ACSL4
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Also known as ACS4LACS4
Summary
ACSL4 (acyl-CoA synthetase long chain family member 4, HGNC:3571) is a protein-coding gene on chromosome Xq23, encoding Long-chain-fatty-acid–CoA ligase 4 (O60488). Catalyzes the conversion of long-chain fatty acids to their active form acyl-CoA for both synthesis of cellular lipids, and degradation via beta-oxidation.
The protein encoded by this gene is an isozyme of the long-chain fatty-acid-coenzyme A ligase family. Although differing in substrate specificity, subcellular localization, and tissue distribution, all isozymes of this family convert free long-chain fatty acids into fatty acyl-CoA esters, and thereby play a key role in lipid biosynthesis and fatty acid degradation. This isozyme preferentially utilizes arachidonate as substrate. The absence of this enzyme may contribute to the cognitive disability or Alport syndrome. Alternative splicing of this gene generates multiple transcript variants.
Source: NCBI Gene 2182 — RefSeq curated summary.
At a glance
- Gene–disease (curated): non-syndromic X-linked intellectual disability (Definitive, ClinGen) — +1 more curated relationship
- GWAS associations: 1
- Clinical variants (ClinVar): 367 total — 24 pathogenic, 10 likely-pathogenic
- Phenotypes (HPO): 30
- Druggable target: yes
- Dosage sensitivity (ClinGen): haploinsufficiency little evidence, triplosensitivity no evidence
- MANE Select transcript:
NM_001318510
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:3571 |
| Approved symbol | ACSL4 |
| Name | acyl-CoA synthetase long chain family member 4 |
| Location | Xq23 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | ACS4, LACS4 |
| Ensembl gene | ENSG00000068366 |
| Ensembl biotype | protein_coding |
| OMIM | 300157 |
| Entrez | 2182 |
Gene structure
Transcript identifiers
Ensembl transcripts: 31 — 24 protein_coding, 3 protein_coding_CDS_not_defined, 3 retained_intron, 1 nonsense_mediated_decay
ENST00000340800, ENST00000348502, ENST00000439581, ENST00000469796, ENST00000502391, ENST00000504383, ENST00000505075, ENST00000505855, ENST00000508092, ENST00000514500, ENST00000671846, ENST00000672282, ENST00000672401, ENST00000673016, ENST00000682031, ENST00000683559, ENST00000684030, ENST00000684414, ENST00000851255, ENST00000851256, ENST00000851257, ENST00000851258, ENST00000915898, ENST00000915899, ENST00000915900, ENST00000953314, ENST00000953315, ENST00000953316, ENST00000953317, ENST00000953318, ENST00000953319
RefSeq mRNA: 4 — MANE Select: NM_001318510
NM_001318509, NM_001318510, NM_004458, NM_022977
CCDS: CCDS14548, CCDS14549
Canonical transcript exons
ENST00000672401 — 16 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000674526 | 109669034 | 109669173 |
| ENSE00000674527 | 109668101 | 109668273 |
| ENSE00000674528 | 109665420 | 109665494 |
| ENSE00000674532 | 109659354 | 109659511 |
| ENSE00000895425 | 109677988 | 109678111 |
| ENSE00000895428 | 109678265 | 109678415 |
| ENSE00000895431 | 109680998 | 109681136 |
| ENSE00000895440 | 109681266 | 109681375 |
| ENSE00000895444 | 109682719 | 109682896 |
| ENSE00000979252 | 109674402 | 109674473 |
| ENSE00000979255 | 109663211 | 109663402 |
| ENSE00001159638 | 109696144 | 109696196 |
| ENSE00001699022 | 109661531 | 109661645 |
| ENSE00002053298 | 109683136 | 109683375 |
| ENSE00003892017 | 109641335 | 109644186 |
| ENSE00003893060 | 109733139 | 109733257 |
Expression profiles
Bgee: expression breadth ubiquitous, 268 present calls, max score 97.41.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 77.1970 / max 6809.8709, expressed in 1746 samples.
FANTOM5 promoters (8 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 200131 | 53.8063 | 1727 |
| 200130 | 11.4606 | 1626 |
| 200132 | 10.9589 | 1646 |
| 200135 | 0.2600 | 23 |
| 200134 | 0.2580 | 101 |
| 200133 | 0.2306 | 95 |
| 200136 | 0.1386 | 18 |
| 200137 | 0.0840 | 10 |
Top tissues by expression
289 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| adrenal tissue | UBERON:0018303 | 97.41 | gold quality |
| monocyte | CL:0000576 | 94.73 | gold quality |
| mononuclear cell | CL:0000842 | 94.25 | gold quality |
| colonic epithelium | UBERON:0000397 | 94.08 | gold quality |
| leukocyte | CL:0000738 | 93.91 | gold quality |
| cortical plate | UBERON:0005343 | 93.60 | gold quality |
| calcaneal tendon | UBERON:0003701 | 93.00 | gold quality |
| right adrenal gland | UBERON:0001233 | 92.98 | gold quality |
| adrenal gland | UBERON:0002369 | 92.63 | gold quality |
| left adrenal gland | UBERON:0001234 | 92.60 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 92.40 | gold quality |
| islet of Langerhans | UBERON:0000006 | 92.37 | gold quality |
| gall bladder | UBERON:0002110 | 92.18 | gold quality |
| left adrenal gland cortex | UBERON:0035825 | 92.14 | gold quality |
| adrenal cortex | UBERON:0001235 | 91.76 | gold quality |
| right lung | UBERON:0002167 | 91.21 | gold quality |
| omental fat pad | UBERON:0010414 | 90.91 | gold quality |
| peritoneum | UBERON:0002358 | 90.86 | gold quality |
| upper lobe of left lung | UBERON:0008952 | 90.86 | gold quality |
| upper lobe of lung | UBERON:0008948 | 90.79 | gold quality |
| stromal cell of endometrium | CL:0002255 | 90.42 | gold quality |
| lower lobe of lung | UBERON:0008949 | 90.31 | gold quality |
| adipose tissue of abdominal region | UBERON:0007808 | 89.94 | gold quality |
| vermiform appendix | UBERON:0001154 | 89.08 | gold quality |
| pericardium | UBERON:0002407 | 88.95 | gold quality |
| prefrontal cortex | UBERON:0000451 | 88.76 | gold quality |
| gastrocnemius | UBERON:0001388 | 88.54 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 88.32 | gold quality |
| left coronary artery | UBERON:0001626 | 88.26 | gold quality |
| metanephros cortex | UBERON:0010533 | 88.15 | gold quality |
Single-cell (SCXA)
Detected in 14 experiment(s), a significant marker in 13.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-CURD-98 | yes | 743.86 |
