ACADVL
gene geneOn this page
Also known as VLCADLCACDACAD6
Summary
ACADVL (acyl-CoA dehydrogenase very long chain, HGNC:92) is a protein-coding gene on chromosome 17p13.1, encoding Very long-chain acyl-CoA dehydrogenase, mitochondrial (P49748). Catalyzes the first of the four reactions of the mitochondrial fatty acid beta-oxidation (FAO) pathway, which consists in the proR-proR stereospecific alpha, beta-dehydrogenation of fatty acyl-CoA thioesters using the electron transfer flavoprotein (ETF) as their physiologic ele….
The protein encoded by this gene is targeted to the inner mitochondrial membrane where it catalyzes the first step of the mitochondrial fatty acid beta-oxidation pathway. This acyl-Coenzyme A dehydrogenase is specific to long-chain and very-long-chain fatty acids. A deficiency in this gene product reduces myocardial fatty acid beta-oxidation and is associated with cardiomyopathy. Alternative splicing results in multiple transcript variants encoding different isoforms.
Source: NCBI Gene 37 — RefSeq curated summary.
At a glance
- Gene–disease (curated): very long chain acyl-CoA dehydrogenase deficiency (Definitive, ClinGen)
- GWAS associations: 2
- Clinical variants (ClinVar): 2,173 total — 148 pathogenic, 329 likely-pathogenic (top 1% of genes corpus-wide)
- GTEx eGene: eQTL in 27 tissues, sQTL in 48 (q < 0.05)
- Phenotypes (HPO): 66
- ChEMBL bioactivity: 1 clinical-phase molecule tested; no curated mechanism-of-action drug
- Dosage sensitivity (ClinGen): haploinsufficiency autosomal recessive, triplosensitivity no evidence
- Constraint (gnomAD): pLI 0.00 (LoF-tolerant), LOEUF 1.08 (unconstrained)
- MANE Select transcript:
NM_000018 - Interaction hub: 2,404 STRING partners (top 5% of genes corpus-wide)
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:92 |
| Approved symbol | ACADVL |
| Name | acyl-CoA dehydrogenase very long chain |
| Location | 17p13.1 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | VLCAD, LCACD, ACAD6 |
| Ensembl gene | ENSG00000072778 |
| Ensembl biotype | protein_coding |
| OMIM | 609575 |
| Entrez | 37 |
Gene structure
Transcript identifiers
Ensembl transcripts: 137 — 57 nonsense_mediated_decay, 53 protein_coding, 24 retained_intron, 3 protein_coding_CDS_not_defined
MANE Select: ENST00000356839
Transcript support level (Ensembl TSL; 1 = fully mRNA-supported): TSL 1: 2, TSL 2: 16, TSL 3: 9, TSL 4: 4, TSL 5: 7
ENST00000356839, ENST00000322910, ENST00000350303, ENST00000542255, ENST00000543245, ENST00000577191, ENST00000577433, ENST00000577857, ENST00000578033, ENST00000578269, ENST00000578319, ENST00000578421, ENST00000578579, ENST00000578711, ENST00000578809, ENST00000578824, ENST00000579286, ENST00000579391, ENST00000579425, ENST00000579546, ENST00000579886, ENST00000579894, ENST00000580263, ENST00000580365, ENST00000581378, ENST00000581562, ENST00000582056, ENST00000582166, ENST00000582356, ENST00000582379, ENST00000582450, ENST00000583074, ENST00000583312, ENST00000583760, ENST00000583848, ENST00000583850, ENST00000583858, ENST00000584103, ENST00000585203, ENST00000883757, ENST00000883758, ENST00000883759, ENST00000883760, ENST00000883761, ENST00000883762, ENST00000883763, ENST00000883764, ENST00000883765, ENST00000883766, ENST00000883767, ENST00000883768, ENST00000883769, ENST00000883770, ENST00000883771, ENST00000916066, ENST00000916067, ENST00000916068, ENST00000916069, ENST00000916070, ENST00000916071, ENST00000945291, ENST00000945292, ENST00000945293, ENST00000945294, ENST00000945295, ENST00000945296, ENST00000945297, ENST00000945298, ENST00000945299, ENST00000945300, ENST00000945301, ENST00000945302, ENST00000945303, ENST00000945304, ENST00000945305, ENST00000945306, ENST00000945307, ENST00000945308, ENST00000945309, ENST00000945310, ENST00000945311, ENST00000945312, ENST00000945313, ENST00000988269, ENST00000988272, ENST00000988275, ENST00000988277, ENST00000988279, ENST00000988281, ENST00000988286, ENST00000988291, ENST00001020489, ENST00001020491, ENST00001020497, ENST00001020498, ENST00001020499, ENST00001020500, ENST00001020501, ENST00001020502, ENST00001020503, ENST00001020506, ENST00001020509, ENST00001020510, ENST00001020512, ENST00001020513, ENST00001020516, ENST00001020518, ENST00001020520, ENST00001020521, ENST00001020524, ENST00001020525, ENST00001020527, ENST00001020529, ENST00001020530, ENST00001020534, ENST00001020539, ENST00001020540, ENST00001020542, ENST00001020544, ENST00001020547, ENST00001020549, ENST00001020550, ENST00001020552, ENST00001020561, ENST00001020562, ENST00001020564, ENST00001020565, ENST00001020567, ENST00001020569, ENST00001020570, ENST00001020571, ENST00001063156, ENST00001063157, ENST00001110263, ENST00001110265, ENST00001110266, ENST00001127422
RefSeq mRNA: 4 — MANE Select: NM_000018
NM_000018, NM_001033859, NM_001270447, NM_001270448
CCDS: CCDS11090, CCDS42249, CCDS58509
Canonical transcript exons
ENST00000356839 — 20 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001486705 | 7219938 | 7220046 |
| ENSE00003495192 | 7223813 | 7223875 |
| ENSE00003496224 | 7221952 | 7222081 |
| ENSE00003498077 | 7222177 | 7222302 |
| ENSE00003511252 | 7224642 | 7224714 |
| ENSE00003539847 | 7223644 | 7223730 |
| ENSE00003579637 | 7224809 | 7224884 |
| ENSE00003579906 | 7222667 | 7222865 |
| ENSE00003587027 | 7223968 | 7224069 |
| ENSE00003592784 | 7220604 | 7220676 |
| ENSE00003600063 | 7224321 | 7224393 |
| ENSE00003602696 | 7224957 | 7225266 |
| ENSE00003623330 | 7221538 | 7221682 |
| ENSE00003624965 | 7224480 | 7224552 |
| ENSE00003626264 | 7223133 | 7223237 |
| ENSE00003628984 | 7220122 | 7220197 |
| ENSE00003650064 | 7224146 | 7224243 |
| ENSE00003656333 | 7220464 | 7220529 |
| ENSE00003678875 | 7220766 | 7220830 |
| ENSE00003682500 | 7220924 | 7221058 |
Expression profiles
Bgee: expression breadth ubiquitous, 295 present calls, max score 99.87.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 98.8367 / max 1186.8631, expressed in 1827 samples.
Highest expression (Bgee): adrenal gland cortex, apex of heart, adrenal gland, adenohypophysis, lobe of liver.
Genetic regulation across tissues (GTEx eQTL / sQTL)
ACADVL is an eGene in GTEx v10 — its expression is genetically regulated (eQTL) in 27 tissues and its splicing (sQTL) in 48 (q < 0.05). Strongest associations first; slope = normalized effect of the lead variant’s alternative allele.
showing 20 of 75 significant tissue × QTL associations:
| Tissue | QTL | q-value | Slope | Lead variant |
|---|---|---|---|---|
| Thyroid | sqtl | 4.0e-160 | +3.70 | 17:7220519:C:T |
| Cells Cultured fibroblasts | sqtl | 6.3e-137 | +3.60 | 17:7220519:C:T |
| Artery Tibial | sqtl | 1.5e-134 | +3.35 | 17:7220519:C:T |
| Whole Blood | sqtl | 2.0e-127 | +3.17 | 17:7220519:C:T |
| Lung | sqtl | 3.2e-121 | +3.65 | 17:7220519:C:T |
| Esophagus Muscularis | sqtl | 2.2e-120 | +3.67 | 17:7220519:C:T |
| Adipose Subcutaneous | sqtl | 3.5e-118 | +3.35 | 17:7220519:C:T |
| Nerve Tibial | sqtl | 1.2e-116 | +3.21 | 17:7220519:C:T |
| Skin Sun Exposed Lower leg | sqtl | 2.7e-114 | +3.26 | 17:7220519:C:T |
| Adipose Visceral Omentum | sqtl | 2.5e-108 | +3.66 | 17:7220519:C:T |
| Breast Mammary Tissue | sqtl | 2.6e-104 | +3.64 | 17:7220519:C:T |
| Stomach | sqtl | 3.7e-91 | +3.36 | 17:7220519:C:T |
| Colon Sigmoid | sqtl | 3.9e-82 | +3.59 | 17:7220519:C:T |
| Cells EBV-transformed lymphocytes | sqtl | 7.6e-77 | +3.23 | 17:7220519:C:T |
| Heart Atrial Appendage | sqtl | 5.3e-75 | +3.90 | 17:7220519:C:T |
| Artery Aorta | sqtl | 1.9e-72 | +3.79 | 17:7220519:C:T |
| Heart Left Ventricle | sqtl | 2.1e-66 | +3.94 | 17:7220519:C:T |
| Esophagus Gastroesophageal Junction | sqtl | 1.0e-64 | +3.78 | 17:7220519:C:T |
| Pancreas | sqtl | 2.0e-51 | +3.77 | 17:7220519:C:T |
| Testis | sqtl | 1.5e-43 | +3.64 | 17:7220519:C:T |
FANTOM5 promoters
6 alternative TSS:
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 159115 | 89.9945 | 1827 |
| 159114 | 4.9391 | 1098 |
| 159116 | 2.5998 | 1202 |
| 159117 | 0.8662 | 336 |
| 208045 | 0.3237 | 132 |
| 159118 | 0.1134 | 48 |
Top tissues by expression
showing 100 of 295 tissues by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| right adrenal gland cortex | UBERON:0035827 | 99.87 | gold quality |
| apex of heart | UBERON:0002098 | 99.86 | gold quality |
| right adrenal gland | UBERON:0001233 | 99.85 | gold quality |
| left adrenal gland cortex | UBERON:0035825 | 99.84 | gold quality |
| left adrenal gland | UBERON:0001234 | 99.83 | gold quality |
| adenohypophysis | UBERON:0002196 | 99.83 | gold quality |
| right lobe of liver | UBERON:0001114 | 99.81 | gold quality |
| adrenal cortex | UBERON:0001235 | 99.81 | gold quality |
| metanephros cortex | UBERON:0010533 | 99.81 | gold quality |
