ABHD17A
geneOn this page
Also known as MGC5244
Summary
ABHD17A (abhydrolase domain containing 17A, depalmitoylase, HGNC:28756) is a protein-coding gene on chromosome 19p13.3, encoding Alpha/beta hydrolase domain-containing protein 17A (Q96GS6). Hydrolyzes fatty acids from S-acylated cysteine residues in proteins. It is a selective cancer dependency (DepMap: 14.7% of cell lines).
Enables palmitoyl-(protein) hydrolase activity. Involved in negative regulation of NLRP3 inflammasome complex assembly; protein depalmitoylation; and protein localization to membrane. Located in endosome membrane; nuclear speck; and plasma membrane.
Source: NCBI Gene 81926 — RefSeq curated summary.
At a glance
- Clinical variants (ClinVar): 70 total — 3 pathogenic, 1 likely-pathogenic
- Cancer dependency (DepMap): dependent in 14.7% of screened cell lines
- MANE Select transcript:
NM_001130111
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:28756 |
| Approved symbol | ABHD17A |
| Name | abhydrolase domain containing 17A, depalmitoylase |
| Location | 19p13.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | MGC5244 |
| Ensembl gene | ENSG00000129968 |
| Ensembl biotype | protein_coding |
| OMIM | 617942 |
| Entrez | 81926 |
Gene structure
Transcript identifiers
Ensembl transcripts: 19 — 16 protein_coding, 2 retained_intron, 1 nonsense_mediated_decay
ENST00000250974, ENST00000292577, ENST00000588598, ENST00000590661, ENST00000591351, ENST00000592757, ENST00000676686, ENST00000677868, ENST00000887329, ENST00000887330, ENST00000887331, ENST00000887332, ENST00000887333, ENST00000887334, ENST00000922835, ENST00000958657, ENST00000958658, ENST00000958659, ENST00000958660
RefSeq mRNA: 2 — MANE Select: NM_001130111
NM_001130111, NM_031213
CCDS: CCDS32867, CCDS45902
Canonical transcript exons
ENST00000292577 — 5 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000892156 | 1879921 | 1880115 |
| ENSE00001237866 | 1881235 | 1881804 |
| ENSE00001318006 | 1885352 | 1885496 |
| ENSE00002539380 | 1876810 | 1877425 |
| ENSE00003518757 | 1877508 | 1877687 |
Expression profiles
Bgee: expression breadth ubiquitous, 139 present calls, max score 98.91.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 7.0690 / max 67.8986, expressed in 1780 samples.
FANTOM5 promoters (3 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 178091 | 6.8188 | 1777 |
| 178088 | 0.2298 | 67 |
| 178087 | 0.0204 | 10 |
Top tissues by expression
139 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| granulocyte | CL:0000094 | 98.91 | gold quality |
| primary visual cortex | UBERON:0002436 | 98.36 | gold quality |
| Ammon’s horn | UBERON:0001954 | 98.21 | gold quality |
| C1 segment of cervical spinal cord | UBERON:0006469 | 98.07 | gold quality |
| temporal lobe | UBERON:0001871 | 97.79 | gold quality |
| amygdala | UBERON:0001876 | 97.77 | gold quality |
| putamen | UBERON:0001874 | 97.65 | gold quality |
| anterior cingulate cortex | UBERON:0009835 | 97.57 | gold quality |
| right frontal lobe | UBERON:0002810 | 97.52 | gold quality |
| right hemisphere of cerebellum | UBERON:0014890 | 97.37 | gold quality |
| caudate nucleus | UBERON:0001873 | 97.14 | gold quality |
| nucleus accumbens | UBERON:0001882 | 97.14 | gold quality |
| dorsolateral prefrontal cortex | UBERON:0009834 | 97.14 | gold quality |
| substantia nigra | UBERON:0002038 | 97.10 | gold quality |
| cerebellum | UBERON:0002037 | 96.89 | gold quality |
| cerebellar cortex | UBERON:0002129 | 96.87 | gold quality |
