ACTN1
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Summary
ACTN1 (actinin alpha 1, HGNC:163) is a protein-coding gene on chromosome 14q24.1, encoding Alpha-actinin-1 (P12814). F-actin cross-linking protein which is thought to anchor actin to a variety of intracellular structures.
Alpha actinins belong to the spectrin gene superfamily which represents a diverse group of cytoskeletal proteins, including the alpha and beta spectrins and dystrophins. Alpha actinin is an actin-binding protein with multiple roles in different cell types. In nonmuscle cells, the cytoskeletal isoform is found along microfilament bundles and adherens-type junctions, where it is involved in binding actin to the membrane. In contrast, skeletal, cardiac, and smooth muscle isoforms are localized to the Z-disc and analogous dense bodies, where they help anchor the myofibrillar actin filaments. This gene encodes a nonmuscle, cytoskeletal, alpha actinin isoform and maps to the same site as the structurally similar erythroid beta spectrin gene. Three transcript variants encoding different isoforms have been found for this gene.
Source: NCBI Gene 87 — RefSeq curated summary.
At a glance
- Gene–disease (curated): platelet-type bleeding disorder 15 (Definitive, ClinGen) — +1 more curated relationship
- GWAS associations: 28
- Clinical variants (ClinVar): 615 total — 4 pathogenic, 16 likely-pathogenic
- Phenotypes (HPO): 12
- Druggable target: yes
- MANE Select transcript:
NM_001130004
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:163 |
| Approved symbol | ACTN1 |
| Name | actinin alpha 1 |
| Location | 14q24.1 |
| Locus type | gene with protein product |
| Status | Approved |
| Ensembl gene | ENSG00000072110 |
| Ensembl biotype | protein_coding |
| OMIM | 102575 |
| Entrez | 87 |
Gene structure
Transcript identifiers
Ensembl transcripts: 66 — 44 protein_coding, 15 retained_intron, 4 protein_coding_CDS_not_defined, 3 nonsense_mediated_decay
ENST00000193403, ENST00000376839, ENST00000394419, ENST00000438964, ENST00000538545, ENST00000544964, ENST00000553290, ENST00000553370, ENST00000553659, ENST00000553779, ENST00000553882, ENST00000554158, ENST00000554508, ENST00000555075, ENST00000555616, ENST00000556083, ENST00000556203, ENST00000556343, ENST00000556432, ENST00000556433, ENST00000556571, ENST00000679147, ENST00000682130, ENST00000682291, ENST00000682298, ENST00000682331, ENST00000682378, ENST00000682381, ENST00000682522, ENST00000682559, ENST00000682602, ENST00000683069, ENST00000683198, ENST00000683225, ENST00000683261, ENST00000683267, ENST00000683342, ENST00000683780, ENST00000684096, ENST00000684146, ENST00000684182, ENST00000684287, ENST00000684340, ENST00000684598, ENST00000684638, ENST00000684639, ENST00000684713, ENST00000904823, ENST00000904824, ENST00000904825, ENST00000904826, ENST00000904827, ENST00000904828, ENST00000904829, ENST00000904830, ENST00000904831, ENST00000904832, ENST00000904833, ENST00000904834, ENST00000938290, ENST00000938291, ENST00000938292, ENST00000938293, ENST00000947391, ENST00000947392, ENST00000947393
RefSeq mRNA: 24 — MANE Select: NM_001130004
NM_001102, NM_001130004, NM_001130005, NM_001411035, NM_001411036, NM_001424012, NM_001424013, NM_001424014, NM_001424015, NM_001424016, NM_001424017, NM_001424018, NM_001424019, NM_001424020, NM_001424021, NM_001424022, NM_001424023, NM_001424024, NM_001424025, NM_001424026, NM_001424027, NM_001424028, NM_001424029, NM_001424030
CCDS: CCDS45129, CCDS45130, CCDS91890, CCDS91891, CCDS9792
Canonical transcript exons
ENST00000394419 — 22 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000658753 | 68893655 | 68893747 |
| ENSE00000940967 | 68885425 | 68885575 |
| ENSE00001518409 | 68878458 | 68878523 |
| ENSE00001706026 | 68892053 | 68892283 |
| ENSE00001805921 | 68890139 | 68890286 |
| ENSE00002510216 | 68978952 | 68979302 |
| ENSE00003474646 | 68877082 | 68877240 |
| ENSE00003485245 | 68880810 | 68880989 |
| ENSE00003497180 | 68904655 | 68904736 |
| ENSE00003525196 | 68884775 | 68884883 |
| ENSE00003533023 | 68912156 | 68912242 |
| ENSE00003551599 | 68884168 | 68884308 |
| ENSE00003573123 | 68882873 | 68883055 |
| ENSE00003586089 | 68874128 | 68875017 |
| ENSE00003595746 | 68882458 | 68882592 |
| ENSE00003610614 | 68909955 | 68910042 |
| ENSE00003626569 | 68878989 | 68879069 |
| ENSE00003643367 | 68879962 | 68880108 |
| ENSE00003672428 | 68925558 | 68925672 |
| ENSE00003682622 | 68909318 | 68909396 |
| ENSE00003686136 | 68921006 | 68921125 |
| ENSE00003690562 | 68902477 | 68902562 |
Expression profiles
Bgee: expression breadth ubiquitous, 292 present calls, max score 99.88.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 242.3703 / max 1404.9377, expressed in 1815 samples.