| lower esophagus mucosa | UBERON:0035834 | 99.79 | gold quality |
| right hemisphere of cerebellum | UBERON:0014890 | 99.78 | gold quality |
| left lobe of thyroid gland | UBERON:0001120 | 99.77 | gold quality |
| right lobe of thyroid gland | UBERON:0001119 | 99.74 | gold quality |
| adrenal gland | UBERON:0002369 | 99.73 | gold quality |
| pituitary gland | UBERON:0000007 | 99.68 | gold quality |
| heart left ventricle | UBERON:0002084 | 99.68 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 99.68 | gold quality |
| small intestine Peyer’s patch | UBERON:0003454 | 99.68 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 99.68 | gold quality |
| body of pancreas | UBERON:0001150 | 99.67 | gold quality |
| transverse colon | UBERON:0001157 | 99.67 | gold quality |
| body of stomach | UBERON:0001161 | 99.66 | gold quality |
| right uterine tube | UBERON:0001302 | 99.66 | gold quality |
| cardiac ventricle | UBERON:0002082 | 99.66 | gold quality |
| right testis | UBERON:0004534 | 99.64 | gold quality |
| hindlimb stylopod muscle | UBERON:0004252 | 99.63 | gold quality |
| left testis | UBERON:0004533 | 99.63 | gold quality |
| cerebellar cortex | UBERON:0002129 | 99.62 | gold quality |
| right atrium auricular region | UBERON:0006631 | 99.62 | gold quality |
| endocervix | UBERON:0000458 | 99.61 | gold quality |
| right ovary | UBERON:0002118 | 99.59 | gold quality |
| left ovary | UBERON:0002119 | 99.59 | gold quality |
| muscle layer of sigmoid colon | UBERON:0035805 | 99.59 | gold quality |
| gastrocnemius | UBERON:0001388 | 99.58 | gold quality |
| body of uterus | UBERON:0009853 | 99.58 | gold quality |
| lower esophagus | UBERON:0013473 | 99.58 | gold quality |
| lower esophagus muscularis layer | UBERON:0035833 | 99.58 | gold quality |
| esophagogastric junction muscularis propria | UBERON:0035841 | 99.58 | gold quality |
| small intestine | UBERON:0002108 | 99.57 | gold quality |
| omental fat pad | UBERON:0010414 | 99.57 | gold quality |
| gall bladder | UBERON:0002110 | 99.56 | gold quality |
| upper lobe of left lung | UBERON:0008952 | 99.56 | gold quality |
| mucosa of stomach | UBERON:0001199 | 99.55 | gold quality |
| minor salivary gland | UBERON:0001830 | 99.55 | gold quality |
| peritoneum | UBERON:0002358 | 99.55 | gold quality |
| right lung | UBERON:0002167 | 99.53 | gold quality |
| ectocervix | UBERON:0012249 | 99.52 | gold quality |
| right frontal lobe | UBERON:0002810 | 99.51 | gold quality |
| esophagus | UBERON:0001043 | 99.50 | gold quality |
| left uterine tube | UBERON:0001303 | 99.50 | gold quality |
| skin of abdomen | UBERON:0001416 | 99.50 | gold quality |
| thyroid gland | UBERON:0002046 | 99.48 | gold quality |
| adipose tissue of abdominal region | UBERON:0007808 | 99.48 | gold quality |
| tibial nerve | UBERON:0001323 | 99.47 | gold quality |
| esophagus mucosa | UBERON:0002469 | 99.46 | gold quality |
| granulocyte | CL:0000094 | 99.45 | gold quality |
| stomach | UBERON:0000945 | 99.45 | gold quality |
| stromal cell of endometrium | CL:0002255 | 99.44 | gold quality |
| skin of leg | UBERON:0001511 | 99.44 | gold quality |
| olfactory segment of nasal mucosa | UBERON:0005386 | 99.44 | gold quality |
| rectum | UBERON:0001052 | 99.43 | gold quality |
| muscle of leg | UBERON:0001383 | 99.43 | gold quality |
| heart | UBERON:0000948 | 99.42 | gold quality |
| left coronary artery | UBERON:0001626 | 99.38 | gold quality |
| colonic epithelium | UBERON:0000397 | 99.32 | gold quality |
| cardiac atrium | UBERON:0002081 | 99.32 | gold quality |
| upper lobe of lung | UBERON:0008948 | 99.31 | gold quality |
| coronary artery | UBERON:0001621 | 99.30 | gold quality |
| saliva-secreting gland | UBERON:0001044 | 99.28 | gold quality |
| right coronary artery | UBERON:0001625 | 99.28 | gold quality |
| mouth mucosa | UBERON:0003729 | 99.28 | gold quality |
| adrenal tissue | UBERON:0018303 | 99.25 | gold quality |
| fundus of stomach | UBERON:0001160 | 99.23 | gold quality |
| ascending aorta | UBERON:0001496 | 99.22 | gold quality |
| thoracic aorta | UBERON:0001515 | 99.22 | gold quality |
| descending thoracic aorta | UBERON:0002345 | 99.21 | gold quality |
| duodenum | UBERON:0002114 | 99.19 | gold quality |
| sigmoid colon | UBERON:0001159 | 99.17 | gold quality |
| intestine | UBERON:0000160 | 99.15 | gold quality |
| colon | UBERON:0001155 | 99.15 | gold quality |
| muscle organ | UBERON:0001630 | 99.15 | gold quality |
| aorta | UBERON:0000947 | 99.14 | gold quality |
| popliteal artery | UBERON:0002250 | 99.12 | gold quality |
| tibial artery | UBERON:0007610 | 99.12 | gold quality |
| jejunal mucosa | UBERON:0000399 | 99.08 | gold quality |
| large intestine | UBERON:0000059 | 99.05 | gold quality |
| spleen | UBERON:0002106 | 99.03 | gold quality |
| C1 segment of cervical spinal cord | UBERON:0006469 | 99.01 | gold quality |
| adult mammalian kidney | UBERON:0000082 | 98.97 | gold quality |
| pancreas | UBERON:0001264 | 98.93 | gold quality |
| liver | UBERON:0002107 | 98.91 | gold quality |
| jejunum | UBERON:0002115 | 98.91 | gold quality |
| skeletal muscle tissue of rectus abdominis | UBERON:0004511 | 98.90 | gold quality |
| heart right ventricle | UBERON:0002080 | 98.89 | gold quality |
| ileal mucosa | UBERON:0000331 | 98.87 | gold quality |
| subcutaneous adipose tissue | UBERON:0002190 | 98.87 | gold quality |
| cerebellum | UBERON:0002037 | 98.81 | gold quality |
| cingulate cortex | UBERON:0003027 | 98.77 | gold quality |
| adipose tissue | UBERON:0001013 | 98.76 | gold quality |
| skeletal muscle tissue | UBERON:0001134 | 98.76 | gold quality |
Single-cell (SCXA)
Detected in 4 experiment(s), a significant marker in 3.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-MTAB-6701 | yes | 118.47 |
| E-HCAD-4 | yes | 40.77 |
| E-MTAB-6075 | no | 696.30 |
| E-ANND-3 | no | 0.00 |
HPA expression
RNA tissue specificity: Low tissue specificity
showing 60 of 79 HPA tissues / cells by nTPM:
| Tissue / cell | Axis | nTPM | Protein (IHC) |
|---|---|---|---|
| Skeletal muscle | tissue | 796.3 | medium |
| Tongue | tissue | 763.4 | |
| Liver | tissue | 357.4 | medium |
| Adrenal gland | tissue | 349.1 | high |
| Heart muscle | tissue | 319.1 | high |
| Duodenum | tissue | 288.6 | high |
| Small intestine | tissue | 255.0 | high |
| Pituitary gland | tissue | 208.3 | |
| Adipose tissue | tissue | 185.6 | low |
| Pancreas | tissue | 181.1 | medium |
| Choroid plexus | tissue | 171.6 | |
| Stomach 1 | tissue | 163.8 | high |
| Kidney | tissue | 160.9 | medium |
| Esophagus | tissue | 159.4 | medium |
| Parathyroid gland | tissue | 150.1 | high |
| Salivary gland | tissue | 149.5 | medium |
| Colon | tissue | 146.6 | high |
| Vagina | tissue | 125.7 | low |
| Rectum | tissue | 123.7 | medium |
| Seminal vesicle | tissue | 107.5 | medium |
| Placenta | tissue | 105.4 | medium |
| Urinary bladder | tissue | 104.3 | medium |
| Smooth muscle | tissue | 103.3 | low |
| Skin 1 | tissue | 98.5 | medium |
| Prostate | tissue | 98.0 | medium |
| Bone marrow | tissue | 97.7 | medium |
| Thyroid gland | tissue | 95.4 | medium |
| Breast | tissue | 94.5 | medium |
| Cervix | tissue | 89.1 | medium |
| Gallbladder | tissue | 87.0 | high |
| Lung | tissue | 81.2 | high |
| Thymus | tissue | 77.8 | |
| Tonsil | tissue | 77.8 | medium |
| Appendix | tissue | 74.3 | medium |
| Fallopian tube | tissue | 69.9 | medium |
| Ovary | tissue | 69.2 | low |
| Locus coeruleus | tissue | 66.0 | |
| Spleen | tissue | 62.6 | low |
| Endometrium 1 | tissue | 59.4 | medium |
| Hippocampus | tissue | 58.1 | medium |
| Lymph node | tissue | 48.7 | low |
| Nucleus accumbens | tissue | 48.0 | |
| Spinal cord | tissue | 42.6 | |
| Testis | tissue | 42.4 | medium |
| Epididymis | tissue | 42.0 | low |
| Postcentral gyrus | tissue | 40.8 | |
| Frontal cortex | tissue | 37.6 | |
| Caudate putamen | tissue | 36.2 | |
| Medulla oblongata | tissue | 35.7 | |
| Substantia nigra | tissue | 35.6 | |
| Thalamus | tissue | 33.9 | |
| Superior colliculi | tissue | 33.9 | |
| Pons | tissue | 33.4 | |
| Retina | tissue | 32.4 | |
| Midbrain | tissue | 31.8 | |
| Corpus callosum | tissue | 30.7 | |
| Hypothalamus | tissue | 28.1 | |
| Putamen | tissue | 27.2 | |
| Ventral forebrain | tissue | 25.9 | |
| Periaqueductal gray | tissue | 25.8 |
Brain sub-regions (HPA Brain Atlas): detected in 191; highest nTPM — Blood vessel (111.6), Anterior thalamic nucleus, ventral (93.3), Globus pallidus, externus (86.8), Posterior thalamic nucleus (86.5), Cerebellar nuclei (82.0).
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): TFAP2A
miRNA regulators (miRDB)
Targeting ACADVL by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific).