| Brodmann (1909) area 9 | UBERON:0013540 | 96.86 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 96.85 | gold quality |
| lower esophagus mucosa | UBERON:0035834 | 96.75 | gold quality |
| superior frontal gyrus | UBERON:0002661 | 96.71 | gold quality |
| blood | UBERON:0000178 | 96.62 | gold quality |
| hypothalamus | UBERON:0001898 | 96.42 | gold quality |
| brain | UBERON:0000955 | 96.24 | gold quality |
| cerebral cortex | UBERON:0000956 | 96.11 | gold quality |
| apex of heart | UBERON:0002098 | 96.08 | gold quality |
| skin of leg | UBERON:0001511 | 95.99 | gold quality |
| skin of abdomen | UBERON:0001416 | 95.80 | gold quality |
| spleen | UBERON:0002106 | 95.79 | gold quality |
| zone of skin | UBERON:0000014 | 95.75 | gold quality |
| right atrium auricular region | UBERON:0006631 | 95.05 | gold quality |
Single-cell (SCXA)
Detected in 8 experiment(s), a significant marker in 6.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-MTAB-8205 | yes | 375.55 |
| E-CURD-122 | yes | 38.86 |
| E-MTAB-9467 | yes | 35.22 |
| E-MTAB-8271 | yes | 18.31 |
| E-HCAD-13 | yes | 8.22 |
| E-ANND-3 | yes | 4.94 |
| E-MTAB-7606 | no | 622.26 |
| E-GEOD-75367 | no | 246.62 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
12 targeting ABHD17A, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-137-3P | 99.87 | 74.74 | 2401 |
| HSA-MIR-516A-3P | 99.46 | 67.96 | 1378 |
| HSA-MIR-516B-3P | 99.46 | 67.96 | 1378 |
| HSA-MIR-7162-5P | 99.46 | 68.08 | 1368 |
| HSA-MIR-4292 | 99.16 | 65.57 | 1767 |
| HSA-MIR-6791-5P | 99.16 | 65.92 | 1844 |
| HSA-MIR-7160-5P | 99.11 | 67.17 | 2207 |
| HSA-MIR-331-3P | 98.76 | 64.91 | 793 |
| HSA-MIR-2115-5P | 98.66 | 68.07 | 1191 |
| HSA-MIR-210-5P | 98.57 | 64.37 | 832 |
| HSA-MIR-3977 | 98.00 | 68.17 | 1500 |
| HSA-MIR-1468-5P | 94.18 | 69.04 | 176 |
Functional genomics
DepMap (CRISPR cell-line fitness): dependent in 14.7% of screened cell lines.
Literature-anchored findings (GeneRIF, showing 1)
- Site-specific deacylation by ABHD17a controls BK channel splice variant activity. (PMID:32913120)
Cross-species orthologs
6 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | abhd17ab | ENSDARG00000043084 |
| danio_rerio | abhd17aa | ENSDARG00000091433 |
| mus_musculus | Abhd17a | ENSMUSG00000003346 |
| rattus_norvegicus | Klf16 | ENSRNOG00000033694 |
| drosophila_melanogaster | CG33096 | FBGN0053096 |
| caenorhabditis_elegans | aho-3 | WBGENE00045192 |
Paralogs (7): ABHD12 (ENSG00000100997), ABHD17B (ENSG00000107362), ABHD12B (ENSG00000131969), ABHD17C (ENSG00000136379), ABHD13 (ENSG00000139826), ABHD16B (ENSG00000183260), ABHD16A (ENSG00000204427)
Protein
Protein identifiers
Alpha/beta hydrolase domain-containing protein 17A — Q96GS6 (reviewed: Q96GS6)
All UniProt accessions (4): Q96GS6, A0A7I2YQW9, K7ENJ6, K7EQ25
UniProt curated annotations — full annotation on UniProt →
Function. Hydrolyzes fatty acids from S-acylated cysteine residues in proteins. Has depalmitoylating activity towards NRAS. Has depalmitoylating activity towards DLG4/PSD95. May have depalmitoylating activity towards MAP6.
Subcellular location. Cell membrane. Endosome membrane. Cell projection. Dendritic spine. Postsynaptic density membrane.
Post-translational modifications. Palmitoylated on cysteine residues located in a cysteine cluster at the N-terminus which promotes membrane localization. Palmitoylation is required for post-synaptic localization and for depalmitoylating activity towards DLG4/PSD95.
Activity regulation. Inhibited by palmostatin-B.
Similarity. Belongs to the AB hydrolase superfamily. ABHD17 family.
