ACSF2
geneOn this page
Also known as FLJ20920ACSMW
Summary
ACSF2 (acyl-CoA synthetase family member 2, HGNC:26101) is a protein-coding gene on chromosome 17q21.33, encoding Medium-chain acyl-CoA ligase ACSF2, mitochondrial (Q96CM8). Acyl-CoA synthases catalyze the initial reaction in fatty acid metabolism, by forming a thioester with CoA.
Enables medium-chain fatty acid-CoA ligase activity. Predicted to be involved in fatty acid metabolic process. Located in mitochondrion.
Source: NCBI Gene 80221 — RefSeq curated summary.
At a glance
- GWAS associations: 1
- Clinical variants (ClinVar): 166 total — 1 pathogenic
- MANE Select transcript:
NM_025149
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:26101 |
| Approved symbol | ACSF2 |
| Name | acyl-CoA synthetase family member 2 |
| Location | 17q21.33 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | FLJ20920, ACSMW |
| Ensembl gene | ENSG00000167107 |
| Ensembl biotype | protein_coding |
| OMIM | 610465 |
| Entrez | 80221 |
Gene structure
Transcript identifiers
Ensembl transcripts: 45 — 25 protein_coding, 10 retained_intron, 6 protein_coding_CDS_not_defined, 4 nonsense_mediated_decay
ENST00000300441, ENST00000427954, ENST00000502667, ENST00000503295, ENST00000503387, ENST00000503408, ENST00000504392, ENST00000504945, ENST00000506052, ENST00000506085, ENST00000506582, ENST00000507769, ENST00000507792, ENST00000508245, ENST00000508734, ENST00000509806, ENST00000510262, ENST00000510410, ENST00000511147, ENST00000511288, ENST00000512119, ENST00000512537, ENST00000513101, ENST00000513544, ENST00000570356, ENST00000893265, ENST00000893266, ENST00000893267, ENST00000893268, ENST00000893269, ENST00000893270, ENST00000893271, ENST00000893272, ENST00000893273, ENST00000893274, ENST00000916543, ENST00000942395, ENST00000942396, ENST00000942397, ENST00000942398, ENST00000942399, ENST00000942400, ENST00000942401, ENST00000942402, ENST00000942403
RefSeq mRNA: 6 — MANE Select: NM_025149
NM_001288968, NM_001288969, NM_001288970, NM_001288971, NM_001288972, NM_025149
CCDS: CCDS11567, CCDS74103, CCDS74104, CCDS74105
Canonical transcript exons
ENST00000300441 — 16 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001109747 | 50461242 | 50461370 |
| ENSE00002069841 | 50474502 | 50474837 |
| ENSE00003485165 | 50473894 | 50474004 |
| ENSE00003493770 | 50462420 | 50462585 |
| ENSE00003528730 | 50463156 | 50463251 |
| ENSE00003534596 | 50460677 | 50460872 |
| ENSE00003542482 | 50462184 | 50462302 |
| ENSE00003554934 | 50461633 | 50461686 |
| ENSE00003569657 | 50472428 | 50472579 |
| ENSE00003609617 | 50464218 | 50464294 |
| ENSE00003609653 | 50471028 | 50471135 |
| ENSE00003615432 | 50473665 | 50473806 |
| ENSE00003630437 | 50474199 | 50474267 |
| ENSE00003647341 | 50463818 | 50463909 |
| ENSE00003678158 | 50426218 | 50426389 |
| ENSE00003693228 | 50463395 | 50463552 |
Expression profiles
Bgee: expression breadth ubiquitous, 244 present calls, max score 99.00.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 16.3133 / max 664.2887, expressed in 1775 samples.
