ACAP2-IT1

Summary

ACAP2-IT1 (ACAP2 intronic transcript 1, HGNC:41426) is a long non-coding RNA gene on chromosome 3q29.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:41426
Approved symbol	ACAP2-IT1
Name	ACAP2 intronic transcript 1
Location	3q29
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000229325
Ensembl biotype	lncRNA
Entrez	100874306
RNAcentral	URS000057D897 — lncRNA, 690 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000419899

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000419899 — 2 exons

Exon	Start	End
ENSE00001604622	195280723	195280809
ENSE00001784324	195282139	195282741

Expression profiles

Bgee: expression breadth ubiquitous, 130 present calls, max score 87.36.

Top tissues by expression

130 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	87.36	gold quality
monocyte	CL:0000576	82.85	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	80.03	silver quality
right hemisphere of cerebellum	UBERON:0014890	79.95	gold quality
cerebellar cortex	UBERON:0002129	76.91	gold quality
cerebellar hemisphere	UBERON:0002245	76.84	gold quality
cerebellum	UBERON:0002037	76.58	gold quality
corpus callosum	UBERON:0002336	76.11	gold quality
colonic epithelium	UBERON:0000397	76.05	gold quality
cortical plate	UBERON:0005343	75.01	gold quality
endometrium	UBERON:0001295	74.45	gold quality
superior frontal gyrus	UBERON:0002661	73.61	gold quality
rectum	UBERON:0001052	73.54	gold quality
right frontal lobe	UBERON:0002810	72.25	gold quality
Brodmann (1909) area 9	UBERON:0013540	72.17	gold quality
adrenal tissue	UBERON:0018303	71.22	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	71.12	gold quality
frontal cortex	UBERON:0001870	70.62	gold quality
cerebral cortex	UBERON:0000956	70.52	gold quality
bone marrow	UBERON:0002371	70.42	gold quality
Ammon’s horn	UBERON:0001954	70.22	gold quality
prefrontal cortex	UBERON:0000451	69.77	gold quality
nucleus accumbens	UBERON:0001882	69.69	gold quality
tonsil	UBERON:0002372	69.66	gold quality
brain	UBERON:0000955	69.58	gold quality
bone marrow cell	CL:0002092	69.50	silver quality
lymph node	UBERON:0000029	69.44	gold quality
right ovary	UBERON:0002118	69.33	gold quality
anterior cingulate cortex	UBERON:0009835	69.33	gold quality
vermiform appendix	UBERON:0001154	69.15	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.21

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.