Isoforms (4)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q96GS6-1 | 1 | yes |
| Q96GS6-2 | 2 | |
| Q96GS6-3 | 3 | |
| Q96GS6-4 | 4 |
RefSeq proteins (2): NP_001123583, NP_112490 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR022742 | ABHD17C-like | Domain |
| IPR029058 | AB_hydrolase_fold | Homologous_superfamily |
Pfam: PF12146
Catalyzed reactions (Rhea), 1 shown:
- S-hexadecanoyl-L-cysteinyl-[protein] + H2O = L-cysteinyl-[protein] + hexadecanoate + H(+) (RHEA:19233)
UniProt features (13 total): splice variant 4, active site 3, mutagenesis site 2, sequence conflict 2, chain 1, modified residue 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q96GS6-F1 | 89.99 | 0.82 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (3): 190 (charge relay system); 255 (charge relay system); 284 (charge relay system)
Post-translational modifications (1): 307
Mutagenesis-validated functional residues (2):
| Position | Phenotype |
|---|---|
| 190 | loss of catalytic activity. no effect on its localization. no effect on nras plasma membrane localization. |
| 1–19 | reduces catalytic activity. loss of membrane localization. no effect on nras plasma membrane localization. |
Function
Pathways and Gene Ontology
Reactome pathways
5 pathways
| ID | Pathway |
|---|---|
| R-HSA-9648002 | RAS processing |
| R-HSA-162582 | Signal Transduction |
| R-HSA-5673001 | RAF/MAP kinase cascade |
| R-HSA-5683057 | MAPK family signaling cascades |
| R-HSA-5684996 | MAPK1/MAPK3 signaling |
MSigDB gene sets: 210 (showing top):
GOBP_NEGATIVE_REGULATION_OF_PROTEIN_CONTAINING_COMPLEX_ASSEMBLY, GOBP_PROTEIN_LOCALIZATION_TO_CYTOSKELETON, GOBP_INFLAMMATORY_RESPONSE, GOBP_LIPOPROTEIN_METABOLIC_PROCESS, GOBP_MACROMOLECULE_DEACYLATION, GOBP_POSITIVE_REGULATION_OF_PROTEIN_LOCALIZATION, GOBP_MACROMOLECULE_CATABOLIC_PROCESS, GOBP_REGULATION_OF_CELLULAR_COMPONENT_BIOGENESIS, GOBP_NEGATIVE_REGULATION_OF_PROTEIN_LOCALIZATION, GOBP_NEGATIVE_REGULATION_OF_INTRACELLULAR_SIGNAL_TRANSDUCTION, GOBP_NEGATIVE_REGULATION_OF_CELLULAR_COMPONENT_ORGANIZATION, GOBP_POSITIVE_REGULATION_OF_RESPONSE_TO_EXTERNAL_STIMULUS, GOBP_REGULATION_OF_IMMUNE_RESPONSE, RICKMAN_METASTASIS_DN, GOBP_CELL_JUNCTION_ORGANIZATION
GO Biological Process (9): protein depalmitoylation (GO:0002084), protein localization to membrane (GO:0072657), regulation of postsynapse organization (GO:0099175), negative regulation of NLRP3 inflammasome complex assembly (GO:1900226), negative regulation of protein localization to microtubule (GO:1902817), positive regulation of protein localization to endosome (GO:1905668), NLRP3 inflammasome complex assembly (GO:0044546), macromolecule depalmitoylation (GO:0098734), positive regulation of NLRP3 inflammasome complex assembly (GO:1900227)
GO Molecular Function (3): palmitoyl-(protein) hydrolase activity (GO:0008474), protein binding (GO:0005515), hydrolase activity (GO:0016787)
GO Cellular Component (14): plasma membrane (GO:0005886), endosome membrane (GO:0010008), membrane (GO:0016020), nuclear speck (GO:0016607), dendritic spine (GO:0043197), recycling endosome membrane (GO:0055038), postsynaptic density membrane (GO:0098839), postsynaptic recycling endosome membrane (GO:0098944), glutamatergic synapse (GO:0098978), endosome (GO:0005768), postsynaptic density (GO:0014069), cell projection (GO:0042995), synapse (GO:0045202), postsynaptic membrane (GO:0045211)