| E-CURD-119 | yes | 48.57 |
| E-CURD-88 | yes | 25.52 |
| E-ANND-3 | yes | 18.90 |
| E-GEOD-130148 | yes | 14.10 |
| E-CURD-112 | yes | 13.85 |
| E-MTAB-9067 | yes | 13.28 |
| E-CURD-122 | yes | 11.32 |
| E-MTAB-9801 | yes | 7.58 |
| E-HCAD-10 | yes | 6.81 |
| E-GEOD-135922 | yes | 6.50 |
| E-CURD-46 | yes | 5.75 |
| E-MTAB-5061 | yes | 4.04 |
| E-MTAB-6142 | no | 138.84 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): CREB1, MYC, SP1, TCF3
miRNA regulators (miRDB)
261 targeting ACSL4, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-5011-5P | 100.00 | 83.46 | 5820 |
| HSA-MIR-190A-3P | 100.00 | 80.35 | 5520 |
| HSA-MIR-4262 | 100.00 | 73.26 | 3931 |
| HSA-MIR-518D-5P | 100.00 | 67.51 | 979 |
| HSA-MIR-518E-5P | 100.00 | 67.66 | 954 |
| HSA-MIR-518F-5P | 100.00 | 67.51 | 979 |
| HSA-MIR-519A-5P | 100.00 | 67.66 | 954 |
| HSA-MIR-519B-5P | 100.00 | 67.66 | 954 |
| HSA-MIR-519C-5P | 100.00 | 67.66 | 954 |
| HSA-MIR-520C-5P | 100.00 | 67.51 | 979 |
| HSA-MIR-522-5P | 100.00 | 67.66 | 954 |
| HSA-MIR-523-5P | 100.00 | 67.66 | 954 |
| HSA-MIR-526A-5P | 100.00 | 67.51 | 979 |
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-6876-5P | 100.00 | 67.68 | 2126 |
| HSA-MIR-8485 | 100.00 | 77.57 | 4731 |
| HSA-MIR-656-3P | 100.00 | 72.15 | 2788 |
| HSA-MIR-6833-3P | 100.00 | 70.63 | 3197 |
| HSA-MIR-4768-5P | 100.00 | 69.49 | 2861 |
| HSA-MIR-4476 | 100.00 | 68.18 | 2030 |
| HSA-MIR-6077 | 99.99 | 68.04 | 2299 |
| HSA-MIR-186-5P | 99.99 | 70.83 | 3707 |
| HSA-MIR-3662 | 99.99 | 73.82 | 5684 |
| HSA-MIR-520G-5P | 99.99 | 66.76 | 658 |
| HSA-MIR-150-5P | 99.99 | 66.69 | 1976 |
| HSA-MIR-34A-5P | 99.99 | 71.21 | 1784 |
| HSA-MIR-548C-3P | 99.99 | 74.01 | 7587 |
| HSA-MIR-181A-5P | 99.99 | 72.96 | 2995 |
| HSA-MIR-181B-5P | 99.99 | 72.97 | 2996 |
| HSA-MIR-181C-5P | 99.99 | 72.95 | 2996 |
Functional genomics
ClinGen dosage: haploinsufficiency 1 (little evidence), triplosensitivity 0 (no evidence). ClinGen Gene Dosage Map
Literature-anchored findings (GeneRIF, showing 40)
- Fatty acid CoA ligase 4 is up-regulated in colon adenocarcinoma. (PMID:11731423)
- FACL4, encoding fatty acid-CoA ligase 4, is mutated in nonspecific X-linked mental retardation (PMID:11889465)
- FACL4 is highly expressed in hippocampal and cerebellar neurons and may have a role in X linked mental retardation. (PMID:12525535)
- Overexpression of Fatty acid-CoA ligase 4 is associated with human hepatocellular carcinoma (PMID:12824887)
- FACL4 is involved in the hepatocellular carcinoma tumorigenesis and both cAMP and p38 MAPK pathways are associated with the regulation of FACL4 (PMID:15849811)
- Disruption of DMD and the absence of ACSL4 in a patient are responsible for neuromuscular disease and cognitive impairment. (PMID:16276108)
- FACL4 affects HCC cell growth and suggest that modulation of FACL4 expression/activity is an approach for treatment of HCC. (PMID:17934335)
- FACL4 might play a role in the growth of hepatic cancer cells. (PMID:18059177)
- No association between polymorphisms in the FACL4 (fatty acid-CoA ligase 4) gene and nonspecific mental retardation in Qin-Ba mountain region of China. (PMID:18614287)
- The common SNP (C to T substitution) in the first intron of the FACL4 gene is associated with altered Fatty Acid composition of plasma phosphatidylcholines in patients with metabolic syndrome . (PMID:19346733)
- ACSL4 can substitute the functions of dAcsl(l(2)44DEa in organismal viability, lipid storage and the neural wiring in visual center. (PMID:19617635)
- This study found no significant relationship between FACL4 and cognitive function. (PMID:20452052)
- Data suggest that the development of combinatory therapies that profit from the ACSL4, lipooxygenase and COX-2 synergistic action may allow for lower medication doses and avoidance of side effects. (PMID:21085606)
- CSL4 modulates PGE release from human erial smooth muscle cells. (PMID:21242590)
- A total of six novel and 11 known single nucleotide polymorphisms were identified. Further studies are warranted to analyze the candidate genes at Xq11.1-q21.33. (PMID:21384559)
- the involvement of SHP2 activity in the regulation of the expression of the fatty acid-metabolizing enzyme ACSL4 (PMID:21903867)
- The functional interaction between Acyl-CoA synthetase 4, 5-lipooxygenase and cyclooxygenase-2 controls tumor growth. (PMID:22808264)
- ACSL4 can serve as both a biomarker for, and mediator of, an aggressive breast cancer phenotype. (PMID:24155918)
- conclude that in our model system exogenous fatty acids are channeled preferentially towards phosphatidylinositol by ACSL4 overexpression (PMID:24201376)
- MiR-205 down-regulates ACSL4 through targeting its 3’UTR in hepatoma cells. (PMID:24576478)
- studies have identified a novel substrate-induced posttranslational regulatory mechanism by which AA downregulates ACSL4 protein expression in hepatic cells. (PMID:24879802)
- Upregulation of ACSL4 is responsible for the increase in triacylglycerol species containing long polyunsaturated fatty acids during activation of hepatic stellate cells. (PMID:25500141)
- Report PPARdelta-mediated regulatory mechanism for ACSL4 expression in liver tissue and cultured hepatic cells. (PMID:25645621)
- In vitro analysis showed that a recombinant COX-2 enzyme more effectively metabolized 5(S)-HETE to 5-11-diHETE compared to COX-1 enzyme. (PMID:26282205)
- we demonstrate that ACSL4 can be considered a novel activator of the mTOR pathway (PMID:26536660)
- Suggest role for ACSL4 expression in development of castration-resistant prostate cancer. (PMID:26636648)
- ACSL4 plays a tumor-suppressive role in gastric cancer. (PMID:26949059)
- ACSL4 is not only a sensitive monitor of ferroptosis, but also an important contributor of ferroptosis. (PMID:27565726)