21 miRNAs:
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-302E | 99.96 | 70.74 | 2669 |
| HSA-MIR-124-3P | 99.89 | 73.74 | 3043 |
| HSA-MIR-506-3P | 99.89 | 73.55 | 3057 |
| HSA-MIR-302A-3P | 99.89 | 71.23 | 1777 |
| HSA-MIR-302B-3P | 99.89 | 71.23 | 1777 |
| HSA-MIR-302C-3P | 99.89 | 71.20 | 1778 |
| HSA-MIR-302D-3P | 99.89 | 71.25 | 1777 |
| HSA-MIR-605-3P | 99.88 | 69.22 | 1833 |
| HSA-MIR-373-3P | 99.84 | 70.68 | 1668 |
| HSA-MIR-520E-3P | 99.84 | 70.55 | 1698 |
| HSA-MIR-372-3P | 99.83 | 70.58 | 1691 |
| HSA-MIR-520A-3P | 99.83 | 70.59 | 1687 |
| HSA-MIR-520B-3P | 99.83 | 70.56 | 1699 |
| HSA-MIR-520C-3P | 99.83 | 70.56 | 1699 |
| HSA-MIR-520D-3P | 99.83 | 70.78 | 1676 |
| HSA-MIR-4690-5P | 99.65 | 66.24 | 813 |
| HSA-MIR-5582-5P | 99.27 | 71.42 | 1879 |
| HSA-MIR-4685-5P | 99.25 | 65.99 | 1563 |
| HSA-MIR-6837-5P | 99.25 | 65.47 | 1632 |
| HSA-MIR-4512 | 95.26 | 63.08 | 371 |
| HSA-MIR-4737 | 89.94 | 65.03 | 82 |
Functional genomics
gnomAD constraint: pLI 2.43e-22, LOEUF 1.08, missense Z 0.101 — population loss-of-function intolerance (pLI ≥ 0.9 = LoF-intolerant; lower LOEUF = more constrained). gnomAD
Regional missense constraint (gnomAD RMC): no regional variation along ENST00000356839 — one region, missense o/e 1.02.
ClinGen dosage: haploinsufficiency 30 (autosomal recessive), triplosensitivity 0 (no evidence). ClinGen Gene Dosage Map
Literature-anchored findings (GeneRIF, showing 36)
- coiled-coil motif bypasses chaperone and is a critical factor in the folding of gp37 (PMID:15576786)
- A new a unique mutation (IVS13+25G>A) is reported in a compound heterozygote carrying the 1748 C>T mutation in exon 18. (PMID:16464760)
- the bacterial expression system developed here will significantly advance our understanding of both the clinical aspects of VLCAD deficiency and the basic biochemistry of the enzyme (PMID:17374501)
- In asymptomatic mild VLCADdeficiency, a fat-reduced diet may not be necessary, whereas in later infancy and adolescence, strenuous physical exercise may require additional energy from medium-chain fat. (PMID:17457695)
- Report the course of disease in a pair of monozygotic twin sisters. (PMID:17514507)
- Bezafibrate, a widely prescribed hypolipidemic drug, cn be used for the correction of VLCAD deficiency and exemplifies the integration of molecular information in a therapeutic strategy (PMID:17999356)
- Loss of heterozygosity on 17p13 and down-regulation of ACADVL can be used to discriminate adrenal cortex neoplasms from adrenocortical adenoma. (PMID:18156936)
- This study confirms that VLCAD deficiency, although being less frequent than CPT II deficiency, should be systematically considered in the differential diagnosis of exercise-induced rhabdomyolysis. (PMID:19327992)
- Results suggest a novel regulatory mechanism for homeostatic VLCAD activity, whose dysregulation might be involved in the production of oxidative stress and in the pathogenesis of idiopathic pulmonary fibrosis. (PMID:19889959)
- Missense mutations in Very-Long-Chain Acyl-CoA Dehydrogenase is associated with inborn errors of lipid metabolism. (PMID:20060901)
- Down regulation of ACADVL is associated with cervical squamous cell carcinoma. (PMID:20099975)
- Case Report: missense mutation within the ACADVL gene responsible for very-long-chain acyl-CoA dehydrogenase deficiency and sudden infant death. (PMID:20107901)
- Analyzed potential rhabdomyolysis-susceptibility genes (RYR 1, CPT II, VLCAD and CYP 2D6) from autopsy samples of methamphetamine abusers; no obvious relationship between the genetic mutations observed in this study and rhabdomyolysis was seen. (PMID:20952238)
- Identification of 2 VLCAD mutations leads to precautions in the management of the children with VLCAD deficiency. (PMID:21932095)
- The expressions of LCHAD gene and protein are remarkably reduced in early onset severe preeclampsia and HELLP syndrome. (PMID:22093928)
- These findings support the importance of considering that mutations may be present in the ACADVL gene when a significant partial deficiency is found in CPTII activity, but no mutations in the CPT2 gene can be identified. (PMID:23169530)
- These results emphasize the importance of functional investigation of abnormal NBS or clinical testing suggestive but not diagnostic of very-long-chain acyl-CoA dehydrogenase . (PMID:23480858)
- 11 mutations in ACADVL gene in 7 patients, 7 reported (p.S22X, p.W427X, p.A213T, p.G222R, p.R450H, c.296-297delCA, c.1605+1G>T), 4 novel (p.S72F, p.Q100X, p.M437T, p.D466Y). p.R450H and p.D466Y (14.28%, 2/14 alleles) mutations identified in 2 alleles. (PMID:24801231)
- following variants should be considered likely pathogenic c.1273G > A (p.A425T), c.1001T > G (p.M334R), c.538G > A (p.A180T), c.640T > G (p.F214V), c.1076C > T (p.A359V), c.1019G > T (p.G340V), c.889_891delGAG (p.E297del), and c.1103A > C (p.Q368P); patients homozygous for the most common pathogenic variant, c.848T > C (p.V283A) can be expected to have a more benign clinical course (PMID:26385305)
- We retrospectively analyzed early outcomes for individuals who were diagnosed with VLCAD deficiency by NBS and describe initial presentations, diagnosis, clinical outcomes and treatment in a cohort of 52 individuals ages 1-18year. (PMID:27209629)
- There are currently no biochemical markers for prediction of disease severity and for the need for treatment in VLCAD deficiency. Mutation analysis may offer predictive value but this may not be robust enough for a large proportion of those mutations that have not been previously reported in clinically affected patients. (PMID:27246109)
- LCHAD and MCAD are differentially expressed in maternal and fetal tissues during normal late pregnancy, which may represent a metabolic adaptation in response to physiological maternal dyslipidemia during late pregnancy. (PMID:27871288)
- The authors provide novel insights into the cellular energy household of cells from HADHA/ACADVL patients and demonstrate for the first time a connection between fatty acid metabolism, mitochondrial morphology and reactive oxygen species in patients with these rare genetic disorders. (PMID:29459657)
- Sequencing of the ACADVL gene revealed that all individuals with activities below 24% were true Very long-chain acyl-CoA dehydrogenase deficiency (VLCADD) patients, individuals with residual activities between 24 and 27% carried either one or two mutations. Twenty new mutations could be identified and functionally classified based on their effect on enzyme function. (PMID:30194637)
- homozygous mutation in ACADVL associated with pediatric familial dilated cardiomyopathy (PMID:30840296)
- VLCADD is relatively rare in southern China, for which late-onset form is common (PMID:30950014)
- One potential hotspot ACADVL mutation in Chinese patients with very-long-chain acyl-coenzyme A dehydrogenase deficiency. (PMID:31794763)
- Mitochondrial energetic impairment in a patient with late-onset glutaric acidemia Type 2. (PMID:32804429)
- Novel ACADVL variants resulting in mitochondrial defects in long-chain acyl-CoA dehydrogenase deficiency. (PMID:33150772)
- Screening and follow-up results of fatty acid oxidative metabolism disorders in 608 818 newborns in Jining, Shandong province. (PMID:34704412)
- VLCAD inhibits the proliferation and invasion of hepatocellular cancer cells through regulating PI3K/AKT axis. (PMID:35001339)
- Characterization of exonic variants of uncertain significance in very long-chain acyl-CoA dehydrogenase identified through newborn screening. (PMID:35218577)
- Structural basis for defective membrane targeting of mutant enzyme in human VLCAD deficiency. (PMID:35760926)
- Treatment of VLCAD-Deficient Patient Fibroblasts with Peroxisome Proliferator-Activated Receptor delta Agonist Improves Cellular Bioenergetics. (PMID:36078043)
- Hypermethylation of ACADVL is involved in the high-intensity interval training-associated reduction of cardiac fibrosis in heart failure patients. (PMID:36894992)
- Specifications of the ACMG/AMP guidelines for ACADVL variant interpretation. (PMID:37549443)
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | acadvl | ENSDARG00000016687 |
| mus_musculus | Acadvl | ENSMUSG00000018574 |
| rattus_norvegicus | Acadvl | ENSRNOG00000018114 |
| drosophila_melanogaster | Acadvl | FBGN0034432 |
| caenorhabditis_elegans | WBGENE00017125 |
Paralogs (14): ACOX3 (ENSG00000087008), GCDH (ENSG00000105607), ACAD10 (ENSG00000111271), ACADL (ENSG00000115361), ACADM (ENSG00000117054), ACADS (ENSG00000122971), IVD (ENSG00000128928), ACAD8 (ENSG00000151498), ACOXL (ENSG00000153093), ACOX1 (ENSG00000161533), ACOX2 (ENSG00000168306), ACAD9 (ENSG00000177646), ACADSB (ENSG00000196177), ACAD11 (ENSG00000240303)
Mouse-model phenotypes
Observed phenotypes of the mouse ortholog (MGI:895149) from MGI (Alliance of Genome Resources) — knockout/mutant phenotypes, ranked by annotation count. 39 distinct phenotype terms.
| Mouse phenotype (MP) | Records |
|---|---|
| abnormal myocardial fiber morphology | 3 |
| increased susceptibility to induced morbidity/mortality | 3 |
| abnormal heart morphology | 2 |
| impaired glucose tolerance | 2 |
| abnormal amino acid level | 2 |
| decreased heart rate | 2 |
| impaired adaptive thermogenesis | 2 |
| abnormal adipose tissue morphology | 1 |
| hypoglycemia | 1 |
| increased body weight | 1 |
| abnormal cardiovascular system physiology | 1 |
| increased tumor incidence | 1 |
| premature death | 1 |
| abnormal lipid homeostasis | 1 |
| hepatic steatosis | 1 |
| dilated heart left ventricle | 1 |
| dilated cardiomyopathy | 1 |
| increased heart weight | 1 |
| fatigue | 1 |
| abnormal brown adipose tissue morphology | 1 |
| abnormal skeletal muscle fiber morphology | 1 |
| abnormal heart left ventricle morphology | 1 |
| increased circulating carnitine level | 1 |
| myocardial fiber degeneration | 1 |
| lethargy | 1 |
+14 more (showing top 25).
