ABHD12
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Also known as DKFZP434P106dJ965G21.2BEM46L2ABHD12A
Summary
ABHD12 (abhydrolase domain containing 12, lysophospholipase, HGNC:15868) is a protein-coding gene on chromosome 20p11.21, encoding Lysophosphatidylserine lipase ABHD12 (Q8N2K0). Lysophosphatidylserine (LPS) lipase that mediates the hydrolysis of lysophosphatidylserine, a class of signaling lipids that regulates immunological and neurological processes.
This gene encodes an enzyme that catalyzes the hydrolysis of 2-arachidonoyl glycerol (2-AG), the main endocannabinoid lipid transmitter that acts on cannabinoid receptors, CB1 and CB2. The endocannabinoid system is involved in a wide range of physiological processes, including neurotransmission, mood, appetite, pain appreciation, addiction behavior, and inflammation. Mutations in this gene are associated with the neurodegenerative disease, PHARC (polyneuropathy, hearing loss, ataxia, retinitis pigmentosa, and cataract), resulting from an inborn error of endocannabinoid metabolism. Alternatively spliced transcript variants encoding different isoforms have been noted for this gene.
Source: NCBI Gene 26090 — RefSeq curated summary.
At a glance
- Gene–disease (curated): PHARC syndrome (Definitive, ClinGen)
- GWAS associations: 11
- Clinical variants (ClinVar): 640 total — 40 pathogenic, 20 likely-pathogenic
- Phenotypes (HPO): 27
- Druggable target: yes — 2 molecules with ChEMBL bioactivity
- Dosage sensitivity (ClinGen): haploinsufficiency autosomal recessive, triplosensitivity unscored
- MANE Select transcript:
NM_001042472
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:15868 |
| Approved symbol | ABHD12 |
| Name | abhydrolase domain containing 12, lysophospholipase |
| Location | 20p11.21 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | DKFZP434P106, dJ965G21.2, BEM46L2, ABHD12A |
| Ensembl gene | ENSG00000100997 |
| Ensembl biotype | protein_coding |
| OMIM | 613599 |
| Entrez | 26090 |
Gene structure
Transcript identifiers
Ensembl transcripts: 33 — 26 protein_coding, 5 nonsense_mediated_decay, 2 protein_coding_CDS_not_defined
ENST00000339157, ENST00000376542, ENST00000450393, ENST00000461204, ENST00000465694, ENST00000471287, ENST00000481556, ENST00000491682, ENST00000576316, ENST00000671784, ENST00000671858, ENST00000672001, ENST00000672114, ENST00000672258, ENST00000672331, ENST00000672358, ENST00000672406, ENST00000672566, ENST00000672596, ENST00000672871, ENST00000673094, ENST00000673121, ENST00000673227, ENST00000673524, ENST00000851164, ENST00000851165, ENST00000851166, ENST00000938980, ENST00000938981, ENST00000938982, ENST00000969644, ENST00000969645, ENST00000969646
RefSeq mRNA: 2 — MANE Select: NM_001042472
NM_001042472, NM_015600
CCDS: CCDS13172, CCDS42857
Canonical transcript exons
ENST00000339157 — 13 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001470777 | 25300214 | 25300884 |
| ENSE00001955112 | 25390513 | 25390835 |
| ENSE00003017803 | 25303550 | 25303628 |
| ENSE00003040617 | 25314925 | 25314970 |
| ENSE00003042359 | 25302219 | 25302346 |
| ENSE00003213693 | 25317048 | 25317078 |
| ENSE00003493183 | 25309446 | 25309575 |
| ENSE00003531561 | 25323325 | 25323430 |
| ENSE00003554654 | 25320199 | 25320318 |
| ENSE00003600111 | 25339227 | 25339351 |
| ENSE00003619140 | 25307966 | 25308045 |
| ENSE00003786189 | 25306833 | 25306915 |
| ENSE00003791599 | 25308457 | 25308494 |
Expression profiles
Bgee: expression breadth ubiquitous, 256 present calls, max score 98.59.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 39.1630 / max 576.7269, expressed in 1822 samples.
FANTOM5 promoters (7 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 186797 | 38.1913 | 1822 |
| 186790 | 0.2482 | 131 |
| 186793 | 0.2327 | 67 |
| 186795 | 0.1944 | 50 |
| 186792 | 0.1506 | 62 |
| 186794 | 0.0781 | 41 |
| 186791 | 0.0676 | 27 |
Top tissues by expression
256 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| C1 segment of cervical spinal cord | UBERON:0006469 | 98.59 | gold quality |
| prefrontal cortex | UBERON:0000451 | 98.42 | gold quality |
| spinal cord | UBERON:0002240 | 98.37 | gold quality |
| left lobe of thyroid gland | UBERON:0001120 | 98.19 | gold quality |
| body of pancreas | UBERON:0001150 | 98.19 | gold quality |
| right lobe of thyroid gland | UBERON:0001119 | 98.17 | gold quality |
| right frontal lobe | UBERON:0002810 | 97.99 | gold quality |
| thyroid gland | UBERON:0002046 | 97.91 | gold quality |
| lower esophagus mucosa | UBERON:0035834 | 97.90 | gold quality |
| anterior cingulate cortex | UBERON:0009835 | 97.85 | gold quality |
| nucleus accumbens | UBERON:0001882 | 97.77 | gold quality |
| Brodmann (1909) area 9 | UBERON:0013540 | 97.77 | gold quality |
| putamen | UBERON:0001874 | 97.66 | gold quality |
| hypothalamus | UBERON:0001898 | 97.47 | gold quality |
| substantia nigra | UBERON:0002038 | 97.41 | gold quality |
| lateral nuclear group of thalamus | UBERON:0002736 | 97.35 | gold quality |
| right hemisphere of cerebellum | UBERON:0014890 | 97.28 | gold quality |
| tibial nerve | UBERON:0001323 | 97.27 | gold quality |
| caudate nucleus | UBERON:0001873 | 97.27 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 97.24 | gold quality |
| cerebellar cortex | UBERON:0002129 | 97.23 | gold quality |
| pancreas | UBERON:0001264 | 97.18 | gold quality |
| amygdala | UBERON:0001876 | 97.18 | gold quality |
| midbrain | UBERON:0001891 | 97.09 | gold quality |
| pons | UBERON:0000988 | 97.03 | gold quality |
| frontal cortex | UBERON:0001870 | 97.03 | gold quality |
| stromal cell of endometrium | CL:0002255 | 97.02 | gold quality |
| islet of Langerhans | UBERON:0000006 | 97.02 | gold quality |
| ileal mucosa | UBERON:0000331 | 97.02 | gold quality |
| neocortex | UBERON:0001950 | 96.70 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 9.13 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