- Data show that ELOVL7, SOCS3, ACSL4 and CLU were upregulated while PRKAR1A and ABCG1 were downregulated in the phlegm-dampness group. (PMID:27928700)
- ACLS4 and ACLS3 have roles in insulin secretion (PMID:28193492)
- Silencing of ACSL4 eliminated the 17beta-estradiol-induced increase in AA and EPA uptake. (PMID:28334272)
- These results suggest that ACSL1, ACSL4 and ACSL5 expression is regulated by ER signaling pathways and ACSL5 is a potential novel biomarker for predicting prognosis of breast cancer patients. (PMID:28498416)
- Study demonstrated that ACSL4 was overexpressed in HCC. (PMID:28887439)
- ACSL3 distribution closely overlapped with proteins involved in trafficking from the trans-Golgi network and endosomes. In contrast, the ACSL4 localisation pattern more closely followed that of calnexin which is an endoplasmic reticulum resident chaperone. (PMID:29450800)
- The regulatory network among peroxisomal ABCD2:ACSL4:VLCFA serves as a novel regulator of cartilage homeostasis, and these data may provide novel insights into the role of peroxisomal fatty acid metabolism in pathogenesis of human osteoarthritis (OA). (PMID:30264402)
- ACSL4 role in the drug resistance in breast cancer cell lines. (PMID:30414939)
- the A20-ACSL4 axis plays important roles in erastin-induced endothelial ferroptosis. (PMID:31160087)
- Regulatory mechanisms leading to differential Acyl-CoA synthetase 4 expression in breast cancer cells. (PMID:31311992)
- LncRNA NEAT1 promotes docetaxel resistance in prostate cancer by regulating ACSL4 via sponging miR-34a-5p and miR-204-5p. (PMID:31672604)
- Study shows that the expression of ACSL4 is downregulated in human glioma tissues and cells and demonstrates that ACSL4 protects glioma cells and exerts antiproliferative effects by activating a ferroptosis pathway. These results also highlight the pivotal role of ferroptosis regulation by ACSL4 in its protective effects on glioma. (PMID:31789401)
Cross-species orthologs
28 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | acsl4a | ENSDARG00000004078 |
| danio_rerio | acsl4b | ENSDARG00000010752 |
| mus_musculus | Acsl4 | ENSMUSG00000031278 |
| rattus_norvegicus | Acsl4 | ENSRNOG00000019180 |
| drosophila_melanogaster | bgm | FBGN0027348 |
| drosophila_melanogaster | pdgy | FBGN0027601 |
| drosophila_melanogaster | CG8834 | FBGN0033733 |
| drosophila_melanogaster | CG17999 | FBGN0034552 |
| drosophila_melanogaster | CG9993 | FBGN0034553 |
| drosophila_melanogaster | Fatp3 | FBGN0034999 |
| drosophila_melanogaster | CG4563 | FBGN0035006 |
| drosophila_melanogaster | CG5568 | FBGN0035641 |
| drosophila_melanogaster | CG18586 | FBGN0035642 |
| drosophila_melanogaster | CG4830 | FBGN0037996 |
| drosophila_melanogaster | Acsx1L | FBGN0038730 |
| drosophila_melanogaster | Acsx1R | FBGN0038731 |
| drosophila_melanogaster | Acsx2 | FBGN0038732 |
| drosophila_melanogaster | Acsx3 | FBGN0038733 |
| drosophila_melanogaster | Acsx4 | FBGN0038734 |
| drosophila_melanogaster | Fatp2 | FBGN0265187 |
| drosophila_melanogaster | Fatp1 | FBGN0267828 |
| drosophila_melanogaster | hll | FBGN0286723 |
| caenorhabditis_elegans | WBGENE00007082 | |
| caenorhabditis_elegans | WBGENE00008669 | |
| caenorhabditis_elegans | WBGENE00009218 | |
| caenorhabditis_elegans | WBGENE00011173 | |
| caenorhabditis_elegans | WBGENE00019920 | |
| caenorhabditis_elegans | WBGENE00022849 |
Paralogs (12): SLC27A5 (ENSG00000083807), ACSBG1 (ENSG00000103740), SLC27A6 (ENSG00000113396), ACSL3 (ENSG00000123983), SLC27A1 (ENSG00000130304), ACSBG2 (ENSG00000130377), SLC27A2 (ENSG00000140284), SLC27A3 (ENSG00000143554), ACSL1 (ENSG00000151726), ACSL6 (ENSG00000164398), SLC27A4 (ENSG00000167114), ACSL5 (ENSG00000197142)
Protein
Protein identifiers
Long-chain-fatty-acid–CoA ligase 4 — O60488 (reviewed: O60488)
Alternative names: Arachidonate–CoA ligase, Long-chain acyl-CoA synthetase 4
All UniProt accessions (5): O60488, A0A804HI36, D6RDA8, D6RF95, H0Y9A0
UniProt curated annotations — full annotation on UniProt →
Function. Catalyzes the conversion of long-chain fatty acids to their active form acyl-CoA for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially activates arachidonate and eicosapentaenoate as substrates. Preferentially activates 8,9-EET > 14,15-EET > 5,6-EET > 11,12-EET. Modulates glucose-stimulated insulin secretion by regulating the levels of unesterified EETs. Modulates prostaglandin E2 secretion. Acts as an activator of ferroptosis by activating polyunsaturated fatty acids, especially arachidonate and adrenate, to their active form, generating the primary lipid-peroxidation substrates that contribute to ferroptosis.
Subcellular location. Mitochondrion outer membrane. Endoplasmic reticulum membrane. Cell membrane.
Post-translational modifications. Phosphorylation at Thr-328 by isoform Beta-II of PRKCB promotes activation and lipid peroxidation, thereby inducing ferroptosis. Phosphorylation at Thr-679 by PCK2 promotes ferroptosis.
Disease relevance. Intellectual developmental disorder, X-linked 63 (XLID63) [MIM:300387] A disorder characterized by significantly below average general intellectual functioning associated with impairments in adaptive behavior and manifested during the developmental period. Intellectual deficiency is the only primary symptom of non-syndromic X-linked intellectual disability, while syndromic forms presents with associated physical, neurological and/or psychiatric manifestations. The disease is caused by variants affecting the gene represented in this entry. AMME complex (ATS-MR) [MIM:300194] An X-linked contiguous gene deletion syndrome characterized by glomerulonephritis, sensorineural hearing loss, intellectual disability, midface hypoplasia and elliptocytosis. The gene represented in this entry may be involved in disease pathogenesis.
Activity regulation. Both triacsin C and rosiglitazone inhibit arachidonoyl-CoA ligase activity. Specifically inhibited by thiazolidinediones, preventing ferroptosis.