Additional cross-species homologs
Sequence homologs in species beyond Ensembl Compara’s model organisms, by Diamond local protein alignment (% sequence identity; best hit per species). Lower-identity rows are more distant homologs. The matched accessions’ gene symbols aren’t in biobtree yet, so each row shows the UniProt accession.
| Organism | UniProt | Identity | Method |
|---|---|---|---|
| Escherichia coli K-12 | P0A9U8 | 100.0% | Diamond |
| Escherichia coli CFT073 | P0A9U9 | 100.0% | Diamond |
| Escherichia coli O157:H7 | P0A9V0 | 100.0% | Diamond |
| Mycobacterium tuberculosis variant bovis AF2122/97 | P63428 | 100.0% | Diamond |
| Mycobacterium tuberculosis CDC1551 | P9WQF6 | 100.0% | Diamond |
| Mycobacterium tuberculosis H37Rv | P9WQF7 | 100.0% | Diamond |
| Pan troglodytes | A5A6I0 | 99.5% | Diamond |
| Pongo abelii | Q5RAS0 | 99.3% | Diamond |
| Macaca fascicularis | Q8HXX8 | 96.8% | Diamond |
| Caenorhabditis briggsae | A8XNF0 | 95.4% | Diamond |
| Sus scrofa | P41367 | 92.1% | Diamond |
| Bos taurus | Q3SZB4 | 92.1% | Diamond |
| Mycobacterium leprae TN | P46703 | 92.0% | Diamond |
| Oryza sativa Japonica Group | Q75IM9 | 86.7% | Diamond |
| Arabidopsis thaliana | Q9SWG0 | 86.7% | Diamond |
| Solanum tuberosum | Q9FS87 | 84.4% | Diamond |
| Cupriavidus necator N-1 | F8GVD3 | 81.4% | Diamond |
| Syntrophus aciditrophicus SB | Q2LQN9 | 73.4% | Diamond |
| Geobacter metallireducens GS-15 | Q39QF5 | 73.4% | Diamond |
| Dictyostelium discoideum | Q54R47 | 68.8% | Diamond |
| Acetobacterium woodii DSM 1030 | H6LGM6 | 66.4% | Diamond |
| Clostridium sporogenes ATCC 15579 | J7TF92 | 66.4% | Diamond |
| Paraburkholderia xenovorans LB400 | Q13PC1 | 64.9% | Diamond |
| Bacillus subtilis subsp. subtilis str. 168 | P45867 | 60.2% | Diamond |
| Clostridium acetobutylicum ATCC 824 | P52042 | 60.2% | Diamond |
| Megasphaera elsdenii | Q06319 | 56.9% | Diamond |
| Drechslerella dactyloides | A0AAD6NFV5 | 54.6% | Diamond |
| Anaerotignum propionicum | G3KIM8 | 53.8% | Diamond |
| Streptomyces coelicolor A3(2) | O54143 | 47.4% | Diamond |
| Pseudomonas protegens Pf-5 | Q4KCY6 | 47.4% | Diamond |
| Aromatoleum aromaticum EbN1 | Q5P5Z9 | 40.7% | Diamond |
| Desulfococcus multivorans | C3UVB0 | 40.4% | Diamond |
| Cereibacter sphaeroides | D3JV03 | 39.9% | Diamond |
| Alternaria alternata | Q50LG2 | 36.8% | Diamond |
| Thauera aromatica | Q9KJE8 | 35.5% | Diamond |
Genomic neighbors (locus context)
Genes flanking this one on the chromosome (NCBI/Entrez gene neighborhood). Positional context only — some neighbors share regulatory elements (bidirectional promoters, antisense/overlapping transcripts), but chromosomal adjacency is not itself a functional relationship (see Interactions for that).
| Symbol | Type | Entrez |
|---|---|---|
| CLDN7 | protein-coding | 1366 |
| DVL2 | protein-coding | 1856 |
| CTDNEP1 | protein-coding | 23399 |
| ELP5 | protein-coding | 23587 |
| MIR324 | ncRNA | 442898 |
| PHF23 | protein-coding | 79142 |
| DLG4 | protein-coding | 1742 |
| ASGR1 | protein-coding | 432 |
| GABARAP | protein-coding | 11337 |
Protein
Protein identifiers
Very long-chain acyl-CoA dehydrogenase, mitochondrial — P49748 (reviewed: P49748)
Alternative names: Long-chain acyl-CoA dehydrogenase, mitochondrial
All UniProt accessions (10): P49748, G3V1M7, J3KS89, J3KSR4, J3QKU9, J3QRJ8, J9JID6, K7EJW8, K7EMF8, K7EQP4
UniProt curated annotations — full annotation on UniProt →
Function. Catalyzes the first of the four reactions of the mitochondrial fatty acid beta-oxidation (FAO) pathway, which consists in the proR-proR stereospecific alpha, beta-dehydrogenation of fatty acyl-CoA thioesters using the electron transfer flavoprotein (ETF) as their physiologic electron acceptor, resulting in the formation of trans-2-enoyl-CoA ((2E)-enoyl-CoA). The mitochondrial FAO pathway is the major energy-producing process in tissues and is performed through cycles of four consecutive reactions. Each FAO cycle shortens the fatty acyl-CoA by two carbons, yielding one acetyl-CoA (for the citric acid cycle), one FADH(2), and one NADH (which donate electrons to the respiratory chain for ATP production). Among the different mitochondrial acyl-CoA dehydrogenases, very long-chain specific acyl-CoA dehydrogenase acts specifically on fatty acyl-CoAs with saturated 12 to 24 carbons long primary chains, but can also catalyze monounsaturated fatty acids such as oleate ((9Z)-octadecenoate), (9Z)-hexadecenoate, and others. Can use (4Z,7Z,10Z,13Z,16Z,19Z)-docosahexaenoate as substrate in vitro (which is not primarily used for energy but mainly beta-oxidized in the peroxisomes). In addition, based on its established catalytic mechanism, and combined genetic interaction or mutant phenotype evidence, it is predicted to act also on substrates that have not been tested experimentally but are metabolized by mitochondrial FAO, including long-chain unsaturated fatty acids such as linoleate (9Z,12Z-octadecadienoate), linolenate (9Z,12Z,15Z-octadecatrienoate), and others. Among the different mitochondrial acyl-CoA dehydrogenases, its FAO activity overlaps with that of ACAD9 and ACADL, but plays a primary role in tissues where it is the main long-chain ACAD expressed, such as the heart and skeletal muscle.
Subunit / interactions. Homodimer. Homodimerizes after import into the mitochondrion.
Subcellular location. Mitochondrion inner membrane Mitochondrion inner membrane.
Tissue specificity. Predominantly expressed in heart and skeletal muscle (at both mRNA and protein levels). Also detected in kidney and liver (at protein level).
Post-translational modifications. S-nitrosylation at Cys-237 in liver improves catalytic efficiency.
Disease relevance. Acyl-CoA dehydrogenase very long-chain deficiency (ACADVLD) [MIM:201475] An inborn error of mitochondrial fatty acid beta-oxidation which leads to impaired long-chain fatty acid beta-oxidation. It is clinically heterogeneous, with three major phenotypes: a severe childhood form characterized by early onset, high mortality and high incidence of cardiomyopathy; a milder childhood form with later onset, characterized by hypoketotic hypoglycemia, low mortality and rare cardiomyopathy; an adult form, with isolated skeletal muscle involvement, rhabdomyolysis and myoglobinuria, usually triggered by exercise or fasting. The disease is caused by variants affecting the gene represented in this entry.
Pathway. Lipid metabolism; mitochondrial fatty acid beta-oxidation.
Similarity. Belongs to the acyl-CoA dehydrogenase family.
Isoforms (3)
| UniProt ID | Names | Canonical? |
|---|---|---|
| P49748-1 | 1 | yes |
| P49748-2 | 2, DeltaEx3 VLCAD | |
| P49748-3 | 3 |
RefSeq proteins (4): NP_000009, NP_001029031, NP_001257376, NP_001257377 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR006089 | Acyl-CoA_DH_CS | Conserved_site |
| IPR006091 | AcylCoA_DH/ox_M | Domain |
| IPR009075 | AcylCo_DH/oxidase_C | Domain |
| IPR009100 | AcylCoA_DH/oxidase_NM_dom_sf | Homologous_superfamily |
| IPR013786 | AcylCoA_DH/ox_N | Domain |
| IPR036250 | AcylCo_DH-like_C | Homologous_superfamily |
| IPR037069 | AcylCoA_DH/ox_N_sf | Homologous_superfamily |
| IPR046373 | Acyl-CoA_Oxase/DH_mid-dom_sf | Homologous_superfamily |
| IPR049448 | ACAD9/ACADV-like_C | Domain |
Pfam: PF00441, PF02770, PF02771, PF21343
Enzyme classification (BRENDA)
- EC 1.3.8.8 — long-chain acyl-CoA dehydrogenase (BRENDA: 10 organisms, 91 substrates, 24 inhibitors, 53 Km, 6 kcat entries)
- EC 1.3.8.9 — very-long-chain acyl-CoA dehydrogenase (BRENDA: 3 organisms, 4 substrates, 0 inhibitors, 0 Km, 0 kcat entries)
Substrate kinetics (BRENDA)
19 substrates with measured Km, best-characterized 15. Km ranges are aggregated across organisms/conditions.