Reactome top-level categories
Rollup of top-4 pathways:
| Category | Pathways |
|---|---|
| RAF/MAP kinase cascade | 1 |
| MAPK1/MAPK3 signaling | 1 |
| Signal Transduction | 1 |
| MAPK family signaling cascades | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| NLRP3 inflammasome complex assembly | 2 |
| regulation of NLRP3 inflammasome complex assembly | 2 |
| cellular anatomical structure | 2 |
| postsynapse | 2 |
| protein deacylation | 1 |
| lipoprotein catabolic process | 1 |
| macromolecule depalmitoylation | 1 |
| intracellular protein localization | 1 |
| localization within membrane | 1 |
| regulation of synapse organization | 1 |
| postsynapse organization | 1 |
| negative regulation of protein-containing complex assembly | 1 |
| negative regulation of inflammasome-mediated signaling pathway | 1 |
| protein localization to microtubule | 1 |
| regulation of protein localization to microtubule | 1 |
| negative regulation of protein localization | 1 |
| protein localization to endosome | 1 |
| positive regulation of protein localization | 1 |
| regulation of protein localization to endosome | 1 |
| canonical inflammasome complex assembly | 1 |
| macromolecule deacylation | 1 |
| positive regulation of protein-containing complex assembly | 1 |
| positive regulation of inflammasome-mediated signaling pathway | 1 |
| thiolester hydrolase activity | 1 |
| palmitoyl hydrolase activity | 1 |
| catalytic activity, acting on a protein | 1 |
| binding | 1 |
| catalytic activity | 1 |
| membrane | 1 |
| cell periphery | 1 |
| endosome | 1 |
| cytoplasmic vesicle membrane | 1 |
| bounding membrane of organelle | 1 |
| nuclear ribonucleoprotein granule | 1 |
| dendrite | 1 |
| neuron spine | 1 |
| endosome membrane | 1 |
| recycling endosome | 1 |
| postsynaptic density | 1 |
| postsynaptic membrane | 1 |
Protein interactions and networks
STRING
676 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| ABHD17A | ABHD10 | Q9NUJ1 | 682 |
| ABHD17A | PPT1 | P50897 | 650 |
| ABHD17A | LYPLA1 | O75608 | 623 |
| ABHD17A | LYPLA2 | O95372 | 616 |
| ABHD17A | PPT2 | Q9UMR5 | 586 |
| ABHD17A | LYPLAL1 | Q5VWZ2 | 584 |
| ABHD17A | ABHD16A | O95870 | 560 |
| ABHD17A | ZDHHC5 | Q9C0B5 | 524 |
| ABHD17A | ZDHHC7 | Q9NXF8 | 515 |
| ABHD17A | ABHD6 | Q9BV23 | 507 |
| ABHD17A | ZDHHC16 | Q969W1 | 505 |
| ABHD17A | ADAMTS10 | Q9H324 | 467 |
| ABHD17A | ABHD16B | Q9H3Z7 | 464 |
| ABHD17A | ABHD15 | Q6UXT9 | 462 |
| ABHD17A | RBBP9 | O75884 | 454 |
IntAct
29 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| HPGDS | ABHD17A | psi-mi:“MI:0915”(physical association) | 0.670 |
| ABHD17A | HPGDS | psi-mi:“MI:0915”(physical association) | 0.670 |
| ABHD17A | Hoxa1 | psi-mi:“MI:0915”(physical association) | 0.570 |
| Hoxa1 | ABHD17A | psi-mi:“MI:0915”(physical association) | 0.570 |
| ABHD17A | rep | psi-mi:“MI:0915”(physical association) | 0.400 |
| ABHD17A | rep | psi-mi:“MI:0915”(physical association) | 0.370 |
| ABHD17A | DLG4 | psi-mi:“MI:0915”(physical association) | 0.370 |
| TNIP1 | ABHD17A | psi-mi:“MI:0915”(physical association) | 0.370 |
| EHMT2 | ABHD17A | psi-mi:“MI:0915”(physical association) | 0.370 |
