ACTG1
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Summary
ACTG1 (actin gamma 1, HGNC:144) is a protein-coding gene on chromosome 17q25.3, encoding Actin, cytoplasmic 2 (P63261). Actins are highly conserved proteins that are involved in various types of cell motility and are ubiquitously expressed in all eukaryotic cells. It is a selective cancer dependency (DepMap: 83.3% of cell lines).
Actins are highly conserved proteins that are involved in various types of cell motility and in maintenance of the cytoskeleton. Three main groups of actin isoforms have been identified in vertebrate animals: alpha, beta, and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exist in most cell types as components of the cytoskeleton and as mediators of internal cell motility. Actin gamma 1, encoded by this gene, is a cytoplasmic actin found in all cell types. Mutations in this gene are associated with DFNA20/26, a subtype of autosomal dominant non-syndromic sensorineural progressive hearing loss and also with Baraitser-Winter syndrome. Alternative splicing results in multiple transcript variants.
Source: NCBI Gene 71 — RefSeq curated summary.
At a glance
- Gene–disease (curated): Baraitser-winter syndrome 2 (Definitive, ClinGen) — +4 more curated relationships
- GWAS associations: 7
- Clinical variants (ClinVar): 710 total — 16 pathogenic, 33 likely-pathogenic
- Phenotypes (HPO): 76
- Cancer dependency (DepMap): dependent in 83.3% of screened cell lines
- MANE Select transcript:
NM_001614
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:144 |
| Approved symbol | ACTG1 |
| Name | actin gamma 1 |
| Location | 17q25.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Ensembl gene | ENSG00000184009 |
| Ensembl biotype | protein_coding |
| OMIM | 102560 |
| Entrez | 71 |
Gene structure
Transcript identifiers
Ensembl transcripts: 44 — 31 protein_coding, 7 nonsense_mediated_decay, 6 retained_intron
ENST00000570382, ENST00000571691, ENST00000571721, ENST00000572105, ENST00000573283, ENST00000574671, ENST00000575087, ENST00000575659, ENST00000575842, ENST00000575994, ENST00000576209, ENST00000576214, ENST00000576544, ENST00000576917, ENST00000615544, ENST00000644774, ENST00000679410, ENST00000679480, ENST00000679535, ENST00000679778, ENST00000680227, ENST00000680727, ENST00000681052, ENST00000681092, ENST00000681842, ENST00000863045, ENST00000863046, ENST00000915961, ENST00000915962, ENST00000915963, ENST00000915964, ENST00000915965, ENST00000915966, ENST00000915967, ENST00000915968, ENST00000915969, ENST00000915970, ENST00000915971, ENST00000915972, ENST00000915973, ENST00000915974, ENST00000915975, ENST00000915976, ENST00000954444
RefSeq mRNA: 2 — MANE Select: NM_001614
NM_001199954, NM_001614
CCDS: CCDS11782
Canonical transcript exons
ENST00000573283 — 6 exons
| Exon | Start | End |
|---|---|---|
| ENSE00002660192 | 81509971 | 81510833 |
| ENSE00002665639 | 81512734 | 81512799 |
| ENSE00003550950 | 81511188 | 81511626 |
| ENSE00003591451 | 81511903 | 81512142 |
| ENSE00003635001 | 81512232 | 81512360 |
| ENSE00003653583 | 81510927 | 81511108 |
Expression profiles
Bgee: expression breadth ubiquitous, 288 present calls, max score 99.98.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 4927.9052 / max 26726.1625, expressed in 1828 samples.
FANTOM5 promoters (22 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 168753 | 4832.8779 | 1828 |
| 168747 | 41.8485 | 1793 |
| 168746 | 9.9495 | 1704 |
| 168740 | 8.0135 | 1615 |
| 168734 | 6.9481 | 1552 |
| 168735 | 6.3556 | 1517 |
| 168745 | 5.5632 | 1580 |
| 168741 | 3.6143 | 1327 |
| 168736 | 2.7801 | 1247 |
| 168737 | 2.4367 | 1086 |
Top tissues by expression
288 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| ileal mucosa | UBERON:0000331 | 99.98 | gold quality |
| ventricular zone | UBERON:0003053 | 99.98 | gold quality |
| amniotic fluid | UBERON:0000173 | 99.96 | gold quality |
| embryo | UBERON:0000922 | 99.96 | gold quality |
| ganglionic eminence | UBERON:0004023 | 99.96 | gold quality |
| cortical plate | UBERON:0005343 | 99.96 | gold quality |
| dorsal root ganglion | UBERON:0000044 | 99.95 | gold quality |
| pleura | UBERON:0000977 | 99.95 | gold quality |
| epithelium of nasopharynx | UBERON:0001951 | 99.95 | gold quality |
| parietal pleura | UBERON:0002400 | 99.95 | gold quality |
| visceral pleura | UBERON:0002401 | 99.95 | gold quality |
| mucosa of urinary bladder | UBERON:0001259 | 99.94 | gold quality |
| pericardium | UBERON:0002407 | 99.94 | gold quality |
| lower lobe of lung | UBERON:0008949 | 99.94 | gold quality |
| epithelial cell of pancreas | CL:0000083 | 99.93 | gold quality |
| stromal cell of endometrium | CL:0002255 | 99.93 | gold quality |
| cardia of stomach | UBERON:0001162 | 99.93 | gold quality |
| pylorus | UBERON:0001166 | 99.93 | gold quality |
| germinal epithelium of ovary | UBERON:0001304 | 99.93 | gold quality |
| trigeminal ganglion | UBERON:0001675 | 99.93 | gold quality |
| thymus | UBERON:0002370 | 99.93 | gold quality |
| adult organism | UBERON:0007023 | 99.93 | gold quality |
| type B pancreatic cell | CL:0000169 | 99.92 | gold quality |
| mammary duct | UBERON:0001765 | 99.92 | gold quality |
| epithelium of mammary gland | UBERON:0003244 | 99.92 | gold quality |
| vena cava | UBERON:0004087 | 99.92 | gold quality |
| nasal cavity epithelium | UBERON:0005384 | 99.92 | gold quality |
| layer of synovial tissue | UBERON:0007616 | 99.92 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 99.91 | gold quality |
| colonic mucosa | UBERON:0000317 | 99.91 | gold quality |
Single-cell (SCXA)
Detected in 43 experiment(s), a significant marker in 19.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-MTAB-7051 | yes | 13973.79 |
| E-MTAB-10042 | yes | 7259.49 |
| E-CURD-77 | yes | 6772.60 |
| E-CURD-122 | yes | 6605.15 |
| E-MTAB-9221 | yes | 5469.24 |
| E-CURD-46 | yes | 4384.63 |
| E-CURD-98 | yes | 3864.90 |
| E-MTAB-9467 | yes | 3429.30 |
| E-CURD-119 | yes | 1317.83 |
| E-GEOD-131882 | yes | 1285.13 |