| Substrate | Km (mM) | Measurements |
|---|---|---|
| PALMITOYL-COA | 0.0009–0.78 | 8 |
| DECANOYL-COA | 0.0022–0.13 | 5 |
| DODECANOYL-COA | 0.0015–0.2 | 5 |
| OCTANOYL-COA | 0.0033–0.23 | 5 |
| STEAROYL-COA | 0.0037–0.29 | 5 |
| TETRADECANOYL-COA | 0.0023–0.38 | 5 |
| ELECTRON-TRANSFER FLAVOPROTEIN | 0.0008–0.012 | 4 |
| HEXANOYL-COA | 0.0063–0.55 | 3 |
| FAD | 0.0014–0.0025 | 2 |
| PHENAZINE METHOSULFATE | 1–1.1 | 2 |
| 4-CIS,7-CIS-DECADIENOYL-COA | 0.32 | 1 |
| 4-CIS-DECENOYL-COA | 0.25 | 1 |
| 5-CIS-DECENOYL-COA | 0.2 | 1 |
| 6-CIS-DECENOYL-COA | 0.32 | 1 |
| CIS,CIS,CIS,CIS-4,7,10,13-HEXADECATETRAENOYL-COA | 0.24 | 1 |
Catalyzed reactions (Rhea)
- a long-chain 2,3-saturated fatty acyl-CoA + oxidized [electron-transfer flavoprotein] + H(+) = a long-chain (2E)-enoyl-CoA + reduced [electron-transfer flavoprotein] (RHEA:17721)
- a very-long-chain 2,3-saturated fatty acyl-CoA + oxidized [electron-transfer flavoprotein] + H(+) = a very-long-chain (2E)-enoyl-CoA + reduced [electron-transfer flavoprotein] (RHEA:19181)
- oxidized [electron-transfer flavoprotein] + hexadecanoyl-CoA + H(+) = (2E)-hexadecenoyl-CoA + reduced [electron-transfer flavoprotein] (RHEA:43448)
- docosanoyl-CoA + oxidized [electron-transfer flavoprotein] + H(+) = (2E)-docosenoyl-CoA + reduced [electron-transfer flavoprotein] (RHEA:47228)
- tetracosanoyl-CoA + oxidized [electron-transfer flavoprotein] + H(+) = (2E)-tetracosenoyl-CoA + reduced [electron-transfer flavoprotein] (RHEA:47232)
- eicosanoyl-CoA + oxidized [electron-transfer flavoprotein] + H(+) = (2E)-eicosenoyl-CoA + reduced [electron-transfer flavoprotein] (RHEA:47236)
- octadecanoyl-CoA + oxidized [electron-transfer flavoprotein] + H(+) = (2E)-octadecenoyl-CoA + reduced [electron-transfer flavoprotein] (RHEA:47240)
- dodecanoyl-CoA + oxidized [electron-transfer flavoprotein] + H(+) = (2E)-dodecenoyl-CoA + reduced [electron-transfer flavoprotein] (RHEA:47296)
- oxidized [electron-transfer flavoprotein] + (9Z)-octadecenoyl-CoA + H(+) = (2E,9Z)-octadecadienoyl-CoA + reduced [electron-transfer flavoprotein] (RHEA:47300)
- (9Z)-hexadecenoyl-CoA + oxidized [electron-transfer flavoprotein] + H(+) = (2E,9Z)-hexadecadienoyl-CoA + reduced [electron-transfer flavoprotein] (RHEA:47304)
- tetradecanoyl-CoA + oxidized [electron-transfer flavoprotein] + H(+) = (2E)-tetradecenoyl-CoA + reduced [electron-transfer flavoprotein] (RHEA:47316)
- (7Z)-hexadecenoyl-CoA + oxidized [electron-transfer flavoprotein] + H(+) = (2E,7Z)-hexadecadienoyl-CoA + reduced [electron-transfer flavoprotein] (RHEA:47432)
UniProt features (136 total): sequence variant 47, helix 28, modified residue 23, strand 10, turn 6, mutagenesis site 6, binding site 5, region of interest 3, sequence conflict 3, splice variant 2, transit peptide 1, chain 1, active site 1
Structure
Experimental structures (PDB)
3 structures by resolution:
| PDB | Title | Method | Resolution (Å) |
|---|---|---|---|
| 7S7G | Crystal Structure Analysis of Human VLCAD | X-RAY DIFFRACTION | 1.34 |
| 2UXW | Crystal structure of human very long chain acyl-CoA dehydrogenase (ACADVL) | X-RAY DIFFRACTION | 1.45 |
| 3B96 | Structural Basis for Substrate Fatty-Acyl Chain Specificity: Crystal Structure of Human … | X-RAY DIFFRACTION | 1.91 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P49748-F1 | 90.65 | 0.85 |
Human Protein Atlas
Protein class: Enzymes, ENZYME proteins, Oxidoreductases, Metabolic proteins, Predicted intracellular proteins, Disease related genes, Potential drug targets, Human disease related genes, Congenital disorders of metabolism, Congenital disorders of lipid/glycolipid metabolism
Protein evidence: Evidence at protein level
Subcellular location (HPA, imaging): mitochondria; nucleoli; nucleoplasm
Antibody reliability (HPA): IH enhanced · IF supported
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (1)
| Position | Role |
|---|---|
| 462 | proton acceptor |
Ligand- & substrate-binding residues (5)
| Position | Role |
|---|---|
| 562 | FAD |
| 214–223 | FAD |
| 249–251 | FAD |
| 461–463 | substrate |
| 464–466 | FAD |
Post-translational modifications (23)
| Type | Positions |
|---|---|
| N6-acetyllysine | 51, 71, 239, 276, 278, 298, 331, 482, 550, 556 |
| N6-succinyllysine | 71, 195, 239, 276, 278, 331, 372, 482, 556, 639 |
| S-nitrosocysteine | 237 |
| Phosphoserine | 517, 522 |
Mutagenesis-validated functional residues (6)
| Position | Phenotype |
|---|---|
| 458 | decreased acyl-coa dehydrogenase activity. decreased affinity for acyl-coa. no effect on fad cofactor-binding. |
| 458 | loss of acyl-coa dehydrogenase activity. loss of fad cofactor-binding. |
| 458 | decreased acyl-coa dehydrogenase activity. no effect on affinity for acyl-coa. decreased fad cofactor-binding. |
| 462 | decreased acyl-coa dehydrogenase activity. no effect on affinity for acyl-coa. no effect on fad cofactor-binding. |
| 462 | loss of acyl-coa dehydrogenase activity. no effect on fad cofactor-binding. |
| 490 | changed substrate specificity with decreased affinity for tetradecanoyl-coa and hexadecanoyl-coa. |
Function
Pathways and Gene Ontology
Reactome pathways
2 curated (TAS) of 11; 0 disease pathways. Curated-first; evidence = TAS (manually curated) vs IEA (electronic inference).
11 pathways:
| ID | Pathway | Evidence |
|---|---|---|
| R-HSA-77305 | Beta oxidation of palmitoyl-CoA to myristoyl-CoA | curated |
| R-HSA-381038 | XBP1(S) activates chaperone genes | curated |
| R-HSA-8953897 | Cellular responses to stimuli | — |
| R-HSA-2262752 | Cellular responses to stress | — |
| R-HSA-8978868 | Fatty acid metabolism | — |
| R-HSA-381070 | IRE1alpha activates chaperones | — |
| R-HSA-1430728 | Metabolism | — |
| R-HSA-556833 | Metabolism of lipids | — |
| R-HSA-77289 | Mitochondrial Fatty Acid Beta-Oxidation | — |
| R-HSA-381119 | Unfolded Protein Response (UPR) | — |
| R-HSA-77286 | mitochondrial fatty acid beta-oxidation of saturated fatty acids | — |
MSigDB gene sets: 398 (showing top):
GOBP_LIPID_MODIFICATION, MODULE_93, GOBP_FATTY_ACID_CATABOLIC_PROCESS, GOBP_EPITHELIUM_DEVELOPMENT, REACTOME_UNFOLDED_PROTEIN_RESPONSE_UPR, GOBP_RESPONSE_TO_COLD, PID_HNF3B_PATHWAY, GOBP_NEGATIVE_REGULATION_OF_LIPID_METABOLIC_PROCESS, GOMF_OXIDOREDUCTASE_ACTIVITY_ACTING_ON_THE_CH_CH_GROUP_OF_DONORS, ENK_UV_RESPONSE_KERATINOCYTE_UP, GRAESSMANN_APOPTOSIS_BY_DOXORUBICIN_UP, GOBP_NEGATIVE_REGULATION_OF_LIPID_BIOSYNTHETIC_PROCESS, MCBRYAN_PUBERTAL_TGFB1_TARGETS_UP, LUCAS_HNF4A_TARGETS_UP, GOBP_MONOCARBOXYLIC_ACID_METABOLIC_PROCESS
GO Biological Process (11): temperature homeostasis (GO:0001659), energy derivation by oxidation of organic compounds (GO:0015980), epithelial cell differentiation (GO:0030855), fatty acid beta-oxidation using acyl-CoA dehydrogenase (GO:0033539), negative regulation of fatty acid biosynthetic process (GO:0045717), negative regulation of fatty acid oxidation (GO:0046322), regulation of cholesterol metabolic process (GO:0090181), lipid metabolic process (GO:0006629), fatty acid metabolic process (GO:0006631), fatty acid beta-oxidation (GO:0006635), carboxylic acid metabolic process (GO:0019752)
GO Molecular Function (9): fatty-acyl-CoA binding (GO:0000062), acyl-CoA dehydrogenase activity (GO:0003995), long-chain fatty acyl-CoA dehydrogenase activity (GO:0004466), very-long-chain fatty acyl-CoA dehydrogenase activity (GO:0017099), identical protein binding (GO:0042802), flavin adenine dinucleotide binding (GO:0050660), protein binding (GO:0005515), oxidoreductase activity (GO:0016491), oxidoreductase activity, acting on the CH-CH group of donors (GO:0016627)
GO Cellular Component (5): mitochondrion (GO:0005739), mitochondrial inner membrane (GO:0005743), mitochondrial matrix (GO:0005759), mitochondrial membrane (GO:0031966), mitochondrial nucleoid (GO:0042645)
Reactome top-level categories
9 top-level categories:
| Category | Pathways |
|---|---|
| IRE1alpha activates chaperones | 1 |
| mitochondrial fatty acid beta-oxidation of saturated fatty acids | 1 |
| Cellular responses to stimuli | 1 |
| Unfolded Protein Response (UPR) | 1 |
| Cellular responses to stress | 1 |
| Metabolism | 1 |
| Mitochondrial Fatty Acid Beta-Oxidation | 1 |
| Fatty acid metabolism | 1 |
| Metabolism of lipids | 1 |
GO top-level categories
41 GO namespaces:
| Category | Terms |
|---|---|
| acyl-CoA dehydrogenase activity | 3 |
| mitochondrion | 3 |
| negative regulation of fatty acid metabolic process | 2 |
| fatty acid oxidation | 2 |
| multicellular organismal-level homeostasis | 1 |
| generation of precursor metabolites and energy | 1 |
| cell differentiation | 1 |
| epithelium development | 1 |
| fatty acid beta-oxidation | 1 |
| fatty acid biosynthetic process | 1 |
| regulation of fatty acid biosynthetic process | 1 |
| negative regulation of lipid biosynthetic process | 1 |
| regulation of fatty acid oxidation | 1 |
| cholesterol metabolic process | 1 |
| regulation of steroid metabolic process | 1 |
| regulation of small molecule metabolic process | 1 |
| primary metabolic process | 1 |
| lipid metabolic process | 1 |
| monocarboxylic acid metabolic process | 1 |
| fatty acid catabolic process | 1 |
| fatty acid ligase activity | 1 |
| oxoacid metabolic process | 1 |
| acyl-CoA binding | 1 |
| fatty acid derivative binding | 1 |
| oxidoreductase activity, acting on the CH-CH group of donors, with a flavin as acceptor | 1 |
| protein binding | 1 |
| nucleotide binding | 1 |
| anion binding | 1 |
| binding | 1 |
| catalytic activity | 1 |
| oxidoreductase activity | 1 |
| cytoplasm | 1 |
| intracellular membrane-bounded organelle | 1 |
| organelle inner membrane | 1 |
| mitochondrial membrane | 1 |
| intracellular organelle lumen | 1 |
| mitochondrial envelope | 1 |
| organelle membrane | 1 |
| mitochondrial matrix | 1 |
| nucleoid | 1 |
| intracellular membraneless organelle | 1 |
Experimentally-supported GO annotations
GO terms backed by direct experimental evidence (ECO experimental codes) — 10 of 25 annotations. The rest are phylogenetic / computational / electronic (IEA).
