ACTC1
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Also known as CMD1R
Summary
ACTC1 (actin alpha cardiac muscle 1, HGNC:143) is a protein-coding gene on chromosome 15q14, encoding Actin, alpha cardiac muscle 1 (P68032). Actins are highly conserved proteins that are involved in various types of cell motility and are ubiquitously expressed in all eukaryotic cells.
Actins are highly conserved proteins that are involved in various types of cell motility. Polymerization of globular actin (G-actin) leads to a structural filament (F-actin) in the form of a two-stranded helix. Each actin can bind to four others. The protein encoded by this gene belongs to the actin family which is comprised of three main groups of actin isoforms, alpha, beta, and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. Defects in this gene have been associated with idiopathic dilated cardiomyopathy (IDC) and familial hypertrophic cardiomyopathy (FHC).
Source: NCBI Gene 70 — RefSeq curated summary.
At a glance
- Gene–disease (curated): hypertrophic cardiomyopathy (Definitive, ClinGen) — +8 more curated relationships
- GWAS associations: 3
- Clinical variants (ClinVar): 639 total — 19 pathogenic, 10 likely-pathogenic
- Phenotypes (HPO): 70
- Druggable target: yes
- Dosage sensitivity (ClinGen): haploinsufficiency little evidence, triplosensitivity no evidence
- MANE Select transcript:
NM_005159
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:143 |
| Approved symbol | ACTC1 |
| Name | actin alpha cardiac muscle 1 |
| Location | 15q14 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | CMD1R |
| Ensembl gene | ENSG00000159251 |
| Ensembl biotype | protein_coding |
| OMIM | 102540 |
| Entrez | 70 |
Gene structure
Transcript identifiers
Ensembl transcripts: 19 — 12 protein_coding, 3 retained_intron, 2 protein_coding_CDS_not_defined, 2 nonsense_mediated_decay
ENST00000290378, ENST00000557860, ENST00000560563, ENST00000647798, ENST00000648556, ENST00000650163, ENST00000713608, ENST00000713610, ENST00000713613, ENST00000713615, ENST00000713616, ENST00000713617, ENST00000868405, ENST00000868406, ENST00000868407, ENST00000868408, ENST00000920920, ENST00000953688, ENST00000953689
RefSeq mRNA: 5 — MANE Select: NM_005159
NM_001406482, NM_001406483, NM_001406484, NM_001406485, NM_005159
CCDS: CCDS10041
Canonical transcript exons
ENST00000290378 — 7 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001044284 | 34794680 | 34794830 |
| ENSE00001197654 | 34795506 | 34795549 |
| ENSE00001680366 | 34793245 | 34793569 |
| ENSE00003640648 | 34792408 | 34792569 |
| ENSE00003691578 | 34792090 | 34792281 |
| ENSE00004020477 | 34791114 | 34791295 |
| ENSE00004020480 | 34790230 | 34790555 |
Expression profiles
Bgee: expression breadth ubiquitous, 224 present calls, max score 99.99.
FANTOM5 (CAGE): breadth broad, TPM avg 79.4153 / max 17130.0013, expressed in 513 samples.
FANTOM5 promoters (19 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 149299 | 74.6926 | 464 |
| 149285 | 0.8124 | 170 |
| 149297 | 0.7929 | 116 |
| 149278 | 0.5816 | 158 |
| 149290 | 0.3877 | 115 |
| 149298 | 0.3759 | 149 |
| 149280 | 0.3158 | 95 |
| 149294 | 0.2681 | 85 |
| 149296 | 0.2427 | 88 |
| 149281 | 0.2271 | 82 |
Top tissues by expression
280 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| left ventricle myocardium | UBERON:0006566 | 99.99 | gold quality |
| heart right ventricle | UBERON:0002080 | 99.98 | gold quality |
| myocardium | UBERON:0002349 | 99.98 | gold quality |
| cardiac muscle of right atrium | UBERON:0003379 | 99.97 | gold quality |
| cardiac atrium | UBERON:0002081 | 99.96 | gold quality |
| right atrium auricular region | UBERON:0006631 | 99.96 | gold quality |
| apex of heart | UBERON:0002098 | 99.94 | gold quality |
| cardiac ventricle | UBERON:0002082 | 99.93 | gold quality |
| heart left ventricle | UBERON:0002084 | 99.93 | gold quality |
| vena cava | UBERON:0004087 | 99.84 | gold quality |
| gluteal muscle | UBERON:0002000 | 99.65 | gold quality |
| seminal vesicle | UBERON:0000998 | 99.53 | gold quality |
| heart | UBERON:0000948 | 99.22 | gold quality |
| blood vessel layer | UBERON:0004797 | 99.04 | gold quality |
| tibialis anterior | UBERON:0001385 | 98.45 | gold quality |
| popliteal artery | UBERON:0002250 | 98.05 | gold quality |
| tibial artery | UBERON:0007610 | 98.04 | gold quality |
| aorta | UBERON:0000947 | 97.76 | gold quality |
| skeletal muscle tissue of rectus abdominis | UBERON:0004511 | 97.63 | gold quality |
| mucosa of stomach | UBERON:0001199 | 97.57 | gold quality |
| ascending aorta | UBERON:0001496 | 97.50 | gold quality |
| thoracic aorta | UBERON:0001515 | 97.49 | gold quality |
| diaphragm | UBERON:0001103 | 97.38 | gold quality |
| body of tongue | UBERON:0011876 | 96.77 | gold quality |
| gastrocnemius | UBERON:0001388 | 96.72 | gold quality |
| descending thoracic aorta | UBERON:0002345 | 96.59 | gold quality |
| skeletal muscle tissue of biceps brachii | UBERON:0004502 | 96.34 | gold quality |
| right coronary artery | UBERON:0001625 | 95.92 | gold quality |
| urethra | UBERON:0000057 | 95.88 | gold quality |
| muscle of leg | UBERON:0001383 | 95.45 | gold quality |
Single-cell (SCXA)
Detected in 6 experiment(s), a significant marker in 6.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-GEOD-124472 | yes | 17318.62 |
| E-HCAD-56 | yes | 8083.29 |
| E-MTAB-9388 | yes | 3444.30 |
| E-ANND-5 | yes | 853.66 |
| E-MTAB-8271 | yes | 7.14 |
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): MYOD1, NKX2-5, SP1, SRF, TBP, YY1
miRNA regulators (miRDB)
120 targeting ACTC1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-30A-5P | 100.00 | 76.31 | 3233 |
| HSA-MIR-30B-5P | 100.00 | 76.29 | 3248 |
| HSA-MIR-30C-5P | 100.00 | 76.29 | 3248 |
| HSA-MIR-30D-5P | 100.00 | 76.32 | 3233 |
| HSA-MIR-30E-5P | 100.00 | 76.32 | 3242 |
| HSA-MIR-340-5P | 100.00 | 72.50 | 4437 |
| HSA-MIR-4692 | 100.00 | 67.32 | 2066 |
| HSA-MIR-5692A | 100.00 | 74.40 | 6850 |
| HSA-MIR-200B-3P | 100.00 | 73.31 | 2693 |
| HSA-MIR-200C-3P | 100.00 | 73.35 | 2685 |