Similarity. Belongs to the ATP-dependent AMP-binding enzyme family.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| O60488-1 | Long, V2 | yes |
| O60488-2 | Short, V1 |
RefSeq proteins (4): NP_001305438, NP_001305439, NP_004449, NP_075266 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000873 | AMP-dep_synth/lig_dom | Domain |
| IPR020845 | AMP-binding_CS | Conserved_site |
| IPR042099 | ANL_N_sf | Homologous_superfamily |
| IPR045851 | AMP-b_sf | Homologous_superfamily |
Pfam: PF00501
Enzyme classification (BRENDA):
- EC 6.2.1.15 — arachidonate-CoA ligase (BRENDA: 5 organisms, 10 substrates, 16 inhibitors, 20 Km, 0 kcat entries)
- EC 6.2.1.3 — long-chain-fatty-acid-CoA ligase (BRENDA: 48 organisms, 205 substrates, 100 inhibitors, 159 Km, 11 kcat entries)
Substrate kinetics (BRENDA)
52 substrates with measured Km, best-characterized 15. Km ranges are aggregated across organisms/conditions.
| Substrate | Km (mM) | Measurements |
|---|---|---|
| ATP | 0.025–12.21 | 28 |
| COA | 0.0005–4.7 | 21 |
| PALMITATE | 0.0002–6 | 19 |
| OLEATE | 0.0014–3 | 9 |
| ARACHIDONATE | 0.0058–0.0793 | 7 |
| ATP | 0.029–2.39 | 6 |
| COA | 0.005–0.15 | 6 |
| ARACHIDONATE | 0.0065–9.7 | 6 |
| STEARATE | 0.0002–0.12 | 6 |
| DECANOATE | 0.004–0.0083 | 4 |
| LAURATE | 0.0005–0.002 | 4 |
| LINOLEATE | 0.0022–0.041 | 4 |
| MYRISTATE | 0.0002–0.0024 | 4 |
| OCTANOATE | 0.0007–0.0408 | 4 |
| LAURIC ACID | 0.0017–0.0163 | 3 |
Catalyzed reactions (Rhea), 12 shown:
- a long-chain fatty acid + ATP + CoA = a long-chain fatty acyl-CoA + AMP + diphosphate (RHEA:15421)
- (5Z,8Z,11Z,14Z)-eicosatetraenoate + ATP + CoA = (5Z,8Z,11Z,14Z)-eicosatetraenoyl-CoA + AMP + diphosphate (RHEA:19713)
- hexadecanoate + ATP + CoA = hexadecanoyl-CoA + AMP + diphosphate (RHEA:30751)
- (E)-hexadec-2-enoate + ATP + CoA = (2E)-hexadecenoyl-CoA + AMP + diphosphate (RHEA:36139)
- (4Z,7Z,10Z,13Z,16Z,19Z)-docosahexaenoate + ATP + CoA = (4Z,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA + AMP + diphosphate (RHEA:44932)
- 8,9-epoxy-(5Z,11Z,14Z)-eicosatrienoate + ATP + CoA = 8,9-epoxy-(5Z,11Z,14Z)-eicosatrienoyl-CoA + AMP + diphosphate (RHEA:52008)
- 11,12-epoxy-(5Z,8Z,14Z)-eicosatrienoate + ATP + CoA = 11,12-epoxy-(5Z,8Z,14Z)-eicosatrienoyl-CoA + AMP + diphosphate (RHEA:52012)
- 14,15-epoxy-(5Z,8Z,11Z)-eicosatrienoate + ATP + CoA = 14,15-epoxy-(5Z,8Z,11Z)-eicosatrienoyl-CoA + AMP + diphosphate (RHEA:52016)
- 5,6-epoxy-(8Z,11Z,14Z)-eicosatrienoate + ATP + CoA = 5,6-epoxy-(8Z,11Z,14Z)-eicosatrienoyl-CoA + AMP + diphosphate (RHEA:52088)
- 5-hydroxy-(6E,8Z,11Z,14Z)-eicosatetraenoate + ATP + CoA = 5-hydroxy-(6E,8Z,11Z,14Z)-eicosatetraenoyl-CoA + AMP + diphosphate (RHEA:52108)
- 12-hydroxy-(5Z,8Z,10E,14Z)-eicosatetraenoate + ATP + CoA = 12-hydroxy-(5Z,8Z,10E,14Z)-eicosatetraenoyl-CoA + AMP + diphosphate (RHEA:52112)
- 15-hydroxy-(5Z,8Z,11Z,13E)-eicosatetraenoate + ATP + CoA = 15-hydroxy-(5Z,8Z,11Z,13E)-eicosatetraenoyl-CoA + AMP + diphosphate (RHEA:52116)
UniProt features (13 total): modified residue 3, sequence variant 3, mutagenesis site 2, chain 1, transmembrane region 1, sequence conflict 1, topological domain 1, splice variant 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-O60488-F1 | 90.46 | 0.66 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (3): 328, 447, 679
Mutagenesis-validated functional residues (2):
| Position | Phenotype |
|---|---|
| 328 | abolished phosphorylation by isoform beta-ii of prkcb, preventing ferroptosis. |
| 679 | abolished phosphorylation by pck2, preventing ferroptosis. |
Function
Pathways and Gene Ontology
Reactome pathways
9 pathways
| ID | Pathway |
|---|---|
| R-HSA-434313 | Intracellular metabolism of fatty acids regulates insulin secretion |
| R-HSA-75876 | Synthesis of very long-chain fatty acyl-CoAs |
| R-HSA-1430728 | Metabolism |
| R-HSA-163685 | Integration of energy metabolism |
| R-HSA-400451 | Free fatty acids regulate insulin secretion |
| R-HSA-422356 | Regulation of insulin secretion |
| R-HSA-556833 | Metabolism of lipids |
| R-HSA-75105 | Fatty acyl-CoA biosynthesis |
| R-HSA-8978868 | Fatty acid metabolism |
MSigDB gene sets: 527 (showing top):
AHRARNT_01, GGGACCA_MIR133A_MIR133B, RNGTGGGC_UNKNOWN, VERHAAK_AML_WITH_NPM1_MUTATED_DN, REACTOME_SYNTHESIS_OF_VERY_LONG_CHAIN_FATTY_ACYL_COAS, GOBP_EMBRYO_DEVELOPMENT_ENDING_IN_BIRTH_OR_EGG_HATCHING, GOBP_REGULATION_OF_ICOSANOID_SECRETION, KEGG_ADIPOCYTOKINE_SIGNALING_PATHWAY, GOBP_REGULATION_OF_PROSTAGLANDIN_SECRETION, GOBP_REGULATION_OF_ORGANIC_ACID_TRANSPORT, TGCTGCT_MIR15A_MIR16_MIR15B_MIR195_MIR424_MIR497, RORA1_01, TGCACTT_MIR519C_MIR519B_MIR519A, GOBP_INSULIN_SECRETION, GRAESSMANN_APOPTOSIS_BY_DOXORUBICIN_DN
GO Biological Process (16): long-chain fatty acid metabolic process (GO:0001676), lipid metabolic process (GO:0006629), fatty acid metabolic process (GO:0006631), unsaturated fatty acid biosynthetic process (GO:0006636), lipid biosynthetic process (GO:0008610), neuron differentiation (GO:0030182), positive regulation of cell growth (GO:0030307), positive regulation of insulin secretion (GO:0032024), negative regulation of prostaglandin secretion (GO:0032307), long-chain fatty-acyl-CoA metabolic process (GO:0035336), long-chain fatty-acyl-CoA biosynthetic process (GO:0035338), alpha-linolenic acid metabolic process (GO:0036109), long-chain fatty acid biosynthetic process (GO:0042759), embryonic process involved in female pregnancy (GO:0060136), positive regulation of ferroptosis (GO:0160020), fatty acid derivative biosynthetic process (GO:1901570)
GO Molecular Function (7): long-chain fatty acid-CoA ligase activity (GO:0004467), ATP binding (GO:0005524), very long-chain fatty acid-CoA ligase activity (GO:0031957), arachidonate-CoA ligase activity (GO:0047676), palmitoyl-CoA ligase activity (GO:0090433), nucleotide binding (GO:0000166), ligase activity (GO:0016874)