FANTOM5 promoters (10 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 143866 | 165.3186 | 1802 |
| 143865 | 38.3928 | 1783 |
| 143864 | 19.2010 | 1763 |
| 143867 | 16.7720 | 1754 |
| 143854 | 0.6850 | 465 |
| 143853 | 0.5614 | 316 |
| 143863 | 0.5437 | 287 |
| 143852 | 0.4617 | 249 |
| 207272 | 0.2395 | 88 |
| 207273 | 0.1946 | 79 |
Top tissues by expression
295 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| blood vessel layer | UBERON:0004797 | 99.88 | gold quality |
| saphenous vein | UBERON:0007318 | 99.67 | gold quality |
| ascending aorta | UBERON:0001496 | 99.60 | gold quality |
| thoracic aorta | UBERON:0001515 | 99.60 | gold quality |
| lower esophagus muscularis layer | UBERON:0035833 | 99.60 | gold quality |
| aorta | UBERON:0000947 | 99.58 | gold quality |
| right coronary artery | UBERON:0001625 | 99.58 | gold quality |
| lower esophagus | UBERON:0013473 | 99.58 | gold quality |
| popliteal artery | UBERON:0002250 | 99.57 | gold quality |
| tibial artery | UBERON:0007610 | 99.57 | gold quality |
| stromal cell of endometrium | CL:0002255 | 99.54 | gold quality |
| descending thoracic aorta | UBERON:0002345 | 99.53 | gold quality |
| smooth muscle tissue | UBERON:0001135 | 99.48 | gold quality |
| esophagogastric junction muscularis propria | UBERON:0035841 | 99.46 | gold quality |
| myometrium | UBERON:0001296 | 99.43 | gold quality |
| seminal vesicle | UBERON:0000998 | 99.39 | gold quality |
| mucosa of stomach | UBERON:0001199 | 99.39 | gold quality |
| coronary artery | UBERON:0001621 | 99.39 | gold quality |
| left coronary artery | UBERON:0001626 | 99.39 | gold quality |
| body of uterus | UBERON:0009853 | 99.39 | gold quality |
| muscle layer of sigmoid colon | UBERON:0035805 | 99.38 | gold quality |
| cauda epididymis | UBERON:0004360 | 99.19 | gold quality |
| left uterine tube | UBERON:0001303 | 99.13 | gold quality |
| hair follicle | UBERON:0002073 | 99.12 | gold quality |
| urethra | UBERON:0000057 | 99.09 | gold quality |
| gall bladder | UBERON:0002110 | 98.91 | gold quality |
| urinary bladder | UBERON:0001255 | 98.83 | gold quality |
| nipple | UBERON:0002030 | 98.80 | gold quality |
| trabecular bone tissue | UBERON:0002483 | 98.80 | gold quality |
| prostate gland | UBERON:0002367 | 98.75 | gold quality |
Single-cell (SCXA)
Detected in 20 experiment(s), a significant marker in 17.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-MTAB-8142 | yes | 1106.08 |
| E-MTAB-10287 | yes | 46.23 |
| E-HCAD-4 | yes | 37.09 |
| E-MTAB-8410 | yes | 36.63 |
| E-GEOD-135922 | yes | 36.48 |
| E-HCAD-1 | yes | 34.32 |
| E-CURD-112 | yes | 33.02 |
| E-CURD-122 | yes | 22.18 |
| E-HCAD-10 | yes | 16.71 |
| E-MTAB-9221 | yes | 16.37 |
| E-MTAB-9067 | yes | 14.48 |
| E-CURD-46 | yes | 9.36 |
| E-HCAD-11 | yes | 9.20 |
| E-MTAB-9801 | yes | 6.77 |
| E-MTAB-10553 | yes | 5.77 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
85 targeting ACTN1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-5692B | 100.00 | 71.32 | 2622 |
| HSA-MIR-5692C | 100.00 | 71.32 | 2622 |
| HSA-MIR-5692A | 100.00 | 74.40 | 6850 |
| HSA-MIR-30A-5P | 100.00 | 76.31 | 3233 |
| HSA-MIR-30B-5P | 100.00 | 76.29 | 3248 |
| HSA-MIR-30C-5P | 100.00 | 76.29 | 3248 |
| HSA-MIR-30D-5P | 100.00 | 76.32 | 3233 |
| HSA-MIR-30E-5P | 100.00 | 76.32 | 3242 |
| HSA-MIR-6867-5P | 100.00 | 82.21 | 3464 |
| HSA-MIR-4531 | 99.99 | 69.70 | 3181 |
| HSA-MIR-548C-3P | 99.99 | 74.01 | 7587 |
| HSA-MIR-19A-3P | 99.98 | 75.33 | 2762 |
| HSA-MIR-19B-3P | 99.98 | 75.44 | 2754 |
| HSA-MIR-3065-5P | 99.97 | 71.56 | 3281 |
| HSA-MIR-507 | 99.97 | 70.11 | 1915 |
| HSA-MIR-557 | 99.96 | 70.01 | 1640 |
| HSA-MIR-590-3P | 99.96 | 74.34 | 6478 |
| HSA-MIR-4267 | 99.96 | 66.53 | 2368 |
| HSA-MIR-3912-5P | 99.95 | 66.11 | 925 |
| HSA-MIR-9983-3P | 99.94 | 71.48 | 3631 |
| HSA-MIR-1236-3P | 99.94 | 68.04 | 1695 |
| HSA-MIR-218-5P | 99.93 | 72.22 | 2103 |
| HSA-MIR-450B-5P | 99.92 | 71.48 | 3175 |
| HSA-MIR-374A-5P | 99.90 | 71.34 | 2923 |
| HSA-MIR-374B-5P | 99.90 | 69.98 | 2734 |
| HSA-MIR-129-5P | 99.88 | 70.26 | 3273 |
| HSA-MIR-369-3P | 99.85 | 70.52 | 2264 |
| HSA-MIR-4739 | 99.84 | 65.25 | 1832 |
| HSA-MIR-1321 | 99.84 | 65.30 | 1811 |
Literature-anchored findings (GeneRIF, showing 40)
- Identification of a 31 kD amino-terminal fragment of alpha-actinin protein, named mactinin, that promotes monocyte/macrophage maturation in vitro. (PMID:10029173)
- the focal adhesion component alpha-actinin interacts with syndecan-4 in a beta-integrin-independent manner (PMID:12493766)
- an alpha-actinin-dependent association between the actin cytoskeleton and A2AR trafficking (PMID:12837758)
- the dynamics of alpha-actinin are important for PI 3-kinase-induced reorganization of the actin cytoskeleton (PMID:15710624)
- GluR4 may regulate its synaptic targeting through phosphorylation-dependent interactions with alpha-Actinin-1 and IQGAP1 (PMID:16190873)
- S1P-induced recruitment of S1P1 to CEM fractions promotes PI3 kinase-mediated Tiam1/Rac1 activation required for alpha-actinin-1/4-regulated cortical actin rearrangement and EC barrier enhancement (PMID:16195373)
- Results show that the interaction between two species with weak affinity in solution, such as vinculin and alpha-actinin, can be visualized in a membrane-like environment. (PMID:16430917)
- Alpha-actinin plays a role in regulating cell survival through stabilization of focal adhesions and regulation of TNF-alpha-induced survival signaling. (PMID:16807302)
- Results show that the interaction between ICAM-5 and alpha-actinin is mediated through binding of positively charged amino acids near the transmembrane domain of ICAM-5, and this interaction may play an important role in neuronal differentiation. (PMID:16820411)
- Interaction of alpha 1 actinin with ICAM-1 is required for leukocyte extravasation. (PMID:16951376)
- Molecular dynamics method was applied to investigate the mechanical behaviour of the human skeletal muscle alpha-actinin. (PMID:17115122)
- there is an alpha-actinin-1-dependent mGlu(5b) receptor association with the actin cytoskeleton modulating receptor cell surface expression and functioning (PMID:17311919)
- ACT1 is de-expressed in endometriosis and endometrioid carcinoma compared with normal uterine epithelium. (PMID:17525629)
- Alpha-actinin-1 phosphorylation at Y12 plays a crucial role in pressure-activated cell adhesion and mechanotransduction by facilitating Src recruitment to beta(1)-integrin, and consequently the association of focal adhesion kinase with Src. (PMID:17898132)