| HSA-MIR-429 | 100.00 | 73.44 | 2698 |
| HSA-MIR-8485 | 100.00 | 77.57 | 4731 |
| HSA-MIR-4534 | 99.99 | 66.58 | 1907 |
| HSA-MIR-371B-5P | 99.99 | 75.34 | 4759 |
| HSA-MIR-511-3P | 99.99 | 68.85 | 1467 |
| HSA-MIR-4514 | 99.99 | 67.10 | 1870 |
| HSA-MIR-32-5P | 99.98 | 75.21 | 1964 |
| HSA-MIR-92A-3P | 99.98 | 75.21 | 1960 |
| HSA-MIR-92B-3P | 99.98 | 75.25 | 1955 |
| HSA-MIR-25-3P | 99.98 | 74.60 | 1817 |
| HSA-MIR-363-3P | 99.98 | 74.72 | 1821 |
| HSA-MIR-367-3P | 99.98 | 74.83 | 1819 |
| HSA-MIR-5696 | 99.98 | 72.36 | 4487 |
| HSA-MIR-373-5P | 99.98 | 75.36 | 4753 |
| HSA-MIR-616-5P | 99.98 | 75.58 | 4775 |
| HSA-MIR-568 | 99.98 | 69.86 | 2084 |
| HSA-MIR-4715-3P | 99.98 | 66.03 | 670 |
| HSA-MIR-6888-3P | 99.97 | 65.95 | 1170 |
| HSA-MIR-507 | 99.97 | 70.11 | 1915 |
| HSA-MIR-495-3P | 99.96 | 72.81 | 4197 |
Functional genomics
ClinGen dosage: haploinsufficiency 1 (little evidence), triplosensitivity 0 (no evidence). ClinGen Gene Dosage Map
Literature-anchored findings (GeneRIF, showing 39)
- actin has a function in cytoskeleton in mediating the spatial activation of Ras subfamily GTPases through the selective recruitment of GDP/GTP exchange factors (PMID:14988412)
- We present two cases, a father and son, with a novel missense mutation in the alpha actin gene.(Phe375Cys) (PMID:16967490)
- hypertrophic cardiomyopathy, left ventricular non-compaction (HCM and LVNC) may appear as overlapping entities. The ACTC E101K mutation should be considered in the genetic diagnosis of LVNC, apical HCM, and septal defects. (PMID:17611253)
- The results indicate that ACTC1 mutations or reduced ACTC1 levels may lead to atrial septal defect without signs of cardiomyopathy. (PMID:17947298)
- Functional effects of nemaline myopathy mutations on human skeletal alpha-actin. (PMID:18477565)
- Nine distinct mutations, 7 of them in MYH7, 1 in ACTC, and 1 in TNNT2, were found unrelated adult probands with left ventricular noncompaction and no other congenital heart anomalies (PMID:18506004)
- Gln(137) plays dual roles in actin polymerization, in both the conformational transition of the actin molecule and the mechanism of ATP hydrolysis (PMID:18515362)
- Data show that comparable levels of cardiac alpha-actin in the extraocular muscles of human, pig and sheep to those in the heart. (PMID:18952430)
- E99K inhibits the activation of the thin filament by myosin strong-binding whereas R312H demonstrates enhanced calcium activation. (PMID:19799913)
- Screening of MYH7, cardiac ACTC and TNNI3 genes in dilated cardiomyopathy patients revealed two missense mutations, seven silent mutations, two polymorphisms in MYH7 gene, and two missense mutations and one silent mutation pertaining to TNNI3 gene. (PMID:20086309)
- Variations in ACTC1 is associated with refractive errors and myopia. (PMID:20835239)
- Reduced ACTC1 expression might play a role in the onset of congenital heart defects through induction of cardiomyocyte apoptosis. (PMID:20962418)
- propose that the ACTC E99K mutation causes higher myofibrillar Ca(2+) sensitivity that is responsible for the sudden cardiac death, apical hypertrophy, and subsequent development of heart failure in humans and mice. (PMID:21622575)
- Data show that HMGN2 inhibited the attachment of bacteria, and then decreased bacteria-induced ERK1/2 activation and actin polymerization, which might contribute to bacterial internalization into T24 cells. (PMID:21778192)
- ACTC1 mutations Y166C and M305L are associated with hypertrophic cardiomyopathy (PMID:22643837)
- The authors demonstrate that clathrin promotes clustering of the vaccinia virus actin tail nucleator A36 and host N-WASP, which activates actin nucleation through the Arp2/3 complex. (PMID:22980331)
- In this study, there was no association of the analyzed SNPs located in RASGRF1. GJD2, and ACTC1 with pathological myopia. (PMID:23834555)
- Genetic variations at the ACTC1 gene may contribute to progression to chronic Chagas Cardiomyopathy (PMID:24367596)
- Our results provide further evidence supporting a causative role for ACTC1 mutations in ASD. Massively parallel sequencing of the exome allows for the detection of novel rare variants causing CHD without the limitations of a candidate gene approach. (PMID:24461919)
- Change in the ability of cMyBP-C to bind cardiac actin modified filaments might contribute to the development of disease. (PMID:24736382)
- highly penetrant, novel, heterozygous ACTC1I289T mutation is associated with a family with left ventricular noncompaction. (PMID:25201647)
- The first step of hypertrophic cardiomyopathy pathogenesis with E99K is increased calcium sensitivity and decreased calcium cooperativity, which result in larger tension during partial activation to cause a diastolic problem. (PMID:25451174)
- In adult Hypertrophic Cardiomyopathy patients, thin-filament gene ACTC1 mutations are associated with increased likelihood of advanced Left Ventricular dysfunction and heart failure compared with thick-filament disease. (PMID:25524337)
- We reported a case of mirror-type dextrocardia who developed HCM in adulthood exhibiting multiple genetic mutation related to sarcomere proteins (PMID:25863306)
- A heterozygous missense mutation was found (c.251T>C, p.(Met84Thr)) in the ACTC1 gene (PMID:26061005)
- ACTC1 is expressed in a large subset of gliomas, especially high-grade tumors. ACTC1-positive gliomas indicated poorer prognosis compared with ACTC1-negative gliomas. (PMID:27081897)
- These findings suggest that the familial ostium secundum atrial septal defect (ASDII)may be a result of an ACTC1 3’UTR gain-of-function mutation caused by the introduction of a new miR-139-5p target site. Our results provide the first evidence of a pathogenic mutation in the ACTC1 3’UTR that may be associated with familial isolated ASDII. (PMID:27139165)
- In conclusion, given that ACTC1 upregulation is associated with improved muscle function in certain myopathies, we hypothesize that upregulation of ACTC1 may represent a compensatory response to androgen deprivation therapy-induced muscle loss (PMID:28756295)