GO Cellular Component (12): cytoplasm (GO:0005737), mitochondrion (GO:0005739), mitochondrial outer membrane (GO:0005741), peroxisomal membrane (GO:0005778), endoplasmic reticulum (GO:0005783), endoplasmic reticulum membrane (GO:0005789), lipid droplet (GO:0005811), plasma membrane (GO:0005886), membrane (GO:0016020), mitochondria-associated endoplasmic reticulum membrane contact site (GO:0044233), extracellular exosome (GO:0070062), peroxisome (GO:0005777)
Reactome top-level categories
Rollup of top-7 pathways:
| Category | Pathways |
|---|---|
| Metabolism | 2 |
| Free fatty acids regulate insulin secretion | 1 |
| Fatty acyl-CoA biosynthesis | 1 |
| Regulation of insulin secretion | 1 |
| Integration of energy metabolism | 1 |
| Fatty acid metabolism | 1 |
| Metabolism of lipids | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| long-chain fatty acid metabolic process | 3 |
| lipid metabolic process | 2 |
| fatty acid biosynthetic process | 2 |
| unsaturated fatty acid metabolic process | 2 |
| fatty acid-CoA ligase activity | 2 |
| long-chain fatty acid-CoA ligase activity | 2 |
| cellular anatomical structure | 2 |
| cytoplasm | 2 |
| intracellular membrane-bounded organelle | 2 |
| fatty acid metabolic process | 1 |
| primary metabolic process | 1 |
| monocarboxylic acid metabolic process | 1 |
| biosynthetic process | 1 |
| cell differentiation | 1 |
| generation of neurons | 1 |
| regulation of cell growth | 1 |
| cell growth | 1 |
| positive regulation of growth | 1 |
| positive regulation of cellular process | 1 |
| insulin secretion | 1 |
| positive regulation of protein secretion | 1 |
| regulation of insulin secretion | 1 |
| positive regulation of peptide hormone secretion | 1 |
| negative regulation of icosanoid secretion | 1 |
| regulation of prostaglandin secretion | 1 |
| prostaglandin secretion | 1 |
| negative regulation of secretion by cell | 1 |
| fatty-acyl-CoA metabolic process | 1 |
| long-chain fatty-acyl-CoA metabolic process | 1 |
| fatty-acyl-CoA biosynthetic process | 1 |
| olefinic compound metabolic process | 1 |
| female pregnancy | 1 |
| embryo development | 1 |
| embryo development ending in birth or egg hatching | 1 |
| multicellular organismal reproductive process | 1 |
| positive regulation of programmed cell death | 1 |
| ferroptosis | 1 |
| regulation of ferroptosis | 1 |
| lipid biosynthetic process | 1 |
| fatty acid derivative metabolic process | 1 |
Protein interactions and networks
STRING
2624 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| ACSL4 | AMMECR1 | Q9Y4X0 | 929 |
| ACSL4 | CPT1A | P50416 | 873 |
| ACSL4 | GPX4 | P36969 | 834 |
| ACSL4 | SLC27A2 | O14975 | 828 |
| ACSL4 | LPCAT3 | Q6P1A2 | 823 |
| ACSL4 | DGAT1 | O75907 | 819 |
| ACSL4 | COL4A5 | P29400 | 806 |
| ACSL4 | AASDH | Q4L235 | 785 |
| ACSL4 | KCNE5 | Q9UJ90 | 782 |
| ACSL4 | ASCL4 | Q6XD76 | 722 |
| ACSL4 | COASY | Q13057 | 715 |
| ACSL4 | AIFM2 | Q9BRQ8 | 700 |
| ACSL4 | FASN | P49327 | 694 |
| ACSL4 | SLC7A11 | Q9UPY5 | 676 |
| ACSL4 | ABCD1 | P33897 | 675 |
IntAct
144 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| CFTR | ESYT2 | psi-mi:“MI:0914”(association) | 0.710 |
| TOR1AIP2 | TMEM223 | psi-mi:“MI:0914”(association) | 0.530 |
| MME | TMEM223 | psi-mi:“MI:0914”(association) | 0.530 |
| SLC31A1 | C2orf72 | psi-mi:“MI:0914”(association) | 0.530 |
| SLC15A1 | METTL15 | psi-mi:“MI:0914”(association) | 0.530 |
| TNFSF8 | LGALS8 | psi-mi:“MI:0914”(association) | 0.530 |
| CCT8L2 | ACSL4 | psi-mi:“MI:0914”(association) | 0.530 |
| LPAR1 | TMEM223 | psi-mi:“MI:0914”(association) | 0.530 |
| FLVCR1 | TNFRSF10B | psi-mi:“MI:0914”(association) | 0.530 |
| SLC6A8 | ILVBL | psi-mi:“MI:0914”(association) | 0.530 |
| NRAS | ESYT2 | psi-mi:“MI:2364”(proximity) | 0.480 |
| ACSL4 | H2BC9 | psi-mi:“MI:0915”(physical association) | 0.400 |
| ACSL4 | YWHAZ | psi-mi:“MI:0915”(physical association) | 0.400 |
| ACSL4 | DSE | psi-mi:“MI:0915”(physical association) | 0.370 |
| ACSL4 | ACSL3 | psi-mi:“MI:0914”(association) | 0.350 |
| FOXA3 | DDX39A | psi-mi:“MI:0914”(association) | 0.350 |
| FOXL2 | DDX39A | psi-mi:“MI:0914”(association) | 0.350 |
| FOXQ1 | DDX39A | psi-mi:“MI:0914”(association) | 0.350 |
| FOXI2 | DDX39A | psi-mi:“MI:0914”(association) | 0.350 |
| FOXJ1 | ACSL4 | psi-mi:“MI:0914”(association) | 0.350 |
| ESYT2 | psi-mi:“MI:0914”(association) | 0.350 | |
| Prdm16 | ESYT2 | psi-mi:“MI:0914”(association) | 0.350 |
| Mecom | ESYT2 | psi-mi:“MI:0914”(association) | 0.350 |
| LRRK2 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (272): ACSL4 (Affinity Capture-MS), ACSL4 (Affinity Capture-MS), ACSL4 (Affinity Capture-MS), ACSL4 (Co-fractionation), ACSL3 (Affinity Capture-MS), ACSL4 (Affinity Capture-MS), BRF1 (Affinity Capture-MS), SLC1A5 (Affinity Capture-MS), ABCG1 (Affinity Capture-MS), EDEM1 (Affinity Capture-MS), MRPS15 (Affinity Capture-MS), TJAP1 (Affinity Capture-MS), ACSL4 (Affinity Capture-MS), ACSL4 (Affinity Capture-MS), ACSL4 (Affinity Capture-MS)
ESM2 similar proteins: A1L1K7, A7DZP8, B2KWI3, F4HUK6, I3PB36, M4IRL4, M4IS88, M4IS92, M4ISH1, M4ISH2, O22898, O35547, O60488, O80658, O95573, P30624, P35571, P39002, P39518, P47912, Q0P4F7, Q2KHW5, Q2XU92, Q4R4P9, Q4WR83, Q5FVE4, Q5R668, Q5ZKR7, Q63151, Q7ZYC4, Q8VCW8, Q8W471, Q924N5, Q96GR2, Q99PU5, Q9C7W4, Q9C8D4, Q9C9G2, Q9CAP8, Q9CZW4
Diamond homologs: A0A017SQ41, A0A0C1E6T8, A0A1B2CTC5, A0A1E3B0T2, A0A1L9NGU5, A0A1M3T4K3, A0A2I1D2N0, A0A2I2F262, A0A317VEE1, A0A318Z3U0, A0A319BQC1, A0A348AXX4, A0A395I3F8, A0A5K6CNB8, A0A823A819, A8M6W3, A8NS27, A8NVB7, B0CN26, B0XWK8, B6HLU1, B8NY88, C0LTL9, D4AU31, D9XF47, D9XF49, E9F8M3, G3XNF4, G7XQ31, M1WCQ3, O30408, O30409, O31782, O31827, O35547, O60488, O68006, O68007, O68008, O80658