10 experimentally-supported GO terms:
| GO term | NS | Evidence |
|---|---|---|
| epithelial cell differentiation | BP | expression pattern |
| fatty acid beta-oxidation using acyl-CoA dehydrogenase | BP | direct assay |
| mitochondrial membrane | CC | direct assay |
| mitochondrial nucleoid | CC | direct assay |
| mitochondrion | CC | direct assay |
| acyl-CoA dehydrogenase activity | MF | mutant phenotype |
| flavin adenine dinucleotide binding | MF | direct assay |
| identical protein binding | MF | direct assay |
| long-chain fatty acyl-CoA dehydrogenase activity | MF | direct assay |
| very-long-chain fatty acyl-CoA dehydrogenase activity | MF | direct assay |
Protein interactions and networks
STRING
showing 15 of 2,404 interactions by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| ACADVL | HADHA | P40939 | 909 |
| ACADVL | CPT2 | P23786 | 905 |
| ACADVL | ACSL1 | P33121 | 770 |
| ACADVL | HADHB | P55084 | 758 |
| ACADVL | HADH | Q16836 | 741 |
| ACADVL | ACAA2 | P42765 | 716 |
| ACADVL | SLC25A20 | O43772 | 702 |
| ACADVL | CPT1A | P50416 | 698 |
| ACADVL | ETFDH | Q16134 | 688 |
| ACADVL | ACOX1 | Q15067 | 673 |
| ACADVL | ECHS1 | P30084 | 663 |
| ACADVL | PLIN2 | Q99541 | 657 |
| ACADVL | ECH1 | Q13011 | 651 |
| ACADVL | CPT1B | Q92523 | 623 |
| ACADVL | PPARA | Q07869 | 613 |
IntAct
Human interaction partners of ACADVL in IntAct, one row per partner (best MIscore; records = supporting IntAct interaction records).
10 partners by confidence:
| Partner | Interaction type | MIscore | Records |
|---|---|---|---|
| TAF1B | physical association | 0.560 | 3 |
| APC | association | 0.530 | 1 |
| TRAT1 | association | 0.530 | 1 |
| SURF1 | physical association | 0.400 | 1 |
| GPHN | physical association | 0.370 | 1 |
| RPSA | physical association | 0.370 | 1 |
| EEF2K | association | 0.350 | 1 |
| EGFR | association | 0.350 | 1 |
| HIBCH | association | 0.350 | 1 |
| NPR2 | association | 0.350 | 1 |
BioGRID (206 interactions; top human partners by supporting records): SURF1 (Affinity Capture-MS; 4 records), ECSIT (Affinity Capture-MS; 3 records), HIBCH (Affinity Capture-MS; 3 records), HMGCL (Affinity Capture-MS; 3 records), APC (Affinity Capture-MS; 2 records), CLASRP (Affinity Capture-MS; 2 records), CLPP (Proximity Label-MS; 2 records), CS (Proximity Label-MS; 2 records), DHRS4 (Affinity Capture-MS; 2 records), FAM60A (Affinity Capture-MS; 2 records), MRM1 (Affinity Capture-MS; 2 records), NDUFA13 (Affinity Capture-MS; 2 records), NPPA (Affinity Capture-MS; 2 records), PARK2 (Affinity Capture-MS; 2 records), PDE4DIP (Affinity Capture-MS; 2 records)
SIGNOR signaling
5 signaling interactions:
| A | Effect | B | Mechanism |
|---|---|---|---|
| ACADVL | “down-regulates quantity” | palmitoyl-CoA(4-) | “chemical modification” |
| ACADVL | “down-regulates quantity” | FAD(3-) | “chemical modification” |
| ACADVL | “up-regulates quantity” | (E)-hexadec-2-enoyl-CoA(4-) | “chemical modification” |
| ACADVL | “up-regulates quantity” | FADH2(2-) | “chemical modification” |
| PRKACA | “up-regulates activity” | ACADVL | phosphorylation |
Disease & clinical
Genetic variants
Variant evidence for ACADVL: 2,173 ClinVar records (477 pathogenic / likely pathogenic); 287 ClinGen expert-panel interpretations; 2 GWAS associations. Per-variant detail is on Sugi Variant.
ClinVar
2,173 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 148 |
| Likely pathogenic | 329 |
| Uncertain significance | 646 |
| Likely benign | 808 |
| Benign | 35 |
Top pathogenic / likely-pathogenic (15)
Showing the 15 best-reviewed of 477 pathogenic / likely-pathogenic ClinVar records, ranked by ClinVar review status (expert panel → multiple submitters → single submitter), then by number of submitting labs.
| Variant ID | HGVS | Classification | Review | Submitters |
|---|---|---|---|---|
| 21025 | NM_000018.4(ACADVL):c.848T>C (p.Val283Ala) | Pathogenic | reviewed by expert panel | 39 |
| 203585 | NM_000018.4(ACADVL):c.1376G>A (p.Arg459Gln) | Pathogenic | reviewed by expert panel | 19 |
| 21016 | NM_000018.4(ACADVL):c.1322G>A (p.Gly441Asp) | Pathogenic | reviewed by expert panel | 17 |
| 1624 | NM_000018.4(ACADVL):c.343del | Pathogenic | reviewed by expert panel | 16 |
| 166638 | NM_000018.4(ACADVL):c.65C>A (p.Ser22Ter) | Pathogenic | reviewed by expert panel | 14 |
| 189116 | NM_000018.4(ACADVL):c.298_299del (p.Gln100fs) | Pathogenic | reviewed by expert panel | 14 |
| 1626 | NM_000018.4(ACADVL):c.385GAG[1] (p.Glu130del) | Pathogenic | reviewed by expert panel | 13 |
| 188884 | NM_000018.4(ACADVL):c.685C>T (p.Arg229Ter) | Pathogenic | reviewed by expert panel | 10 |
| 194317 | NM_000018.4(ACADVL):c.1357C>T (p.Arg453Ter) | Pathogenic | reviewed by expert panel | 9 |
| 370279 | NM_000018.4(ACADVL):c.1077+2T>C | Pathogenic | reviewed by expert panel | 9 |
| 370686 | NM_000018.4(ACADVL):c.1077_1077+1delinsCAC | Pathogenic | reviewed by expert panel | 9 |
| 203594 | NM_000018.4(ACADVL):c.343-1G>A | Pathogenic | reviewed by expert panel | 8 |
| 370717 | NM_000018.4(ACADVL):c.644_647del (p.Phe214_Cys215insTer) | Pathogenic | reviewed by expert panel | 8 |
| 422995 | NM_000018.4(ACADVL):c.428_467del (p.Gly143fs) | Pathogenic | reviewed by expert panel | 8 |
| 818026 | NM_000018.4(ACADVL):c.1145del (p.Lys382fs) | Pathogenic | reviewed by expert panel | 8 |
Per-variant reference — Sugi Variant
Explore ACADVL’s pathogenic and likely-pathogenic variants individually — each with its ClinVar classification and conditions, applied ACMG criteria (ClinGen expert panel, where curated), the calibrated in-silico predictors (AlphaMissense, REVEL, SaProt, conservation), gnomAD frequency, and the predictor-disagreement QC signal — on Sugi Variant.
ClinGen expert-panel interpretations (287)
Expert ACMG interpretations from ACADVL VCEP for very long chain acyl-CoA dehydrogenase deficiency — a higher-authority tier than individual ClinVar submissions.
| Assertion | Variants |
|---|---|
| Pathogenic | 42 |
| Likely Pathogenic | 133 |
| Uncertain Significance | 73 |
| Likely Benign | 26 |
| Benign | 13 |
SpliceAI
Top 10 splice-impact sites by Δscore (adjacent positions with the same effect merged into one range; 35 predictions of 1,646):
| Position(s) | Effect | Δscore | Sites |
|---|---|---|---|
| 17:7220761 | acceptor_gain | 1.0000 | |
| 17:7220764–7220765 | acceptor_loss | 1.0000 | 5 |
| 17:7220831–7220832 | donor_loss | 1.0000 | 5 |
| 17:7222303–7222304 | donor_loss | 1.0000 | 5 |
| 17:7222653–7222654 | acceptor_gain | 1.0000 | 2 |
| 17:7223622 | acceptor_gain | 1.0000 | |
| 17:7223966–7223967 | acceptor_loss | 1.0000 | 5 |
| 17:7224070–7224071 | donor_loss | 1.0000 | 5 |
| 17:7224236 | donor_gain | 1.0000 | |
| 17:7224319–7224320 | acceptor_loss | 1.0000 | 5 |
AlphaMissense
1,468 missense substitutions predicted likely pathogenic (of 4,263 scored), across 393 residues. Top 20 hotspot residues, ranked by the number of likely-pathogenic substitutions (of those reachable by a single-nucleotide change), then by mean score:
| Residue | Likely-pathogenic substitutions | Mean am_pathogenicity | Max am_pathogenicity |
|---|---|---|---|
| F461 | 8 | 0.982 | 0.998 |
| D454 | 8 | 0.980 | 0.994 |
| D224 | 8 | 0.975 | 0.994 |
| F262 | 8 | 0.967 | 0.995 |
| F330 | 8 | 0.966 | 0.995 |
| D405 | 8 | 0.957 | 0.991 |
| D171 | 8 | 0.956 | 0.978 |
| H181 | 8 | 0.941 | 0.988 |
| F282 | 8 | 0.933 | 0.997 |
| D431 | 8 | 0.929 | 0.984 |
| F369 | 8 | 0.922 | 0.995 |
| F458 | 8 | 0.911 | 0.979 |
| D466 | 8 | 0.890 | 0.970 |
| M404 | 8 | 0.860 | 0.962 |
| F88 | 8 | 0.827 | 0.951 |
| F214 | 7 | 0.995 | 0.999 |
| R341 | 7 | 0.994 | 0.999 |
| E462 | 7 | 0.988 | 0.998 |
| W249 | 7 | 0.986 | 0.998 |
| E218 | 7 | 0.984 | 0.995 |
HPA cancer prognostics
RNA cancer specificity: Low cancer specificity
Human Protein Atlas survival analysis — favorable = higher expression predicts better survival.
2 prognostic cancer types:
| Cancer | Prognostic | p-value |
|---|---|---|
| Kidney Renal Clear Cell Carcinoma (TCGA) | favorable | 7.42e-08 |
| Liver Hepatocellular Carcinoma (validation) | favorable | 0.000689 |
Disease associations
OMIM: gene MIM:609575 | disease phenotypes: MIM:201475, MIM:600001, MIM:618793, MIM:151623, MIM:609266, MIM:261800
GenCC curated gene-disease
1 curated gene-disease records:
| Disease | Classification | Inheritance | Records |
|---|---|---|---|
| very long chain acyl-CoA dehydrogenase deficiency | Definitive | Autosomal recessive | 6 |
ClinGen Gene-Disease Validity
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
1 validity classifications:
| Disease | Classification | Inheritance |
|---|---|---|
| very long chain acyl-CoA dehydrogenase deficiency | Definitive | AR |
Genomics England panels (PanelApp)
Clinical diagnostic gene panels including this gene (15 panels, 11 green/diagnostic-grade). Confidence: green = diagnostic, amber = moderate.