- Novel p.(Ala21Val) mutation of ACTC1 causes myofibrillar and intercalated disc alteration leading to familial hypertrophic cardiomyopathy and LV myocardial noncompaction with transmural crypts. (PMID:29440008)
- arrhythmogenesis was evident in all E99K-ACTC1 human induced pluripotent stem cell-derived cardiomyocytes. (PMID:30392975)
- A combined phenotype of atrial-septal defects and late-onset heart failure was caused by a heterozygous, nonsynonymous ACTC1 mutation. (PMID:31430208)
- These data suggest that human ACTC1 p. Gly247Asp mutation negatively regulates serum response factor -signaling likely contributing to the late-onset dilated cardiomyopathy observed in mutation carrier patients. (PMID:31434612)
- Use of a human embryonic stem cell model to discover GABRP, WFDC2, VTCN1 and ACTC1 as markers of early first trimester human trophoblast. (PMID:32359161)
- Whole blood ACTB, B2M and GAPDH expression reflects activity of inflammatory bowel disease, advancement of colorectal cancer, and correlates with circulating inflammatory and angiogenic factors: Relevance for real-time quantitative PCR. (PMID:32424999)
- The Dark Side of Actin: Cardiac actin variants highlight the role of allostery in disease development. (PMID:33049292)
- Mutational Assessment in NKX2-5 and ACTC1 Genes in Patients with Congenital Cardiac Septal Defect (CCSD) from Ethnic Kashmiri Population. (PMID:36011517)
- Description of a Novel Cardiac Phenotype Associated With a Missense Variant in the Cardiac alpha-Actin (ACTC1) Gene. (PMID:36960733)
- Cardiac troponin T N-domain variant destabilizes the actin interface resulting in disturbed myofilament function. (PMID:37252999)
- Variants in ACTC1 underlie distal arthrogryposis accompanied by congenital heart defects. (PMID:37457373)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | actc2 | ENSDARG00000057911 |
| mus_musculus | Actc1 | ENSMUSG00000068614 |
| rattus_norvegicus | Actc1 | ENSRNOG00000008536 |
Paralogs (26): ACTR6 (ENSG00000075089), ACTB (ENSG00000075624), ACTL6B (ENSG00000077080), ACTR5 (ENSG00000101442), ACTR3C (ENSG00000106526), ACTA2 (ENSG00000107796), ACTR8 (ENSG00000113812), ACTR1B (ENSG00000115073), ACTR3 (ENSG00000115091), ACTL8 (ENSG00000117148), ACTRT1 (ENSG00000123165), ACTR10 (ENSG00000131966), ACTR3B (ENSG00000133627), ACTL6A (ENSG00000136518), ACTR2 (ENSG00000138071), ACTR1A (ENSG00000138107), ACTA1 (ENSG00000143632), ACTL7B (ENSG00000148156), ACTG2 (ENSG00000163017), ACTBL2 (ENSG00000169067), ACTRT2 (ENSG00000169717), ACTL9 (ENSG00000181786), ACTG1 (ENSG00000184009), ACTRT3 (ENSG00000184378), ACTL7A (ENSG00000187003), ACTL10 (ENSG00000288649)
Protein
Protein identifiers
Actin, alpha cardiac muscle 1 — P68032 (reviewed: P68032)
Alternative names: Alpha-cardiac actin
All UniProt accessions (5): P68032, A0AAQ5BGG2, A0AAQ5BGI5, A0AAQ5BGK4, A0AAQ5BGK5
UniProt curated annotations — full annotation on UniProt →
Function. Actins are highly conserved proteins that are involved in various types of cell motility and are ubiquitously expressed in all eukaryotic cells.
Subunit / interactions. Polymerization of globular actin (G-actin) leads to a structural filament (F-actin) in the form of a two-stranded helix. Each actin can bind to 4 others.
Subcellular location. Cytoplasm. Cytoskeleton.
Post-translational modifications. Oxidation of Met-46 and Met-49 by MICALs (MICAL1, MICAL2 or MICAL3) to form methionine sulfoxide promotes actin filament depolymerization. MICAL1 and MICAL2 produce the (R)-S-oxide form. The (R)-S-oxide form is reverted by MSRB1 and MSRB2, which promotes actin repolymerization. Monomethylation at Lys-86 (K86me1) regulates actin-myosin interaction and actomyosin-dependent processes. Demethylation by ALKBH4 is required for maintaining actomyosin dynamics supporting normal cleavage furrow ingression during cytokinesis and cell migration. N-terminal cleavage of acetylated cysteine of intermediate muscle actin by ACTMAP. Methylated at His-75 by SETD3. (Microbial infection) Monomeric actin is cross-linked by V.cholerae toxins RtxA and VgrG1 in case of infection: bacterial toxins mediate the cross-link between Lys-52 of one monomer and Glu-272 of another actin monomer, resulting in formation of highly toxic actin oligomers that cause cell rounding. The toxin can be highly efficient at very low concentrations by acting on formin homology family proteins: toxic actin oligomers bind with high affinity to formins and adversely affect both nucleation and elongation abilities of formins, causing their potent inhibition in both profilin-dependent and independent manners.
Disease relevance. Cardiomyopathy, dilated, 1R (CMD1R) [MIM:613424] A disorder characterized by ventricular dilation and impaired systolic function, resulting in congestive heart failure and arrhythmia. Patients are at risk of premature death. The disease is caused by variants affecting the gene represented in this entry. Cardiomyopathy, familial hypertrophic, 11 (CMH11) [MIM:612098] A hereditary heart disorder characterized by ventricular hypertrophy, which is usually asymmetric and often involves the interventricular septum. The symptoms include dyspnea, syncope, collapse, palpitations, and chest pain. They can be readily provoked by exercise. The disorder has inter- and intrafamilial variability ranging from benign to malignant forms with high risk of cardiac failure and sudden cardiac death. The disease is caused by variants affecting the gene represented in this entry. Atrial septal defect 5 (ASD5) [MIM:612794] A congenital heart malformation characterized by incomplete closure of the wall between the atria resulting in blood flow from the left to the right atria. The disease is caused by variants affecting the gene represented in this entry.
Miscellaneous. In vertebrates 3 main groups of actin isoforms, alpha, beta and gamma have been identified. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins coexist in most cell types as components of the cytoskeleton and as mediators of internal cell motility.
Similarity. Belongs to the actin family.