SIGNOR signaling
2 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| ACSL4 | up-regulates | Ferroptosis | |
| miR-3173-5p | “down-regulates quantity by repression” | ACSL4 | “translation regulation” |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 156 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Metal ion SLC transporters | 5 | 30.7× | 7e-05 |
| R-HSA-425366 | 8 | 14.8× | 3e-05 |
| NCAM signaling for neurite out-growth | 5 | 13.9× | 1e-03 |
| SLC-mediated transmembrane transport | 10 | 6.0× | 3e-04 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| zinc ion transmembrane transport | 5 | 26.2× | 4e-04 |
| neurotransmitter transport | 6 | 18.9× | 4e-04 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
367 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 24 |
| Likely pathogenic | 10 |
| Uncertain significance | 135 |
| Likely benign | 29 |
| Benign | 13 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 11564 | NM_001318510.2(ACSL4):c.1585C>A (p.Arg529Ser) | Pathogenic |
| 11565 | NM_001318510.2(ACSL4):c.1003-2A>G | Pathogenic |
| 1180512 | GRCh37/hg19 Xq22.3-23(chrX:108168780-109606201)x0 | Pathogenic |
| 146790 | GRCh38/hg38 Xq22.1-23(chrX:100597687-111651116)x4 | Pathogenic |
| 1526838 | GRCh37/hg19 Xq22.2-23(chrX:103158718-111556067) | Pathogenic |
| 1675197 | NM_001318510.2(ACSL4):c.802del (p.Leu268fs) | Pathogenic |
| 1808673 | GRCh37/hg19 Xq21.33-24(chrX:93805850-118913329)x1 | Pathogenic |
| 1809431 | GRCh37/hg19 Xq23(chrX:108922296-111549785)x1 | Pathogenic |
| 221776 | GRCh37/hg19 Xq22.1-24(chrX:99931059-120328627)x1 | Pathogenic |
| 2684996 | GRCh37/hg19 Xq21.1-24(chrX:77212972-118576590)x3 | Pathogenic |
| 2685715 | GRCh37/hg19 Xq21.31-25(chrX:91274467-126799984)x1 | Pathogenic |
| 281523 | NM_001318510.2(ACSL4):c.845_846del (p.His282fs) | Pathogenic |
| 3342837 | NM_001318510.2(ACSL4):c.727C>T (p.Arg243Ter) | Pathogenic |
| 3382992 | NM_001318510.2(ACSL4):c.1235dup (p.Met413fs) | Pathogenic |
| 3391957 | GRCh37/hg19 Xq21.31-23(chrX:91004293-111532472)x1 | Pathogenic |
| 394085 | GRCh37/hg19 Xq22.3-23(chrX:107370001-110989043)x1 | Pathogenic |
| 394846 | GRCh37/hg19 Xq21.33-26.1(chrX:95498487-129063677)x3 | Pathogenic |
| 4076021 | GRCh37/hg19 Xq21.33-24(chrX:94003368-117218485)x1 | Pathogenic |
| 441843 | GRCh37/hg19 Xq13.3-24(chrX:74560735-116609286) | Pathogenic |
| 443106 | GRCh37/hg19 Xq21.31-23(chrX:86776682-114054291)x1 | Pathogenic |
| 548953 | GRCh37/hg19 Xq23(chrX:108919564-108929311) | Pathogenic |
| 58661 | GRCh38/hg38 Xq21.1-25(chrX:81261589-126519353)x3 | Pathogenic |
| 58667 | GRCh38/hg38 Xq23(chrX:109690866-110088881)x2 | Pathogenic |
| 979829 | GRCh37/hg19 Xq21.1-25(chrX:77514079-127770854)x1 | Pathogenic |
| 11566 | NM_001318510.2(ACSL4):c.1001C>T (p.Pro334Leu) | Likely pathogenic |
| 1328107 | GRCh37/hg19 Xq22.3-23(chrX:104782507-112949573)x2 | Likely pathogenic |
| 1691846 | NM_001318510.2(ACSL4):c.1653_1654insT (p.Lys552Ter) | Likely pathogenic |
| 1709879 | NM_001318510.2(ACSL4):c.1072_1073del (p.Leu358fs) | Likely pathogenic |
| 1710150 | NM_001318510.2(ACSL4):c.257del (p.Asn86fs) | Likely pathogenic |
| 3362695 | NM_001318510.2(ACSL4):c.1315+1G>A | Likely pathogenic |
SpliceAI
2211 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| X:109659348:A:AC | donor_gain | 1.0000 |
| X:109659349:C:CC | donor_gain | 1.0000 |
| X:109659349:CTTA:C | donor_gain | 1.0000 |
| X:109659352:A:AC | donor_gain | 1.0000 |
| X:109659352:AC:A | donor_loss | 1.0000 |
| X:109659352:ACTGG:A | donor_gain | 1.0000 |
| X:109659353:C:CA | donor_gain | 1.0000 |
| X:109659353:CT:C | donor_gain | 1.0000 |
| X:109659353:CTG:C | donor_gain | 1.0000 |
| X:109659353:CTGG:C | donor_gain | 1.0000 |
| X:109659353:CTGGC:C | donor_gain | 1.0000 |
| X:109659507:GATCA:G | acceptor_gain | 1.0000 |
| X:109659509:TCA:T | acceptor_gain | 1.0000 |
| X:109659510:CA:C | acceptor_gain | 1.0000 |
| X:109659510:CAC:C | acceptor_gain | 1.0000 |
| X:109659512:C:CC | acceptor_gain | 1.0000 |
| X:109659521:C:CT | acceptor_gain | 1.0000 |
| X:109659522:A:T | acceptor_gain | 1.0000 |
| X:109661527:TTACC:T | donor_loss | 1.0000 |
| X:109661529:A:AT | donor_loss | 1.0000 |
| X:109661530:C:A | donor_loss | 1.0000 |
| X:109661642:CGAT:C | acceptor_gain | 1.0000 |
| X:109661643:GATC:G | acceptor_loss | 1.0000 |
| X:109661647:T:G | acceptor_loss | 1.0000 |
| X:109663205:TCTGA:T | donor_loss | 1.0000 |
| X:109663206:CTGAC:C | donor_loss | 1.0000 |
| X:109663207:TGAC:T | donor_loss | 1.0000 |
| X:109663210:CC:C | donor_loss | 1.0000 |
| X:109663213:ATAAT:A | donor_gain | 1.0000 |
| X:109663227:T:TA | donor_gain | 1.0000 |
AlphaMissense
0 scored. Top likely-pathogenic:
dbSNP variants (sampled 300 via entrez): RS1000045784 (X:109675740 T>C), RS1000108129 (X:109664063 T>C), RS1000118090 (X:109671841 G>A), RS1000141308 (X:109703314 C>G), RS1000142335 (X:109710205 T>C), RS1000172317 (X:109671525 G>A,C), RS1000195179 (X:109709771 G>A), RS1000333740 (X:109681531 T>C), RS1000393082 (X:109641754 C>A,G,T), RS1000437938 (X:109682548 C>T), RS1000466811 (X:109642315 T>C), RS1000583254 (X:109713218 G>A), RS1000660457 (X:109684096 T>C), RS1000723429 (X:109644532 C>A), RS1000774772 (X:109684423 G>A)
Disease associations
OMIM: gene MIM:300157 | disease phenotypes: MIM:300387, MIM:309530
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| intellectual disability, X-linked 63 | Strong | X-linked |