- Taken together, alpha-actinin not only attaches TRPP3 to the cytoskeleton but also up-regulates TRPP3 channel function. (PMID:17944866)
- study examines the mechanism by which phosphoinositide binding regulates alpha-actinin function (PMID:17965186)
- A subset of the tumor-specific splicing alterations (ACTN1, CALD1, and VCL) was found in all three organs and may represent general cancer-related splicing events. (PMID:18353764)
- alpha-actinin-1 may play a role in human glomerular disease (PMID:18408146)
- two sm-titin Zq domains interact with each other and with the two R2-R3 sites in the alpha-actinin central rod (PMID:18519573)
- interaction of GNE with alpha-actinin 1 might point to its involvement in alpha-actinin mediated processes (PMID:18560563)
- ICAM-2 mediates suppression of metastatic phenotype and the interaction of ICAM-2/alpha-actinin/actin represents the first complete membrane-linker protein-actin linkage to impact tumor cell motility in vitro and metastatic potential in an in vivo model. (PMID:18978946)
- Data describe alterations of myocardial intercellular and cell-matrix contacts in hypertrophic tissue, and show intracellular translocation of beta-catenin, alpha-actinin and chondroitin sulfate proteoglycan 6 in both an animal model and in LVH patients. (PMID:19094982)
- Mactinin is a novel inducer of Hsp90 activity on monocytes and may serve to perpetuate and augment monocytic activation. (PMID:19715605)
- cathepsin X overexpression reduced LFA-1 clustering and induced an intermediate affinity LFA-1 conformation that is known to associate with alpha-actinin-1. (PMID:19750481)
- Both alpha-actinin-1 and alpha-actinin-4 make critical and distinct contributions to cytoskeletal organization, rigidity-sensing, and motility of glioma cells. (PMID:20037648)
- Alpha-actinin 1 and 4 are differentially regulated during the development and progression of astrocytomas because each of these isoforms uniquely contributes to distinct malignant properties of astrocytoma cells. (PMID:20156433)
- The results suggest that the interaction between HAMLET and alpha-actinins promotes tumor cell detachment. (PMID:21408150)
- Actinin-1 and cortactin showed matrix-contact-side localization in adenocarcinoma cells. (PMID:21474972)
- The C-terminal polybasic region of CYTH2 participates in interacting directly with the EFh2 domain of ACTN1. (PMID:22659138)
- The alpha-actinin/EWI motif-containing protein 2 (EWI-2) complex is involved in regulation of the actin cytoskeleton at T cell immune and virological synapses, providing a link between membrane microdomains and structures involved in T cell recognition. (PMID:22689882)
- Loss of dorsal stress fibers either by depleting alpha-actinin-1 or Rac1 results in a beta-actin accumulation at the leading edge in migrating and spreading cells. (PMID:23132927)
- Alpha actinin 1, a cytoskeleton protein implicated in inflammatory/degenerative autoimmune diseases, might be regarded as a novel multiple sclerosis autoantigen. (PMID:23139387)
- Transduction of mouse fetal liver-derived megakaryocytes with disease-associated ACTN1 variants caused a disorganized actin-based cytoskeleton in megakaryocytes. (PMID:23434115)
- The tyrosine phosphorylation of alpha-actinin1 at Y12 and alpha-actinin4 at Y265 is critical for dorsal stress fiber establishment, transverse arc maintenance and focal adhesion maturation. (PMID:23454549)
- Actinin-alpha1 readily forms heterodimers composed of monomers that may have different properties and interacting proteins, altering our view of non-muscle actinin, thus altering our view of non-muscle actinin function. (PMID:23557398)
- We conclude that alpha-actinin stabilizes Ca(V)1.2 at the plasma membrane and that its displacement by calcium-calmodulin triggers calcium-induced endocytosis of Ca(V)1.2, thus providing an important negative feedback mechanism for calcium influx. (PMID:23664615)
- A missense mutation in the alpha-actinin 1 gene (ACTN1) is the cause of autosomal dominant macrothrombocytopenia in a large French family. (PMID:24069336)
- ACTN1-related thrombocytopenia is characterized by mild course with platelet macrocytosis and low risk for bleeding. (PMID:25361813)
- ArgBP2 interaction with alpha-actinin and actin stress fibers inhibits cell migration (PMID:25429109)
- ACTN1 determines the motility of keratinocytes by regulating the organization of the actin cytoskeleton, focal adhesion, and hemidesmosome proteins complexes, thereby modulating cell speed, lamellipodial dynamics, and directed migration (PMID:25431851)
Cross-species orthologs
4 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | actn1 | ENSDARG00000007219 |
| mus_musculus | Actn1 | ENSMUSG00000015143 |
| rattus_norvegicus | Actn1 | ENSRNOG00000056756 |
| drosophila_melanogaster | Actn | FBGN0000667 |
Paralogs (36): SYNE2 (ENSG00000054654), SPTB (ENSG00000070182), ACTN2 (ENSG00000077522), DSP (ENSG00000096696), DRP2 (ENSG00000102385), SPTBN1 (ENSG00000115306), MACF1 (ENSG00000127603), FLNC (ENSG00000128591), ACTN4 (ENSG00000130402), SYNE1 (ENSG00000131018), MICAL2 (ENSG00000133816), DTNA (ENSG00000134769), MICAL1 (ENSG00000135596), FLNB (ENSG00000136068), SPTBN5 (ENSG00000137877), DTNB (ENSG00000138101), GAS2L3 (ENSG00000139354), DST (ENSG00000151914), UTRN (ENSG00000152818), SPTBN4 (ENSG00000160460), SPTA1 (ENSG00000163554), CLMN (ENSG00000165959), PKHD1 (ENSG00000170927), SPTBN2 (ENSG00000173898), SYNE3 (ENSG00000176438), PLEC (ENSG00000178209), SMTNL2 (ENSG00000188176), FLNA (ENSG00000196924), SPTAN1 (ENSG00000197694), DMD (ENSG00000198947), PKHD1L1 (ENSG00000205038), DYTN (ENSG00000232125), MICAL3 (ENSG00000243156), ACTN3 (ENSG00000248746), EPPK1 (ENSG00000261150), GAS2L2 (ENSG00000270765)
Protein
Protein identifiers
Alpha-actinin-1 — P12814 (reviewed: P12814)
Alternative names: Alpha-actinin cytoskeletal isoform, F-actin cross-linking protein, Non-muscle alpha-actinin-1
All UniProt accessions (24): P12814, A0A024R694, A0A7I2V4Y4, A0A804HII9, A0A804HIN7, A0A804HIY0, A0A804HJN7, A0A804HJQ9, A0A804HJU8, A0A804HK61, A0A804HKE2, A0A804HL31, A0A804HLD0, A0A804HLF4, G3V2E8, G3V2N5, G3V2W4, G3V2X9, G3V380, G3V5M4, H0YJ11, H0YJW3, H7C5W8, H9KV75
UniProt curated annotations — full annotation on UniProt →
Function. F-actin cross-linking protein which is thought to anchor actin to a variety of intracellular structures. Association with IGSF8 regulates the immune synapse formation and is required for efficient T-cell activation.