22 targeting ABHD12, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-205-3P | 99.92 | 69.92 | 3165 |
| HSA-MIR-182-5P | 99.87 | 74.03 | 2589 |
| HSA-MIR-148A-3P | 99.74 | 73.77 | 1700 |
| HSA-MIR-148B-3P | 99.74 | 73.75 | 1700 |
| HSA-MIR-152-3P | 99.74 | 73.75 | 1703 |
| HSA-MIR-4276 | 99.56 | 67.66 | 2514 |
| HSA-MIR-4528 | 99.18 | 69.77 | 1936 |
| HSA-MIR-4717-3P | 99.06 | 66.34 | 1072 |
| HSA-MIR-412-3P | 98.86 | 66.89 | 712 |
| HSA-MIR-6754-3P | 98.84 | 66.60 | 889 |
| HSA-MIR-1301-3P | 98.64 | 68.27 | 1071 |
| HSA-MIR-5047 | 98.64 | 68.62 | 1035 |
| HSA-MIR-4290 | 98.51 | 65.17 | 907 |
| HSA-MIR-7852-3P | 98.37 | 67.98 | 823 |
| HSA-MIR-6882-3P | 98.23 | 67.01 | 1119 |
| HSA-MIR-7843-5P | 98.12 | 65.26 | 1421 |
| HSA-MIR-4632-5P | 97.82 | 65.38 | 1470 |
| HSA-MIR-4660 | 97.79 | 67.44 | 1328 |
| HSA-MIR-22-5P | 97.67 | 68.92 | 1355 |
| HSA-MIR-585-5P | 97.54 | 69.02 | 955 |
| HSA-MIR-4288 | 97.11 | 67.23 | 1636 |
| HSA-MIR-4703-3P | 96.68 | 68.61 | 545 |
Functional genomics
ClinGen dosage: haploinsufficiency 30 (autosomal recessive), triplosensitivity Not yet evaluated (unscored). ClinGen Gene Dosage Map
Literature-anchored findings (GeneRIF, showing 16)
- Mutations in the ABHD12 gene cause polyneuropathy, hearing loss, ataxia, retinitis pigmentosa, and cataract disease. (PMID:20797687)
- After the identification of the ABHD12 mutation in this family, one patient underwent neurological examination which revealed ataxia, but no polyneuropathy (PMID:22938382)
- Data show that the three hydrolases are genuine MAG lipases; medium-chain saturated MAGs were the best substrates for hABHD6 and hMAGL, whereas hABHD12 preferred the 1 (3)- and 2-isomers of arachidonoylglycerol. (PMID:22969151)
- ABHD12 mutations are not a frequent cause of ataxia at least in Southern Italy (PMID:23490117)
- This is the first report of compound heterozygosity in PHARC and the first study to describe how a mutation might affect ABHD12 expression and function. (PMID:24027063)
- Null mutations in the ABHD12 gene lead to PHARC syndrome, a neurodegenerative disease including polyneuropathy, hearing loss, cerebellar ataxia, RP, and early-onset cataract. Our study allowed us to report 5 new mutations in ABHD12. (PMID:24697911)
- ABHD12 mutation in 2 PHARC (Polyneuropathy, Hearing Loss, Ataxia, Retinitis Pigmentosa, And Cataract)patients who suffered from deaf-blindness and dysfunctional central and peripheral nervous systems. (PMID:25743180)
- Study identified a new missense mutation, p.T253R, in ABHD12, which is functionally linked to the neurodegenerative disease PHARC (polyneuropathy, hearing loss, ataxia, retinitis pigmentosa, and early-onset cataract), as demonstrated by its deactivation of monoacylglycerol lipase activity and inability to rescue zebrafish abhd12 knockdown phenotypes. (PMID:27890673)
- This study presented the various mutation of ABHD12 responsible for PHARC syndrome. (PMID:28448692)
- ABHD12 is enriched on the endoplasmic reticulum membrane, where most of the very-long-chain fatty acids are biosynthesized in cells. (PMID:30237167)
- Findings in Usher Syndrome predicted the potential function of this gene in the development of hearing and vision loss, particularly with regard to impaired signal transmission, and identified a novel nonsense variant to expand the variant spectrum in ABHD12. (PMID:30974196)
- ABHD12 plays a crucial role in cell proliferation, migration, and invasion of breast cancer cells. (PMID:32366405)
- Mapping the Neuroanatomy of ABHD16A, ABHD12, and Lysophosphatidylserines Provides New Insights into the Pathophysiology of the Human Neurological Disorder PHARC. (PMID:32462874)
- Expanding the clinical phenotype in patients with disease causing variants associated with atypical Usher syndrome. (PMID:34223797)
- The Phenotypic Spectrum of Patients with PHARC Syndrome Due to Variants in ABHD12: An Ophthalmic Perspective. (PMID:34573385)
- Genotype-phenotype spectrum and correlation of PHARC Syndrome due to pathogenic ABHD12 variants. (PMID:39123271)
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | abhd12 | ENSDARG00000071004 |
| mus_musculus | Abhd12 | ENSMUSG00000032046 |
| rattus_norvegicus | Abhd12 | ENSRNOG00000036934 |
| caenorhabditis_elegans | WBGENE00008497 | |
| caenorhabditis_elegans | WBGENE00008498 |
Paralogs (7): ABHD17B (ENSG00000107362), ABHD17A (ENSG00000129968), ABHD12B (ENSG00000131969), ABHD17C (ENSG00000136379), ABHD13 (ENSG00000139826), ABHD16B (ENSG00000183260), ABHD16A (ENSG00000204427)
Protein
Protein identifiers
Lysophosphatidylserine lipase ABHD12 — Q8N2K0 (reviewed: Q8N2K0)
Alternative names: 2-arachidonoylglycerol hydrolase ABHD12, Abhydrolase domain-containing protein 12, Monoacylglycerol lipase ABHD12, Oxidized phosphatidylserine lipase ABHD12
All UniProt accessions (21): Q8N2K0, A0A5F9ZGT4, A0A5F9ZGW7, A0A5F9ZGZ9, A0A5F9ZH28, A0A5F9ZH49, A0A5F9ZH71, A0A5F9ZHB5, A0A5F9ZHE8, A0A5F9ZHF0, A0A5F9ZHG5, A0A5F9ZHH2, A0A5F9ZHM3, A0A5F9ZHQ0, A0A5F9ZHQ8, I3L1V0, I3L206, I3L294, I3L380, I3L440, Q5T712
UniProt curated annotations — full annotation on UniProt →
Function. Lysophosphatidylserine (LPS) lipase that mediates the hydrolysis of lysophosphatidylserine, a class of signaling lipids that regulates immunological and neurological processes. Represents a major lysophosphatidylserine lipase in the brain, thereby playing a key role in the central nervous system. Also able to hydrolyze oxidized phosphatidylserine; oxidized phosphatidylserine is produced in response to severe inflammatory stress and constitutes a proapoptotic ’eat me’ signal. Also has monoacylglycerol (MAG) lipase activity: hydrolyzes 2-arachidonoylglycerol (2-AG), thereby acting as a regulator of endocannabinoid signaling pathways. Has a strong preference for very-long-chain lipid substrates; substrate specificity is likely due to improved catalysis and not improved substrate binding.