| E-HCAD-4 | yes | 68.51 |
| E-GEOD-137537 | yes | 45.44 |
| E-CURD-88 | yes | 32.60 |
| E-MTAB-7316 | yes | 27.31 |
| E-GEOD-135922 | yes | 25.64 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): E2F4, JUN, MYC, SRF
miRNA regulators (miRDB)
32 targeting ACTG1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4482-3P | 99.98 | 72.50 | 3147 |
| HSA-MIR-512-3P | 99.97 | 67.35 | 1049 |
| HSA-MIR-545-3P | 99.95 | 70.74 | 2783 |
| HSA-MIR-5195-3P | 99.92 | 70.92 | 1877 |
| HSA-MIR-145-5P | 99.92 | 71.13 | 1836 |
| HSA-MIR-4731-5P | 99.89 | 67.23 | 2537 |
| HSA-MIR-6515-3P | 99.82 | 68.19 | 1933 |
| HSA-MIR-8080 | 99.82 | 67.52 | 1342 |
| HSA-MIR-1825 | 99.72 | 68.11 | 1089 |
| HSA-MIR-7156-5P | 99.64 | 68.81 | 1369 |
| HSA-MIR-26A-1-3P | 99.64 | 66.81 | 788 |
| HSA-MIR-26A-2-3P | 99.64 | 66.82 | 786 |
| HSA-MIR-3975 | 99.62 | 65.97 | 697 |
| HSA-MIR-190A-5P | 99.54 | 71.45 | 933 |
| HSA-MIR-190B-5P | 99.54 | 71.40 | 925 |
| HSA-MIR-4273 | 99.45 | 67.93 | 1206 |
| HSA-MIR-888-5P | 99.30 | 70.15 | 1855 |
| HSA-MIR-449B-3P | 99.20 | 67.24 | 1047 |
| HSA-MIR-7151-3P | 99.04 | 69.72 | 2370 |
| HSA-MIR-3190-5P | 98.87 | 64.89 | 1345 |
| HSA-MIR-936 | 98.87 | 70.51 | 1124 |
| HSA-MIR-5006-5P | 98.79 | 66.92 | 1246 |
| HSA-MIR-7158-3P | 98.46 | 66.45 | 728 |
| HSA-MIR-624-3P | 98.37 | 67.06 | 1067 |
| HSA-MIR-561-5P | 98.25 | 68.13 | 1365 |
| HSA-MIR-203B-3P | 97.82 | 66.27 | 979 |
| HSA-MIR-144-5P | 97.66 | 69.90 | 531 |
| HSA-MIR-1202 | 97.19 | 66.43 | 827 |
| HSA-MIR-3972 | 97.19 | 66.46 | 808 |
| HSA-MIR-3194-5P | 96.80 | 64.90 | 1027 |
Functional genomics
DepMap (CRISPR cell-line fitness): dependent in 83.3% of screened cell lines.
Literature-anchored findings (GeneRIF, showing 40)
- RNA polymerase II accumulates in the promoter-proximal region of the dihydrofolate reductase and gamma-actin genes. (PMID:12612070)
- the first description of a mutation in cytoskeletal, or nonmuscle, actin; with an autosomal dominant, progressive, sensorineural hearing loss phenotype (PMID:13680526)
- A missense mutation in the gamma actin 1 gene causes autosomal dominant hearing loss. (PMID:14684684)
- Our data are consistent with the idea that DP assembles into nascent junctions from both diffusible and particulate pools in a temporally overlapping series of events triggered by cell-cell contact and regulated by actin and DP-IF interactions. (PMID:16365169)
- Espins do not activate the Arp2/3 complex in vitro, and bundle assembly is not indicative of in-vitro nucleation activity.Our results suggest a novel way to build actin bundles at specific sites in cells. (PMID:16569662)
- A major factor in the deafness caused by gamma-actin mutations is an altered ability of the actin filaments to be properly regulated by actin-binding proteins rather than an inability to polymerize. (PMID:16690605)
- the present results do not indicate that mutations in ACTG1 are a frequent cause of autosomal-dominant postlingual sensorineural hearing impairment in Norway nor Denmark. (PMID:16773128)
- actin and vimentin filaments can interact directly through the tail domain of vimentin (PMID:16901892)
- During cell membrane blebbing actin recruitment is involved in cortex assembly. (PMID:17088428)
- In both AA and AL renal amyloidosis groups there were significant positive correlations between immunostaining of TGFbeta-1 and alpha-SMA. (PMID:17285762)
- IQGAP1 regulates Salmonella invasion through interactions with actin, Rac1, and Cdc42 (PMID:17693642)
- In this report we have used mutagenesis of the Talin1 I/LWEQ module to show that the amino acids responsible for dimerization are necessary for F-actin binding, stabilization and cross-linking of actin filaments, and focal adhesion targeting. (PMID:17722883)
- analysis of the structural basis of profilin-actin complexes during filament elongation by Ena/VASP (PMID:17914456)
- In this study, a novel missense mutation (c.364A>G; p.I122V) co-segregated with the affected individuals in the family and did not exist in the unaffected family members and 150 unrelated normal controls. (PMID:18804074)
- Both RPEL peptides of the MAL protein bind to the G-actin hydrophobic cleft and to subdomain 3. (PMID:19008859)
- This protein has been found differentially expressed in the dorsolateral prefrontal cortex from patients with schizophrenia. (PMID:19110265)
- Two novel ACTG1 missense mutations are associated with DFNA20/26 hearing impairment. (PMID:19477959)
- audiometric phenotype of the Dutch DFNA20/26 family with a novel mutation in ACTG1 was largely consistent with previous reports on DFNA20/26. All suffered from hearing loss.This is the first known DFNA20/26 family that has experienced tinnitus. (PMID:19548389)
- These results reveal new aspects of beta- and gamma-actin organization that support their functional diversity. (PMID:19638415)
- This protein has been found differentially expressed in the anterior cingulate cortex from patients with schizophrenia (PMID:20381070)
- actin participates in transcription elongation by recruiting Cdk9,a catalytic subunit of P-TEFb, for phosphorylation of the Pol II C-terminal domain, and the actin-Cdk9 interaction promotes chromatin remodeling (PMID:21378166)
- Cytoplasmic G-actin concentration is a critical parameter for determining the extent of stimulus-induced G-actin assembly and cell extension. (PMID:21502360)
- knockdown of gamma-actin significantly reduced speed of motility and severely affected the cell’s ability to explore, which was, in part, due to a loss of cell polarity (PMID:21908715)
- identified de novo missense changes in the cytoplasmic actin-encoding genes ACTB and ACTG1 in one and two probands, respectively; suggest that Baraitser-Winter syndrome is the predominant phenotype associated with mutation of these two genes (PMID:22366783)
- These results showed the biphasic F-actin dynamics in herpes simplex virus 1 neuronal infection and confirmed the association of F-actin with the changes in the expression and activity of cofilin 1. (PMID:22623803)