| TRAF1 | ABHD17A | psi-mi:“MI:0915”(physical association) | 0.370 |
| ABHD17A | GOLGA2 | psi-mi:“MI:0915”(physical association) | 0.370 |
| GPC4 | ABHD17A | psi-mi:“MI:0915”(physical association) | 0.370 |
| RGS20 | ABHD17A | psi-mi:“MI:0915”(physical association) | 0.370 |
| ABHD17A | TRIM27 | psi-mi:“MI:0915”(physical association) | 0.370 |
| ABHD17A | KRTAP5-9 | psi-mi:“MI:0915”(physical association) | 0.370 |
| ABHD17A | BIRC2 | psi-mi:“MI:0915”(physical association) | 0.370 |
| ABHD17A | PNMA1 | psi-mi:“MI:0915”(physical association) | 0.370 |
| MDFI | ABHD17A | psi-mi:“MI:0915”(physical association) | 0.370 |
| C5AR2 | UBXN8 | psi-mi:“MI:0914”(association) | 0.350 |
| GPR12 | TLCD2 | psi-mi:“MI:0914”(association) | 0.350 |
| ABHD17A | DYNLT2B | psi-mi:“MI:0914”(association) | 0.350 |
| ABHD17A | SPAG9 | psi-mi:“MI:0914”(association) | 0.350 |
| P2RY8 | CIT | psi-mi:“MI:0914”(association) | 0.350 |
| UPK2 | IFT56 | psi-mi:“MI:0914”(association) | 0.350 |
| ABHD17A | yopM | psi-mi:“MI:0915”(physical association) | 0.000 |
BioGRID (47): ABHD17A (Two-hybrid), VPS28 (Affinity Capture-MS), TCTEX1D2 (Affinity Capture-MS), ABHD17A (PCA), Hoxa1 (Affinity Capture-Western), ABHD17A (Two-hybrid), ABHD17A (Two-hybrid), ABHD17A (Two-hybrid), ABHD17A (Two-hybrid), ABHD17A (Two-hybrid), ABHD17A (Two-hybrid), ABHD17A (Two-hybrid), ABHD17A (Two-hybrid), ABHD17A (Two-hybrid), ABHD17A (Two-hybrid)
ESM2 similar proteins: A0A2R8QFQ6, A0A2R8RWN9, A0JN27, A5PKD9, B5DFK7, D3Z7P3, G3MWR8, O94925, P13264, Q01098, Q08DW9, Q14722, Q28528, Q28D01, Q2HJ19, Q2YDM2, Q4R766, Q5JUK3, Q5NVE6, Q5RIC0, Q5SRY7, Q5TA45, Q5XIJ5, Q5ZIN0, Q5ZJ01, Q5ZJX1, Q67FW5, Q6DCC5, Q6DD70, Q6DEY3, Q6GL10, Q6PCB6, Q6ZPR4, Q7RTP6, Q7ZVZ7, Q8BTG7, Q8C6G8, Q8CJ19, Q8N2K0, Q8TF64
Diamond homologs: A0A2S3R7M0, A5PKD9, B5DFK7, Q2HJ19, Q5UQK4, Q5VST6, Q5XIJ5, Q5ZJ01, Q5ZJX1, Q6AY17, Q6DCC5, Q6DD70, Q6DEY3, Q6GL10, Q6IRP4, Q6PCB6, Q7M759, Q7ZVZ7, Q8RXP6, Q8VCV1, Q96GS6, Q99JW1, Q9KS12, P77538, P9WLC6, P9WLC7, Q21221, Q8XA81, A0A084R1K6, B4F753, P0CU85, P54069, Q08C93, Q08DW9, Q32LS6, Q4R766, Q5ZIN0, Q5ZJL8, Q6AYT7, Q7L211
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
70 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 3 |
| Likely pathogenic | 1 |
| Uncertain significance | 54 |
| Likely benign | 4 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (4)
| Variant ID | HGVS | Classification |
|---|---|---|
| 145414 | GRCh38/hg38 19p13.3(chr19:1549144-4288720)x1 | Pathogenic |
| 59081 | GRCh38/hg38 19p13.3(chr19:1565575-4108128)x3 | Pathogenic |
| 60069 | GRCh38/hg38 19p13.3(chr19:1727562-2306496)x1 | Pathogenic |
| 816060 | GRCh37/hg19 19p13.3(chr19:1075192-2256387)x3 | Likely pathogenic |
SpliceAI
1223 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 19:1877421:CGATG:C | acceptor_gain | 1.0000 |
| 19:1877422:GATG:G | acceptor_gain | 1.0000 |
| 19:1877423:ATG:A | acceptor_gain | 1.0000 |
| 19:1877424:TG:T | acceptor_gain | 1.0000 |
| 19:1877424:TGCTG:T | acceptor_loss | 1.0000 |
| 19:1877426:C:CC | acceptor_gain | 1.0000 |
| 19:1877426:CT:C | acceptor_loss | 1.0000 |
| 19:1877506:A:AC | donor_gain | 1.0000 |
| 19:1877507:C:CT | donor_gain | 1.0000 |
| 19:1877507:CT:C | donor_gain | 1.0000 |
| 19:1877507:CTT:C | donor_gain | 1.0000 |
| 19:1877510:A:AC | donor_gain | 1.0000 |