Subunit / interactions. Homodimer; antiparallel. Interacts with MYOZ2, TTID and LPP. Interacts with DDN. Interacts with PSD. Interacts with MICALL2. Interacts with DNM2 and CTTN. Interacts with PDLIM1. Interacts with PDLIM2. Interacts with PDLIM4 (via PDZ domain). Interacts with IGSF8.
Subcellular location. Cytoplasm. Cytoskeleton. Myofibril. Sarcomere. Z line. Cell membrane. Cell junction. Cell projection. Ruffle.
Disease relevance. Bleeding disorder, platelet-type, 15 (BDPLT15) [MIM:615193] An autosomal dominant form of macrothrombocytopenia. Affected individuals usually have no or only mild bleeding tendency, such as epistaxis. Laboratory studies show decreased numbers of large platelets and anisocytosis, but the platelets show no in vitro functional abnormalities. The disease is caused by variants affecting the gene represented in this entry.
Similarity. Belongs to the alpha-actinin family.
Isoforms (4)
| UniProt ID | Names | Canonical? |
|---|---|---|
| P12814-1 | 1 | yes |
| P12814-2 | 2 | |
| P12814-3 | 3 | |
| P12814-4 | 4 |
RefSeq proteins (24): NP_001093, NP_001123476, NP_001123477, NP_001397964, NP_001397965, NP_001410941, NP_001410942, NP_001410943, NP_001410944, NP_001410945, NP_001410946, NP_001410947, NP_001410948, NP_001410949, NP_001410950, NP_001410951, NP_001410952, NP_001410953, NP_001410954, NP_001410955, NP_001410956, NP_001410957, NP_001410958, NP_001410959 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001589 | Actinin_actin-bd_CS | Conserved_site |
| IPR001715 | CH_dom | Domain |
| IPR002017 | Spectrin_repeat | Repeat |
| IPR002048 | EF_hand_dom | Domain |
| IPR011992 | EF-hand-dom_pair | Homologous_superfamily |
| IPR014837 | EF-hand_Ca_insen | Domain |
| IPR018159 | Spectrin/alpha-actinin | Repeat |
| IPR018247 | EF_Hand_1_Ca_BS | Binding_site |
| IPR036872 | CH_dom_sf | Homologous_superfamily |
Pfam: PF00307, PF00435, PF08726, PF13405
UniProt features (81 total): helix 25, modified residue 9, sequence variant 9, sequence conflict 8, strand 8, binding site 5, domain 4, repeat 4, splice variant 3, turn 3, region of interest 2, chain 1
Structure
Experimental structures (PDB)
4 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 2EYI | X-RAY DIFFRACTION | 1.7 |
| 2EYN | X-RAY DIFFRACTION | 1.8 |
| 2N8Y | SOLUTION NMR | |
| 2N8Z | SOLUTION NMR |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P12814-F1 | 85.39 | 0.50 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Ligand- & substrate-binding residues (5): 759; 761; 763; 765; 770
Post-translational modifications (9): 1, 6, 12, 95, 195, 471, 676, 677, 890
Function
Pathways and Gene Ontology
Reactome pathways
20 pathways
| ID | Pathway |
|---|---|
| R-HSA-114608 | Platelet degranulation |
| R-HSA-3000170 | Syndecan interactions |
| R-HSA-373753 | Nephrin family interactions |
| R-HSA-446388 | Regulation of cytoskeletal remodeling and cell spreading by IPP complex components |
| R-HSA-9013405 | RHOD GTPase cycle |
| R-HSA-9013418 | RHOBTB2 GTPase cycle |
| R-HSA-9035034 | RHOF GTPase cycle |
| R-HSA-109582 | Hemostasis |
| R-HSA-1474244 | Extracellular matrix organization |
| R-HSA-1500931 | Cell-Cell communication |
| R-HSA-162582 | Signal Transduction |
| R-HSA-194315 | Signaling by Rho GTPases |
| R-HSA-3000171 | Non-integrin membrane-ECM interactions |
| R-HSA-446353 | Cell-extracellular matrix interactions |
| R-HSA-446728 | Cell junction organization |
| R-HSA-76002 | Platelet activation, signaling and aggregation |
| R-HSA-76005 | Response to elevated platelet cytosolic Ca2+ |
| R-HSA-9012999 | RHO GTPase cycle |
| R-HSA-9706574 | RHOBTB GTPase Cycle |
| R-HSA-9716542 | Signaling by Rho GTPases, Miro GTPases and RHOBTB3 |
MSigDB gene sets: 576 (showing top):
GOBP_MYELOID_CELL_DIFFERENTIATION, CREL_01, MODULE_52, DAVIES_MULTIPLE_MYELOMA_VS_MGUS_DN, GOBP_ACTIN_FILAMENT_BUNDLE_ORGANIZATION, YAGI_AML_WITH_INV_16_TRANSLOCATION, BERTUCCI_MEDULLARY_VS_DUCTAL_BREAST_CANCER_DN, KAAB_FAILED_HEART_ATRIUM_DN, GOCC_SECRETORY_GRANULE, REACTOME_PLATELET_ACTIVATION_SIGNALING_AND_AGGREGATION, GOBP_PLATELET_ACTIVATION, MODULE_45, KAAB_HEART_ATRIUM_VS_VENTRICLE_UP, GOBP_FOCAL_ADHESION_ASSEMBLY, TATTATA_MIR374
GO Biological Process (12): actin filament organization (GO:0007015), actin cytoskeleton organization (GO:0030036), platelet formation (GO:0030220), platelet morphogenesis (GO:0036344), regulation of apoptotic process (GO:0042981), focal adhesion assembly (GO:0048041), actin filament bundle assembly (GO:0051017), actin filament network formation (GO:0051639), muscle cell development (GO:0055001), positive regulation of DNA-templated transcription (GO:0045893), anatomical structure formation involved in morphogenesis (GO:0048646), postsynapse organization (GO:0099173)