RefSeq proteins (5): NP_001393411, NP_001393412, NP_001393413, NP_001393414, NP_005150* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR004000 | Actin | Family |
| IPR004001 | Actin_CS | Conserved_site |
| IPR020902 | Actin/actin-like_CS | Conserved_site |
| IPR043129 | ATPase_NBD | Homologous_superfamily |
Pfam: PF00022
Catalyzed reactions (Rhea), 1 shown:
- ATP + H2O = ADP + phosphate + H(+) (RHEA:13065)
UniProt features (63 total): helix 23, strand 17, sequence variant 11, modified residue 5, chain 2, turn 2, cross-link 2, initiator methionine 1
Structure
Experimental structures (PDB)
16 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 8GT1 | X-RAY DIFFRACTION | 1.35 |
| 8GSW | X-RAY DIFFRACTION | 1.4 |
| 8GT5 | X-RAY DIFFRACTION | 1.4 |
| 8GSU | X-RAY DIFFRACTION | 1.5 |
| 8GT2 | X-RAY DIFFRACTION | 1.5 |
| 8GT3 | X-RAY DIFFRACTION | 1.5 |
| 8GT4 | X-RAY DIFFRACTION | 1.55 |
| 9ZBL | ELECTRON MICROSCOPY | 2.79 |
| 8ZI9 | ELECTRON MICROSCOPY | 3.08 |
| 9BPH | ELECTRON MICROSCOPY | 3.12 |
| 9ZBP | ELECTRON MICROSCOPY | 3.12 |
| 8ZB7 | ELECTRON MICROSCOPY | 3.19 |
| 9BPM | ELECTRON MICROSCOPY | 3.42 |
| 9B3R | ELECTRON MICROSCOPY | 3.5 |
| 9B3Q | ELECTRON MICROSCOPY | 3.6 |
| 8ZJ1 | ELECTRON MICROSCOPY | 4.25 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P68032-F1 | 95.47 | 0.93 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (7): 2, 46, 49, 75, 86, 52, 272
Function
Pathways and Gene Ontology
Reactome pathways
13 pathways
| ID | Pathway |
|---|---|
| R-HSA-390522 | Striated Muscle Contraction |
| R-HSA-8980692 | RHOA GTPase cycle |
| R-HSA-9013026 | RHOB GTPase cycle |
| R-HSA-9764561 | Regulation of CDH1 Function |
| R-HSA-9913351 | Formation of the dystrophin-glycoprotein complex (DGC) |
| R-HSA-9958825 | Activation of STAT3 by cadherin engagement |
| R-HSA-1474244 | Extracellular matrix organization |
| R-HSA-162582 | Signal Transduction |
| R-HSA-194315 | Signaling by Rho GTPases |
| R-HSA-3000171 | Non-integrin membrane-ECM interactions |
| R-HSA-397014 | Muscle contraction |
| R-HSA-9012999 | RHO GTPase cycle |
| R-HSA-9716542 | Signaling by Rho GTPases, Miro GTPases and RHOBTB3 |
MSigDB gene sets: 374 (showing top):
GOBP_RESPONSE_TO_ETHANOL, BERENJENO_ROCK_SIGNALING_NOT_VIA_RHOA_DN, GOBP_MUSCLE_TISSUE_DEVELOPMENT, WWTAAGGC_UNKNOWN, PAX4_01, GOBP_CIRCULATORY_SYSTEM_PROCESS, GOBP_STRIATED_MUSCLE_CELL_DIFFERENTIATION, chr15q14, GOBP_CARDIAC_MYOFIBRIL_ASSEMBLY, MEF2_02, MODULE_329, GGGTGGRR_PAX4_03, CAGCTG_AP4_Q5, GNF2_MYL3, SRF_Q5_01
GO Biological Process (15): actin filament organization (GO:0007015), response to xenobiotic stimulus (GO:0009410), positive regulation of gene expression (GO:0010628), actin filament-based movement (GO:0030048), skeletal muscle thin filament assembly (GO:0030240), actomyosin structure organization (GO:0031032), actin-myosin filament sliding (GO:0033275), negative regulation of apoptotic process (GO:0043066), response to ethanol (GO:0045471), cardiac myofibril assembly (GO:0055003), cardiac muscle tissue morphogenesis (GO:0055008), heart contraction (GO:0060047), cardiac muscle contraction (GO:0060048), cytoplasmic actin-based contraction involved in cell motility (GO:0060327), mesenchyme migration (GO:0090131)
GO Molecular Function (6): microfilament motor activity (GO:0000146), ATP binding (GO:0005524), hydrolase activity (GO:0016787), myosin binding (GO:0017022), nucleotide binding (GO:0000166), protein binding (GO:0005515)
GO Cellular Component (17): obsolete extracellular space (GO:0005615), cytoplasm (GO:0005737), cytosol (GO:0005829), actin filament (GO:0005884), focal adhesion (GO:0005925), actin cytoskeleton (GO:0015629), membrane (GO:0016020), sarcomere (GO:0030017), lamellipodium (GO:0030027), filopodium (GO:0030175), I band (GO:0031674), cell body (GO:0044297), extracellular exosome (GO:0070062), blood microparticle (GO:0072562), glutamatergic synapse (GO:0098978), cytoskeleton (GO:0005856), synapse (GO:0045202)
Reactome top-level categories
Rollup of top-9 pathways:
| Category | Pathways |
|---|---|
| RHO GTPase cycle | 2 |
| Muscle contraction | 1 |
| Regulation of CDH1 Expression and Function | 1 |
| Non-integrin membrane-ECM interactions | 1 |
| Adherens junctions interactions | 1 |
| Signaling by Rho GTPases, Miro GTPases and RHOBTB3 | 1 |
| Extracellular matrix organization | 1 |
| Signaling by Rho GTPases | 1 |
| Signal Transduction | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 7 |
| actin cytoskeleton organization | 2 |
| actin-mediated cell contraction | 2 |
| supramolecular fiber organization | 1 |
| response to chemical | 1 |
| gene expression | 1 |
| regulation of gene expression | 1 |
| positive regulation of macromolecule biosynthetic process | 1 |
| actin filament-based process | 1 |
| actin filament organization | 1 |
| skeletal myofibril assembly | 1 |
| apoptotic process | 1 |
| regulation of apoptotic process | 1 |
| negative regulation of programmed cell death | 1 |
| response to alcohol | 1 |
| myofibril assembly | 1 |
| cardiac muscle cell development | 1 |
| heart morphogenesis | 1 |
| cardiac muscle tissue development | 1 |
| muscle tissue morphogenesis | 1 |
| heart process | 1 |
| blood circulation | 1 |
| striated muscle contraction | 1 |
| heart contraction | 1 |
| cell motility | 1 |
| mesenchyme morphogenesis | 1 |
| tissue migration | 1 |
| cytoskeletal motor activity | 1 |