Subcellular location. Endoplasmic reticulum membrane.
Post-translational modifications. Glycosylated; glycosylation is required for optimal activity.
Disease relevance. Polyneuropathy, hearing loss, ataxia, retinitis pigmentosa, and cataract (PHARC) [MIM:612674] A slowly progressive neurologic disorder with a variable phenotype resembling Refsum disease. Clinical features include sensorineural hearing loss, visual problems related to cataracts, retinitis pigmentosa, pes cavus, ataxic and/or spastic gait disturbances with a progressive sensorimotor peripheral neuropathy. Other features include hyporeflexia, hyperreflexia, extensor plantar responses. The disease is caused by variants affecting the gene represented in this entry.
Activity regulation. Selectively inhibited by DO264 (N-3-pyridyl-N’-(1-[3-chloro-4-{2-chloro-4-(trifluoromethoxy)phenoxy}pyridine-2-yl]piperidin-4-yl)thiourea). Reversibly inhibited by triterpenoids, but with rather low potency.
Similarity. Belongs to the serine esterase family.
Isoforms (3)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q8N2K0-1 | 1 | yes |
| Q8N2K0-2 | 2 | |
| Q8N2K0-3 | 3 |
RefSeq proteins (2): NP_001035937, NP_056415 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000073 | AB_hydrolase_1 | Domain |
| IPR029058 | AB_hydrolase_fold | Homologous_superfamily |
Pfam: PF00561
Catalyzed reactions (Rhea), 12 shown:
- 2-(5Z,8Z,11Z,14Z-eicosatetraenoyl)-glycerol + H2O = glycerol + (5Z,8Z,11Z,14Z)-eicosatetraenoate + H(+) (RHEA:26132)
- 1-octadecanoylglycerol + H2O = octadecanoate + glycerol + H(+) (RHEA:38363)
- 1-(9Z-octadecenoyl)-glycerol + H2O = glycerol + (9Z)-octadecenoate + H(+) (RHEA:38487)
- 2-(9Z-octadecenoyl)-glycerol + H2O = glycerol + (9Z)-octadecenoate + H(+) (RHEA:38491)
- 1-hexadecanoylglycerol + H2O = glycerol + hexadecanoate + H(+) (RHEA:39959)
- 2-hexadecanoylglycerol + H2O = glycerol + hexadecanoate + H(+) (RHEA:39963)
- 1-(9Z-octadecenoyl)-sn-glycero-3-phospho-L-serine + H2O = sn-glycero-3-phospho-L-serine + (9Z)-octadecenoate + H(+) (RHEA:40499)
- 1-(9Z-octadecenoyl)-sn-glycero-3-phosphoethanolamine + H2O = sn-glycero-3-phosphoethanolamine + (9Z)-octadecenoate + H(+) (RHEA:40895)
- 1-(9Z-octadecenoyl)-sn-glycero-3-phosphocholine + H2O = 1-(9Z-octadecenoyl)-sn-glycerol + phosphocholine + H(+) (RHEA:41091)
- 1-tetradecanoylglycerol + H2O = tetradecanoate + glycerol + H(+) (RHEA:44312)
- 1-dodecanoylglycerol + H2O = dodecanoate + glycerol + H(+) (RHEA:44316)
- 1-decanoylglycerol + H2O = decanoate + glycerol + H(+) (RHEA:44320)
UniProt features (24 total): sequence variant 9, mutagenesis site 3, active site 3, topological domain 2, sequence conflict 2, splice variant 2, chain 1, transmembrane region 1, glycosylation site 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q8N2K0-F1 | 85.60 | 0.65 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (3): 246 (nucleophile); 333 (charge relay system); 372 (charge relay system)
Glycosylation sites (1): 123
Mutagenesis-validated functional residues (3):
| Position | Phenotype |
|---|---|
| 246 | loss of lipase activity. |
| 333 | loss of 2-arachidonoyglycerol hydrolase activity. |
| 372 | loss of 2-arachidonoyglycerol hydrolase activity. |
Function
Pathways and Gene Ontology
Reactome pathways
8 pathways
| ID | Pathway |
|---|---|
| R-HSA-426048 | Arachidonate production from DAG |
| R-HSA-109582 | Hemostasis |
| R-HSA-114508 | Effects of PIP2 hydrolysis |
| R-HSA-162582 | Signal Transduction |
| R-HSA-372790 | Signaling by GPCR |
| R-HSA-388396 | GPCR downstream signalling |
| R-HSA-416476 | G alpha (q) signalling events |
| R-HSA-76002 | Platelet activation, signaling and aggregation |
MSigDB gene sets: 251 (showing top):
GOBP_PHOSPHOLIPID_METABOLIC_PROCESS, GOBP_BEHAVIOR, GOBP_INFLAMMATORY_RESPONSE, REACTOME_PLATELET_ACTIVATION_SIGNALING_AND_AGGREGATION, ZHAN_MULTIPLE_MYELOMA_MF_UP, GOBP_ADULT_BEHAVIOR, GOBP_MODIFIED_AMINO_ACID_CATABOLIC_PROCESS, GOBP_MACROMOLECULE_DEACYLATION, GOBP_ORGANOPHOSPHATE_METABOLIC_PROCESS, GOBP_LONG_CHAIN_FATTY_ACID_METABOLIC_PROCESS, GOBP_MONOCARBOXYLIC_ACID_METABOLIC_PROCESS, GOBP_ADULT_LOCOMOTORY_BEHAVIOR, GOBP_GLYCEROLIPID_METABOLIC_PROCESS, REACTOME_EFFECTS_OF_PIP2_HYDROLYSIS, GOBP_NEUTRAL_LIPID_CATABOLIC_PROCESS
GO Biological Process (11): phosphatidylserine catabolic process (GO:0006660), adult walking behavior (GO:0007628), phospholipid catabolic process (GO:0009395), response to auditory stimulus (GO:0010996), arachidonate metabolic process (GO:0019369), acylglycerol catabolic process (GO:0046464), glycerophospholipid catabolic process (GO:0046475), regulation of inflammatory response (GO:0050727), monoacylglycerol catabolic process (GO:0052651), lipid metabolic process (GO:0006629), macromolecule depalmitoylation (GO:0098734)
GO Molecular Function (6): glycerophospholipase activity (GO:0004620), phosphatidylcholine lysophospholipase A1 activity (GO:0004622), palmitoyl-(protein) hydrolase activity (GO:0008474), monoacylglycerol lipase activity (GO:0047372), phosphatidylserine lysophospholipase A1 activity (GO:0120560), hydrolase activity (GO:0016787)
GO Cellular Component (7): endoplasmic reticulum membrane (GO:0005789), plasma membrane (GO:0005886), membrane (GO:0016020), AMPA glutamate receptor complex (GO:0032281), dendrite cytoplasm (GO:0032839), cytoplasm (GO:0005737), endoplasmic reticulum (GO:0005783)