GO Molecular Function (15): transcription coactivator activity (GO:0003713), double-stranded RNA binding (GO:0003725), integrin binding (GO:0005178), calcium ion binding (GO:0005509), vinculin binding (GO:0017166), protein homodimerization activity (GO:0042803), transmembrane transporter binding (GO:0044325), actin filament binding (GO:0051015), structural constituent of postsynapse (GO:0099186), actin binding (GO:0003779), protein binding (GO:0005515), cytoskeletal protein binding (GO:0008092), identical protein binding (GO:0042802), protein-containing complex binding (GO:0044877), metal ion binding (GO:0046872)
GO Cellular Component (28): stress fiber (GO:0001725), ruffle (GO:0001726), extracellular region (GO:0005576), obsolete extracellular space (GO:0005615), cytoplasm (GO:0005737), cytosol (GO:0005829), plasma membrane (GO:0005886), brush border (GO:0005903), cell-cell junction (GO:0005911), fascia adherens (GO:0005916), focal adhesion (GO:0005925), Z disc (GO:0030018), cell junction (GO:0030054), cortical actin cytoskeleton (GO:0030864), platelet alpha granule lumen (GO:0031093), pseudopodium (GO:0031143), cell projection (GO:0042995), extracellular exosome (GO:0070062), glutamatergic synapse (GO:0098978), cytoskeleton (GO:0005856), actin filament (GO:0005884), actin cytoskeleton (GO:0015629), membrane (GO:0016020), sarcomere (GO:0030017), organelle (GO:0043226), synapse (GO:0045202), anchoring junction (GO:0070161), plasma membrane bounded cell projection (GO:0120025)
Reactome top-level categories
Rollup of top-13 pathways:
| Category | Pathways |
|---|---|
| RHO GTPase cycle | 3 |
| Cell-Cell communication | 2 |
| Response to elevated platelet cytosolic Ca2+ | 1 |
| Non-integrin membrane-ECM interactions | 1 |
| Cell-extracellular matrix interactions | 1 |
| RHOBTB GTPase Cycle | 1 |
| Signaling by Rho GTPases, Miro GTPases and RHOBTB3 | 1 |
| Extracellular matrix organization | 1 |
| Cell junction organization | 1 |
| Hemostasis | 1 |
| Platelet activation, signaling and aggregation | 1 |
| Signaling by Rho GTPases | 1 |
| Signal Transduction | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 6 |
| protein binding | 3 |
| protein-containing complex binding | 2 |
| cytoskeletal protein binding | 2 |
| binding | 2 |
| plasma membrane bounded cell projection | 2 |
| actin cytoskeleton organization | 1 |
| supramolecular fiber organization | 1 |
| cytoskeleton organization | 1 |
| actin filament-based process | 1 |
| myeloid cell differentiation | 1 |
| platelet morphogenesis | 1 |
| anatomical structure formation involved in morphogenesis | 1 |
| cell morphogenesis | 1 |
| apoptotic process | 1 |
| regulation of programmed cell death | 1 |
| cell-substrate junction assembly | 1 |
| cell-matrix adhesion | 1 |
| cellular component assembly | 1 |
| actin filament bundle organization | 1 |
| actin filament organization | 1 |
| muscle cell differentiation | 1 |
| cell development | 1 |
| DNA-templated transcription | 1 |
| regulation of DNA-templated transcription | 1 |
| positive regulation of RNA biosynthetic process | 1 |
| anatomical structure morphogenesis | 1 |
| developmental process | 1 |
| cellular component organization | 1 |
| synapse organization | 1 |
| transcription coregulator activity | 1 |
| positive regulation of DNA-templated transcription | 1 |
| RNA binding | 1 |
| signaling receptor binding | 1 |
| cell adhesion molecule binding | 1 |
| metal ion binding | 1 |
| identical protein binding | 1 |
| protein dimerization activity | 1 |
| actin binding | 1 |
| postsynapse | 1 |
Protein interactions and networks
STRING
2464 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| ACTN1 | CFL1 | P23528 | 908 |
| ACTN1 | CFL2 | Q9Y281 | 897 |
| ACTN1 | VCL | P18206 | 893 |
| ACTN1 | PDLIM1 | O00151 | 854 |
| ACTN1 | GSN | P06396 | 837 |
| ACTN1 | SRC | P12931 | 795 |
| ACTN1 | ACTN4 | O43707 | 775 |
| ACTN1 | TLN1 | Q9Y490 | 765 |
| ACTN1 | ACTB | P02570 | 760 |
| ACTN1 | PDLIM2 | Q96JY6 | 759 |
| ACTN1 | PFN1 | P07737 | 733 |
| ACTN1 | TTN | Q8WZ42 | 733 |
| ACTN1 | DCAF5 | Q96JK2 | 724 |
| ACTN1 | TPM1 | P09493 | 719 |
| ACTN1 | MYOT | Q9UBF9 | 716 |
IntAct
287 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| ACTN1 | MYOZ2 | psi-mi:“MI:0915”(physical association) | 0.810 |
| MYOZ2 | ACTN1 | psi-mi:“MI:0915”(physical association) | 0.810 |
| ACTN1 | EPM2AIP1 | psi-mi:“MI:0915”(physical association) | 0.720 |
| MICALL2 | ACTN1 | psi-mi:“MI:0915”(physical association) | 0.720 |
| EPM2AIP1 | ACTN1 | psi-mi:“MI:0915”(physical association) | 0.720 |
| ACTN1 | MICALL2 | psi-mi:“MI:0915”(physical association) | 0.720 |
| MAPT | ANXA2 | psi-mi:“MI:0914”(association) | 0.720 |
| CFTR | ESYT2 | psi-mi:“MI:0914”(association) | 0.710 |