| polypeptide conformation or assembly isomerase activity | 1 |
| ATP-dependent activity | 1 |
| adenyl ribonucleotide binding | 1 |
| purine ribonucleoside triphosphate binding | 1 |
| catalytic activity | 1 |
| cytoskeletal protein binding | 1 |
| nucleoside phosphate binding | 1 |
| heterocyclic compound binding | 1 |
| binding | 1 |
| intracellular anatomical structure | 1 |
| cytoplasm | 1 |
| actin cytoskeleton | 1 |
Protein interactions and networks
STRING
0 interactions, top by confidence (×1000):
IntAct
148 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| SMARCB1 | ARID1A | psi-mi:“MI:0914”(association) | 0.860 |
| DPF2 | ARID1A | psi-mi:“MI:0914”(association) | 0.730 |
| TWF2 | CAP2 | psi-mi:“MI:0914”(association) | 0.640 |
| BCL7C | ARID1A | psi-mi:“MI:0914”(association) | 0.640 |
| DCAF7 | PFDN6 | psi-mi:“MI:0914”(association) | 0.570 |
| ACTC1 | CFL1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| CFL1 | ACTC1 | psi-mi:“MI:0914”(association) | 0.560 |
| ACTC1 | MYBPC3 | psi-mi:“MI:0915”(physical association) | 0.550 |
| MYBPC3 | ACTC1 | psi-mi:“MI:0915”(physical association) | 0.550 |
| DAPK1 | SVIL | psi-mi:“MI:0914”(association) | 0.530 |
| PHACTR2 | POTEI | psi-mi:“MI:0914”(association) | 0.530 |
| NDUFA4L2 | POTEI | psi-mi:“MI:0914”(association) | 0.530 |
| NPB | CST4 | psi-mi:“MI:0914”(association) | 0.530 |
| CAP2 | POTEI | psi-mi:“MI:0914”(association) | 0.530 |
| DUSP10 | ACTB | psi-mi:“MI:0914”(association) | 0.530 |
| REG3A | ACTB | psi-mi:“MI:0914”(association) | 0.530 |
| FBXO40 | MYO1D | psi-mi:“MI:0914”(association) | 0.530 |
| LRRC20 | ACTB | psi-mi:“MI:0914”(association) | 0.530 |
| TMCC2 | CORO1A | psi-mi:“MI:0914”(association) | 0.530 |
| ZMYM4 | ILVBL | psi-mi:“MI:0914”(association) | 0.530 |
| ESR1 | psi-mi:“MI:0914”(association) | 0.460 | |
| RBM45 | HNRNPDL | psi-mi:“MI:0914”(association) | 0.460 |
| PLA2R1 | ACTC1 | psi-mi:“MI:0915”(physical association) | 0.400 |
| DBN1 | ACTC1 | psi-mi:“MI:0915”(physical association) | 0.400 |
| NLRC3 | ACTC1 | psi-mi:“MI:0915”(physical association) | 0.400 |
| PLCZ1 | ACTC1 | psi-mi:“MI:0915”(physical association) | 0.400 |
| CHRAC1 | ACTC1 | psi-mi:“MI:0915”(physical association) | 0.400 |
| SCYL2 | ACTC1 | psi-mi:“MI:0915”(physical association) | 0.400 |
BioGRID (848): ACTC1 (Affinity Capture-MS), ACTC1 (Affinity Capture-MS), ACTC1 (Affinity Capture-MS), ACTC1 (Two-hybrid), ACTC1 (Affinity Capture-MS), ACTC1 (Affinity Capture-MS), ACTC1 (Affinity Capture-MS), ACTC1 (Affinity Capture-MS), ACTC1 (Affinity Capture-MS), ACTC1 (Affinity Capture-MS), ACTC1 (Affinity Capture-MS), ACTC1 (Affinity Capture-MS), ACTC1 (Reconstituted Complex), ACTC1 (Biochemical Activity), ACTC1 (Affinity Capture-MS)
ESM2 similar proteins: O15998, P04751, P04752, P07829, P0CJ46, P0CJ47, P10995, P12717, P20399, P26198, P27130, P41113, P49055, P53457, P53460, P53465, P53466, P53473, P53475, P53479, P53480, P53482, P62736, P62737, P62738, P62739, P62740, P68032, P68033, P68034, P68035, P68133, P68134, P68135, P68136, P68137, P68138, P68139, P68140, P68264
Diamond homologs: A2WKK5, A2XLF2, A2XNS1, A2ZP58, A3C6D7, D0LWX4, O16808, O18499, O65314, O65315, O65316, O81221, P02576, P04751, P07828, P07830, P07836, P07837, P08023, P0C539, P0C540, P0C542, P0CJ46, P0CJ47, P10981, P12716, P12717, P17126, P17304, P18601, P23343, P24902, P30162, P30164, P30165, P30167, P30168, P30169, P30171, P30172
SIGNOR signaling
1 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| YY1 | “down-regulates quantity by repression” | ACTC1 | “transcriptional regulation” |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 161 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Formation of the embryonic stem cell BAF (esBAF) complex | 6 | 37.2× | 5e-06 |
| Formation of the canonical BAF (cBAF) complex | 5 | 32.7× | 7e-05 |
| Formation of neuronal progenitor and neuronal BAF (npBAF and nBAF) | 6 | 28.3× | 2e-05 |
| Sensory processing of sound | 6 | 19.1× | 9e-05 |
| Regulation of MITF-M-dependent genes involved in pigmentation | 5 | 13.7× | 2e-03 |
| Sensory processing of sound by outer hair cells of the cochlea | 6 | 12.6× | 8e-04 |
| Sensory processing of sound by inner hair cells of the cochlea | 7 | 11.8× | 2e-04 |
| Regulation of actin dynamics for phagocytic cup formation | 6 | 11.4× | 1e-03 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| barbed-end actin filament capping | 6 | 35.7× | 1e-05 |
| actin polymerization or depolymerization | 5 | 28.4× | 3e-04 |
| regulation of G0 to G1 transition | 5 | 25.0× | 3e-04 |
| regulation of nucleotide-excision repair | 5 | 22.3× | 4e-04 |
| regulation of mitotic metaphase/anaphase transition | 5 | 18.4× | 9e-04 |
| cell motility | 6 | 17.8× | 3e-04 |
| positive regulation of stem cell population maintenance | 5 | 12.7× | 3e-03 |
| positive regulation of double-strand break repair | 5 | 12.7× | 3e-03 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
639 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 19 |
| Likely pathogenic | 10 |
| Uncertain significance | 311 |
| Likely benign | 209 |
| Benign | 33 |
Top pathogenic / likely-pathogenic (29)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1284894 | NM_005159.5(ACTC1):c.811A>G (p.Met271Val) | Pathogenic |
| 1341971 | GRCh37/hg19 15q14(chr15:33809650-40027263)x1 | Pathogenic |
| 149530 | GRCh38/hg38 15q11.2-14(chr15:23319714-38545325)x3 | Pathogenic |