FANTOM5 promoters (3 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 161662 | 10.0262 | 1594 |
| 161661 | 6.2492 | 1703 |
| 161664 | 0.0380 | 4 |
Top tissues by expression
277 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| right lobe of thyroid gland | UBERON:0001119 | 99.00 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 98.94 | gold quality |
| left lobe of thyroid gland | UBERON:0001120 | 98.78 | gold quality |
| right adrenal gland | UBERON:0001233 | 98.75 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 98.50 | gold quality |
| left adrenal gland cortex | UBERON:0035825 | 98.49 | gold quality |
| left adrenal gland | UBERON:0001234 | 98.37 | gold quality |
| thyroid gland | UBERON:0002046 | 98.13 | gold quality |
| adrenal cortex | UBERON:0001235 | 97.79 | gold quality |
| adult mammalian kidney | UBERON:0000082 | 97.61 | gold quality |
| adrenal gland | UBERON:0002369 | 97.44 | gold quality |
| skin of abdomen | UBERON:0001416 | 97.28 | gold quality |
| right lobe of liver | UBERON:0001114 | 96.96 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 96.69 | gold quality |
| skin of leg | UBERON:0001511 | 96.66 | gold quality |
| right hemisphere of cerebellum | UBERON:0014890 | 96.49 | gold quality |
| cerebellar cortex | UBERON:0002129 | 96.46 | gold quality |
| rectum | UBERON:0001052 | 96.06 | gold quality |
| body of pancreas | UBERON:0001150 | 95.90 | gold quality |
| olfactory segment of nasal mucosa | UBERON:0005386 | 95.80 | gold quality |
| transverse colon | UBERON:0001157 | 95.75 | gold quality |
| adrenal tissue | UBERON:0018303 | 95.72 | gold quality |
| right ovary | UBERON:0002118 | 95.59 | gold quality |
| left ovary | UBERON:0002119 | 95.54 | gold quality |
| right atrium auricular region | UBERON:0006631 | 95.52 | gold quality |
| hindlimb stylopod muscle | UBERON:0004252 | 95.13 | gold quality |
| small intestine Peyer’s patch | UBERON:0003454 | 95.05 | gold quality |
| nephron tubule | UBERON:0001231 | 94.96 | gold quality |
| right lung | UBERON:0002167 | 94.90 | gold quality |
| cerebellum | UBERON:0002037 | 94.70 | gold quality |
Single-cell (SCXA)
Detected in 2 experiment(s), a significant marker in 2.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-CURD-119 | yes | 61.36 |
| E-ANND-3 | yes | 5.71 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
10 targeting ACSF2, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-96-5P | 99.95 | 72.80 | 2140 |
| HSA-MIR-4731-5P | 99.89 | 67.23 | 2537 |
| HSA-MIR-4447 | 99.85 | 67.81 | 2900 |
| HSA-MIR-3660 | 99.68 | 67.33 | 1149 |
| HSA-MIR-4526 | 99.68 | 67.07 | 1136 |
| HSA-MIR-4472 | 99.56 | 66.08 | 1478 |
| HSA-MIR-4786-3P | 99.36 | 68.35 | 1390 |
| HSA-MIR-4763-5P | 98.75 | 63.89 | 854 |
| HSA-MIR-4457 | 98.09 | 67.12 | 1274 |
| HSA-MIR-10397-5P | 97.31 | 69.06 | 710 |
Literature-anchored findings (GeneRIF, showing 1)
- ACSF2 and lysine lactylation contribute to renal tubule injury in diabetes. (PMID:38676722)
Cross-species orthologs
4 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | acsf2 | ENSDARG00000061201 |
| mus_musculus | Acsf2 | ENSMUSG00000076435 |
| rattus_norvegicus | Acsf2 | ENSRNOG00000003330 |
| drosophila_melanogaster | Acsf2 | FBGN0031703 |
Paralogs (13): ACSM3 (ENSG00000005187), ACSM2B (ENSG00000066813), AACS (ENSG00000081760), ACSS3 (ENSG00000111058), ACSS2 (ENSG00000131069), ACSS1 (ENSG00000154930), AASDH (ENSG00000157426), ACSM1 (ENSG00000166743), ACSM6 (ENSG00000173124), ACSF3 (ENSG00000176715), ACSM5 (ENSG00000183549), ACSM2A (ENSG00000183747), ACSM4 (ENSG00000215009)
Protein
Protein identifiers
Medium-chain acyl-CoA ligase ACSF2, mitochondrial — Q96CM8 (reviewed: Q96CM8)
All UniProt accessions (7): D6RF15, D6RF87, E7EN53, E9PF16, Q96CM8, H0Y8N1, H0Y8Y5
UniProt curated annotations — full annotation on UniProt →
Function. Acyl-CoA synthases catalyze the initial reaction in fatty acid metabolism, by forming a thioester with CoA. Has some preference toward medium-chain substrates. Plays a role in adipocyte differentiation.