- Data indicate beta-cytoplasmic (beta-CYA) and gamma-cytoplasmic (gamma-CYA) actins differential localization and dynamics at epithelial junctions. (PMID:22855531)
- the novel variant p.M305T in ACTG1 (DFNA20/26) was selected as a disease-causing variant. (PMID:23506231)
- Mutations in ACTB cause a distinctly more severe phenotype than ACTG1 mutations in Baraitser-Winter syndrome. (PMID:23756437)
- The data, for the first time, link ASAP3 with ACTG1 in the regulation of cytoskeletal maintenance and cell motility (PMID:24284654)
- The actin/MKL1 signalling pathway influences cell growth and gene expression through large-scale chromatin reorganization and histone post-translational modifications. (PMID:24762104)
- In this study we sought to clarify the detailed mutational spectrum, clinical features, and genotype-phenotype correlations for ACTG1 gene associated autosomal dominant sensorineural hearing loss (PMID:25792668)
- Three unrelated cases of rare ACTG1 variants in fetal microlissencephaly have been described. (PMID:26188271)
- Data indicate that F-actin is significantly elevated in septic shock, and F-actin and the F:G-actin ratio are potential biomarkers for the diagnosis of septic shock. (PMID:26754286)
- a novel mutation in ACTG1 was found to be co-segregated with hearing loss and the genetic cause of autosomal dominant nonsyndromic hearing impairment in a Chinese family (PMID:26832775)
- We have identified a three-generation pedigree segregating a novel mutation in the ACTG1 gene that causes Baraitser-Winter Syndrome with extremely variable expressivity, leading to an initial diagnosis of isolated AD hearing loss in two members. (PMID:27096712)
- we expand the clinical spectrum of the ACTG1-associated Baraitser-Winter cerebrofrontofacial syndrome demonstrating the mild end of the facial and brain manifestations. (PMID:27240540)
- Baraitser-Winter cerebrofrontofacial syndrome is caused by missense mutations in the cytoplasmic beta- and gamma-actin genes ACTB and ACTG1. We provide an overview of the clinical characteristics (including some novel findings in four recently diagnosed patients), diagnosis, management, mutation spectrum and genetic counselling. (PMID:27625340)
- Data reports a recurrent de novo mutation in ACTG1 causes isolated ocular coloboma (PMID:28493397)
- Results identified ACTG1 with significant high expression in skin cancer tissue and suggested that ACTG1 can regulate the cell proliferation and migration through ROCK signaling pathway. (PMID:28727228)
- A novel actin gamma 1 (ACTG1) de novo mutation is identified in two sporadic, juvenile, Chinese non-syndromic hearing loss (NSHL) cases using targeted high-throughput sequencing. (PMID:29357087)
Cross-species orthologs
4 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | actb1 | ENSDARG00000037746 |
| danio_rerio | actb2 | ENSDARG00000037870 |
| mus_musculus | Actg1 | ENSMUSG00000062825 |
| rattus_norvegicus | Actg1l1 | ENSRNOG00000053452 |
Paralogs (26): ACTR6 (ENSG00000075089), ACTB (ENSG00000075624), ACTL6B (ENSG00000077080), ACTR5 (ENSG00000101442), ACTR3C (ENSG00000106526), ACTA2 (ENSG00000107796), ACTR8 (ENSG00000113812), ACTR1B (ENSG00000115073), ACTR3 (ENSG00000115091), ACTL8 (ENSG00000117148), ACTRT1 (ENSG00000123165), ACTR10 (ENSG00000131966), ACTR3B (ENSG00000133627), ACTL6A (ENSG00000136518), ACTR2 (ENSG00000138071), ACTR1A (ENSG00000138107), ACTA1 (ENSG00000143632), ACTL7B (ENSG00000148156), ACTC1 (ENSG00000159251), ACTG2 (ENSG00000163017), ACTBL2 (ENSG00000169067), ACTRT2 (ENSG00000169717), ACTL9 (ENSG00000181786), ACTRT3 (ENSG00000184378), ACTL7A (ENSG00000187003), ACTL10 (ENSG00000288649)
Protein
Protein identifiers
Actin, cytoplasmic 2 — P63261 (reviewed: P63261)
Alternative names: Gamma-actin
All UniProt accessions (9): A0A7P0TBL1, A0A804GS07, P63261, I3L1U9, I3L3I0, I3L3R2, I3L4N8, J3KT65, K7EM38
UniProt curated annotations — full annotation on UniProt →
Function. Actins are highly conserved proteins that are involved in various types of cell motility and are ubiquitously expressed in all eukaryotic cells. May play a role in the repair of noise-induced stereocilia gaps thereby maintains hearing sensitivity following loud noise damage.
Subunit / interactions. Polymerization of globular actin (G-actin) leads to a structural filament (F-actin) in the form of a two-stranded helix. Each actin can bind to 4 others. Interacts with TWF1, CAPZB, cofilin and profilin.
Subcellular location. Cytoplasm. Cytoskeleton.
Post-translational modifications. Oxidation of Met-44 and Met-47 by MICALs (MICAL1, MICAL2 or MICAL3) to form methionine sulfoxide promotes actin filament depolymerization. MICAL1 and MICAL2 produce the (R)-S-oxide form. The (R)-S-oxide form is reverted by MSRB1 and MSRB2, which promote actin repolymerization. Monomethylation at Lys-84 (K84me1) regulates actin-myosin interaction and actomyosin-dependent processes. Demethylation by ALKBH4 is required for maintaining actomyosin dynamics supporting normal cleavage furrow ingression during cytokinesis and cell migration. N-terminal cleavage of acetylated methionine of immature cytoplasmic actin by ACTMAP. N-terminal acetylation by NAA80 affects actin filament depolymerization and elongation, including elongation driven by formins. In contrast, filament nucleation by the Arp2/3 complex is not affected. Methylated at His-73 by SETD3. (Microbial infection) Monomeric actin is cross-linked by V.cholerae toxins RtxA and VgrG1 in case of infection: bacterial toxins mediate the cross-link between Lys-50 of one monomer and Glu-270 of another actin monomer, resulting in formation of highly toxic actin oligomers that cause cell rounding. The toxin can be highly efficient at very low concentrations by acting on formin homology family proteins: toxic actin oligomers bind with high affinity to formins and adversely affect both nucleation and elongation abilities of formins, causing their potent inhibition in both profilin-dependent and independent manners.