| ACTN1 | OAS1 | psi-mi:“MI:0915”(physical association) | 0.670 |
| OAS1 | ACTN1 | psi-mi:“MI:0915”(physical association) | 0.670 |
| ACTN1 | C14orf119 | psi-mi:“MI:0915”(physical association) | 0.670 |
| ACTN1 | MYOZ1 | psi-mi:“MI:0915”(physical association) | 0.670 |
| GNE | ACTN1 | psi-mi:“MI:0407”(direct interaction) | 0.590 |
| GNE | ACTN1 | psi-mi:“MI:0915”(physical association) | 0.590 |
| ACTN1 | psi-mi:“MI:0915”(physical association) | 0.560 |
BioGRID (469): ACTN1 (Two-hybrid), ACTN3 (Two-hybrid), OAS1 (Two-hybrid), EPM2AIP1 (Two-hybrid), MYOZ2 (Two-hybrid), MICALL2 (Two-hybrid), KCTD6 (Two-hybrid), SPERT (Two-hybrid), ACTN1 (Affinity Capture-MS), ACTN1 (Affinity Capture-MS), ACTN1 (Affinity Capture-MS), ACTN1 (Affinity Capture-MS), ACTN1 (Affinity Capture-MS), ACTN1 (Affinity Capture-MS), ACTN1 (Affinity Capture-MS)
ESM2 similar proteins: A5D7D1, L7UZ85, O43707, O88990, P05094, P11277, P12814, P15508, P18091, P20111, P26232, P30997, P35609, P46940, P57780, Q00078, Q00963, Q01082, Q08043, Q0E908, Q0III9, Q13576, Q2PFV7, Q3B7N2, Q3UQ44, Q3ZC55, Q4QR29, Q4WVG0, Q5M7J9, Q5R416, Q5RCS6, Q61301, Q62018, Q62261, Q6DEU9, Q6INS3, Q6NXC0, Q6PD62, Q7G188, Q7PKQ5
Diamond homologs: A5D7D1, D3ZEN0, D3ZHA0, D3ZHV2, D3ZQL6, E1BBG2, F1MF74, F1RA39, F6QZ15, G3MWR8, G3V7L1, L7UZ85, M9MRD1, O13728, O15020, O43707, O75369, O76329, O88990, O94851, O97592, P05094, P05095, P07751, P11277, P11530, P11531, P11532, P11533, P12814, P13395, P13466, P15508, P16086, P16546, P18091, P20111, P21333, P30427, P35609
SIGNOR signaling
10 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| PTPN1 | up-regulates | ACTN1 | dephosphorylation |
| PTK2 | down-regulates | ACTN1 | phosphorylation |
| ACTN1 | “up-regulates quantity by stabilization” | F-actin_assembly | binding |
| SHANK1 | “up-regulates activity” | ACTN1 | relocalization |
| SHANK2 | “up-regulates activity” | ACTN1 | relocalization |
| SHANK3 | “up-regulates activity” | ACTN1 | relocalization |
| ACTN1 | up-regulates | Actin_cytoskeleton_reorganization | |
| PTK2 | “down-regulates activity” | ACTN1 | phosphorylation |
| ACTN1 | “down-regulates activity” | PTK2 | binding |
| PTPN1 | “down-regulates activity” | ACTN1 | dephosphorylation |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 127 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Leishmania infection | 6 | 11.7× | 4e-03 |
| Parasitic Infection Pathways | 6 | 11.7× | 4e-03 |
| FCGR3A-mediated phagocytosis | 5 | 11.1× | 8e-03 |
| Regulation of actin dynamics for phagocytic cup formation | 5 | 11.0× | 8e-03 |
| RHOQ GTPase cycle | 5 | 10.8× | 8e-03 |
| Sensory processing of sound by inner hair cells of the cochlea | 5 | 9.7× | 9e-03 |
| Signaling by ALK fusions and activated point mutants | 5 | 8.9× | 1e-02 |
| RHO GTPase Effectors | 7 | 5.7× | 1e-02 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| sarcomere organization | 5 | 17.9× | 2e-03 |
| synapse organization | 6 | 15.8× | 1e-03 |
| platelet aggregation | 5 | 15.8× | 3e-03 |
| positive regulation of translation | 5 | 10.6× | 9e-03 |
| actin cytoskeleton organization | 12 | 8.9× | 1e-05 |
| positive regulation of apoptotic process | 9 | 4.8× | 9e-03 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
615 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 4 |
| Likely pathogenic | 16 |
| Uncertain significance | 268 |
| Likely benign | 182 |
| Benign | 87 |
Top pathogenic / likely-pathogenic (20)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1684463 | NM_001130004.2(ACTN1):c.384G>T (p.Trp128Cys) | Pathogenic |
| 2423522 | NC_000014.8:g.(?68699594)(70654407_?)del | Pathogenic |
| 42029 | NM_001130004.2(ACTN1):c.94C>A (p.Gln32Lys) | Pathogenic |
| 42033 | NM_001130004.2(ACTN1):c.673G>A (p.Glu225Lys) | Pathogenic |
| 1684466 | NM_001130004.2(ACTN1):c.127T>A (p.Ser43Thr) | Likely pathogenic |
| 1693577 | NM_001130004.2(ACTN1):c.342A>C (p.Glu114Asp) | Likely pathogenic |
| 1704200 | NM_001130004.2(ACTN1):c.2551G>A (p.Val851Ile) | Likely pathogenic |
| 2691936 | NM_001130004.2(ACTN1):c.2225G>T (p.Gly742Val) | Likely pathogenic |
| 3358738 | NM_001130004.2(ACTN1):c.1184T>A (p.Leu395Gln) | Likely pathogenic |
| 3393125 | NM_001130004.2(ACTN1):c.388A>G (p.Ile130Val) | Likely pathogenic |
| 443425 | GRCh37/hg19 14q24.1-24.2(chr14:68035240-73568130)x1 | Likely pathogenic |
| 57807 | GRCh38/hg38 14q24.1(chr14:67876421-69247382)x1 | Likely pathogenic |
| 627187 | NM_001130004.2(ACTN1):c.1592_1593insGGGGCCATGGAG (p.Asp531delinsGluGlyProTrpSer) | Likely pathogenic |
| 627246 | NM_001130004.2(ACTN1):c.1592A>T (p.Asp531Val) | Likely pathogenic |
| 666541 | NM_001130004.2(ACTN1):c.970A>G (p.Lys324Glu) | Likely pathogenic |
| 666543 | NM_001130004.2(ACTN1):c.986A>G (p.Gln329Arg) | Likely pathogenic |