Reactome top-level categories
Rollup of top-7 pathways:
| Category | Pathways |
|---|---|
| Effects of PIP2 hydrolysis | 1 |
| G alpha (q) signalling events | 1 |
| Platelet activation, signaling and aggregation | 1 |
| Signal Transduction | 1 |
| Signaling by GPCR | 1 |
| GPCR downstream signalling | 1 |
| Hemostasis | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| glycerolipid catabolic process | 2 |
| lysophospholipase A1 activity | 2 |
| cellular anatomical structure | 2 |
| phosphatidylserine metabolic process | 1 |
| modified amino acid catabolic process | 1 |
| glycerophospholipid catabolic process | 1 |
| adult locomotory behavior | 1 |
| walking behavior | 1 |
| phospholipid metabolic process | 1 |
| lipid catabolic process | 1 |
| organophosphate catabolic process | 1 |
| response to mechanical stimulus | 1 |
| long-chain fatty acid metabolic process | 1 |
| icosanoid metabolic process | 1 |
| unsaturated fatty acid metabolic process | 1 |
| olefinic compound metabolic process | 1 |
| acylglycerol metabolic process | 1 |
| neutral lipid catabolic process | 1 |
| glycerophospholipid metabolic process | 1 |
| phospholipid catabolic process | 1 |
| inflammatory response | 1 |
| regulation of defense response | 1 |
| regulation of response to external stimulus | 1 |
| monoacylglycerol metabolic process | 1 |
| acylglycerol catabolic process | 1 |
| primary metabolic process | 1 |
| macromolecule deacylation | 1 |
| phospholipase activity | 1 |
| thiolester hydrolase activity | 1 |
| palmitoyl hydrolase activity | 1 |
| catalytic activity, acting on a protein | 1 |
| lipase activity | 1 |
| carboxylic ester hydrolase activity | 1 |
| catalytic activity | 1 |
| organelle membrane | 1 |
| nuclear outer membrane-endoplasmic reticulum membrane network | 1 |
| endoplasmic reticulum subcompartment | 1 |
| membrane | 1 |
| cell periphery | 1 |
| ionotropic glutamate receptor complex | 1 |
Protein interactions and networks
STRING
1026 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| ABHD12 | ABHD6 | Q9BV23 | 918 |
| ABHD12 | ABHD16A | O95870 | 852 |
| ABHD12 | MGLL | Q99685 | 832 |
| ABHD12 | FAAH | O00519 | 823 |
| ABHD12 | NAPEPLD | Q6IQ20 | 800 |
| ABHD12 | DAGLA | Q9Y4D2 | 783 |
| ABHD12 | DAGLB | Q8NCG7 | 744 |
| ABHD12 | ABHD4 | Q8TB40 | 739 |
| ABHD12 | GPR55 | Q9Y2T6 | 676 |
| ABHD12 | NAAA | Q02083 | 615 |
| ABHD12 | GDE1 | Q9NZC3 | 610 |
| ABHD12 | CNR1 | P21554 | 598 |
| ABHD12 | ABHD3 | Q8WU67 | 579 |
| ABHD12 | GPR18 | Q14330 | 578 |
| ABHD12 | FAAH2 | Q6GMR7 | 570 |
IntAct
115 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| TRDN | TMEM223 | psi-mi:“MI:0914”(association) | 0.640 |
| ABHD12 | GPR182 | psi-mi:“MI:0915”(physical association) | 0.550 |
| CXCR4 | TMEM120B | psi-mi:“MI:0914”(association) | 0.530 |
| SLC39A4 | TMEM120B | psi-mi:“MI:0914”(association) | 0.530 |
| PEX19 | FAM20B | psi-mi:“MI:0914”(association) | 0.530 |
| NCEH1 | CLGN | psi-mi:“MI:0914”(association) | 0.530 |
| PEX19 | MYO1D | psi-mi:“MI:0914”(association) | 0.530 |
| ECEL1 | CLGN | psi-mi:“MI:0914”(association) | 0.530 |
| SLC6A8 | ILVBL | psi-mi:“MI:0914”(association) | 0.530 |
| NRAS | ESYT2 | psi-mi:“MI:2364”(proximity) | 0.480 |
| ESYT2 | psi-mi:“MI:0914”(association) | 0.350 | |
| E5 | ESYT2 | psi-mi:“MI:0914”(association) | 0.350 |
| PGRMC1 | psi-mi:“MI:0914”(association) | 0.350 | |
| HAX1 | psi-mi:“MI:0914”(association) | 0.350 | |
| BVLF1 | VWA8 | psi-mi:“MI:0914”(association) | 0.350 |
| TNFRSF10B | psi-mi:“MI:0914”(association) | 0.350 | |
| HSCB | RBP5 | psi-mi:“MI:0914”(association) | 0.350 |
| MAD2L2 | psi-mi:“MI:0914”(association) | 0.350 | |
| AP3B1 | psi-mi:“MI:0914”(association) | 0.350 | |
| M | psi-mi:“MI:0914”(association) | 0.350 | |
| rep | CEBPZOS | psi-mi:“MI:0914”(association) | 0.350 |
| ATG2A | ESYT2 | psi-mi:“MI:0914”(association) | 0.350 |
| IRAK1 | ILVBL | psi-mi:“MI:0914”(association) | 0.350 |
| STK32C | ILVBL | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (155): ABHD12 (Affinity Capture-MS), ABHD12 (Affinity Capture-MS), DPP9 (Affinity Capture-MS), ABHD12 (Proximity Label-MS), ABHD12 (Proximity Label-MS), ABHD12 (Affinity Capture-MS), DPP9 (Affinity Capture-MS), ABHD12 (Affinity Capture-MS), ABHD12 (Affinity Capture-MS), ABHD12 (Affinity Capture-MS), ABHD12 (Affinity Capture-RNA), ABHD12 (Affinity Capture-MS), ABHD12 (Affinity Capture-MS), ABHD12 (Affinity Capture-MS), ABHD12 (Proximity Label-MS)
ESM2 similar proteins: A0A2R8QFQ6, A0A2R8RWN9, D3Z7P3, E9PV86, G3MWR8, O54865, O60907, O89050, O94925, P13264, P16068, P20595, P58058, Q02153, Q08211, Q12800, Q13042, Q14722, Q28141, Q28D01, Q3MHJ2, Q3ULA2, Q4R8H1, Q4ZHR9, Q5R874, Q5RB35, Q5SP67, Q5SRY7, Q5ZHN3, Q6DN14, Q7RTP6, Q7T2U9, Q7Z6J6, Q8BTG7, Q8C6G8, Q8CJ19, Q8K4Q0, Q8N122, Q8N2K0, Q8R349
Diamond homologs: B4F753, G2JHL6, O34705, P29368, P42840, P9WLC6, P9WLC7, Q08C93, Q08DW9, Q32LS6, Q4R766, Q5ZIN0, Q5ZJ01, Q5ZJL8, Q6AYT7, Q6DCC5, Q6DEY3, Q6IRP4, Q7Z5M8, Q80UX8, Q8N2K0, Q99390, Q99LR1, Q5E9H9, Q8XA81, Q8ZN39, P54069, Q7L211, Q8RXP6, A0A084R1K6, A5PKD9, B5DFK7, P0CU85, P77538, Q21221, Q2HJ19, Q5XIJ5, Q5ZJX1, Q6DD70, Q6GL10
SIGNOR signaling
0 interactions.