Subcellular location. Mitochondrion.
Induction. By PPARG.
Similarity. Belongs to the ATP-dependent AMP-binding enzyme family.
Isoforms (4)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q96CM8-1 | 1 | yes |
| Q96CM8-2 | 2 | |
| Q96CM8-3 | 3 | |
| Q96CM8-4 | 4 |
RefSeq proteins (6): NP_001275897, NP_001275898, NP_001275899, NP_001275900, NP_001275901, NP_079425* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000873 | AMP-dep_synth/lig_dom | Domain |
| IPR020845 | AMP-binding_CS | Conserved_site |
| IPR025110 | AMP-bd_C | Domain |
| IPR045851 | AMP-b_sf | Homologous_superfamily |
Pfam: PF00501, PF13193
Catalyzed reactions (Rhea), 2 shown:
- octanoate + ATP + CoA = octanoyl-CoA + AMP + diphosphate (RHEA:33631)
- a medium-chain fatty acid + ATP + CoA = a medium-chain fatty acyl-CoA + AMP + diphosphate (RHEA:48340)
UniProt features (23 total): modified residue 12, binding site 4, splice variant 3, sequence variant 2, transit peptide 1, chain 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q96CM8-F1 | 89.40 | 0.79 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Ligand- & substrate-binding residues (4): 263–271; 493; 508; 599
Post-translational modifications (12): 398, 478, 510, 544, 544, 570, 570, 599, 179, 182, 182, 340
Function
Pathways and Gene Ontology
Reactome pathways
4 pathways
| ID | Pathway |
|---|---|
| R-HSA-77289 | Mitochondrial Fatty Acid Beta-Oxidation |
| R-HSA-1430728 | Metabolism |
| R-HSA-556833 | Metabolism of lipids |
| R-HSA-8978868 | Fatty acid metabolism |
MSigDB gene sets: 123 (showing top):
GOBP_ORGANOPHOSPHATE_METABOLIC_PROCESS, GOBP_LONG_CHAIN_FATTY_ACID_METABOLIC_PROCESS, GOBP_MONOCARBOXYLIC_ACID_METABOLIC_PROCESS, SHEPARD_BMYB_MORPHOLINO_DN, GOBP_NUCLEOBASE_CONTAINING_SMALL_MOLECULE_METABOLIC_PROCESS, MCBRYAN_PUBERTAL_BREAST_4_5WK_DN, GOBP_AMIDE_METABOLIC_PROCESS, MCBRYAN_PUBERTAL_BREAST_3_4WK_UP, DELYS_THYROID_CANCER_DN, HNF4_01, MCBRYAN_PUBERTAL_BREAST_5_6WK_UP, GOZGIT_ESR1_TARGETS_UP, GOBP_LIPID_METABOLIC_PROCESS, GOBP_ORGANIC_ACID_METABOLIC_PROCESS, AACTTT_UNKNOWN
GO Biological Process (4): fatty acid metabolic process (GO:0006631), acyl-CoA metabolic process (GO:0006637), long-chain fatty acid metabolic process (GO:0001676), lipid metabolic process (GO:0006629)
GO Molecular Function (7): long-chain fatty acid-CoA ligase activity (GO:0004467), ATP binding (GO:0005524), medium-chain fatty acid-CoA ligase activity (GO:0031956), nucleotide binding (GO:0000166), catalytic activity (GO:0003824), protein binding (GO:0005515), ligase activity (GO:0016874)
GO Cellular Component (2): mitochondrion (GO:0005739), mitochondrial matrix (GO:0005759)
Reactome top-level categories
Rollup of top-3 pathways:
| Category | Pathways |
|---|---|
| Fatty acid metabolism | 1 |
| Metabolism | 1 |
| Metabolism of lipids | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| fatty acid-CoA ligase activity | 2 |
| lipid metabolic process | 1 |
| monocarboxylic acid metabolic process | 1 |
| nucleoside phosphate metabolic process | 1 |
| sulfur compound metabolic process | 1 |
| purine-containing compound metabolic process | 1 |
| fatty acid metabolic process | 1 |
| primary metabolic process | 1 |
| long-chain fatty acid metabolic process | 1 |
| adenyl ribonucleotide binding | 1 |
| purine ribonucleoside triphosphate binding | 1 |
| nucleoside phosphate binding | 1 |
| heterocyclic compound binding | 1 |