| non-syndromic X-linked intellectual disability | Moderate | X-linked |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| non-syndromic X-linked intellectual disability | Definitive | XL |
Mondo (6): intellectual disability, X-linked 63 (MONDO:0010313), autism spectrum disorder (MONDO:0005258), intellectual disability (MONDO:0001071), primary ovarian failure (MONDO:0005387), non-syndromic X-linked intellectual disability (MONDO:0019181), ischemic stroke (MONDO:1060198)
Orphanet (4): X-linked non-syndromic intellectual disability (Orphanet:777), NON RARE IN EUROPE: Autism (Orphanet:106), NON RARE IN EUROPE: Unexplained intellectual disability (Orphanet:319658), NON RARE IN EUROPE: Primary ovarian failure (Orphanet:619)
HPO phenotypes
30 total (30 of 30 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000083 | Renal insufficiency |
| HP:0000093 | Proteinuria |
| HP:0000233 | Thin vermilion border |
| HP:0000252 | Microcephaly |
| HP:0000272 | Malar flattening |
| HP:0000365 | Hearing impairment |
| HP:0000463 | Anteverted nares |
| HP:0000486 | Strabismus |
| HP:0000494 | Downslanted palpebral fissures |
| HP:0000545 | Myopia |
| HP:0000729 | Autistic behavior |
| HP:0000739 | Anxiety |
| HP:0000750 | Delayed speech and language development |
| HP:0000944 | Abnormal metaphysis morphology |
| HP:0001182 | Tapered finger |
| HP:0001249 | Intellectual disability |
| HP:0001252 | Hypotonia |
| HP:0001347 | Hyperreflexia |
| HP:0001423 | X-linked dominant inheritance |
| HP:0001595 | Abnormal hair morphology |
| HP:0001643 | Patent ductus arteriosus |
| HP:0001646 | Abnormal aortic valve morphology |
| HP:0002907 | Microscopic hematuria |
| HP:0004445 | Elliptocytosis |
| HP:0005280 | Depressed nasal bridge |
| HP:0010864 | Severe intellectual disability |
| HP:0011069 | Supernumerary tooth |
| HP:0011463 | Childhood onset |
| HP:0012471 | Thick vermilion border |
| HP:0100820 | Glomerulopathy |
GWAS associations
1 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST90002395_644 | Mean platelet volume | 2.000000e-10 |
MeSH disease descriptors (4)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D008607 | Intellectual Disability | C10.597.606.360; C23.888.592.604.646; F01.700.687; F03.625.539 |
| D016649 | Primary Ovarian Insufficiency | C12.050.351.500.056.630.750; C12.100.250.056.630.750; C19.391.630.750 |
| C564522 | Mental Retardation, X-Linked 63 (supp.) | |
| C564490 | Mental Retardation, X-Linked Nonsyndromic (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL4680022 (SINGLE PROTEIN)
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
119 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| ferrostatin-1 | decreases reaction, increases abundance, decreases expression, affects reaction, increases expression | 7 |
| Benzo(a)pyrene | affects methylation, decreases expression, increases methylation | 5 |
| Valproic Acid | decreases expression, increases expression, decreases methylation, increases methylation, affects reaction | 5 |
| sodium arsenite | increases abundance, affects reaction, decreases expression, increases expression, decreases reaction (+1 more) | 4 |
| bisphenol A | decreases expression, increases expression, affects expression | 3 |
| deoxynivalenol | decreases expression, increases expression | 3 |
| methylmercuric chloride | decreases expression | 2 |
| trichostatin A | affects cotreatment, increases expression | 2 |
| cobaltous chloride | affects cotreatment, increases expression, decreases expression | 2 |
| Resveratrol | increases expression, affects cotreatment | 2 |
| Caffeine | affects phosphorylation, decreases expression | 2 |
| Chloroquine | decreases reaction, increases abundance, increases expression | 2 |
| Deferoxamine | increases expression, decreases reaction | 2 |
| Nickel | increases expression | 2 |
| Tretinoin | affects cotreatment, decreases expression, increases expression | 2 |
| Oleic Acid | affects cotreatment, increases expression, decreases expression | 2 |
| aristolochic acid I | decreases expression | 1 |
| aurantio-obtusin | increases expression | 1 |
| bisphenol F | increases expression | 1 |
| beauvericin | affects cotreatment, decreases expression | 1 |
| 2,4,6-tribromophenol | decreases expression | 1 |
| methyleugenol | decreases expression | 1 |
| pirinixic acid | decreases reaction, increases expression | 1 |
| lead acetate | decreases expression | 1 |
| nuciferine | decreases reaction, increases expression | 1 |
| leonurine | decreases reaction, increases expression | 1 |
| arsenite | affects binding, decreases reaction | 1 |
| Firemaster BP-6 | decreases reaction, increases expression, affects reaction | 1 |
| tris(1,3-dichloro-2-propyl)phosphate | decreases expression | 1 |
| beryllium sulfate | increases expression, decreases reaction, affects reaction, increases abundance | 1 |
ChEMBL screening assays
2 unique, capped per target: 2 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL4678695 | Binding | Inhibition of recombinant human ACSL4 assessed as reduction in acetyl-coA prodution incubated for 120 mins in presence of Coenzyme A, ATP and MgCl2 by MALDI-TOF MS analysis | Discovery of a benzimidazole series as the first highly potent and selective ACSL1 inhibitors. — Bioorg Med Chem Lett |
Cellosaurus cell lines
7 cell lines: 7 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_B5JF | HAP1 ACSL4 (-) 2 | Cancer cell line | Male |
| CVCL_D7FT | Abcam A-431 ACSL4 KO | Cancer cell line | Female |
| CVCL_DX21 | HAP1 ACSL3 (-) ACSL4 (-) | Cancer cell line | Male |
| CVCL_E0X3 | Ubigene L-02 ACSL4 KO | Cancer cell line | Female |
| CVCL_F1LR | HyCyte A-549 KO-hACSL4 | Cancer cell line | Male |
| CVCL_F1TU | HyCyte THP-1 KO-hACSL4 | Cancer cell line | Male |
| CVCL_XK99 | HAP1 ACSL4 (-) 1 | Cancer cell line | Male |