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 132 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| R-HSA-425366 | 5 | 11.3× | 8e-03 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| zinc ion transmembrane transport | 5 | 32.8× | 2e-04 |
| intracellular zinc ion homeostasis | 5 | 22.5× | 6e-04 |
| establishment of localization in cell | 6 | 9.0× | 9e-03 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
640 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 40 |
| Likely pathogenic | 20 |
| Uncertain significance | 274 |
| Likely benign | 213 |
| Benign | 48 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1072225 | NC_000020.10:g.(?25371129)(25371339_?)del | Pathogenic |
| 1072226 | NC_000020.10:g.(?25295561)(25300954_?)del | Pathogenic |
| 1073481 | NM_001042472.3(ABHD12):c.316+2T>A | Pathogenic |
| 1210006 | NM_001042472.3(ABHD12):c.337_338del (p.Asp113fs) | Pathogenic |
| 1322604 | NM_001042472.3(ABHD12):c.1015C>T (p.Gln339Ter) | Pathogenic |
| 1356753 | NM_001042472.3(ABHD12):c.729G>A (p.Trp243Ter) | Pathogenic |
| 1380411 | NM_001042472.3(ABHD12):c.1122C>A (p.Tyr374Ter) | Pathogenic |
| 1389869 | NM_001042472.3(ABHD12):c.205_206del (p.Trp69fs) | Pathogenic |
| 1429666 | NM_001042472.3(ABHD12):c.738_748del (p.Leu247fs) | Pathogenic |
| 143235 | NM_001042472.3(ABHD12):c.1116C>G (p.His372Gln) | Pathogenic |
| 143236 | NM_001042472.3(ABHD12):c.477G>A (p.Trp159Ter) | Pathogenic |
| 1433990 | NM_001042472.3(ABHD12):c.784C>T (p.Arg262Ter) | Pathogenic |
| 1441956 | NM_001042472.3(ABHD12):c.1092_1093insA (p.His365fs) | Pathogenic |
| 144514 | GRCh38/hg38 20p13-q11.1(chr20:80106-30227427)x3 | Pathogenic |
| 1451338 | NM_001042472.3(ABHD12):c.1063C>T (p.Arg355Ter) | Pathogenic |
| 1457527 | NM_001042472.3(ABHD12):c.423G>A (p.Trp141Ter) | Pathogenic |
| 1727244 | NM_001042472.3(ABHD12):c.601dup (p.Val201fs) | Pathogenic |
| 1965513 | NM_001042472.3(ABHD12):c.809dup (p.Leu271fs) | Pathogenic |
| 2037029 | NM_001042472.3(ABHD12):c.347_348delinsG (p.Lys116fs) | Pathogenic |
| 2129146 | NM_001042472.3(ABHD12):c.126dup (p.Thr43fs) | Pathogenic |
| 24 | NM_001042472.3(ABHD12):c.337_338delinsTTT (p.Asp113fs) | Pathogenic |
| 2423574 | NC_000020.10:g.(?25300815)(25300974_?)del | Pathogenic |
| 2423577 | NC_000020.10:g.(?25290062)(25297734_?)del | Pathogenic |
| 2423579 | NC_000020.10:g.(?25295541)(25300974_?)del | Pathogenic |
| 253408 | GRCh37/hg19 20p12.1-q11.21(chr20:17705775-31600738)x3 | Pathogenic |
| 26 | NM_001042472.3(ABHD12):c.846_852dup (p.His285Ter) | Pathogenic |
| 27 | NM_001042472.3(ABHD12):c.1054C>T (p.Arg352Ter) | Pathogenic |
| 2787117 | NM_001042472.3(ABHD12):c.78dup (p.Ala27fs) | Pathogenic |
| 3389452 | NM_001042472.3(ABHD12):c.605C>T (p.Thr202Ile) | Pathogenic |
| 3601008 | NM_001042472.3(ABHD12):c.690G>A (p.Trp230Ter) | Pathogenic |
SpliceAI
3394 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 20:25295669:GG:G | donor_gain | 1.0000 |
| 20:25295670:GG:G | donor_gain | 1.0000 |
| 20:25296365:T:TA | acceptor_gain | 1.0000 |
| 20:25296365:TGCA:T | acceptor_loss | 1.0000 |
| 20:25296366:GCA:G | acceptor_loss | 1.0000 |
| 20:25296367:CA:C | acceptor_loss | 1.0000 |
| 20:25296368:A:AG | acceptor_gain | 1.0000 |
| 20:25296368:AGAAC:A | acceptor_loss | 1.0000 |
| 20:25296369:G:GA | acceptor_gain | 1.0000 |
| 20:25296369:GA:G | acceptor_gain | 1.0000 |
| 20:25296369:GAA:G | acceptor_gain | 1.0000 |
| 20:25296369:GAAC:G | acceptor_gain | 1.0000 |
| 20:25296369:GAACC:G | acceptor_gain | 1.0000 |
| 20:25306831:A:AC | donor_gain | 1.0000 |
| 20:25306832:C:CC | donor_gain | 1.0000 |
| 20:25307960:A:AC | donor_gain | 1.0000 |
| 20:25307961:C:CC | donor_gain | 1.0000 |
| 20:25307962:TTGC:T | donor_gain | 1.0000 |
| 20:25307963:TGCC:T | donor_gain | 1.0000 |
| 20:25308490:CCACG:C | acceptor_gain | 1.0000 |
| 20:25308491:CACG:C | acceptor_gain | 1.0000 |
| 20:25308491:CACGC:C | acceptor_gain | 1.0000 |
| 20:25308492:ACG:A | acceptor_gain | 1.0000 |
| 20:25308492:ACGC:A | acceptor_loss | 1.0000 |
| 20:25308493:CG:C | acceptor_gain | 1.0000 |
| 20:25308493:CGC:C | acceptor_gain | 1.0000 |
| 20:25308493:CGCT:C | acceptor_loss | 1.0000 |
| 20:25308494:GCTA:G | acceptor_loss | 1.0000 |
| 20:25308495:C:CC | acceptor_gain | 1.0000 |
| 20:25308495:CT:C | acceptor_loss | 1.0000 |
AlphaMissense
2593 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 20:25302262:G:C | H372D | 1.000 |
| 20:25303581:T:A | D333V | 1.000 |
| 20:25303582:C:G | D333H | 1.000 |
| 20:25303594:G:C | H329D | 1.000 |
| 20:25308008:G:C | F275L | 1.000 |
| 20:25308008:G:T | F275L | 1.000 |
| 20:25308010:A:G | F275L | 1.000 |
| 20:25309446:C:T | G250D | 1.000 |
| 20:25309452:C:A | G248V | 1.000 |
| 20:25309452:C:T | G248D | 1.000 |
| 20:25309453:C:A | G248C | 1.000 |
| 20:25309453:C:G | G248R | 1.000 |
| 20:25309455:A:G | L247P | 1.000 |
| 20:25309459:A:G | S246P | 1.000 |
| 20:25309464:C:T | G244D | 1.000 |
| 20:25309465:C:G | G244R | 1.000 |
| 20:25309468:A:G | W243R | 1.000 |
