1000744587 (7:73737854 G>A), RS1000817951 (7:73736609 C>T), RS1002860930 (7:73740308 C>A), RS1002916512 (7:73740167 G>A), RS1003669079 (7:73736362 C>T), RS1004982371 (7:73740138 G>A), RS1005219563 (7:73735736 C>A,T), RS1005332474 (7:73735965 G>A,C,T), RS1005446907 (7:73736293 G>A), RS1006889276 (7:73736837 C>A,G), RS1007002367 (7:73737084 G>A), RS1007388458 (7:73738177 G>A), RS1009006351 (7:73739375 A>G), RS1009058537 (7:73739081 G>A), RS1009502631 (7:73738071 C>T)
Disease associations
OMIM: gene MIM:621050 | disease phenotypes: MIM:194050, MIM:613729, MIM:193250
GenCC curated gene-disease
Mondo (6): Williams syndrome (MONDO:0008678), distal 7q11.23 microdeletion syndrome (MONDO:0013393), breast ductal adenocarcinoma (MONDO:0005590), autism spectrum disorder (MONDO:0005258), volvulus of midgut (MONDO:0008666), neurodevelopmental disorder (MONDO:0700092)
Orphanet (5): Williams syndrome (Orphanet:904), Distal 7q11.23 microdeletion syndrome (Orphanet:254351), OBSOLETE: Familial intestinal malrotation-facial anomalies syndrome (Orphanet:2454), Familial intestinal malrotation (Orphanet:508410), NON RARE IN EUROPE: Autism (Orphanet:106)
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
4 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST007203_4 | Total cholesterol levels | 2.000000e-06 |
| GCST010725_13 | Malaria | 8.000000e-06 |
| GCST010725_74 | Malaria | 6.000000e-06 |
| GCST010725_91 | Malaria | 7.000000e-06 |
EFO canonical traits (1, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004574 | total cholesterol measurement |
MeSH disease descriptors (4)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D018270 | Carcinoma, Ductal, Breast | C04.557.470.200.025.232.500; C04.557.470.615.132.500; C04.588.180.390; C17.800.090.500.390 |
| D065886 | Neurodevelopmental Disorders | F03.625 |
| D018980 | Williams Syndrome | C10.597.606.360.970; C14.280.484.048.750.535.960; C16.131.260.970; C16.320.180.970 |
| C562456 | Volvulus Of Midgut (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL2189134 (SINGLE PROTEIN)
PharmGKB: 1 entry (VIP=true, CPIC=false)
ChEMBL bioactivities
2 potent at pChembl≥5 of 2 total, top 2 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 9.17 | IC50 | 0.68 | nM | CHEMBL1891894 |
| 7.82 | IC50 | 15 | nM | CHEMBL1891894 |
PubChem BioAssay actives
3 with measured affinity, of 4 total; 3 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| [4-[hydroxy(diphenyl)methyl]triazol-2-yl]-piperidin-1-ylmethanone | 1079557: Inhibition of ABHD11 (unknown origin) | ic50 | 0.0300 | uM |
| (2-ethylpiperidin-1-yl)-[4-[hydroxy(diphenyl)methyl]triazol-2-yl]methanone | 1079557: Inhibition of ABHD11 (unknown origin) | ic50 | 0.0300 | uM |
| (4-tert-butylpiperidin-1-yl)-[4-[hydroxy(diphenyl)methyl]triazol-2-yl]methanone | 1079557: Inhibition of ABHD11 (unknown origin) | ic50 | 0.0300 | uM |
CTD chemical–gene interactions
52 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects cotreatment, increases expression | 4 |
| bisphenol A | decreases expression, increases expression, affects cotreatment | 2 |
| Cadmium Chloride | increases expression | 2 |
| aristolochic acid I | decreases expression | 1 |
| GSK-J4 | decreases expression | 1 |
| sotorasib | affects cotreatment, increases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| beta-lapachone | increases expression | 1 |
| tris(1,3-dichloro-2-propyl)phosphate | decreases expression | 1 |
| sodium arsenite | increases expression | 1 |
| zinc chromate | decreases expression, increases abundance | 1 |
| 2,3-bis(3’-hydroxybenzyl)butyrolactone | affects cotreatment, decreases expression | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| chromium hexavalent ion | decreases expression, increases abundance | 1 |