15 panels:
| Panel | Rating |
|---|---|
| Acute rhabdomyolysis | green |
| DDG2P | green |
| Fetal anomalies | green |
| Hyperammonaemia | green |
| Likely inborn error of metabolism | green |
| Limb girdle muscular dystrophies, myofibrillar myopathies and distal myopathies | green |
| Other rare neuromuscular disorders | green |
| Paediatric or syndromic cardiomyopathy | green |
| Rhabdomyolysis and metabolic muscle disorders | green |
| Undiagnosed metabolic disorders | green |
| Unexplained death in infancy and sudden unexplained death in childhood | green |
| Hypotonic infant | amber |
| Intellectual disability | amber |
| Leukodystrophy, childhood onset | amber |
| Paediatric disorders | amber |
Mondo (7): very long chain acyl-CoA dehydrogenase deficiency (MONDO:0008723), pancreatic hypoplasia-diabetes-congenital heart disease syndrome (MONDO:0010802), intellectual developmental disorder 62 (MONDO:0032919), myopathy (MONDO:0005336), Li-Fraumeni syndrome (MONDO:0018875), cardiac rhythm disease (MONDO:0007263), isolated Pierre-Robin syndrome (MONDO:0009869)
Orphanet (4): Very long chain acyl-CoA dehydrogenase deficiency (Orphanet:26793), Pancreatic hypoplasia-diabetes-congenital heart disease syndrome (Orphanet:2255), Li-Fraumeni syndrome (Orphanet:524), Isolated Pierre Robin sequence (Orphanet:718)
HPO phenotypes
showing 60 of 66 phenotypes (HPO-id order):
| HPO | Term |
|---|---|
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000252 | Microcephaly |
| HP:0000256 | Macrocephaly |
| HP:0000952 | Jaundice |
| HP:0001252 | Hypotonia |
| HP:0001254 | Lethargy |
| HP:0001324 | Muscle weakness |
| HP:0001397 | Hepatic steatosis |
| HP:0001404 | Hepatocellular necrosis |
| HP:0001405 | Periportal fibrosis |
| HP:0001513 | Obesity |
| HP:0001518 | Small for gestational age |
| HP:0001522 | Death in infancy |
| HP:0001545 | Anteriorly placed anus |
| HP:0001629 | Ventricular septal defect |
| HP:0001631 | Atrial septal defect |
| HP:0001639 | Hypertrophic cardiomyopathy |
| HP:0001640 | Cardiomegaly |
| HP:0001644 | Dilated cardiomyopathy |
| HP:0001645 | Sudden cardiac death |
| HP:0001649 | Tachycardia |
| HP:0001655 | Patent foramen ovale |
| HP:0001657 | Prolonged QT interval |
| HP:0001663 | Ventricular fibrillation |
| HP:0001678 | Atrioventricular block |
| HP:0001698 | Pericardial effusion |
| HP:0001942 | Metabolic acidosis |
| HP:0001958 | Nonketotic hypoglycemia |
| HP:0001985 | Hypoketotic hypoglycemia |
| HP:0001987 | Hyperammonemia |
| HP:0002013 | Vomiting |
| HP:0002020 | Gastroesophageal reflux |
| HP:0002045 | Hypothermia |
| HP:0002069 | Bilateral tonic-clonic seizure |
| HP:0002090 | Pneumonia |
| HP:0002098 | Respiratory distress |
| HP:0002240 | Hepatomegaly |
| HP:0002280 | Enlarged cisterna magna |
| HP:0002572 | Episodic vomiting |
| HP:0002789 | Tachypnea |
| HP:0002876 | Episodic tachypnea |
| HP:0002901 | Hypocalcemia |
| HP:0002910 | Elevated circulating hepatic transaminase concentration |
| HP:0003075 | Hypoproteinemia |
| HP:0003215 | Elevated urinary dicarboxylic acid level |
| HP:0003234 | Decreased circulating carnitine concentration |
| HP:0003236 | Elevated circulating creatine kinase activity |
| HP:0003394 | Muscle spasm |
| HP:0003552 | Muscle stiffness |
| HP:0003593 | Infantile onset |
| HP:0003623 | Neonatal onset |
| HP:0003738 | Exercise-induced myalgia |
| HP:0004756 | Ventricular tachycardia |
| HP:0005943 | Respiratory arrest |
| HP:0008305 | Exercise-induced myoglobinuria |
| HP:0008947 | Floppy infant |
| HP:0009045 | Exercise-induced rhabdomyolysis |
| HP:0011123 | Inflammatory abnormality of the skin |
| HP:0011675 | Arrhythmia |
| HP:0011968 | Feeding difficulties |
GWAS associations
2 associations:
| Study | Trait | p-value |
|---|---|---|
| GCST012442_35 | Age-related hearing impairment | 9e-9 |
| GCST009391_586 | Metabolite levels | 7e-6 |
EFO canonical traits (from GWAS)
1 canonical traits:
| EFO ID | Trait name |
|---|---|
| EFO:0009769 | histidine measurement |
MeSH disease descriptors
3 disease descriptors:
| Descriptor | Name | Tree numbers |
|---|---|---|
| D016864 | Li-Fraumeni Syndrome | C04.700.600; C16.320.700.600; C18.452.284.520 |
| D010855 | Pierre Robin Syndrome | C05.500.460.606; C05.660.207.540.460.606; C07.320.440.606; C07.650.500.460.606; C16.131.621.207.540.460.606; C16.131.850.500.460.606 |
| C564011 | Pancreatic Hypoplasia, Congenital, with Diabetes Mellitus and Congenital Heart Disease *(supp.)* |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL4105892 (SINGLE PROTEIN)
Molecules with ChEMBL bioactivity
Phase ≥1, by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 1,586 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).
1 molecules by phase:
| Molecule | Name | Phase | Patents |
|---|---|---|---|
| CHEMBL230011 | TG100-115 | 2 | 1,586 |
PharmGKB: 1 entry (CPIC guideline: no)
Binding affinities (BindingDB)
1 measured of 1 human assays (2 total across all organisms); most potent 1 below. Values come from heterogeneous assays and are not directly comparable.
| Ligand | Measure | Value |
|---|---|---|
| CHEMBL5653589 | KD | 1440 nM |
ChEMBL bioactivities
6 potent at pChembl≥5 of 6 total, top 6 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 7.29 | Kd | 50.99 | nM | CHEMBL5653589 |
| 7.29 | ED50 | 50.99 | nM | CHEMBL5653589 |
| 6.68 | Kd | 210.8 | nM | CHEMBL3752910 |
| 6.68 | ED50 | 210.8 | nM | CHEMBL3752910 |
| 5.77 | Kd | 1689 | nM | TG100-115 |
| 5.28 | Kd | 5313 | nM | CHEMBL4084193 |
PubChem BioAssay actives
3 with measured affinity, of 244 total; 3 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| 4-methyl-3-[(2-methyl-6-pyridin-3-ylpyrazolo[3,4-d]pyrimidin-4-yl)amino]-N-[3-(trifluoromethyl)phenyl]benzamide | 2147780: Binding affinity to human ACADVL incubated for 45 mins by Kinobead based pull down assay | kd | 0.0510 | uM |
| 4-methyl-3-[(1-methyl-6-pyridin-3-ylpyrazolo[3,4-d]pyrimidin-4-yl)amino]-N-[3-(trifluoromethyl)phenyl]benzamide | 2147780: Binding affinity to human ACADVL incubated for 45 mins by Kinobead based pull down assay | kd | 0.2108 | uM |
| 3-[2,4-diamino-7-(3-hydroxyphenyl)pteridin-6-yl]phenol | 1424894: Kinobeads (epsilon), multiple immobilized ATP-competitive broad spectrum kinase inhibitors, used to assess residual binding of ~300 proteins simultaneously from cell lysate in the presence of a compound. Quantitative readout performed by mass spectrometry. | kd | 1.6890 | uM |
CTD chemical–gene interactions
77 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| bisphenol A | affects cotreatment, increases methylation, decreases expression, increases expression, affects expression | 4 |
| Tetrachlorodibenzodioxin | increases expression | 4 |
| Valproic Acid | affects expression, decreases expression, increases expression | 4 |
| sodium arsenate | decreases expression, increases abundance | 2 |
| sodium arsenite | affects cotreatment, decreases expression, increases abundance, increases expression | 2 |
| perfluorooctanoic acid | increases expression | 2 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | increases expression, affects cotreatment | 2 |
| Acetaminophen | decreases expression, increases expression | 2 |
| Arsenic | decreases expression, increases abundance, affects cotreatment, increases expression | 2 |
| Bezafibrate | decreases oxidation, decreases reaction, increases activity, increases expression, affects response to substance | 2 |
| Diethylhexyl Phthalate | increases expression, affects response to substance | 2 |
| Smoke | decreases expression, increases abundance, increases expression | 2 |
| Tretinoin | increases expression | 2 |
| aristolochic acid I | increases expression | 1 |
| bisphenol F | increases expression | 1 |
| quinone | decreases expression | 1 |
| lasiocarpine | decreases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| fenofibric acid | affects binding, increases expression | 1 |
| pirinixic acid | increases expression | 1 |
| 2,5,2’,5’-tetrachlorobiphenyl | decreases expression | 1 |
| pyrogallol 1,3-dimethyl ether | affects cotreatment, affects localization, increases expression | 1 |
| dioctyl adipate | affects response to substance, increases expression | 1 |
| beta-lapachone | decreases expression, increases expression | 1 |
| tanshinone | increases expression | 1 |
| ciglitazone | affects binding, increases expression | 1 |
| perfluorooctane sulfonic acid | increases expression | 1 |
| azoxystrobin | decreases expression | 1 |
| 2-palmitoylglycerol | increases expression | 1 |
| GW 4064 | affects cotreatment, decreases expression | 1 |
ChEMBL screening assays
2 unique, capped per target: 2 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL3991607 | Binding | Kinobeads (epsilon), multiple immobilized ATP-competitive broad spectrum kinase inhibitors, used to assess residual binding of ~300 proteins simultaneously from cell lysate in the presence of a compound. Quantitative readout performed by ma | The target landscape of clinical kinase drugs. — *Science* |
Cellosaurus cell lines
9 cell lines: 4 finite cell line, 4 cancer cell line, 1 transformed cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_4F81 | GM17475 | Finite cell line | Female |
| CVCL_7450 | GM06127 | Finite cell line | Male |
| CVCL_A2VJ | GM26193 | Finite cell line | Male |
| CVCL_A2VK | GM26194 | Finite cell line | Female |
| CVCL_B2R4 | Abcam HEK293T ACADVL KO | Transformed cell line | Female |
| CVCL_E1PC | HAP1 ACADVL (-) 1 | Cancer cell line | Male |
| CVCL_E1PD | HAP1 ACADVL (-) 2 | Cancer cell line | Male |
| CVCL_E1PE | HAP1 ACADVL (-) 3 | Cancer cell line | Male |
| CVCL_E1PF | HAP1 ACADVL (-) 4 | Cancer cell line | Male |
Clinical trials (associated diseases)
Via MONDO — disease-level, not drug-specific.