| 20:25309468:A:T | W243R | 1.000 |
| 20:25309573:A:G | W208R | 1.000 |
| 20:25309573:A:T | W208R | 1.000 |
| 20:25317078:T:A | R181S | 1.000 |
| 20:25317078:T:G | R181S | 1.000 |
| 20:25320214:C:A | G176V | 1.000 |
| 20:25320214:C:T | G176E | 1.000 |
| 20:25320215:C:A | G176W | 1.000 |
| 20:25323326:A:G | W141R | 1.000 |
| 20:25323326:A:T | W141R | 1.000 |
| 20:25302260:G:C | H372Q | 0.999 |
| 20:25302260:G:T | H372Q | 0.999 |
| 20:25302262:G:A | H372Y | 0.999 |
dbSNP variants (sampled 300 via entrez): RS1000027490 (20:25347729 T>A), RS1000038385 (20:25365425 T>A,G), RS1000076128 (20:25365933 A>G), RS1000094211 (20:25325043 A>C,T), RS1000096310 (20:25319866 T>A), RS1000142451 (20:25376427 C>T), RS1000167683 (20:25348326 C>G), RS1000184611 (20:25311983 C>T), RS1000185488 (20:25302906 C>T), RS1000208984 (20:25392154 A>G), RS1000222781 (20:25387535 G>C), RS1000245834 (20:25302441 C>G,T), RS1000288218 (20:25296611 G>A), RS1000327995 (20:25309213 C>T), RS1000352298 (20:25342571 C>T)
Disease associations
OMIM: gene MIM:613599 | disease phenotypes: MIM:612674
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| PHARC syndrome | Definitive | Autosomal recessive |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| PHARC syndrome | Definitive | AR |
Mondo (7): PHARC syndrome (MONDO:0012984), hearing loss disorder (MONDO:0005365), optic atrophy (MONDO:0003608), cone dystrophy (MONDO:0000455), inherited retinal dystrophy (MONDO:0019118), breast ductal adenocarcinoma (MONDO:0005590), intellectual disability (MONDO:0001071)
Orphanet (5): Polyneuropathy-hearing loss-ataxia-retinitis pigmentosa-cataract syndrome (Orphanet:171848), Progressive cone dystrophy (Orphanet:1871), OBSOLETE: Inherited retinal disorder (Orphanet:71862), OBSOLETE: Syndromic rod-cone dystrophy (Orphanet:98661), NON RARE IN EUROPE: Unexplained intellectual disability (Orphanet:319658)
HPO phenotypes
27 total (28 of 27 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000407 | Sensorineural hearing impairment |
| HP:0000510 | Rod-cone dystrophy |
| HP:0000518 | Cataract |
| HP:0000523 | Subcapsular cataract |
| HP:0000639 | Nystagmus |
| HP:0000648 | Optic atrophy |
| HP:0000762 | Decreased nerve conduction velocity |
| HP:0001251 | Ataxia |
| HP:0001257 | Spasticity |
| HP:0001260 | Dysarthria |
| HP:0001265 | Hyporeflexia |
| HP:0001272 | Cerebellar atrophy |
| HP:0001310 | Dysmetria |
| HP:0001347 | Hyperreflexia |
| HP:0001761 | Pes cavus |
| HP:0001771 | Achilles tendon contracture |
| HP:0002080 | Intention tremor |
| HP:0002936 | Distal sensory impairment |
| HP:0003487 | Babinski sign |
| HP:0003621 | Juvenile onset |
| HP:0003677 | Slowly progressive |
| HP:0003693 | Distal amyotrophy |
| HP:0007108 | Demyelinating peripheral neuropathy |
| HP:0007141 | Sensorimotor neuropathy |
| HP:0011462 | Young adult onset |
| HP:0011463 | Childhood onset |
| HP:0000556 | Retinal dystrophy |
GWAS associations
11 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST001276_7 | Liver enzyme levels (alkaline phosphatase) | 7.000000e-10 |
| GCST007429_82 | Lung function (FVC) | 2.000000e-06 |
| GCST007430_7 | Peak expiratory flow | 1.000000e-06 |
| GCST007431_136 | Lung function (FEV1/FVC) | 1.000000e-07 |
| GCST007432_199 | FEV1 | 1.000000e-12 |
| GCST009652_32 | Serum alkaline phosphatase levels | 7.000000e-10 |
| GCST010204_62 | Low density lipoprotein cholesterol levels | 6.000000e-09 |
| GCST010703_48 | Brain morphology (MOSTest) | 1.000000e-08 |
| GCST90002383_299 | Hematocrit | 2.000000e-09 |
| GCST90002384_471 | Hemoglobin | 3.000000e-10 |
| GCST90011900_6 | Serum alkaline phosphatase levels | 1.000000e-71 |
EFO canonical traits (9, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004533 | alkaline phosphatase measurement |
| EFO:0004312 | vital capacity |
| EFO:0009718 | peak expiratory flow |
| EFO:0004713 | FEV/FVC ratio |
| EFO:0004314 | forced expiratory volume |
| EFO:0004611 | low density lipoprotein cholesterol measurement |
| EFO:0004346 | neuroimaging measurement |
| EFO:0004348 | hematocrit |
| EFO:0004509 | hemoglobin measurement |
MeSH disease descriptors (7)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D018270 | Carcinoma, Ductal, Breast | C04.557.470.200.025.232.500; C04.557.470.615.132.500; C04.588.180.390; C17.800.090.500.390 |
| D000077765 | Cone Dystrophy | C11.270.151; C11.768.216 |
| D034381 | Hearing Loss | C09.218.458.341; C10.597.751.418.341; C23.888.592.763.393.341 |
| D008607 | Intellectual Disability | C10.597.606.360; C23.888.592.604.646; F01.700.687; F03.625.539 |
| D009896 | Optic Atrophy | C10.292.700.225; C11.640.451 |
| D058499 | Retinal Dystrophies | C11.768.585.658 |
| C567203 | Polyneuropathy, Hearing Loss, Ataxia, Retinitis Pigmentosa, And Cataract (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL5516 (SINGLE PROTEIN)
Molecules with ChEMBL bioactivity
2 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 100,293 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).