Disease relevance. Deafness, autosomal dominant, 20 (DFNA20) [MIM:604717] A form of non-syndromic sensorineural hearing loss. Sensorineural deafness results from damage to the neural receptors of the inner ear, the nerve pathways to the brain, or the area of the brain that receives sound information. The disease is caused by variants affecting the gene represented in this entry. Baraitser-Winter syndrome 2 (BRWS2) [MIM:614583] A rare developmental disorder characterized by the combination of congenital ptosis, high-arched eyebrows, hypertelorism, ocular colobomata, and a brain malformation consisting of anterior-predominant lissencephaly. Other typical features include postnatal short stature and microcephaly, intellectual disability, seizures, and hearing loss. The disease is caused by variants affecting the gene represented in this entry. Defects in ACTG1 has been found in a patient with isolated coloboma, a defect of the eye characterized by the absence of ocular structures due to abnormal morphogenesis of the optic cup and stalk, and the fusion of the fetal fissure (optic fissure). Isolated colobomas may be associated with an abnormally small eye (microphthalmia) or small cornea.
Miscellaneous. In vertebrates 3 main groups of actin isoforms, alpha, beta and gamma have been identified. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins coexist in most cell types as components of the cytoskeleton and as mediators of internal cell motility.
Similarity. Belongs to the actin family.
RefSeq proteins (2): NP_001186883, NP_001605* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR004000 | Actin | Family |
| IPR004001 | Actin_CS | Conserved_site |
| IPR020902 | Actin/actin-like_CS | Conserved_site |
| IPR043129 | ATPase_NBD | Homologous_superfamily |
Pfam: PF00022
Catalyzed reactions (Rhea), 1 shown:
- ATP + H2O = ADP + phosphate + H(+) (RHEA:13065)
UniProt features (72 total): helix 20, sequence variant 19, strand 17, modified residue 6, turn 4, chain 2, cross-link 2, initiator methionine 1, sequence conflict 1
Structure
Experimental structures (PDB)
10 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 6WK2 | X-RAY DIFFRACTION | 1.76 |
| 6WK1 | X-RAY DIFFRACTION | 1.89 |
| 6V63 | X-RAY DIFFRACTION | 2.02 |
| 6V62 | X-RAY DIFFRACTION | 2.36 |
| 7NVM | ELECTRON MICROSCOPY | 3.1 |
| 8DNF | ELECTRON MICROSCOPY | 3.38 |
| 5JLH | ELECTRON MICROSCOPY | 3.9 |
| 6G2T | ELECTRON MICROSCOPY | 9 |
| 6CXI | ELECTRON MICROSCOPY | 11 |
| 6CXJ | ELECTRON MICROSCOPY | 11 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P63261-F1 | 95.44 | 0.93 |
Antibody-complex structures (SAbDab): 1 — 7NVM
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (8): 270, 1, 2, 44, 47, 73, 84, 50
Function
Pathways and Gene Ontology
Reactome pathways
69 pathways
| ID | Pathway |
|---|---|
| R-HSA-1445148 | Translocation of SLC2A4 (GLUT4) to the plasma membrane |
| R-HSA-190873 | Gap junction degradation |
| R-HSA-196025 | Formation of annular gap junctions |
| R-HSA-2029482 | Regulation of actin dynamics for phagocytic cup formation |
| R-HSA-3928662 | EPHB-mediated forward signaling |
| R-HSA-3928665 | EPH-ephrin mediated repulsion of cells |
| R-HSA-418990 | Adherens junctions interactions |
| R-HSA-437239 | Recycling pathway of L1 |
| R-HSA-4420097 | VEGFA-VEGFR2 Pathway |
| R-HSA-445095 | Interaction between L1 and Ankyrins |
| R-HSA-446353 | Cell-extracellular matrix interactions |
| R-HSA-5626467 | RHO GTPases activate IQGAPs |
| R-HSA-5663213 | RHO GTPases Activate WASPs and WAVEs |
| R-HSA-5663220 | RHO GTPases Activate Formins |
| R-HSA-5674135 | MAP2K and MAPK activation |
| R-HSA-6802946 | Signaling by moderate kinase activity BRAF mutants |
| R-HSA-6802948 | Signaling by high-kinase activity BRAF mutants |
| R-HSA-6802952 | Signaling by BRAF and RAF1 fusions |
| R-HSA-6802955 | Paradoxical activation of RAF signaling by kinase inactive BRAF |
| R-HSA-8856828 | Clathrin-mediated endocytosis |
| R-HSA-9013418 | RHOBTB2 GTPase cycle |
| R-HSA-9649948 | Signaling downstream of RAS mutants |
| R-HSA-9656223 | Signaling by RAF1 mutants |
| R-HSA-9662360 | Sensory processing of sound by inner hair cells of the cochlea |
| R-HSA-9662361 | Sensory processing of sound by outer hair cells of the cochlea |
| R-HSA-9664422 | FCGR3A-mediated phagocytosis |
| R-HSA-9764561 | Regulation of CDH1 Function |
| R-HSA-9913351 | Formation of the dystrophin-glycoprotein complex (DGC) |
| R-HSA-9953170 | GBP-mediated host defense |
| R-HSA-9958825 | Activation of STAT3 by cadherin engagement |
MSigDB gene sets: 670 (showing top):
GOBP_MORPHOGENESIS_OF_AN_EPITHELIUM, GOBP_EPITHELIUM_DEVELOPMENT, GOBP_ACTIN_FILAMENT_BUNDLE_ORGANIZATION, REACTOME_INNATE_IMMUNE_SYSTEM, GOBP_REGULATION_OF_WOUND_HEALING, REACTOME_CYTOKINE_SIGNALING_IN_IMMUNE_SYSTEM, GOBP_RESPONSE_TO_PEPTIDE, GOBP_PLATELET_ACTIVATION, GCM_NPM1, MORF_UBE2I, GOBP_FOCAL_ADHESION_ASSEMBLY, GOBP_STRIATED_MUSCLE_CELL_DIFFERENTIATION, ACEVEDO_NORMAL_TISSUE_ADJACENT_TO_LIVER_TUMOR_DN, HSIAO_HOUSEKEEPING_GENES, GOBP_NEUROGENESIS