| tanespimycin | affects cotreatment, decreases expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, increases expression | 1 |
| abrine | increases expression | 1 |
| dorsomorphin | affects cotreatment, increases expression | 1 |
| jinfukang | increases expression | 1 |
| VER 155008 | affects cotreatment, decreases expression | 1 |
| NSC 689534 | affects binding, decreases expression | 1 |
| trametinib | affects cotreatment, increases expression | 1 |
| NVP-BKM120 | affects cotreatment, increases expression | 1 |
| Resveratrol | affects cotreatment, decreases expression | 1 |
| Sunitinib | decreases expression | 1 |
| Air Pollutants | increases abundance, increases expression | 1 |
| Cisplatin | affects response to substance | 1 |
| Copper | affects binding, decreases expression | 1 |
| Coumestrol | affects cotreatment, decreases expression | 1 |
| Demecolcine | decreases expression | 1 |
ChEMBL screening assays
4 unique, capped per target: 2 binding, 2 functional
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL2209099 | Binding | Inhibition of ABHD11 binding to FP-biotin in [12C][14N]-lysine, arginine and [13C6][15N2]-lysine, arginine labeled HEK293T cells at 20 uM after 1 hr by isotopic activity-based protein profiling-MudPIT assay | Discovery and optimization of sulfonyl acrylonitriles as selective, covalent inhibitors of protein phosphatase methylesterase-1. — J Med Chem |
| CHEMBL5723266 | Functional | Affinity Biochemical interaction: (fluorescence-based biochemical gel-based Activity-Based Protein Profiling (ABPP)) EUB0002643a ABHD11 | Affinity Biochemical Literature for EUbOPEN Chemogenomic Library |
Clinical trials (associated diseases)
300 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00768820 | PHASE4 | RECRUITING | The Psychiatric and Cognitive Phenotypes in Velocardiofacial Syndrome |
| NCT04807517 | PHASE4 | COMPLETED | Buspirone Treatment of Anxiety in Williams Syndrome |
| NCT00391261 | PHASE4 | COMPLETED | An Open-label Trial of Metformin for Weight Control of Pediatric Patients on Antipsychotic Medications. |
| NCT01028820 | PHASE4 | COMPLETED | FMRI Brain Activation of Aripiprazole Treatment in Autism Spectrum Disorders |
| NCT01333865 | PHASE4 | COMPLETED | A Study of Memantine Hydrochloride (Namenda®) for Cognitive and Behavioral Impairment in Adults With Autism Spectrum Disorders |
| NCT01337700 | PHASE4 | COMPLETED | Milnacipran in Autism and the Functional Locus Coeruleus and Noradrenergic Model of Autism |
| NCT01695200 | PHASE4 | COMPLETED | Omega-3 Fatty Acids in Autism Spectrum Disorders |
| NCT02096952 | PHASE4 | COMPLETED | Methylphenidate ER Liquid Formulation in Adults With ASD and ADHD |
| NCT02235467 | PHASE4 | COMPLETED | Multisite Study: Parental Training Using Video Modelling to Develop Social Skills in Children With Autism |
| NCT02940574 | PHASE4 | COMPLETED | Neural and Behavioral Effects of Oxytocin in Autism Spectrum Disorders |
| NCT03333629 | PHASE4 | COMPLETED | Promoting Positive Outcomes for Individuals With ASD: Linking Early Detection, Treatment, and Long-term Outcomes |
| NCT03337646 | PHASE4 | COMPLETED | Evaluation of the Effect and Safety of Lisdexamfetamine in Children Aged 6-12 With ADHD and Autism |
| NCT03538431 | PHASE4 | COMPLETED | Improving Driving in Young People With Autism Spectrum Disorders |
| NCT03757585 | PHASE4 | COMPLETED | Natural Treatments for the Management of Emotional Dysregulation in Youth With Non-verbal Learning Disability (NVLD) and/or Autism Spectrum Disorders (ASD) |