| Molecule | Name | Phase | Patents |
|---|---|---|---|
| CHEMBL175247 | ORLISTAT | 4 | 38,186 |
| CHEMBL465 | DRONABINOL | 4 | 62,107 |
PharmGKB: 1 entry (VIP=true, CPIC=false)
GtoPdb / IUPHAR curated pharmacology
(IUPHAR/BPS Guide to Pharmacology — expert-curated)
Target class: enzyme — 2-Acylglycerol ester turnover
Most potent curated ligand interactions (2 total), top 2:
| Ligand | Action | Affinity | Parameter |
|---|---|---|---|
| DO264 | Inhibition | 7.96 | pIC50 |
| orlistat | Inhibition | 7.1 | pIC50 |
ChEMBL bioactivities
9 potent at pChembl≥5 of 14 total, top 7 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 7.10 | IC50 | 80 | nM | ORLISTAT |
| 6.72 | IC50 | 190.6 | nM | ORLISTAT |
| 6.72 | IC50 | 190 | nM | ORLISTAT |
| 6.22 | IC50 | 600 | nM | CHEMBL4757488 |
| 5.68 | IC50 | 2100 | nM | CHEMBL4164954 |
| 5.68 | IC50 | 2100 | nM | CHEMBL4780771 |
| 5.60 | IC50 | 2500 | nM | CHEMBL4167303 |
PubChem BioAssay actives
9 with measured affinity, of 204 total; 5 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| Orlistat | 409655: Inhibition of recombinant ABHD12 transfected in HEK293T cells by SDS-PAGE using rhodamine-tagged FP probe | ic50 | 0.0800 | uM |
| N-cycloheptyl-5-(4-fluorophenyl)-1-[(4-fluorophenyl)methyl]-6-methyl-2-oxopyridine-3-carboxamide | 1706236: Inhibition of human ABHD12 expressed in HEK293 cells using 2-OG as substrate preincubated for 30 mins followed by substrate addition and measured after 5 mins by liquid scintillation spectroscopy | ic50 | 0.6000 | uM |
| 5-bromo-N-cycloheptyl-1-[(4-fluorophenyl)methyl]-4-methyl-2-oxopyridine-3-carboxamide | 1360063: Inhibition of human ABHD12 expressed in HEK293 cells using 2-OG as substrate preincubated for 30 mins followed by substrate addition and measured after 5 mins by liquid scintillation spectroscopic method | ic50 | 2.1000 | uM |
| 5-bromo-N-cycloheptyl-2-[(4-fluorophenyl)methoxy]-6-methylpyridine-3-carboxamide | 1706236: Inhibition of human ABHD12 expressed in HEK293 cells using 2-OG as substrate preincubated for 30 mins followed by substrate addition and measured after 5 mins by liquid scintillation spectroscopy | ic50 | 2.1000 | uM |
| N-cycloheptyl-1-[(4-fluorophenyl)methyl]-4-methyl-2-oxo-5-phenylpyridine-3-carboxamide | 1360063: Inhibition of human ABHD12 expressed in HEK293 cells using 2-OG as substrate preincubated for 30 mins followed by substrate addition and measured after 5 mins by liquid scintillation spectroscopic method | ic50 | 2.5000 | uM |
CTD chemical–gene interactions
36 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects cotreatment, increases expression, affects expression, increases methylation | 7 |
| Phenylmercuric Acetate | affects cotreatment, increases expression | 2 |
| alpha-pinene | affects cotreatment, increases oxidation, increases abundance | 1 |
| beta-lapachone | decreases expression, increases expression | 1 |
| sodium arsenite | decreases expression | 1 |
| 2,3-bis(3’-hydroxybenzyl)butyrolactone | affects cotreatment, increases expression | 1 |
| nickel sulfate | decreases expression | 1 |
| methacrylaldehyde | affects cotreatment, increases oxidation, increases abundance | 1 |
| perfluorooctane sulfonic acid | decreases expression | 1 |
| monomethylarsonous acid | increases expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, increases expression | 1 |
| dorsomorphin | affects cotreatment, increases expression | 1 |
| 3-(2-hydroxy-4-(2-methylnonan-2-yl)phenyl)cyclohexan-1-ol | increases expression | 1 |
| Temozolomide | decreases expression | 1 |
| Vorinostat | increases expression | 1 |
| Orlistat | decreases activity | 1 |
| Acetaminophen | increases expression | 1 |
| Acrolein | affects cotreatment, increases oxidation, increases abundance | 1 |
| Air Pollutants | increases oxidation, affects cotreatment, increases abundance | 1 |
| Atrazine | decreases expression | 1 |
| Vehicle Emissions | increases abundance, increases expression | 1 |
| Cannabidiol | increases expression | 1 |
| Coumestrol | affects cotreatment, increases expression | 1 |
| Estradiol | affects cotreatment, increases expression | 1 |
| Formaldehyde | increases expression | 1 |
| Ivermectin | decreases expression | 1 |
| Lead | decreases expression | 1 |
| Ozone | affects cotreatment, increases oxidation, increases abundance | 1 |
| Progesterone | affects cotreatment, increases expression | 1 |
| Ribonucleotides | affects binding | 1 |
ChEMBL screening assays
35 unique, capped per target: 31 binding, 3 toxicity, 1 admet
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL3089724 | Binding | Inhibition of human ABHD12 overexpressed in HEK293 cells assessed as 2-AG hydrolysis at 1 uM by fluorescent glycerol assay | Chiral 1,3,4-oxadiazol-2-ones as highly selective FAAH inhibitors. — J Med Chem |
| CHEMBL4330039 | ADMET | Inhibition of human ABHD12 expressed in HEK293 cells assessed as residual activity at 10 uM preincubated for 30 mins followed by 1-AG substrate addition and measured after 90 to 120 mins by fluorometric assay relative to control | Discovery of 12-Thiazole Abietanes as Selective Inhibitors of the Human Metabolic Serine Hydrolase hABHD16A. — ACS Med Chem Lett |
| CHEMBL5374075 | Toxicity | Inhibition of azido-fluorophosphonate probe binding to human ABHD12 expressed in HEK293T cells at 100 uM incubated for 1 hr followed by azido-fluorophosphonate addition and measured after 1 hr by fluorescent Western blotting analysis relati | Probing the Interactions of Thiazole Abietane Inhibitors with the Human Serine Hydrolases ABHD16A and ABHD12. — ACS Med Chem Lett |
Cellosaurus cell lines
13 cell lines: 12 cancer cell line, 1 induced pluripotent stem cell
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_0559 | TF-1 | Cancer cell line | Male |