| 666544 | NM_001130004.2(ACTN1):c.1193A>C (p.Lys398Thr) | Likely pathogenic |
| 666545 | NM_001130004.2(ACTN1):c.1295C>T (p.Ala432Val) | Likely pathogenic |
| 666548 | NM_001130004.2(ACTN1):c.1864C>T (p.His622Tyr) | Likely pathogenic |
| 988884 | NM_001130004.2(ACTN1):c.2728G>C (p.Gly910Arg) | Likely pathogenic |
SpliceAI
3575 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 14:68877077:CCCA:C | donor_loss | 1.0000 |
| 14:68877078:CCAC:C | donor_loss | 1.0000 |
| 14:68877079:CACC:C | donor_loss | 1.0000 |
| 14:68877080:A:T | donor_loss | 1.0000 |
| 14:68877236:TCTCC:T | acceptor_gain | 1.0000 |
| 14:68877237:CTCC:C | acceptor_gain | 1.0000 |
| 14:68877237:CTCCC:C | acceptor_gain | 1.0000 |
| 14:68877238:TCC:T | acceptor_gain | 1.0000 |
| 14:68877238:TCCCT:T | acceptor_gain | 1.0000 |
| 14:68877239:CC:C | acceptor_gain | 1.0000 |
| 14:68877239:CCC:C | acceptor_gain | 1.0000 |
| 14:68877240:CC:C | acceptor_gain | 1.0000 |
| 14:68877241:C:CC | acceptor_gain | 1.0000 |
| 14:68877241:C:T | acceptor_gain | 1.0000 |
| 14:68877241:CTGGA:C | acceptor_loss | 1.0000 |
| 14:68879956:TCTCA:T | donor_loss | 1.0000 |
| 14:68879957:CTCA:C | donor_loss | 1.0000 |
| 14:68879958:TCA:T | donor_loss | 1.0000 |
| 14:68879959:CACC:C | donor_loss | 1.0000 |
| 14:68879960:A:AC | donor_gain | 1.0000 |
| 14:68879960:AC:A | donor_gain | 1.0000 |
| 14:68879960:ACCCG:A | donor_loss | 1.0000 |
| 14:68879961:C:CC | donor_gain | 1.0000 |
| 14:68879961:CC:C | donor_gain | 1.0000 |
| 14:68880104:ATGTG:A | acceptor_gain | 1.0000 |
| 14:68880105:TGTG:T | acceptor_gain | 1.0000 |
| 14:68880106:GTG:G | acceptor_gain | 1.0000 |
| 14:68880107:TG:T | acceptor_gain | 1.0000 |
| 14:68880107:TGCTG:T | acceptor_loss | 1.0000 |
| 14:68880109:C:CC | acceptor_gain | 1.0000 |
AlphaMissense
6105 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 14:68874892:G:C | F882L | 1.000 |
| 14:68874892:G:T | F882L | 1.000 |
| 14:68874894:A:G | F882L | 1.000 |
| 14:68874958:G:C | C860W | 1.000 |
| 14:68874983:A:G | L852P | 1.000 |
| 14:68874995:A:G | L848P | 1.000 |
| 14:68879019:G:C | S777R | 1.000 |
| 14:68879019:G:T | S777R | 1.000 |
| 14:68879021:T:G | S777R | 1.000 |
| 14:68879026:A:G | L775P | 1.000 |
| 14:68879968:A:C | F758L | 1.000 |
| 14:68879968:A:T | F758L | 1.000 |
| 14:68879970:A:G | F758L | 1.000 |
| 14:68879987:C:G | R752P | 1.000 |
| 14:68880024:C:G | A740P | 1.000 |
| 14:68880029:C:G | R738P | 1.000 |
| 14:68880035:A:G | L736P | 1.000 |
| 14:68880041:T:G | Q734P | 1.000 |
| 14:68880083:A:G | L720P | 1.000 |
| 14:68882558:A:G | L618P | 1.000 |
| 14:68882569:C:A | R614S | 1.000 |
| 14:68882569:C:G | R614S | 1.000 |
| 14:68882570:C:A | R614M | 1.000 |
| 14:68882881:A:G | W604R | 1.000 |
| 14:68882881:A:T | W604R | 1.000 |
| 14:68883029:G:C | F554L | 1.000 |
| 14:68883029:G:T | F554L | 1.000 |
| 14:68883030:A:G | F554S | 1.000 |
| 14:68883031:A:G | F554L | 1.000 |
| 14:68883051:A:G | L547P | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000002670 (14:68946427 C>T), RS1000010249 (14:68926430 G>A), RS1000075180 (14:68933376 T>C), RS1000076949 (14:68932626 C>A), RS1000098351 (14:68972981 T>C), RS1000149713 (14:68905501 A>G), RS1000150994 (14:68892605 G>A), RS1000164318 (14:68969835 A>G), RS1000207662 (14:68944737 T>A,C), RS1000223476 (14:68881939 T>A,C), RS1000232356 (14:68923738 C>T), RS1000252445 (14:68949206 A>G), RS1000300977 (14:68969540 C>T), RS1000325606 (14:68957405 C>G), RS1000345082 (14:68918167 C>A)
Disease associations
OMIM: gene MIM:102575 | disease phenotypes: MIM:615193
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| platelet-type bleeding disorder 15 | Definitive | Autosomal dominant |
| autosomal dominant macrothrombocytopenia | Supportive | Autosomal dominant |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| platelet-type bleeding disorder 15 | Definitive | AD |
Mondo (3): platelet-type bleeding disorder 15 (MONDO:0014078), thrombocytopenia (MONDO:0002049), autosomal dominant macrothrombocytopenia (MONDO:0015372)
Orphanet (1): Autosomal dominant macrothrombocytopenia (Orphanet:140957)
HPO phenotypes
12 total (12 of 12 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000421 | Epistaxis |
| HP:0000978 | Bruising susceptibility |
| HP:0001873 | Thrombocytopenia |
| HP:0004846 | Prolonged bleeding after surgery |
| HP:0004866 | Impaired ADP-induced platelet aggregation |
| HP:0006298 | Prolonged bleeding after dental extraction |
| HP:0011877 | Increased mean platelet volume |
| HP:0031126 | Impaired clot retraction |
| HP:0032438 | Platelet anisocytosis |
| HP:0040185 | Macrothrombocytopenia |
| HP:0100608 | Metrorrhagia |
GWAS associations
28 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST000349_6 | Smoking behavior | 7.000000e-06 |