| NCT04903353 | PHASE4 | COMPLETED | Pragmatic Trial Comparing Weight Gain in Children With Autism Taking Risperidone Versus Aripiprazole |
| NCT05063656 | PHASE4 | COMPLETED | Biomarker-Driven Pharmacological Treatment of Adolescents With Autism Spectrum Disorder With Gabapentin |
| NCT05146245 | PHASE4 | UNKNOWN | Safety and Pharmacokinetics of Antipsychotics in Children 2: Studying TDM in an RCT |
| NCT05916339 | PHASE4 | RECRUITING | AWARE: Management of ADHD in Autism Spectrum Disorder |
| NCT05954052 | PHASE4 | TERMINATED | A Study of Glutathione in Children With Autism Spectrum Disorder |
| NCT06853665 | PHASE4 | RECRUITING | The TEAM Study - Treatment Efficacy for Autism/Attention Using Mixed Amphetamine |
| NCT07054697 | PHASE4 | COMPLETED | Pilot-RCT With Individualized Homeopathic Treatment in the Children With Autism Spectrum Disorder |
| NCT07161804 | PHASE4 | COMPLETED | Pilot RCT Using Homeopathic Medicines in ASD |
| NCT07439042 | PHASE4 | NOT_YET_RECRUITING | Buspirone for Anxiety in Autistic Youth |
| NCT03414970 | PHASE3 | ACTIVE_NOT_RECRUITING | Hypofractionated Radiation Therapy After Mastectomy in Preventing Recurrence in Patients With Stage IIa-IIIa Breast Cancer |
| NCT01302964 | PHASE3 | COMPLETED | Mirtazapine Treatment of Anxiety in Children and Adolescents With Pervasive Developmental Disorders |
| NCT01706523 | PHASE3 | TERMINATED | Open Label Extension Study of STX209 (Arbaclofen) in Autism Spectrum Disorders |
| NCT01825798 | PHASE3 | COMPLETED | Treatment of Overweight Induced by Antipsychotic Medication in Young People With Autism Spectrum Disorders (ASD) |
| NCT01972074 | PHASE3 | COMPLETED | Behavioral and Neural Response to Memantine in Adolescents With Autism Spectrum Disorder |
| NCT02985749 | PHASE3 | COMPLETED | A Study of Oxytocin for the Treatment of Social Impairment in Individuals With High Functioning Autism Spectrum Disorder |
| NCT03197922 | PHASE3 | COMPLETED | Treatment of Encopresis in Children With Autism Spectrum Disorders |
| NCT03504917 | PHASE3 | TERMINATED | A Study of Balovaptan in Adults With Autism Spectrum Disorder With a 2-Year Open-Label Extension |
| NCT03553875 | PHASE3 | TERMINATED | Memantine for the Treatment of Social Deficits in Youth With Disorders of Impaired Social Interactions |
| NCT03640156 | PHASE3 | COMPLETED | Modulating Socially Adaptive Mirror System Functioning in Autism by Oxytocin |
| NCT03715153 | PHASE3 | TERMINATED | Efficacy and Safety of Bumetanide Oral Liquid Formulation in Children Aged From 2 to Less Than 7 Years Old With Autism Spectrum Disorder. |
| NCT03715166 | PHASE3 | TERMINATED | Efficacy and Safety of Bumetanide Oral Liquid Formulation in Children and Adolescents Aged From 7 to Less Than 18 Years Old With Autism Spectrum Disorder |
| NCT04233502 | PHASE3 | WITHDRAWN | Efficacy and Safety of Slenyto for Insomnia in Children With ASD |
| NCT04578756 | PHASE3 | COMPLETED | Open-Label, Flexible-dose Study to Evaluate the Long-Term Safety and Tolerability of Cariprazine in the Treatment of Pediatric Participants With Schizophrenia, Bipolar I Disorder, or Autism Spectrum Disorder |
| NCT04623398 | PHASE3 | COMPLETED | Effect of Lithium in Patients With Autism Spectrum Disorder and Phelan-McDermid Syndrome (SHANK3 Haploinsufficiency) |
| NCT04725383 | PHASE3 | TERMINATED | Amitriptyline for Repetitive Behaviors in Autism Spectrum Disorders |
| NCT05212493 | PHASE3 | COMPLETED | The Effects of Medical Cannabis in Children With Autistic Spectrum Disorder |
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): breast ductal adenocarcinoma, distal 7q11.23 microdeletion syndrome, volvulus of midgut, Williams syndrome