showing 60 of 290 trials:
| NCT | Phase | Status | Title |
|---|---|---|---|
| NCT00120055 | Phase 4 | COMPLETED | Association Between Systemic Exposure of Atorvastatin and Metabolites and Atorvastatin-induced Myotoxicity |
| NCT03633565 | Phase 4 | UNKNOWN | Comparative Study of Strategies for Management of Duchenne Myopathy (DM) |
| NCT00520494 | Phase 4 | COMPLETED | Efficacy and Safety of Vivaglobin® in Previously Untreated Patients With Primary Immunodeficiency |
| NCT01289847 | Phase 4 | COMPLETED | A Study to Find Out How Safe and Effective Gammaplex® is in Young People With Primary Immunodeficiency |
| NCT01946906 | Phase 4 | COMPLETED | The Rifaximin Study in CVID |
| NCT05193552 | Phase 4 | RECRUITING | Usage of Spirometry in Managing IgG Therapy in CVID With Airway Disease |
| NCT00146822 | Phase 4 | COMPLETED | REFLEx Study (ENDOTAK RELIANCE G Evaluation of Handling and Electrical Performance |
| NCT00187239 | Phase 4 | COMPLETED | Reduce Ventricular Pacing in Dual Chamber Implantable Cardioverter Defibrillators Using AutoIntrinsic Conduction Search Study |
| NCT00247533 | Phase 4 | UNKNOWN | Cerebral Artery Stenosis, Coronary Artery Disease and Arrhythmia |
| NCT00282620 | Phase 4 | UNKNOWN | Magnesium to Reduce Implantable Cardioverter Defibrillator (ICD) Shocks and Improve Patient’s Quality of Life. |
| NCT00290056 | Phase 4 | UNKNOWN | Effect of Supplemental Intake of Omega-3 Polyunsaturated Fatty Acids on the Rate and Complexity of Spontaneously Occurring Ventricular and Supraventricular Arrhythmias in Patients With Implantable Cardioverter Defibrillator (ICD) - A Randomized Clinical Trial |
| NCT00313443 | Phase 4 | COMPLETED | Concentrations of Amiodarone in Fat Tissue During Chronic Treatment |
| NCT00457340 | Phase 4 | COMPLETED | Atorvastatin For The Reduction Of Ventricular Arrhythmias |
| NCT00507390 | Phase 4 | WITHDRAWN | Omega 3 Polyunsaturated Fatty Acid Supplements (PUFAs) and Microvolt T Wave Alternans (TWA) in Patients With Ventricular Arrhythmia |
| NCT00575523 | Phase 4 | COMPLETED | Atropine for Prevention of Dysrhythmias Caused by Percutaneous Ethanol Instillation for Hepatoma Therapy |
| NCT00579098 | Phase 4 | COMPLETED | The Use of Statins Following a Left Atrial Catheter Ablation Procedure to Prevent Atrial Fibrillation |
| NCT01613092 | Phase 4 | COMPLETED | Prevention of Arrhythmia Device Infection Trial (PADIT) |
| NCT01628666 | Phase 4 | COMPLETED | Prevention of Arrhythmia Device Infection Trial (PADIT) |
| NCT01717469 | Phase 4 | UNKNOWN | Safety and the Effects of Isolated Left Ventricular Pacing in Patients With Bradyarrhythmias |
| NCT01819064 | Phase 4 | COMPLETED | Heart Rate Response to Atropine Doses Less Than 0.1mg IV to Anesthetized Infants |
| NCT01834872 | Phase 4 | UNKNOWN | Safety and Feasibility of Arrhythmia Ablation Using the Amigo Remote Robotic System as Compared With Manual Ablation |
| NCT01841242 | Phase 4 | COMPLETED | Comparison of Alcoholic Chlorhexidine 2% Versus Alcoholic Povidone Iodine for Infections Prevention With Cardiac Resynchronization Therapy Device Implantation |
| NCT01991223 | Phase 4 | UNKNOWN | Dexmedetomidine for Catheter-related Bladder Discomfort |
| NCT02045173 | Phase 4 | COMPLETED | Automate Detection of Sleep Apnea by ApneascanTM |
| NCT02203630 | Phase 4 | TERMINATED | Phenylephrine Versus Norepinephrine for Septic Shock in Critically Ill Patients |
| NCT03273634 | Phase 4 | COMPLETED | The Effect of Proton Pump Inhibition on Palpitations |
| NCT03289429 | Phase 4 | UNKNOWN | Antiarrhythmic and Cardioprotective Effects of Atorvastatin Versus Magnesium Sulfate in Cardiac Valve Replacement Surgery |
| NCT03895411 | Phase 4 | UNKNOWN | Efficacy and Safety of Sotalol in Children With Arrhythmia |
| NCT05486377 | Phase 4 | COMPLETED | Remimazolam vs Desflurane for General Anesthesia for Ablation of Arrhythmia |
| NCT06574555 | Phase 4 | COMPLETED | Norepinephrine ED90 Bolus After Spinal Anesthesia in Cesarean Section |
| NCT07617376 | Phase 4 | RECRUITING | Pre-discharge Influenza Vaccination in Patients Hospitalized for Acute Cardiac Conditions |
| NCT01225614 | Phase 3 | UNKNOWN | Efficacy and Tolerance of Early Launching of Nocturnal Non Invasive |
| NCT03414970 | Phase 3 | ACTIVE_NOT_RECRUITING | Hypofractionated Radiation Therapy After Mastectomy in Preventing Recurrence in Patients With Stage IIa-IIIa Breast Cancer |
| NCT01464086 | Phase 3 | COMPLETED | LIFSCREEN : Evaluation of Whole Body MRI for Early Detection of Cancers in Subjects With P53 Mutation (Li-Fraumeni Syndrome) |
| NCT00168012 | Phase 3 | COMPLETED | Efficacy and Safety of Intravenous Immunoglobulin IVIG-F10 in Patients With Primary Immunodeficiencies (PID) |
| NCT00168025 | Phase 3 | COMPLETED | Efficacy and Safety of Intravenous Immunoglobulin IgPro10 in Patients With Primary Immunodeficiencies (PID) |
| NCT00220766 | Phase 3 | COMPLETED | Rapid Infusion of Immune Globulin Intravenous (Human) In Primary Immunodeficiency Patients |
| NCT00322556 | Phase 3 | COMPLETED | Safety and Efficacy of Intravenous Immunoglobulin IgPro10 in Patients With Primary Immunodeficiencies (PID) |
| NCT00542997 | Phase 3 | COMPLETED | Study of Subcutaneous Immune Globulin in Patients Requiring IgG Replacement Therapy |
| NCT01884311 | Phase 3 | COMPLETED | Pharmacokinetics (PK) and Safety of Subgam-VF in Primary Immunodeficiency Diseases |
| NCT01963143 | Phase 3 | COMPLETED | Bioequivalence Study to Evaluate the Pharmacokinetics, Safety, and Tolerability of Gammaplex® 10 and Gammaplex® 5% in Primary Immunodeficiency Diseases |
| NCT02247141 | Phase 3 | COMPLETED | A Multi-centre Open Study to Assess the Safety and Efficacy of Subgam® |
| NCT00000464 | Phase 3 | COMPLETED | Cardiac Arrest in Seattle: Conventional Versus Amiodarone Drug Evaluation (CASCADE) |
| NCT00000476 | Phase 3 | COMPLETED | Digitalis Investigation Group (DIG) |
| NCT00000480 | Phase 3 | COMPLETED | Multicenter Unsustained Tachycardia Trial (MUSTT) |
| NCT00000492 | Phase 3 | COMPLETED | Beta-Blocker Heart Attack Trial (BHAT) |
| NCT00000502 | Phase 3 | COMPLETED | Evaluation of SC-V Versus Conventional CPR |
| NCT00000517 | Phase 3 | COMPLETED | Boston Area Anticoagulation Trial for Atrial Fibrillation (BAATAF) |
| NCT00000518 | Phase 3 | COMPLETED | Electrophysiologic Study Versus Electrocardiographic Monitoring (ESVEM) |
| NCT00000531 | Phase 3 | COMPLETED | Antiarrhythmics Versus Implantable Defibrillators (AVID) |
| NCT00000540 | Phase 3 | COMPLETED | Coronary Artery Bypass Graft (CABG) Patch Trial |
| NCT00000556 | Phase 3 | COMPLETED | Atrial Fibrillation Follow-up Investigation of Rhythm Management (AFFIRM) |
| NCT00000561 | Phase 3 | COMPLETED | Mode Selection Trial in Sinus Node Dysfunction (MOST) |
| NCT00000609 | Phase 3 | COMPLETED | Sudden Cardiac Death in Heart Failure Trial (SCD-HeFT) |
| NCT00004559 | Phase 3 | COMPLETED | Fatty Acid Antiarrhythmia Trial (FAAT) |
| NCT00004560 | Phase 3 | COMPLETED | Public Access Defibrillation (PAD) Community Trial |
| NCT00035490 | Phase 3 | COMPLETED | Efficacy and Safety Evaluation of Azimilide Dihydrochloride in Patients With Implantable Cardioverter Defibrillators |
| NCT00098137 | Phase 3 | COMPLETED | Trial to Investigate the Efficacy of Olmesartan in Paroxysmal Atrial Fibrillation |
| NCT00110838 | Phase 3 | COMPLETED | SOFA: Study on Omega-3 Fatty Acids and Ventricular Arrhythmia |
| NCT00116428 | Phase 3 | COMPLETED | NAVISTAR® THERMOCOOL® Catheter for the Radiofrequency Ablation of Symptomatic Paroxysmal Atrial Fibrillation |
Predicted chemistry — Sugi Predict
The predicted patent-compound landscape for ACADVL across ~30M SureChEMBL compounds — explore on Sugi Predict.
Related Atlas pages
- Associated diseases: very long chain acyl-CoA dehydrogenase deficiency
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): cardiac rhythm disease, intellectual developmental disorder 62, isolated Pierre-Robin syndrome, pancreatic hypoplasia-diabetes-congenital heart disease syndrome, Pearson syndrome, presbycusis, very long chain acyl-CoA dehydrogenase deficiency