| molecular_function | 1 |
| binding | 1 |
| catalytic activity | 1 |
| cytoplasm | 1 |
| intracellular membrane-bounded organelle | 1 |
| mitochondrion | 1 |
| intracellular organelle lumen | 1 |
Protein interactions and networks
STRING
2611 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| ACSF2 | LIPE | Q05469 | 791 |
| ACSF2 | ATP5MC3 | P48201 | 710 |
| ACSF2 | IREB2 | P48200 | 639 |
| ACSF2 | EMC2 | Q15006 | 621 |
| ACSF2 | RPL8 | P25120 | 580 |
| ACSF2 | SLC2A4 | P14672 | 568 |
| ACSF2 | AIFM2 | Q9BRQ8 | 542 |
| ACSF2 | AASDH | Q4L235 | 521 |
| ACSF2 | HADHA | P40939 | 521 |
| ACSF2 | CS | O75390 | 502 |
| ACSF2 | GPX4 | P36969 | 462 |
| ACSF2 | PPARG | P37231 | 459 |
| ACSF2 | ECHS1 | P30084 | 443 |
| ACSF2 | SQLE | Q14534 | 428 |
| ACSF2 | ZBTB8B | Q8NAP8 | 417 |
IntAct
132 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| ARL6IP1 | ACSF2 | psi-mi:“MI:0915”(physical association) | 0.830 |
| CMTM5 | ACSF2 | psi-mi:“MI:0915”(physical association) | 0.740 |
| ACSF2 | CMTM5 | psi-mi:“MI:0915”(physical association) | 0.740 |
| HSPD1 | NUDT19 | psi-mi:“MI:0914”(association) | 0.710 |
| ACSF2 | AGTRAP | psi-mi:“MI:0915”(physical association) | 0.670 |
| AGTRAP | ACSF2 | psi-mi:“MI:0915”(physical association) | 0.670 |
| COQ9 | ACSF2 | psi-mi:“MI:0915”(physical association) | 0.670 |
| ACSF2 | CMTM5 | psi-mi:“MI:0915”(physical association) | 0.560 |
| DGAT2L6 | ACSF2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| CLEC10A | ACSF2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| APOC1 | ACSF2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| MICOS13 | ACSF2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| APOA5 | ACSF2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| GPR152 | ACSF2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| RHBDD2 | ACSF2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| RDH10 | ACSF2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| ACSF2 | SENP2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| ARL13B | ACSF2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| SYNGR3 | ACSF2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| ACSF2 | SIGLEC12 | psi-mi:“MI:0915”(physical association) | 0.560 |
BioGRID (110): ACSF2 (Two-hybrid), ACSF2 (Two-hybrid), CMTM5 (Two-hybrid), ACSF2 (Affinity Capture-MS), ACSF2 (Two-hybrid), ACSF2 (Two-hybrid), ACSF2 (Two-hybrid), ACSF2 (Affinity Capture-MS), ACSF2 (Affinity Capture-MS), ACSF2 (Affinity Capture-MS), ACSF2 (Affinity Capture-MS), ACSF2 (Affinity Capture-MS), ACSF2 (Affinity Capture-MS), ACSF2 (Affinity Capture-MS), ACSF2 (Affinity Capture-MS)
ESM2 similar proteins: A2AV36, A2VD33, A4QP75, A7DZP8, A7MBI3, A8E657, F1QF89, O14531, O35098, O46504, O77784, P32232, P35520, P35571, P37142, P49080, Q17QJ1, Q29RU9, Q3KRD0, Q3TQB2, Q499N5, Q4R510, Q503J2, Q58H57, Q5EA45, Q5R9G9, Q62951, Q63342, Q64FG0, Q64FW2, Q6DCP1, Q6JQN1, Q6NUM9, Q6V1X1, Q7TSQ8, Q80YA7, Q8NCN5, Q8VHE9, Q90635, Q91YP0
Diamond homologs: A0A0C1BUW8, A0A0C1E3B7, A0A0S1RUN4, A0A0S2E7V8, A0A0S2E7W3, A0A0S2E7W7, A0A0S2E7X0, A0A0S2E7Z1, A0A179HJB8, A0A336U965, A0A6F9DYX9, A7XRY0, B2HGV4, B3FWS8, B7STY1, C5D6U5, F8P1W3, I3PB36, I6NXV7, M4IRL4, M4IS88, M4IS92, O31826, P12276, P27743, P39518, P44446, P49327, P9WES4, Q0CBN5, Q0CRX1, Q0CT94, Q0CU19, Q0CWD0, Q0D034, Q0DV32, Q0K844, Q1MWN4, Q5B7T4, Q5FVE4
SIGNOR signaling
0 interactions.