GO Biological Process (18): angiogenesis (GO:0001525), morphogenesis of a polarized epithelium (GO:0001738), axonogenesis (GO:0007409), positive regulation of gene expression (GO:0010628), positive regulation of cell migration (GO:0030335), maintenance of blood-brain barrier (GO:0035633), sarcomere organization (GO:0045214), cell motility (GO:0048870), regulation of stress fiber assembly (GO:0051492), regulation of focal adhesion assembly (GO:0051893), platelet aggregation (GO:0070527), cellular response to type II interferon (GO:0071346), positive regulation of wound healing (GO:0090303), tight junction assembly (GO:0120192), regulation of transepithelial transport (GO:0150111), regulation of synaptic vesicle endocytosis (GO:1900242), protein localization to bicellular tight junction (GO:1902396), postsynaptic actin cytoskeleton organization (GO:0098974)
GO Molecular Function (10): structural constituent of cytoskeleton (GO:0005200), profilin binding (GO:0005522), ATP binding (GO:0005524), hydrolase activity (GO:0016787), protein kinase binding (GO:0019901), ubiquitin protein ligase binding (GO:0031625), identical protein binding (GO:0042802), structural constituent of postsynaptic actin cytoskeleton (GO:0098973), nucleotide binding (GO:0000166), protein binding (GO:0005515)
GO Cellular Component (25): obsolete extracellular space (GO:0005615), nucleus (GO:0005634), cytoplasm (GO:0005737), cytosol (GO:0005829), cytoskeleton (GO:0005856), actin filament (GO:0005884), plasma membrane (GO:0005886), cell-cell junction (GO:0005911), focal adhesion (GO:0005925), actin cytoskeleton (GO:0015629), membrane (GO:0016020), myofibril (GO:0030016), axon (GO:0030424), filamentous actin (GO:0031941), NuA4 histone acetyltransferase complex (GO:0035267), apical junction complex (GO:0043296), calyx of Held (GO:0044305), synapse (GO:0045202), phagocytic vesicle (GO:0045335), extracellular exosome (GO:0070062), blood microparticle (GO:0072562), dense body (GO:0097433), Schaffer collateral - CA1 synapse (GO:0098685), basal body patch (GO:0120220), apical part of cell (GO:0045177)
Reactome top-level categories
Rollup of top-12 pathways:
| Category | Pathways |
|---|---|
| Oncogenic MAPK signaling | 4 |
| RHO GTPase Effectors | 3 |
| Membrane Trafficking | 2 |
| EPH-Ephrin signaling | 2 |
| L1CAM interactions | 2 |
| Gap junction trafficking | 1 |
| Gap junction degradation | 1 |
| Fcgamma receptor (FCGR) dependent phagocytosis | 1 |
| Cell-cell junction organization | 1 |
| Signaling by VEGF | 1 |
| Cell junction organization | 1 |
| RAF/MAP kinase cascade | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 3 |
| cytoskeleton | 2 |
| protein binding | 2 |
| blood vessel morphogenesis | 1 |
| anatomical structure formation involved in morphogenesis | 1 |
| morphogenesis of an epithelium | 1 |
| cell morphogenesis involved in neuron differentiation | 1 |
| neuron projection morphogenesis | 1 |
| axon development | 1 |
| gene expression | 1 |
| regulation of gene expression | 1 |
| positive regulation of macromolecule biosynthetic process | 1 |
| cell migration | 1 |
| regulation of cell migration | 1 |
| positive regulation of cell motility | 1 |
| tissue homeostasis | 1 |
| myofibril assembly | 1 |
| actomyosin structure organization | 1 |
| cellular process | 1 |
| regulation of actin filament bundle assembly | 1 |
| stress fiber assembly | 1 |
| regulation of actomyosin structure organization | 1 |
| regulation of cell-matrix adhesion | 1 |
| focal adhesion assembly | 1 |
| regulation of cell-substrate junction assembly | 1 |
| platelet activation | 1 |
| homotypic cell-cell adhesion | 1 |
| response to type II interferon | 1 |
| cellular response to cytokine stimulus | 1 |
| wound healing | 1 |
| regulation of wound healing | 1 |
| positive regulation of response to wounding | 1 |
| cell-cell junction assembly | 1 |
| tight junction organization | 1 |
| regulation of transport | 1 |
| transepithelial transport | 1 |
| regulation of endocytosis | 1 |
| synaptic vesicle endocytosis | 1 |
| regulation of synaptic vesicle recycling | 1 |
| protein localization to cell-cell junction | 1 |
Protein interactions and networks
STRING
0 interactions, top by confidence (×1000):
IntAct
307 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| IKBKG | IKBKB | psi-mi:“MI:0914”(association) | 0.980 |
| ACTG1 | ACTB | psi-mi:“MI:0915”(physical association) | 0.950 |
| ACTB | ACTG1 | psi-mi:“MI:0915”(physical association) | 0.950 |
| CAP2 | ACTG1 | psi-mi:“MI:0915”(physical association) | 0.860 |
| ACTG1 | CAP2 | psi-mi:“MI:0915”(physical association) | 0.860 |
| ACTG1 | CFL2 | psi-mi:“MI:0915”(physical association) | 0.850 |
| CFL1 | ACTG1 | psi-mi:“MI:0915”(physical association) | 0.830 |
| ACTG1 | CFL1 | psi-mi:“MI:0915”(physical association) | 0.830 |
BioGRID (710): ACTG1 (Two-hybrid), ACTG1 (Two-hybrid), CFL1 (Two-hybrid), CFL2 (Two-hybrid), EHHADH (Two-hybrid), CAP2 (Two-hybrid), DSTN (Two-hybrid), CCDC22 (Two-hybrid), WDYHV1 (Two-hybrid), ACTG1 (Affinity Capture-MS), ACTG1 (Affinity Capture-MS), ACTG1 (Affinity Capture-MS), ACTG1 (Affinity Capture-MS), ACTG1 (Affinity Capture-MS), ACTG1 (Affinity Capture-MS)
ESM2 similar proteins: A2BDB0, O18499, O18500, O18840, O42161, O93400, P04829, P10984, P10986, P15475, P41340, P48975, P53478, P53485, P53505, P53506, P60706, P60707, P60708, P60709, P60710, P60711, P60712, P60713, P63256, P63257, P63258, P63259, P63260, P63261, P68142, P68143, P83750, P83751, Q25010, Q4L0Y2, Q4R561, Q5JAK2, Q5R1X3, Q5R6G0