| 19:1877511:G:C | donor_gain | 1.0000 |
| 19:1879915:CCTCA:C | donor_loss | 1.0000 |
| 19:1879916:CTCA:C | donor_loss | 1.0000 |
| 19:1879917:TCA:T | donor_loss | 1.0000 |
| 19:1879918:CACC:C | donor_loss | 1.0000 |
| 19:1879919:A:AG | donor_loss | 1.0000 |
| 19:1879920:C:CT | donor_loss | 1.0000 |
| 19:1880116:CTGGG:C | acceptor_loss | 1.0000 |
| 19:1885448:T:TA | donor_gain | 1.0000 |
| 19:1877502:GCTCA:G | donor_loss | 0.9900 |
| 19:1877503:CTCA:C | donor_loss | 0.9900 |
| 19:1877504:TCAC:T | donor_loss | 0.9900 |
| 19:1877505:CACT:C | donor_loss | 0.9900 |
| 19:1877506:AC:A | donor_loss | 0.9900 |
| 19:1877507:CTTA:C | donor_gain | 0.9900 |
| 19:1877507:CTTAG:C | donor_gain | 0.9900 |
| 19:1877536:T:TA | donor_gain | 0.9900 |
| 19:1877685:TACC:T | acceptor_loss | 0.9900 |
AlphaMissense
2004 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 19:1877243:A:G | L297P | 1.000 |
| 19:1877276:T:A | D286V | 1.000 |
| 19:1877276:T:G | D286A | 1.000 |
| 19:1877277:C:G | D286H | 1.000 |
| 19:1877278:G:C | N285K | 1.000 |
| 19:1877278:G:T | N285K | 1.000 |
| 19:1877281:G:C | H284Q | 1.000 |
| 19:1877281:G:T | H284Q | 1.000 |
| 19:1877282:T:A | H284L | 1.000 |
| 19:1877282:T:C | H284R | 1.000 |
| 19:1877283:G:A | H284Y | 1.000 |
| 19:1877283:G:C | H284D | 1.000 |
| 19:1877283:G:T | H284N | 1.000 |
| 19:1877288:G:T | A282D | 1.000 |
| 19:1877301:A:G | W278R | 1.000 |
| 19:1877301:A:T | W278R | 1.000 |
| 19:1877303:A:G | L277P | 1.000 |
| 19:1877345:C:T | G263E | 1.000 |
| 19:1877346:C:A | G263W | 1.000 |
| 19:1877346:C:G | G263R | 1.000 |
| 19:1877346:C:T | G263R | 1.000 |
| 19:1877360:A:T | I258N | 1.000 |
| 19:1877368:G:C | D255E | 1.000 |
| 19:1877368:G:T | D255E | 1.000 |
| 19:1877369:T:A | D255V | 1.000 |
| 19:1877369:T:C | D255G | 1.000 |
| 19:1877369:T:G | D255A | 1.000 |
| 19:1877370:C:A | D255Y | 1.000 |
| 19:1877370:C:G | D255H | 1.000 |
| 19:1877370:C:T | D255N | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000163913 (19:1883543 G>A), RS1000166358 (19:1878922 A>C,G), RS1000189507 (19:1886753 C>A,T), RS1000607602 (19:1883855 T>C), RS1000728779 (19:1879060 T>A,C), RS1001276771 (19:1878120 C>T), RS1001372239 (19:1887013 T>C), RS1001386219 (19:1886842 C>A), RS1001566978 (19:1883931 A>C), RS1001623444 (19:1882351 CAACA>C), RS1002238204 (19:1877106 CG>C,CGG), RS1002389491 (19:1885841 C>A), RS1002621982 (19:1876964 G>A), RS1002990187 (19:1884890 G>A), RS1003397659 (19:1885045 G>A)
Disease associations
OMIM: gene MIM:617942 | disease phenotypes: MIM:616540, MIM:608709
GenCC curated gene-disease
Mondo (3): progressive myoclonic epilepsy type 9 (MONDO:0014685), lipodystrophy, partial, acquired, susceptibility to (MONDO:0100476), neurodevelopmental disorder (MONDO:0700092)
Orphanet (1): Progressive myoclonic epilepsy type 9 (Orphanet:457265)
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
0 associations (top):
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D065886 | Neurodevelopmental Disorders | F03.625 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
22 total (human), top 22 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| sodium arsenite | increases expression | 2 |
| Arsenic | affects expression, affects methylation | 2 |
| aristolochic acid I | increases expression | 1 |