| CVCL_3607 | TF-1.CN5a.1 | Cancer cell line | Male |
| CVCL_3608 | TF-1a | Cancer cell line | Male |
| CVCL_8059 | TF-1 D2 | Cancer cell line | Male |
| CVCL_8060 | TF-1 D8 | Cancer cell line | Male |
| CVCL_A4BL | TF-1 IDH2 p.R140Q-Luc2 | Cancer cell line | Male |
| CVCL_A4BP | TF-1-Luc2 | Cancer cell line | Male |
| CVCL_D6NT | UCLi025-A | Induced pluripotent stem cell | Female |
| CVCL_J294 | TF-1 BCR/ABL | Cancer cell line | Male |
| CVCL_KS74 | CellSensor irf1-bla TF1 | Cancer cell line | Male |
Clinical trials (associated diseases)
300 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00205881 | PHASE4 | COMPLETED | Bilateral Benefit in Adult Users of the HiRes 90K Bionic Ear System |
| NCT00331539 | PHASE4 | UNKNOWN | Relationship Between Auto NRT and Behavioural T & C Levels With the Nucleus Freedom Cochlear Implant |
| NCT00424307 | PHASE4 | UNKNOWN | Bilateral Cochlear Implant Benefit in Young Children |
| NCT00765635 | PHASE4 | COMPLETED | Chlorobutanol, Potassium Carbonate, and Irrigation in Cerumen Removal |
| NCT03321006 | PHASE4 | COMPLETED | Treating Hearing Loss to Improve Mood and Cognition in Older Adults |
| NCT01499901 | PHASE3 | WITHDRAWN | Comparison of the Bilateral Sequential and Simultaneous Cochlear Implantation in the Deaf Children |
| NCT02561091 | PHASE3 | COMPLETED | AM-111 in the Treatment of Acute Inner Ear Hearing Loss |
| NCT03331627 | PHASE3 | COMPLETED | Safety and Efficacy of STR001-IT and STR001-ER in Patients With SSHL |
| NCT05532657 | PHASE3 | ACTIVE_NOT_RECRUITING | ACHIEVE Brain Health Follow-Up Study |
| NCT00013455 | PHASE2 | COMPLETED | Quantifying Auditory Perceptual Learning Following Hearing Aid Fitting |
| NCT00323427 | PHASE2 | COMPLETED | Clinical Trial of the Living Well With Hearing Loss Workshop |
| NCT00552786 | PHASE2 | COMPLETED | Antioxidation Medication for Noise-induced Hearing Loss |
| NCT00802425 | PHASE2 | COMPLETED | Efficacy of AM-111 in Patients With Acute Sensorineural Hearing Loss |
| NCT01139281 | PHASE2 | COMPLETED | The Protective Effect of Ginkgo Biloba Extract on Cisplatin-induced Ototoxicity in Humans |
| NCT01451853 | PHASE2 | UNKNOWN | SPI-1005 for Prevention and Treatment of Chemotherapy Induced Hearing Loss |
| NCT01588925 | PHASE2 | COMPLETED | Hearing Preservation Using Dexamethasone and Hyaluronic Acid for Cochlear Implantation |
| NCT01773278 | PHASE2 | RECRUITING | Cholesterol and Antioxidant Treatment in Patients With Smith-Lemli-Opitz Syndrome (SLOS) |
| NCT02832128 | PHASE2 | COMPLETED | Evaluating Possible Improvement in Speech and Hearing Tests After 28 Days of Dosing of the Study Drug AUT00063 Compared to Placebo (QuicKfire) |
| NCT04915183 | PHASE2 | RECRUITING | Atorvastatin to Reduce Cisplatin-Induced Hearing Loss Among Individuals With Head and Neck Cancer |
| NCT05258773 | PHASE2 | COMPLETED | Evaluation of the Presence of SENS-401 in the Perilymph |
| NCT06340633 | PHASE2 | RECRUITING | SPI-1005 in Adults Receiving Cochlear Implant |
| NCT00582946 | PHASE1 | COMPLETED | Wide-Bandwidth Open Canal Hearing Aid For Better Multitalker Speech Understanding |
| NCT00584155 | PHASE1 | WITHDRAWN | Protection From Cisplatin Ototoxicity by Lactated Ringers |
| NCT01206829 | PHASE1 | UNKNOWN | Hearing Impairment, Cognitive Therapy and Coping |
| NCT01256229 | PHASE1 | COMPLETED | Outcomes In Children With Developmental Delay And Deafness |
| NCT01343394 | PHASE1 | WITHDRAWN | Safety of Autologous Human Umbilical Cord Blood Mononuclear Fraction to Treat Acquired Hearing Loss in Children |
| NCT01452607 | PHASE1 | COMPLETED | Study to Evaluate the Safety and Pharmacokinetics of SPI-1005 |
| NCT02259595 | PHASE1 | COMPLETED | Study to Determine the Safety, Tolerability, and Pharmacokinetic Profile of HPN-07 and HPN-07 Plus NAC |
| NCT04041440 | PHASE1 | COMPLETED | Speech Recognition Training in Children With Hearing Loss |
| NCT07218913 | PHASE1 | RECRUITING | Testing the Addition of Pedmark to Cisplatin Chemotherapy for Reducing Drug-Induced Ear Damage in Men With Stage II-III Metastatic Testicular Germ Cell Tumors |
| NCT00486577 | PHASE2/PHASE3 | COMPLETED | Chronic Electrical Stimulation of the Auditory Cortex for Intractable Tinnitus |
| NCT00789061 | PHASE2/PHASE3 | UNKNOWN | Applying Proton Pump Inhibitor to Prevent and Treat Acute Fluctuating Hearing Loss in Patients With SLC26A4 Mutation |
| NCT01423409 | PHASE2/PHASE3 | COMPLETED | Multicenter Trial Assessing an Innovative VAS of Pain Among Deaf People |
| NCT05786378 | PHASE2/PHASE3 | UNKNOWN | Assessment of The Efficacy of Intratympanic Platelet Rich Plasma for Treatment of Sensorineural Hearing Loss. |
| NCT01108601 | PHASE1/PHASE2 | UNKNOWN | Transtympanic Ringer’s Lactate for the Prevention of Cisplatin Ototoxicity |
| NCT01621256 | PHASE1/PHASE2 | COMPLETED | Efficacy, Safety, and Tolerability of Ancrod in Patients With Sudden Hearing Loss |
| NCT06370351 | PHASE1/PHASE2 | RECRUITING | A Phase I/II Clinical Trial with SENS-501 in Children Suffering from Severe to Profound Hearing Loss Due to Otoferlin (OTOF) Mutations |
| NCT06545175 | PHASE1/PHASE2 | RECRUITING | Intracochlear Application of VSF1.01 for the Reduction of Cochlear Implant Surgery Related Trauma |
| NCT07304024 | PHASE1/PHASE2 | RECRUITING | A Treatment for a Form of Age-Related Central Auditory Processing Disorder Consisting of Clemastine Fumarate Plus Engineered Sound |
| NCT01109576 | EARLY_PHASE1 | COMPLETED | Workshops for Veterans With Vision and Hearing Loss |
Related Atlas pages
- Associated diseases: PHARC syndrome
- Targeted by drugs: Orlistat
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): breast ductal adenocarcinoma, cone dystrophy, hearing loss disorder, inherited retinal dystrophy, optic atrophy, PHARC syndrome