Diamond homologs: A0A1L8EV45, A2BDB0, A2X6S3, O16808, O17320, O18840, O73723, P02576, P02578, P04752, P04829, P07829, P0DM41, P0DM42, P10984, P10986, P10988, P10990, P12716, P13363, P17126, P17128, P22132, P26183, P27131, P30162, P30163, P32390, P32392, P35432, P41112, P41339, P42528, P43239, P45886, P47117, P53458, P53461, P53468, P53470
SIGNOR signaling
2 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| ACTG1 | “up-regulates quantity” | F-actin_assembly | binding |
| PTPN6 | down-regulates | ACTG1 | dephosphorylation |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 119 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Turbulent (oscillatory, disturbed) flow shear stress activates signaling by PIEZO1 and integrins in endothelial cells | 6 | 27.1× | 5e-05 |
| Regulation of TNFR1 signaling | 5 | 14.2× | 2e-03 |
| PKR-mediated signaling | 7 | 12.5× | 2e-04 |
| Toll Like Receptor 3 (TLR3) Cascade | 5 | 12.2× | 3e-03 |
| TRIF (TICAM1)-mediated TLR4 signaling | 5 | 12.1× | 3e-03 |
| MyD88-independent TLR4 cascade | 5 | 11.7× | 3e-03 |
| VEGFA-VEGFR2 Pathway | 5 | 8.8× | 7e-03 |
| Toll Like Receptor 4 (TLR4) Cascade | 5 | 8.3× | 8e-03 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| platelet aggregation | 7 | 24.6× | 1e-05 |
| canonical NF-kappaB signal transduction | 6 | 22.9× | 1e-04 |
| tumor necrosis factor-mediated signaling pathway | 5 | 17.2× | 1e-03 |
| negative regulation of translation | 6 | 12.2× | 1e-03 |
| obsolete positive regulation of NF-kappaB transcription factor activity | 5 | 10.7× | 5e-03 |
| actin filament organization | 8 | 9.9× | 2e-04 |
| response to virus | 6 | 9.0× | 4e-03 |
| positive regulation of canonical NF-kappaB signal transduction | 10 | 7.6× | 2e-04 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
710 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 16 |
| Likely pathogenic | 33 |
| Uncertain significance | 178 |
| Likely benign | 320 |
| Benign | 59 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1065444 | NM_001614.5(ACTG1):c.209C>T (p.Pro70Leu) | Pathogenic |
| 1483014 | NM_001614.5(ACTG1):c.1013C>G (p.Ser338Trp) | Pathogenic |
| 18317 | NM_001614.5(ACTG1):c.994C>G (p.Pro332Ala) | Pathogenic |
| 18318 | NM_001614.5(ACTG1):c.791C>T (p.Pro264Leu) | Pathogenic |
| 18320 | NM_001614.5(ACTG1):c.1109T>C (p.Val370Ala) | Pathogenic |
| 18321 | NM_001614.5(ACTG1):c.354G>C (p.Lys118Asn) | Pathogenic |
| 29585 | NM_001614.5(ACTG1):c.464C>T (p.Ser155Phe) | Pathogenic |
| 29588 | NM_001614.5(ACTG1):c.608C>A (p.Thr203Lys) | Pathogenic |
| 29590 | NM_001614.5(ACTG1):c.766C>T (p.Arg256Trp) | Pathogenic |
| 3906505 | NM_001614.5(ACTG1):c.1004G>T (p.Arg335Leu) | Pathogenic |
| 4076592 | NM_001614.5(ACTG1):c.77C>G (p.Ala26Gly) | Pathogenic |
| 444419 | NM_001614.5(ACTG1):c.767G>A (p.Arg256Gln) | Pathogenic |
| 505063 | NM_001614.5(ACTG1):c.548G>A (p.Arg183Gln) | Pathogenic |
| 561398 | NM_001614.5(ACTG1):c.277G>A (p.Glu93Lys) | Pathogenic |
| 813525 | NM_001614.5(ACTG1):c.628C>T (p.Arg210Cys) | Pathogenic |
| 871523 | NM_001614.5(ACTG1):c.354G>T (p.Lys118Asn) | Pathogenic |
| 1012294 | NM_001614.5(ACTG1):c.439C>T (p.Arg147Cys) | Likely pathogenic |
| 1174523 | NM_001614.5(ACTG1):c.440G>A (p.Arg147His) | Likely pathogenic |
| 1216911 | NM_001614.5(ACTG1):c.761_781dup (p.Arg254_Ala260dup) | Likely pathogenic |
| 128266 | NM_001614.5(ACTG1):c.598T>A (p.Phe200Ile) | Likely pathogenic |
| 1306975 | NM_001614.5(ACTG1):c.77C>T (p.Ala26Val) | Likely pathogenic |
| 1333817 | NM_001614.5(ACTG1):c.459G>A (p.Met153Ile) | Likely pathogenic |
| 1526065 | NM_001614.5(ACTG1):c.848T>C (p.Met283Thr) | Likely pathogenic |
| 1685234 | NM_001614.5(ACTG1):c.434C>T (p.Ser145Phe) | Likely pathogenic |
| 1687657 | NM_001614.5(ACTG1):c.824A>T (p.His275Leu) | Likely pathogenic |
| 1806648 | NM_001614.5(ACTG1):c.424C>G (p.Leu142Val) | Likely pathogenic |
| 18315 | NM_001614.5(ACTG1):c.266C>T (p.Thr89Ile) | Likely pathogenic |
| 1994494 | NM_001614.5(ACTG1):c.431C>T (p.Ala144Val) | Likely pathogenic |
| 2003119 | NM_001614.5(ACTG1):c.188G>C (p.Gly63Ala) | Likely pathogenic |
| 279955 | NM_001614.5(ACTG1):c.131T>A (p.Met44Lys) | Likely pathogenic |
SpliceAI
573 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 17:81510830:TGAT:T | acceptor_gain | 1.0000 |
| 17:81510833:TC:T | acceptor_loss | 1.0000 |
| 17:81510834:C:CC | acceptor_gain | 1.0000 |
| 17:81510922:CTCA:C | donor_loss | 1.0000 |
| 17:81510924:CAC:C | donor_loss | 1.0000 |
| 17:81510925:A:AC | donor_gain | 1.0000 |
| 17:81510925:AC:A | donor_gain | 1.0000 |
| 17:81510926:C:CT | donor_gain | 1.0000 |
| 17:81510926:CC:C | donor_gain | 1.0000 |
| 17:81510926:CCT:C | donor_gain | 1.0000 |
| 17:81510926:CCTT:C | donor_gain | 1.0000 |
| 17:81510926:CCTTG:C | donor_gain | 1.0000 |
| 17:81511104:CATAC:C | acceptor_gain | 1.0000 |
| 17:81511106:TAC:T | acceptor_gain | 1.0000 |
| 17:81511106:TACCT:T | acceptor_loss | 1.0000 |
| 17:81511107:ACCT:A | acceptor_loss | 1.0000 |
| 17:81511108:CCTAG:C | acceptor_loss | 1.0000 |
| 17:81511109:C:CC | acceptor_gain | 1.0000 |
| 17:81511109:CTAGG:C | acceptor_loss | 1.0000 |
| 17:81511110:T:A | acceptor_loss | 1.0000 |
| 17:81511183:CCTA:C | donor_loss | 1.0000 |
| 17:81511184:CTAC:C | donor_loss | 1.0000 |
| 17:81511186:A:AC | donor_gain | 1.0000 |
| 17:81511186:AC:A | donor_gain | 1.0000 |
| 17:81511186:ACCC:A | donor_loss | 1.0000 |