Clinical trials (associated diseases)
300 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00391261 | PHASE4 | COMPLETED | An Open-label Trial of Metformin for Weight Control of Pediatric Patients on Antipsychotic Medications. |
| NCT01028820 | PHASE4 | COMPLETED | FMRI Brain Activation of Aripiprazole Treatment in Autism Spectrum Disorders |
| NCT01333865 | PHASE4 | COMPLETED | A Study of Memantine Hydrochloride (Namenda®) for Cognitive and Behavioral Impairment in Adults With Autism Spectrum Disorders |
| NCT01337700 | PHASE4 | COMPLETED | Milnacipran in Autism and the Functional Locus Coeruleus and Noradrenergic Model of Autism |
| NCT01695200 | PHASE4 | COMPLETED | Omega-3 Fatty Acids in Autism Spectrum Disorders |
| NCT02096952 | PHASE4 | COMPLETED | Methylphenidate ER Liquid Formulation in Adults With ASD and ADHD |
| NCT02235467 | PHASE4 | COMPLETED | Multisite Study: Parental Training Using Video Modelling to Develop Social Skills in Children With Autism |
| NCT02940574 | PHASE4 | COMPLETED | Neural and Behavioral Effects of Oxytocin in Autism Spectrum Disorders |
| NCT03333629 | PHASE4 | COMPLETED | Promoting Positive Outcomes for Individuals With ASD: Linking Early Detection, Treatment, and Long-term Outcomes |
| NCT03337646 | PHASE4 | COMPLETED | Evaluation of the Effect and Safety of Lisdexamfetamine in Children Aged 6-12 With ADHD and Autism |
| NCT03538431 | PHASE4 | COMPLETED | Improving Driving in Young People With Autism Spectrum Disorders |
| NCT03757585 | PHASE4 | COMPLETED | Natural Treatments for the Management of Emotional Dysregulation in Youth With Non-verbal Learning Disability (NVLD) and/or Autism Spectrum Disorders (ASD) |
| NCT04903353 | PHASE4 | COMPLETED | Pragmatic Trial Comparing Weight Gain in Children With Autism Taking Risperidone Versus Aripiprazole |
| NCT05063656 | PHASE4 | COMPLETED | Biomarker-Driven Pharmacological Treatment of Adolescents With Autism Spectrum Disorder With Gabapentin |
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| NCT05916339 | PHASE4 | RECRUITING | AWARE: Management of ADHD in Autism Spectrum Disorder |
| NCT05954052 | PHASE4 | TERMINATED | A Study of Glutathione in Children With Autism Spectrum Disorder |
| NCT06853665 | PHASE4 | RECRUITING | The TEAM Study - Treatment Efficacy for Autism/Attention Using Mixed Amphetamine |
| NCT07054697 | PHASE4 | COMPLETED | Pilot-RCT With Individualized Homeopathic Treatment in the Children With Autism Spectrum Disorder |
| NCT07161804 | PHASE4 | COMPLETED | Pilot RCT Using Homeopathic Medicines in ASD |
| NCT07439042 | PHASE4 | NOT_YET_RECRUITING | Buspirone for Anxiety in Autistic Youth |
| NCT01302964 | PHASE3 | COMPLETED | Mirtazapine Treatment of Anxiety in Children and Adolescents With Pervasive Developmental Disorders |
| NCT01706523 | PHASE3 | TERMINATED | Open Label Extension Study of STX209 (Arbaclofen) in Autism Spectrum Disorders |
| NCT01825798 | PHASE3 | COMPLETED | Treatment of Overweight Induced by Antipsychotic Medication in Young People With Autism Spectrum Disorders (ASD) |
| NCT01972074 | PHASE3 | COMPLETED | Behavioral and Neural Response to Memantine in Adolescents With Autism Spectrum Disorder |
| NCT02985749 | PHASE3 | COMPLETED | A Study of Oxytocin for the Treatment of Social Impairment in Individuals With High Functioning Autism Spectrum Disorder |
| NCT03197922 | PHASE3 | COMPLETED | Treatment of Encopresis in Children With Autism Spectrum Disorders |
| NCT03504917 | PHASE3 | TERMINATED | A Study of Balovaptan in Adults With Autism Spectrum Disorder With a 2-Year Open-Label Extension |
| NCT03553875 | PHASE3 | TERMINATED | Memantine for the Treatment of Social Deficits in Youth With Disorders of Impaired Social Interactions |
| NCT03640156 | PHASE3 | COMPLETED | Modulating Socially Adaptive Mirror System Functioning in Autism by Oxytocin |
| NCT03715153 | PHASE3 | TERMINATED | Efficacy and Safety of Bumetanide Oral Liquid Formulation in Children Aged From 2 to Less Than 7 Years Old With Autism Spectrum Disorder. |
| NCT03715166 | PHASE3 | TERMINATED | Efficacy and Safety of Bumetanide Oral Liquid Formulation in Children and Adolescents Aged From 7 to Less Than 18 Years Old With Autism Spectrum Disorder |
| NCT04233502 | PHASE3 | WITHDRAWN | Efficacy and Safety of Slenyto for Insomnia in Children With ASD |
| NCT04578756 | PHASE3 | COMPLETED | Open-Label, Flexible-dose Study to Evaluate the Long-Term Safety and Tolerability of Cariprazine in the Treatment of Pediatric Participants With Schizophrenia, Bipolar I Disorder, or Autism Spectrum Disorder |
| NCT04623398 | PHASE3 | COMPLETED | Effect of Lithium in Patients With Autism Spectrum Disorder and Phelan-McDermid Syndrome (SHANK3 Haploinsufficiency) |
| NCT04725383 | PHASE3 | TERMINATED | Amitriptyline for Repetitive Behaviors in Autism Spectrum Disorders |
| NCT05212493 | PHASE3 | COMPLETED | The Effects of Medical Cannabis in Children With Autistic Spectrum Disorder |
| NCT05361707 | PHASE3 | UNKNOWN | Evaluating the Effects of Tasimelteon in Individuals With Autism Spectrum Disorder (ASD) and Sleep Disturbances |
| NCT05439616 | PHASE3 | COMPLETED | Study of Cariprazine Oral Capsules or Solution to Assess Adverse Events and Change in Irritability Due to Autism Spectrum Disorder (ASD) in Participants Aged 5-17 Years With ASD |
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Related Atlas pages
- Associated diseases: intellectual disability, X-linked 63, non-syndromic X-linked intellectual disability
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): intellectual disability, X-linked 63, ischemic stroke, non-syndromic X-linked intellectual disability