| 155138 | GRCh38/hg38 15q11.2-14(chr15:25033869-37204304)x1 | Pathogenic |
| 18325 | NM_005159.5(ACTC1):c.889G>T (p.Ala297Ser) | Pathogenic |
| 18329 | NM_005159.5(ACTC1):c.997G>C (p.Ala333Pro) | Pathogenic |
| 18331 | NM_005159.5(ACTC1):c.301G>A (p.Glu101Lys) | Pathogenic |
| 2427227 | NC_000015.9:g.(?34526072)(35087019_?)del | Pathogenic |
| 2684748 | GRCh37/hg19 15q11.2-14(chr15:22770422-36556562)x3 | Pathogenic |
| 3063372 | GRCh37/hg19 15q14(chr15:34990168-39236311)x1 | Pathogenic |
| 3063379 | GRCh37/hg19 15q11.2-21.2(chr15:22770421-50347130)x3 | Pathogenic |
| 3063381 | GRCh37/hg19 15q11.2-14(chr15:22836883-39108014)x1 | Pathogenic |
| 4682868 | GRCh37/hg19 15q14(chr15:34120023-39406778)x1 | Pathogenic |
| 57451 | GRCh38/hg38 15q13.3-14(chr15:32607298-35200429)x3 | Pathogenic |
| 57877 | GRCh38/hg38 15q13.3-15.1(chr15:32635803-40233825)x1 | Pathogenic |
| 57878 | GRCh38/hg38 15q14(chr15:34588015-39280404)x1 | Pathogenic |
| 815687 | GRCh37/hg19 15q11.2-14(chr15:22770421-36861479)x1 | Pathogenic |
| 815698 | GRCh37/hg19 15q13.3-14(chr15:31675452-35689958)x1 | Pathogenic |
| 815702 | GRCh37/hg19 15q14(chr15:34197488-38656254)x1 | Pathogenic |
| 1306876 | NM_005159.5(ACTC1):c.635G>C (p.Arg212Pro) | Likely pathogenic |
| 1335942 | NM_005159.5(ACTC1):c.344A>G (p.Lys115Arg) | Likely pathogenic |
| 1469293 | NM_005159.5(ACTC1):c.155A>C (p.Lys52Thr) | Likely pathogenic |
| 1526046 | NM_005159.5(ACTC1):c.663_679dup (p.Asn227fs) | Likely pathogenic |
| 2015662 | NM_005159.5(ACTC1):c.581T>A (p.Ile194Asn) | Likely pathogenic |
| 2575660 | NM_005159.5(ACTC1):c.830A>G (p.His277Arg) | Likely pathogenic |
| 2579718 | NM_005159.5(ACTC1):c.1121G>A (p.Arg374His) | Likely pathogenic |
| 4072043 | NM_005159.5(ACTC1):c.643A>G (p.Lys215Glu) | Likely pathogenic |
| 4783293 | NM_005159.5(ACTC1):c.716A>T (p.Glu239Val) | Likely pathogenic |
| 520471 | NM_005159.5(ACTC1):c.715G>C (p.Glu239Gln) | Likely pathogenic |
SpliceAI
686 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 15:34791109:TTTAC:T | donor_loss | 1.0000 |
| 15:34791111:TACCT:T | donor_loss | 1.0000 |
| 15:34791112:ACCTT:A | donor_loss | 1.0000 |
| 15:34791113:C:A | donor_loss | 1.0000 |
| 15:34791296:C:CA | acceptor_loss | 1.0000 |
| 15:34792085:CTCA:C | donor_loss | 1.0000 |
| 15:34792086:TCACC:T | donor_loss | 1.0000 |
| 15:34792088:A:AC | donor_gain | 1.0000 |
| 15:34792088:AC:A | donor_gain | 1.0000 |
| 15:34792089:C:CG | donor_gain | 1.0000 |
| 15:34792089:CC:C | donor_gain | 1.0000 |
| 15:34792089:CCA:C | donor_gain | 1.0000 |
| 15:34792089:CCAA:C | donor_gain | 1.0000 |
| 15:34792277:TTCAG:T | acceptor_gain | 1.0000 |
| 15:34792278:TCAG:T | acceptor_gain | 1.0000 |
| 15:34792279:CAG:C | acceptor_gain | 1.0000 |
| 15:34792279:CAGC:C | acceptor_gain | 1.0000 |
| 15:34792280:AG:A | acceptor_gain | 1.0000 |
| 15:34792281:GC:G | acceptor_loss | 1.0000 |
| 15:34792282:C:CA | acceptor_loss | 1.0000 |
| 15:34792282:C:CC | acceptor_gain | 1.0000 |
| 15:34792285:C:CT | acceptor_gain | 1.0000 |
| 15:34792286:A:T | acceptor_gain | 1.0000 |
| 15:34792399:CACA:C | donor_gain | 1.0000 |
| 15:34792401:CA:C | donor_gain | 1.0000 |
| 15:34792404:TCAC:T | donor_loss | 1.0000 |
| 15:34792405:CACCA:C | donor_loss | 1.0000 |
| 15:34792406:A:AC | donor_gain | 1.0000 |
| 15:34792406:AC:A | donor_gain | 1.0000 |
| 15:34792406:ACC:A | donor_loss | 1.0000 |
AlphaMissense
2494 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 15:34790431:A:T | V372D | 1.000 |
| 15:34790484:G:C | F354L | 1.000 |
| 15:34790484:G:T | F354L | 1.000 |
| 15:34790486:A:G | F354L | 1.000 |
| 15:34790494:A:G | L351P | 1.000 |
| 15:34790494:A:T | L351Q | 1.000 |
| 15:34790500:G:T | A349D | 1.000 |
| 15:34790503:A:G | L348P | 1.000 |
| 15:34790506:A:T | I347N | 1.000 |
| 15:34790509:G:A | S346F | 1.000 |
| 15:34790510:A:G | S346P | 1.000 |
| 15:34790512:C:A | G345V | 1.000 |
| 15:34790512:C:T | G345D | 1.000 |
| 15:34790513:C:G | G345R | 1.000 |
| 15:34790515:C:A | G344V | 1.000 |
| 15:34790515:C:T | G344E | 1.000 |
| 15:34790516:C:A | G344W | 1.000 |
| 15:34790516:C:G | G344R | 1.000 |
| 15:34790516:C:T | G344R | 1.000 |
| 15:34790520:C:A | W342C | 1.000 |
| 15:34790520:C:G | W342C | 1.000 |
| 15:34790522:A:G | W342R | 1.000 |
| 15:34790522:A:T | W342R | 1.000 |
| 15:34791163:C:G | R314P | 1.000 |
| 15:34791164:G:T | R314S | 1.000 |
| 15:34791196:C:A | G303V | 1.000 |
| 15:34791196:C:T | G303E | 1.000 |
| 15:34791197:C:G | G303R | 1.000 |
| 15:34791197:C:T | G303R | 1.000 |
| 15:34791220:A:G | L295P | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000527685 (15:34790221 A>C), RS1000593663 (15:34793094 C>G), RS1001337212 (15:34796531 G>T), RS1001866225 (15:34791773 A>T), RS1002070414 (15:34789958 A>T), RS1002080271 (15:34790112 T>A,G), RS1002294264 (15:34792125 C>T), RS1002303685 (15:34797460 G>T), RS1002880953 (15:34795087 G>A), RS1003024164 (15:34795085 G>A), RS1003342438 (15:34795254 A>G), RS1003464651 (15:34795266 C>A,T), RS1003523293 (15:34790451 A>G,T), RS1004432733 (15:34791018 C>A,G,T), RS1006819960 (15:34792664 A>G,T)
Disease associations
OMIM: gene MIM:102540 | disease phenotypes: MIM:612098, MIM:612794, MIM:613424, MIM:616898, MIM:192600, MIM:604169, MIM:115195, MIM:115200
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| hypertrophic cardiomyopathy 11 | Definitive | Autosomal dominant |
| hypertrophic cardiomyopathy | Definitive | Autosomal dominant |