| bisphenol A | decreases methylation, affects cotreatment | 1 |
| trichostatin A | affects expression | 1 |
| nickel sulfate | increases expression | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| (+)-JQ1 compound | decreases expression | 1 |
| 4-(4-((5-(4,5-dimethyl-2-nitrophenyl)-2-furanyl)methylene)-4,5-dihydro-3-methyl-5-oxo-1H-pyrazol-1-yl)benzoic acid | decreases expression | 1 |
| Resveratrol | affects cotreatment, decreases expression | 1 |
| Fulvestrant | affects cotreatment, decreases methylation | 1 |
| Vehicle Emissions | decreases expression, increases abundance | 1 |
| Benzo(a)pyrene | affects methylation | 1 |
| Plant Extracts | affects cotreatment, decreases expression | 1 |
| Selenium | increases expression | 1 |
| Smoke | decreases expression | 1 |
| Dronabinol | increases expression | 1 |
| Valproic Acid | increases methylation | 1 |
| Cadmium Chloride | decreases expression | 1 |
| tert-Butylhydroperoxide | decreases expression | 1 |
| Particulate Matter | decreases expression, increases abundance | 1 |
Cellosaurus cell lines
1 cell lines: 1 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_B1IN | Abcam HeLa ABHD17A KO | Cancer cell line | Female |
Clinical trials (associated diseases)
202 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT04586348 | PHASE4 | UNKNOWN | Prenatal Iodine Supplementation and Early Childhood Neurodevelopment |
| NCT04873115 | PHASE4 | UNKNOWN | Double-blind, Placebo-controlled, Randomized Clinical Trial Comparing the Efficacy and Safety of Sialanar Plus orAl rehabiLitation Against Placebo Plus Oral Rehabilitation for chIldren and Adolescents With seVere Sialorrhoea and Neurodisabilties, |
| NCT02559102 | PHASE3 | COMPLETED | Dexmedetomidine Sedation Versus General Anaesthesia for Inguinal Hernia Surgery in Infants |
| NCT02757079 | PHASE3 | COMPLETED | Study of the Efficacy and Safety of NPC-15 for Sleep Disorders of Children With Neurodevelopmental Disorders |
| NCT06915480 | PHASE3 | RECRUITING | Reducing Missed Appointments |
| NCT07377032 | PHASE3 | RECRUITING | TAP-GRIN: Interventional Study on Patients With GRIN-related Neurodevelopmental Disorders |
| NCT02909959 | PHASE2 | COMPLETED | Sulforaphane for the Treatment of Young Men With Autism Spectrum Disorder |
| NCT06081348 | PHASE2 | RECRUITING | Sertraline vs. Placebo in the Treatment of Anxiety in Children and AdoLescents With NeurodevelopMental Disorders |
| NCT06352372 | PHASE2 | COMPLETED | Safety and Efficacy of tPBM for Epileptiform Activity in Autism |
| NCT00503191 | PHASE1 | COMPLETED | NeuroModulation Technique Treatment of Autism |
| NCT04475848 | PHASE1 | COMPLETED | A Study to Investigate the Safety, Tolerability, Pharmacokinetics, Pharmacodynamics and Food Effect of RO6953958 in Healthy Participants |
| NCT06300398 | PHASE1 | COMPLETED | IAMA-6 Oral Dose Study in Healthy Adults |
| NCT01783041 | PHASE2/PHASE3 | COMPLETED | Effect of Early L-Carnitine Supplementation on Neurodevelopmental Outcomes in Very Preterm Infants |
| NCT05767385 | PHASE2/PHASE3 | RECRUITING | Fetal Cerebrovascular Autoregulation in Congenital Heart Disease and Association With Neonatal Neurobehavior |
| NCT05675098 | EARLY_PHASE1 | NOT_YET_RECRUITING | Central Nervous System Stimulants and Physical Function in Children With Cerebral Palsy |