| 17:81511187:C:CC | donor_gain | 1.0000 |
| 17:81511187:CC:C | donor_gain | 1.0000 |
| 17:81511622:ATAAT:A | acceptor_gain | 1.0000 |
| 17:81511623:TAAT:T | acceptor_gain | 1.0000 |
| 17:81511625:AT:A | acceptor_gain | 1.0000 |
AlphaMissense
0 scored. Top likely-pathogenic:
dbSNP variants (sampled 300 via entrez): RS1000831815 (17:81509615 T>C), RS1002750518 (17:81509732 C>A,G,T), RS1003346431 (17:81512632 G>A,C), RS1003424093 (17:81513590 G>A,C,T), RS1004415347 (17:81509885 G>A,C,T), RS1004634765 (17:81509489 G>A,C), RS1006973361 (17:81513240 C>G,T), RS1007192227 (17:81512522 C>G,T), RS1007269858 (17:81513376 G>A), RS1007863927 (17:81514203 C>A,T), RS1009314625 (17:81512607 C>G,T), RS1011663324 (17:81513543 C>T), RS1011779186 (17:81513397 G>A,C,T), RS1013119311 (17:81513781 C>A,T), RS1013784921 (17:81509620 C>A)
Disease associations
OMIM: gene MIM:102560 | disease phenotypes: MIM:614583, MIM:604717, MIM:610805, MIM:607432, MIM:243310
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| Baraitser-winter syndrome 2 | Definitive | Autosomal dominant |
| nonsyndromic genetic hearing loss | Definitive | Autosomal dominant |
| autosomal dominant nonsyndromic hearing loss 20 | Strong | Autosomal dominant |
| Baraitser-Winter cerebrofrontofacial syndrome | Supportive | Autosomal dominant |
| autosomal dominant nonsyndromic hearing loss | Supportive | Autosomal dominant |
ClinGen Gene-Disease Validity (2)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| Baraitser-winter syndrome 2 | Definitive | AD |
| nonsyndromic genetic hearing loss | Definitive | AD |
Mondo (11): Baraitser-winter syndrome 2 (MONDO:0013812), autosomal dominant nonsyndromic hearing loss 20 (MONDO:0011480), hearing loss disorder (MONDO:0005365), nonsyndromic genetic hearing loss (MONDO:0019497), congenital anomaly of kidney and urinary tract (MONDO:0019719), lissencephaly spectrum disorders (MONDO:0018838), Baraitser-Winter syndrome 1 (MONDO:0009470), intellectual disability (MONDO:0001071), Baraitser-Winter cerebrofrontofacial syndrome (MONDO:0017579), microcephaly (MONDO:0001149), autosomal dominant nonsyndromic hearing loss (MONDO:0019587)
Orphanet (8): Baraitser-Winter cerebrofrontofacial syndrome (Orphanet:2995), Rare autosomal dominant non-syndromic sensorineural deafness type DFNA (Orphanet:90635), Rare non-syndromic genetic deafness (Orphanet:87884), Rare genetic deafness (Orphanet:96210), Renal or urinary tract malformation (Orphanet:93545), Lissencephaly (Orphanet:48471), Short stature-intellectual disability-eye anomalies-cleft lip/palate syndrome (Orphanet:2649), NON RARE IN EUROPE: Unexplained intellectual disability (Orphanet:319658)
HPO phenotypes
76 total (30 of 76 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000072 | Hydroureter |
| HP:0000126 | Hydronephrosis |
| HP:0000154 | Wide mouth |
| HP:0000202 | Orofacial cleft |
| HP:0000219 | Thin upper lip vermilion |
| HP:0000233 | Thin vermilion border |
| HP:0000239 | Large fontanelles |
| HP:0000243 | Trigonocephaly |
| HP:0000252 | Microcephaly |
| HP:0000270 | Delayed cranial suture closure |
| HP:0000278 | Retrognathia |
| HP:0000280 | Coarse facial features |
| HP:0000286 | Epicanthus |
| HP:0000293 | Full cheeks |
| HP:0000307 | Pointed chin |
| HP:0000316 | Hypertelorism |
| HP:0000343 | Long philtrum |
| HP:0000347 | Micrognathia |
| HP:0000365 | Hearing impairment |
| HP:0000377 | Abnormal pinna morphology |
| HP:0000408 | Progressive sensorineural hearing impairment |
| HP:0000431 | Wide nasal bridge |
| HP:0000437 | Depressed nasal tip |
| HP:0000445 | Wide nose |
| HP:0000448 | Prominent nose |
| HP:0000465 | Webbed neck |
| HP:0000470 | Short neck |
| HP:0000482 | Microcornea |
| HP:0000494 | Downslanted palpebral fissures |
GWAS associations
7 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST005235_15 | Hand grip strength | 1.000000e-08 |
| GCST010002_133 | Refractive error | 2.000000e-50 |
| GCST011349_27 | Gamma glutamyl transferase levels | 2.000000e-10 |
| GCST011352_6 | Alanine aminotransferase levels | 4.000000e-10 |
| GCST90011898_59 | Alanine aminotransferase levels | 7.000000e-25 |
| GCST90013405_145 | Liver enzyme levels (alanine transaminase) | 1.000000e-32 |
| GCST90013407_27 | Liver enzyme levels (gamma-glutamyl transferase) | 5.000000e-83 |
EFO canonical traits (2, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0006941 | grip strength measurement |
| EFO:0004532 | serum gamma-glutamyl transferase measurement |
MeSH disease descriptors (7)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D034381 | Hearing Loss | C09.218.458.341; C10.597.751.418.341; C23.888.592.763.393.341 |
| D008607 | Intellectual Disability | C10.597.606.360; C23.888.592.604.646; F01.700.687; F03.625.539 |
| D054082 | Lissencephaly | C10.500.507.450.499; C16.131.666.507.450.499 |
| D008831 | Microcephaly | C05.660.207.620; C10.500.507.400.500; C16.131.621.207.620; C16.131.666.507.400.500 |
| C566906 | Cakut (supp.) | |
| C565754 | Deafness, Autosomal Dominant 20 (supp.) | |
| C580334 | Nonsyndromic Deafness (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
PharmGKB clinical annotations
1 annotations.
| Variant | Type | Level | Drugs | Phenotypes |
|---|---|---|---|---|
| rs1135989 | Toxicity | 3 | vincristine | Neurotoxicity Syndromes |
PharmGKB variants
1 variants.