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 101 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| mitochondrial large ribosomal subunit assembly | 5 | 52.2× | 2e-05 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
166 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 1 |
| Likely pathogenic | 0 |
| Uncertain significance | 136 |
| Likely benign | 5 |
| Benign | 3 |
Top pathogenic / likely-pathogenic (1)
| Variant ID | HGVS | Classification |
|---|---|---|
| 2692406 | Single allele | Pathogenic |
SpliceAI
4428 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 17:50460675:A:AG | acceptor_gain | 1.0000 |
| 17:50460676:G:GG | acceptor_gain | 1.0000 |
| 17:50460867:G:GT | donor_gain | 1.0000 |
| 17:50460869:GGAG:G | donor_gain | 1.0000 |
| 17:50460870:G:GT | donor_gain | 1.0000 |
| 17:50461628:A:AG | acceptor_gain | 1.0000 |
| 17:50461629:CCA:C | acceptor_loss | 1.0000 |
| 17:50461630:CAG:C | acceptor_loss | 1.0000 |
| 17:50461632:G:GT | acceptor_loss | 1.0000 |
| 17:50461632:GGT:G | acceptor_gain | 1.0000 |
| 17:50461683:GAAG:G | donor_gain | 1.0000 |
| 17:50461684:A:T | donor_gain | 1.0000 |
| 17:50461684:AAG:A | donor_loss | 1.0000 |
| 17:50461685:AG:A | donor_loss | 1.0000 |
| 17:50461686:GGTAC:G | donor_loss | 1.0000 |
| 17:50461687:G:GA | donor_loss | 1.0000 |
| 17:50461688:T:A | donor_loss | 1.0000 |
| 17:50462179:CACAG:C | acceptor_loss | 1.0000 |
| 17:50462181:CAGG:C | acceptor_loss | 1.0000 |
| 17:50462182:A:AT | acceptor_loss | 1.0000 |
| 17:50462182:AGGT:A | acceptor_gain | 1.0000 |
| 17:50462182:AGGTG:A | acceptor_gain | 1.0000 |
| 17:50462183:G:GC | acceptor_loss | 1.0000 |
| 17:50462183:GGT:G | acceptor_gain | 1.0000 |
| 17:50462183:GGTG:G | acceptor_gain | 1.0000 |
| 17:50462183:GGTGG:G | acceptor_gain | 1.0000 |
| 17:50462299:AGAG:A | donor_loss | 1.0000 |
| 17:50462300:GAG:G | donor_gain | 1.0000 |
| 17:50462301:AGGT:A | donor_loss | 1.0000 |
| 17:50462302:GG:G | donor_loss | 1.0000 |
AlphaMissense
4030 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 17:50471052:A:C | S414R | 0.996 |
| 17:50471054:T:A | S414R | 0.996 |
| 17:50471054:T:G | S414R | 0.996 |
| 17:50461305:T:A | W130R | 0.994 |
| 17:50461305:T:C | W130R | 0.994 |
| 17:50463442:C:G | C312W | 0.991 |
| 17:50463835:G:A | G355D | 0.991 |
| 17:50460862:T:C | L105P | 0.990 |
| 17:50463446:G:C | G314R | 0.990 |
| 17:50472495:G:C | R464P | 0.990 |
| 17:50473733:G:C | R515P | 0.990 |
| 17:50471047:A:T | E412V | 0.989 |
| 17:50472428:G:C | A442P | 0.989 |
| 17:50463834:G:C | G355R | 0.988 |
| 17:50471038:G:A | G409E | 0.988 |
| 17:50461345:C:A | A143D | 0.987 |
| 17:50462577:T:C | F262L | 0.987 |
| 17:50462579:C:A | F262L | 0.987 |
| 17:50462579:C:G | F262L | 0.987 |
| 17:50461326:T:A | W137R | 0.986 |
| 17:50461326:T:C | W137R | 0.986 |
| 17:50463447:G:A | G314D | 0.986 |
| 17:50471038:G:T | G409V | 0.984 |
| 17:50472497:G:T | G465W | 0.984 |
| 17:50463212:C:A | N283K | 0.983 |
| 17:50463212:C:G | N283K | 0.983 |
| 17:50471113:G:A | G434D | 0.983 |
| 17:50461264:T:C | L116P | 0.982 |
| 17:50463512:T:C | F336L | 0.982 |
| 17:50463514:C:A | F336L | 0.982 |