| NCT00783783 | Not specified | COMPLETED | CYP2D6 Pharmacogenetics in Risperidone-Treated Children |
| NCT01778504 | Not specified | RECRUITING | Studying Childhood-onset Behavioral, Psychiatric, and Developmental Disorders |
| NCT01850784 | Not specified | UNKNOWN | High Energy Formula Feeding in Infants With Congenital Heart Disease |
| NCT01922791 | Not specified | COMPLETED | Nutrition and Pregnancy Intervention Study |
| NCT01942525 | Not specified | UNKNOWN | Influence of Intrauterine Growth Restriction on Amplitude-integrated EEG in Preterm Infants |
| NCT02003170 | Not specified | COMPLETED | Etiology and Early Diagnosis of Neurodevelopmental Disorders |
| NCT02118649 | Not specified | ACTIVE_NOT_RECRUITING | Enhancing Behavior and Brain Response to Visual Targets Using a Computer Game |
| NCT02557191 | Not specified | TERMINATED | Biomarkers, Neurodevelopment and Preterm Infants |
| NCT02690675 | Not specified | COMPLETED | Iron Supplement Effect on Child Development |
| NCT02694003 | Not specified | COMPLETED | Better Nights, Better Days for Children With Neurodevelopment Disorders |
| NCT02792894 | Not specified | COMPLETED | Family Networks (FaNs) for Children With Developmental Disorders and Delays |
| NCT02871674 | Not specified | UNKNOWN | Good Night Project: Behavioural Sleep Interventions for Children With ADHD: A Randomised Controlled Trial |
| NCT02887157 | Not specified | COMPLETED | Analyzing Retinal Microanatomy in ROP |
| NCT02898298 | Not specified | COMPLETED | Positive Emotion Regulation Training in Children, Adolescents and Young Adults With and Without Developmental Disorder |
| NCT02912780 | Not specified | UNKNOWN | Introduction of Microsystems in a Level 3 Neonatal Intensive Care Unit |
| NCT03023293 | Not specified | COMPLETED | n-3 PUFAs, Irisin and Maternal Glucose Metabolism From Pregnancy to Postpartum |
| NCT03023644 | Not specified | COMPLETED | Improving Neurodevelopmental Outcomes in Children With Congenital Heart Disease: An Intervention Study |
| NCT03032991 | Not specified | UNKNOWN | Early Biomarkers of Neurodevelopment in Offspring of Diabetic Mothers |
| NCT03088189 | Not specified | TERMINATED | Effect of Parental Peri-conceptional Vitamin B12 Supplementation on Infant Neurocognitive Development in Offspring |
| NCT03096028 | Not specified | COMPLETED | Developmental Origins of Mental Health Disorders |
| NCT03148782 | Not specified | COMPLETED | Brain Plasticity Underlying Acquisition of New Organizational Skills in Children-R61 Phase |
| NCT03172104 | Not specified | COMPLETED | Neurobehavioural Development of Infants Born <30 Weeks Gestational Age Between Birth and Five Years of Age |
| NCT03222375 | Not specified | RECRUITING | SQUED™ Series 28.1 Home-use and Treatment of Autowave Reverberator of Autism |
| NCT03229928 | Not specified | COMPLETED | Clinical Testing of a Real-Time Behavior Measurement Tool: Measuring Outcomes for CHAnge |
| NCT03232489 | Not specified | UNKNOWN | Study for the Evaluation of the Feasibility of Applying Advanced MRI Scanning in Pediatric Clinical Practice |
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): lipodystrophy, partial, acquired, susceptibility to, progressive myoclonic epilepsy type 9