| Variant | Genes | Level | Score | #Clin annots | Drugs |
|---|---|---|---|---|---|
| rs1135989 | ACTG1 | 3 | 3.00 | 1 | vincristine |
CTD chemical–gene interactions
63 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| sodium arsenite | decreases expression, increases abundance, affects cotreatment, increases expression, affects binding (+1 more) | 4 |
| bisphenol A | increases expression, affects expression, decreases expression | 3 |
| Tobacco Smoke Pollution | increases expression, increases metabolic processing | 3 |
| Air Pollutants | affects cotreatment, decreases expression, increases abundance | 2 |
| Benzo(a)pyrene | decreases expression, increases methylation | 2 |
| Copper | affects binding, decreases expression | 2 |
| Tretinoin | affects cotreatment, increases expression, decreases expression | 2 |
| Particulate Matter | decreases expression, increases abundance, increases expression | 2 |
| 9-hydroxyoctadecadienoic acid | increases expression | 1 |
| dicrotophos | increases expression | 1 |
| alpha-pinene | affects cotreatment, decreases expression, increases abundance | 1 |
| O,O-diethyl O-3,5,6-trichloro-2-pyridyl phosphate | affects expression, affects response to substance | 1 |
| salinomycin | decreases expression | 1 |
| beta-lapachone | increases expression, decreases expression | 1 |
| arsenite | decreases expression, increases abundance | 1 |
| 3,3’-diindolylmethane | decreases expression, increases reaction | 1 |
| bufalin | increases expression | 1 |
| zinc chromate | decreases expression, increases abundance | 1 |
| artenimol | affects binding | 1 |
| methacrylaldehyde | increases abundance, affects cotreatment, decreases expression | 1 |
| diallyl trisulfide | decreases expression | 1 |
| beta-methylcholine | affects expression | 1 |
| evodiamine | increases expression | 1 |
| jasplakinolide | affects binding, decreases reaction | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| chromium hexavalent ion | decreases expression, increases abundance | 1 |
| perfluorooctane sulfonic acid | decreases expression | 1 |
| thrombin receptor-activating peptide SFLLRNPNDKY | increases secretion | 1 |
| ICG 001 | decreases expression | 1 |
| ON 01910 | increases expression | 1 |
Clinical trials (associated diseases)
301 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00205881 | PHASE4 | COMPLETED | Bilateral Benefit in Adult Users of the HiRes 90K Bionic Ear System |
| NCT00331539 | PHASE4 | UNKNOWN | Relationship Between Auto NRT and Behavioural T & C Levels With the Nucleus Freedom Cochlear Implant |
| NCT00424307 | PHASE4 | UNKNOWN | Bilateral Cochlear Implant Benefit in Young Children |
| NCT00765635 | PHASE4 | COMPLETED | Chlorobutanol, Potassium Carbonate, and Irrigation in Cerumen Removal |
| NCT03321006 | PHASE4 | COMPLETED | Treating Hearing Loss to Improve Mood and Cognition in Older Adults |
| NCT01499901 | PHASE3 | WITHDRAWN | Comparison of the Bilateral Sequential and Simultaneous Cochlear Implantation in the Deaf Children |
| NCT02561091 | PHASE3 | COMPLETED | AM-111 in the Treatment of Acute Inner Ear Hearing Loss |
| NCT03331627 | PHASE3 | COMPLETED | Safety and Efficacy of STR001-IT and STR001-ER in Patients With SSHL |
| NCT05532657 | PHASE3 | ACTIVE_NOT_RECRUITING | ACHIEVE Brain Health Follow-Up Study |
| NCT00013455 | PHASE2 | COMPLETED | Quantifying Auditory Perceptual Learning Following Hearing Aid Fitting |
| NCT00323427 | PHASE2 | COMPLETED | Clinical Trial of the Living Well With Hearing Loss Workshop |
| NCT00552786 | PHASE2 | COMPLETED | Antioxidation Medication for Noise-induced Hearing Loss |
| NCT00802425 | PHASE2 | COMPLETED | Efficacy of AM-111 in Patients With Acute Sensorineural Hearing Loss |
| NCT01139281 | PHASE2 | COMPLETED | The Protective Effect of Ginkgo Biloba Extract on Cisplatin-induced Ototoxicity in Humans |
| NCT01451853 | PHASE2 | UNKNOWN | SPI-1005 for Prevention and Treatment of Chemotherapy Induced Hearing Loss |
| NCT01588925 | PHASE2 | COMPLETED | Hearing Preservation Using Dexamethasone and Hyaluronic Acid for Cochlear Implantation |
| NCT01773278 | PHASE2 | RECRUITING | Cholesterol and Antioxidant Treatment in Patients With Smith-Lemli-Opitz Syndrome (SLOS) |
| NCT02832128 | PHASE2 | COMPLETED | Evaluating Possible Improvement in Speech and Hearing Tests After 28 Days of Dosing of the Study Drug AUT00063 Compared to Placebo (QuicKfire) |
| NCT04915183 | PHASE2 | RECRUITING | Atorvastatin to Reduce Cisplatin-Induced Hearing Loss Among Individuals With Head and Neck Cancer |
| NCT05258773 | PHASE2 | COMPLETED | Evaluation of the Presence of SENS-401 in the Perilymph |
| NCT06340633 | PHASE2 | RECRUITING | SPI-1005 in Adults Receiving Cochlear Implant |
| NCT00582946 | PHASE1 | COMPLETED | Wide-Bandwidth Open Canal Hearing Aid For Better Multitalker Speech Understanding |
| NCT00584155 | PHASE1 | WITHDRAWN | Protection From Cisplatin Ototoxicity by Lactated Ringers |
| NCT01206829 | PHASE1 | UNKNOWN | Hearing Impairment, Cognitive Therapy and Coping |
| NCT01256229 | PHASE1 | COMPLETED | Outcomes In Children With Developmental Delay And Deafness |
| NCT01343394 | PHASE1 | WITHDRAWN | Safety of Autologous Human Umbilical Cord Blood Mononuclear Fraction to Treat Acquired Hearing Loss in Children |
| NCT01452607 | PHASE1 | COMPLETED | Study to Evaluate the Safety and Pharmacokinetics of SPI-1005 |
| NCT02259595 | PHASE1 | COMPLETED | Study to Determine the Safety, Tolerability, and Pharmacokinetic Profile of HPN-07 and HPN-07 Plus NAC |
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| NCT01802190 | Not specified | TERMINATED | Prevalence of POU4F3 and SLC17A8 Mutations |
| NCT00486577 | PHASE2/PHASE3 | COMPLETED | Chronic Electrical Stimulation of the Auditory Cortex for Intractable Tinnitus |
| NCT00789061 | PHASE2/PHASE3 | UNKNOWN | Applying Proton Pump Inhibitor to Prevent and Treat Acute Fluctuating Hearing Loss in Patients With SLC26A4 Mutation |
| NCT01423409 | PHASE2/PHASE3 | COMPLETED | Multicenter Trial Assessing an Innovative VAS of Pain Among Deaf People |
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| NCT06545175 | PHASE1/PHASE2 | RECRUITING | Intracochlear Application of VSF1.01 for the Reduction of Cochlear Implant Surgery Related Trauma |
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Related Atlas pages
- Associated diseases: Baraitser-winter syndrome 2, nonsyndromic genetic hearing loss, autosomal dominant nonsyndromic hearing loss 20, Baraitser-Winter cerebrofrontofacial syndrome, autosomal dominant nonsyndromic hearing loss
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): autosomal dominant nonsyndromic hearing loss, autosomal dominant nonsyndromic hearing loss 20, Baraitser-Winter cerebrofrontofacial syndrome, Baraitser-Winter syndrome 1, Baraitser-winter syndrome 2, congenital anomaly of kidney and urinary tract, hearing loss disorder, lissencephaly spectrum disorders, nonsyndromic genetic hearing loss