| atrial septal defect 5 | Strong | Autosomal dominant |
| dilated cardiomyopathy 1R | Strong | Autosomal dominant |
| dilated cardiomyopathy | Strong | Autosomal dominant |
| distal arthrogryposis | Strong | Autosomal dominant |
| arthrogryposis syndrome | Moderate | Autosomal dominant |
| familial isolated dilated cardiomyopathy | Supportive | Autosomal dominant |
ClinGen Gene-Disease Validity (3)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| hypertrophic cardiomyopathy | Definitive | AD |
| dilated cardiomyopathy 1R | Moderate | AD |
| arrhythmogenic right ventricular cardiomyopathy | No Known Disease Relationship | AD |
Mondo (16): hypertrophic cardiomyopathy 11 (MONDO:0012799), atrial septal defect 5 (MONDO:0013011), dilated cardiomyopathy 1R (MONDO:0013261), cardiomyopathy (MONDO:0004994), hypertrophic cardiomyopathy (MONDO:0005045), 15q14 microdeletion syndrome (MONDO:0014822), dilated cardiomyopathy (MONDO:0005021), familial hypertrophic cardiomyopathy (MONDO:0024573), left ventricular noncompaction 4 (MONDO:0800350), arthrogryposis (MONDO:0008779), left ventricular noncompaction 1 (MONDO:0011403), hypertrophic cardiomyopathy 2 (MONDO:0007266), dilated cardiomyopathy 1A (MONDO:0007269), (MONDO:0015470), distal arthrogryposis (MONDO:0019942)
Orphanet (10): Interatrial communication (Orphanet:1478), Familial isolated dilated cardiomyopathy (Orphanet:154), Left ventricular noncompaction (Orphanet:54260), Rare cardiomyopathy (Orphanet:167848), Rare hypertrophic cardiomyopathy (Orphanet:217569), Cleft palate-congenital heart defect-intellectual disability syndrome due to 15q14 microdeletion (Orphanet:261190), Dilated cardiomyopathy (Orphanet:217604), Rare familial disorder with hypertrophic cardiomyopathy (Orphanet:99739), Familial dilated cardiomyopathy with conduction defect due to LMNA mutation (Orphanet:300751), NON RARE IN EUROPE: Familial isolated hypertrophic cardiomyopathy (Orphanet:155)
HPO phenotypes
70 total (30 of 70 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000407 | Sensorineural hearing impairment |
| HP:0000961 | Cyanosis |
| HP:0000969 | Edema |
| HP:0001279 | Syncope |
| HP:0001297 | Stroke |
| HP:0001631 | Atrial septal defect |
| HP:0001633 | Abnormal mitral valve morphology |
| HP:0001635 | Congestive heart failure |
| HP:0001639 | Hypertrophic cardiomyopathy |
| HP:0001644 | Dilated cardiomyopathy |
| HP:0001653 | Mitral regurgitation |
| HP:0001663 | Ventricular fibrillation |
| HP:0001681 | Angina pectoris |
| HP:0001684 | Secundum atrial septal defect |
| HP:0001695 | Cardiac arrest |
| HP:0001708 | Right ventricular failure |
| HP:0001712 | Left ventricular hypertrophy |
| HP:0001723 | Restrictive cardiomyopathy |
| HP:0001727 | Thromboembolic stroke |
| HP:0001962 | Palpitations |
| HP:0002090 | Pneumonia |
| HP:0002092 | Pulmonary arterial hypertension |
| HP:0002094 | Dyspnea |
| HP:0002326 | Transient ischemic attack |
| HP:0002718 | Recurrent bacterial infections |
| HP:0002875 | Exertional dyspnea |
| HP:0003198 | Myopathy |
| HP:0003457 | EMG abnormality |
| HP:0003546 | Exercise intolerance |
GWAS associations
3 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST000795_1 | Refractive error | 2.000000e-14 |
| GCST002115_18 | Axial length | 4.000000e-11 |
| GCST010002_165 | Refractive error | 2.000000e-245 |
EFO canonical traits (1, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0005318 | axial length measurement |
MeSH disease descriptors (8)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D001176 | Arthrogryposis | C05.550.150; C05.651.102; C05.660.077; C16.131.621.077 |
| D009202 | Cardiomyopathies | C14.280.238 |
| D002311 | Cardiomyopathy, Dilated | C14.280.195.160; C14.280.238.070; C16.320.488.750 |
| D002312 | Cardiomyopathy, Hypertrophic | C14.280.238.100; C14.280.484.048.750.070.160 |
| D024741 | Cardiomyopathy, Hypertrophic, Familial | C14.280.238.100.500; C14.280.484.048.750.070.160.500; C16.320.160 |
| C567561 | Atrial Septal Defect 5 (supp.) | |
| C567419 | Cardiomyopathy, Familial Hypertrophic, 11 (supp.) | |
| C566171 | Cardiomyopathy, Familial Hypertrophic, 2 (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL6066852 (SINGLE PROTEIN)
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
45 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects cotreatment, decreases expression, affects expression, increases expression | 7 |
| methylmercuric chloride | increases expression, affects cotreatment, decreases expression | 4 |
| bisphenol A | decreases expression, increases expression | 2 |
| sodium arsenite | decreases expression, decreases reaction, increases expression | 2 |
| entinostat | decreases expression, affects cotreatment | 2 |
| Benzo(a)pyrene | decreases methylation, increases expression, increases methylation | 2 |
| Folic Acid | affects expression, increases expression | 2 |
| Cadmium Chloride | increases abundance, increases expression | 2 |
| p-Chloromercuribenzoic Acid | increases expression, affects cotreatment | 2 |
| 2,5,2’,5’-tetrachlorobiphenyl | increases expression | 1 |
| trichostatin A | decreases expression | 1 |
| sulforaphane | decreases expression | 1 |
| zinc chromate | decreases expression, increases abundance | 1 |
| chromium hexavalent ion | decreases expression, increases abundance | 1 |
| perfluorooctane sulfonic acid | decreases expression | 1 |