dbSNP variants (sampled 300 via entrez): RS1000126054 (17:50439121 A>C), RS1000216443 (17:50438820 G>A), RS1000336505 (17:50473151 C>A,T), RS1000378435 (17:50426385 C>G,T), RS1000531912 (17:50449079 C>T), RS1000552224 (17:50437101 C>A,T), RS1000609863 (17:50432559 C>T), RS1000702588 (17:50467835 G>A), RS1000715109 (17:50424978 T>G), RS1000716033 (17:50461824 T>C), RS1000757546 (17:50455144 G>A), RS1000776012 (17:50469192 C>T), RS1000857951 (17:50450307 C>G), RS1000880439 (17:50426365 G>A,C), RS1000954982 (17:50471533 T>A,G)
Disease associations
OMIM: gene MIM:610465 | disease phenotypes: MIM:166200
GenCC curated gene-disease
Mondo (1): osteogenesis imperfecta type 1 (MONDO:0008146)
Orphanet (2): Osteogenesis imperfecta type 1 (Orphanet:216796), Osteogenesis imperfecta (Orphanet:666)
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
1 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST006979_503 | Heel bone mineral density | 1.000000e-09 |
EFO canonical traits (1, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0009270 | heel bone mineral density |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
68 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| bisphenol A | affects cotreatment, increases methylation, decreases expression, increases expression, affects expression | 5 |
| Valproic Acid | affects cotreatment, increases expression, affects expression, decreases methylation | 5 |
| sodium arsenite | decreases expression, affects cotreatment, increases abundance | 3 |
| Benzo(a)pyrene | affects methylation, decreases expression, decreases methylation, increases methylation | 3 |
| Acetaminophen | decreases expression, increases expression | 2 |
| Arsenic | affects cotreatment, decreases expression, increases abundance | 2 |
| Dexamethasone | increases expression, affects cotreatment | 2 |
| Nickel | decreases expression | 2 |
| Silicon Dioxide | decreases expression | 2 |
| Cyclosporine | decreases expression | 2 |
| Particulate Matter | decreases expression, increases abundance, affects cotreatment, increases expression | 2 |
| aristolochic acid I | increases expression | 1 |
| afuresertib | increases expression | 1 |
| bisphenol F | increases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| deoxynivalenol | decreases expression | 1 |
| glycidyl methacrylate | decreases expression | 1 |
| lead acetate | decreases expression | 1 |
| 2-methyl-4-isothiazolin-3-one | decreases expression | 1 |
| trichostatin A | increases expression | 1 |
| tris(2-butoxyethyl) phosphate | affects expression | 1 |
| mono-(2-ethylhexyl)phthalate | increases expression | 1 |
| sulforaphane | decreases expression | 1 |
| tris(1,3-dichloro-2-propyl)phosphate | decreases expression | 1 |
| perfluorooctanoic acid | increases expression | 1 |
| manganese chloride | affects cotreatment, decreases expression, increases abundance | 1 |
| cupric chloride | decreases expression | 1 |
| S-(1,2-dichlorovinyl)cysteine | affects response to substance, increases expression | 1 |
| isobutyl alcohol | increases abundance, increases expression, affects cotreatment | 1 |
| perfluorooctane sulfonic acid | decreases expression | 1 |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): osteogenesis imperfecta type 1