| monoisoamyl-2,3-dimercaptosuccinate | decreases expression, decreases reaction | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, decreases expression, increases expression | 1 |
| dorsomorphin | affects cotreatment, decreases expression, increases expression | 1 |
| incobotulinumtoxinA | decreases expression | 1 |
| Dasatinib | increases expression | 1 |
| Sunitinib | decreases expression | 1 |
| Air Pollutants | decreases expression, increases abundance | 1 |
| Cadmium | increases expression, increases abundance | 1 |
| Carbamazepine | affects expression | 1 |
| Carmustine | decreases expression | 1 |
| Cytarabine | decreases expression | 1 |
| Succimer | affects cotreatment, decreases expression | 1 |
| Dimethyl Sulfoxide | decreases expression, increases expression | 1 |
| Doxorubicin | affects expression | 1 |
| Enzyme Inhibitors | decreases activity, increases O-linked glycosylation | 1 |
ChEMBL screening assays
6 unique, capped per target: 6 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL5697640 | Binding | Inhibition of ACTC1 (unknown origin) assessed as fold change at 10 uM incubated for 1 hr by colloidal coomassie staining based LC-MS/MS analysis | Inhibition of BET recruitment to chromatin as an effective treatment for MLL-fusion leukaemia. — Nature |
Cellosaurus cell lines
1 cell lines: 1 induced pluripotent stem cell
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_C1SU | CBCHi001-A-1 | Induced pluripotent stem cell | Female |
Clinical trials (associated diseases)
591 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00879060 | PHASE4 | COMPLETED | Clinical and Therapeutic Implications of Fibrosis in Hypertrophic Cardiomyopathy |
| NCT01721967 | PHASE4 | COMPLETED | Ranolazine for the Treatment of Chest Pain in HCM Patients |
| NCT02948998 | PHASE4 | UNKNOWN | Evaluating the Effect of Spironolactone on Hypertrophic Cardiomyopathy |
| NCT03249272 | PHASE4 | TERMINATED | Microvascular Dysfunction in Nonischemic Cardiomyopathy: Insights From CMR Assessment of Coronary Flow Reserve |
| NCT04133532 | PHASE4 | COMPLETED | Effect of Metoprolol in Post Alcohol Septal Ablation Patients With Hypertrophic Cardiomyopathy |
| NCT06401343 | PHASE4 | RECRUITING | Use of SGLT2i in noHCM With HFpEF |
| NCT07103655 | PHASE4 | NOT_YET_RECRUITING | The Therapeutic Value of Mavacamten in Hypertrophic Cardiomyopathy With Mid-to-Apical Left Ventricular Obstruction |
| NCT07600177 | PHASE4 | RECRUITING | Mavacamten to Aficamten Transition in Patients With Obstructive Hypertrophic Cardiomyopathy |
| NCT00374465 | PHASE4 | UNKNOWN | Therapy With Verapamil or Carvedilol in Chronic Heart Failure |
| NCT01293903 | PHASE4 | COMPLETED | Study of Qiliqiangxin Capsule to Treat Dilated Cardiomyopathy |
| NCT01557140 | PHASE4 | COMPLETED | A Randomized Trial of Carvedilol in Chronic Chagas Cardiomyopathy |
| NCT01917149 | PHASE4 | COMPLETED | Supramaximal Titrated Inhibition of RAAS in Dilated Cardiomyopathy |
| NCT02115581 | PHASE4 | COMPLETED | Coenzyme Q10 Supplementation in Children With Idiopathic Dilated Cardiomyopathy |
| NCT06236022 | PHASE4 | RECRUITING | The Effects of Sirolimus in Patients With Dilated Cardiomyopathy Infected With Kaposi Sarcoma-associated Virus |
| NCT00348530 | PHASE4 | UNKNOWN | Carvedilol Versus Verapamil in Chronic Heart Failure Secondary to Non-Ischemic Cardiomyopathy |
| NCT00371891 | PHASE4 | COMPLETED | Ontario Multidetector Computed Tomographic (MDCT) Coronary Angiography Study (OMCAS) |
| NCT00401856 | PHASE4 | COMPLETED | CMR to Assess Fibrosis in Cardiomyopathy Using Eplerenone |
| NCT00559338 | PHASE4 | COMPLETED | Impact of Nesiritide Infusion for Decompensated Heart Failure in the Emergency Department |
| NCT00606775 | PHASE4 | UNKNOWN | The Preventive Efficacy of Carvedilol on Cardiac Dysfunction in Duchenne Muscular Dystrophy |
| NCT00658203 | PHASE4 | COMPLETED | Clinical Evaluation on Advanced Resynchronization |
| NCT00701220 | PHASE4 | COMPLETED | Statin Therapy for Ischemic and Nonischemic Cardiomyopathy |
| NCT00800761 | PHASE4 | COMPLETED | Intensive Combined Chelation Therapy for Iron-Induced Cardiac Disease in Patients With Thalassemia Major |
| NCT00806390 | PHASE4 | TERMINATED | Prevention of Anthracycline or Trastuzumab Induced Cardiomyopathy by Metoprolol |
| NCT01006473 | PHASE4 | COMPLETED | Exercise Training in Chagas Cardiomyopathy |
| NCT01261065 | PHASE4 | COMPLETED | Mechanisms of Improvement With Beta-Blocker Treatment in Heart Failure |
| NCT01345188 | PHASE4 | COMPLETED | Ranolazine in Ischemic Cardiomyopathy |
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Related Atlas pages
- Associated diseases: hypertrophic cardiomyopathy 11, hypertrophic cardiomyopathy, atrial septal defect 5, dilated cardiomyopathy 1R, familial isolated dilated cardiomyopathy, dilated cardiomyopathy, distal arthrogryposis, arthrogryposis syndrome, arrhythmogenic right ventricular cardiomyopathy
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): 15q14 microdeletion syndrome, arthrogryposis, arthrogryposis syndrome, atrial septal defect 5, cardiomyopathy, dilated cardiomyopathy, dilated cardiomyopathy 1A, dilated cardiomyopathy 1R, distal arthrogryposis, familial hypertrophic cardiomyopathy, hypertrophic cardiomyopathy, hypertrophic cardiomyopathy 11, hypertrophic cardiomyopathy 2, left ventricular noncompaction 1, left ventricular noncompaction 4