| GCST001942_16 | Prostate cancer | 3.000000e-10 |
| GCST002127_23 | Periodontitis (Mean PAL) | 4.000000e-06 |
| GCST002147_1 | Fibrinogen | 1.000000e-08 |
| GCST003075_53 | Cognitive decline rate in late mild cognitive impairment | 9.000000e-07 |
| GCST003075_89 | Cognitive decline rate in late mild cognitive impairment | 2.000000e-06 |
| GCST003383_2 | Platelet count | 1.000000e-28 |
| GCST004121_5 | Fibrinogen levels | 4.000000e-13 |
| GCST004122_7 | Fibrinogen levels | 8.000000e-14 |
| GCST004599_168 | Mean platelet volume | 1.000000e-28 |
| GCST004599_169 | Mean platelet volume | 2.000000e-27 |
| GCST004616_56 | Platelet distribution width | 1.000000e-16 |
| GCST004863_68 | Mosquito bite size | 4.000000e-06 |
| GCST005568_55 | Rheumatoid arthritis (ACPA-positive) | 2.000000e-06 |
| GCST005991_34 | Platelet count | 2.000000e-11 |
| GCST006586_33 | Urinary albumin excretion | 6.000000e-09 |
| GCST006940_151 | Neurociticism | 2.000000e-09 |
| GCST006947_14 | Feeling fed-up | 1.000000e-08 |
| GCST006951_6 | Feeling hurt | 8.000000e-09 |
| GCST007626_2 | Lack of perseverance | 7.000000e-07 |
| GCST007923_22 | Medication use (drugs used in diabetes) | 1.000000e-08 |
| GCST009798_33 | Asthma | 7.000000e-13 |
| GCST90002385_30 | High light scatter reticulocyte count | 4.000000e-09 |
| GCST90002395_205 | Mean platelet volume | 7.000000e-11 |
| GCST90002395_206 | Mean platelet volume | 3.000000e-51 |
| GCST90002400_135 | Plateletcrit | 5.000000e-11 |
| GCST90002401_75 | Platelet distribution width | 6.000000e-25 |
| GCST90002402_188 | Platelet count | 3.000000e-36 |
EFO canonical traits (13, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004318 | smoking behavior |
| EFO:0007710 | cognitive decline measurement |
| EFO:0004309 | platelet count |
| EFO:0007984 | platelet component distribution width |
| EFO:0008378 | mosquito bite reaction size measurement |
| EFO:0004285 | albuminuria |
| EFO:0007660 | neuroticism measurement |
| EFO:0009588 | feeling “fed-up” measurement |
| EFO:0009599 | feeling emotionally hurt measurement |
| EFO:0006946 | behavioural disinhibition measurement |
| EFO:0009924 | Drugs used in diabetes use measurement |
| EFO:0007986 | reticulocyte count |
| EFO:0007985 | platelet crit |
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D013921 | Thrombocytopenia | C15.378.140.855; C15.378.243.937 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL6066960 (SINGLE PROTEIN)
PharmGKB: 1 entry (VIP=true, CPIC=false)
PharmGKB variants
1 variants.
| Variant | Genes | Level | Score | #Clin annots | Drugs |
|---|---|---|---|---|---|
| rs2268979 | ACTN1 | 0.00 | 0 |
ChEMBL bioactivities
2 potent at pChembl≥5 of 2 total, top 2 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 6.75 | Kd | 177.4 | nM | CHEMBL5653589 |
| 6.75 | ED50 | 177.4 | nM | CHEMBL5653589 |
PubChem BioAssay actives
1 with measured affinity, of 2 total; 1 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| 4-methyl-3-[(2-methyl-6-pyridin-3-ylpyrazolo[3,4-d]pyrimidin-4-yl)amino]-N-[3-(trifluoromethyl)phenyl]benzamide | 2147795: Binding affinity to human ACTN1 incubated for 45 mins by Kinobead based pull down assay | kd | 0.1774 | uM |
CTD chemical–gene interactions
92 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Benzo(a)pyrene | increases expression, decreases expression | 5 |
| methylmercuric chloride | increases expression, affects cotreatment | 4 |
| bisphenol A | decreases reaction, increases abundance, affects cotreatment, decreases expression, increases expression | 4 |
| cobaltous chloride | decreases expression, increases expression | 2 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, decreases expression, increases expression | 2 |
| Acetaminophen | decreases expression, increases expression | 2 |
| Doxorubicin | affects response to substance, increases expression | 2 |
| Estradiol | increases expression, affects cotreatment | 2 |
| Phenylmercuric Acetate | affects cotreatment, increases expression | 2 |
| Tobacco Smoke Pollution | affects expression | 2 |
| Valproic Acid | increases expression, increases methylation | 2 |
| Cyclosporine | decreases expression, increases expression | 2 |
| aristolochic acid I | increases expression | 1 |
| bisphenol F | increases expression | 1 |
| ginger extract | decreases expression, decreases reaction, increases abundance, increases expression | 1 |
| dicrotophos | increases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| alpha-pinene | decreases expression, increases abundance, affects cotreatment | 1 |
| bis(tri-n-butyltin)oxide | increases expression | 1 |
| sodium arsenate | decreases expression | 1 |
| titanium dioxide | decreases expression | 1 |
| pyrogallol 1,3-dimethyl ether | decreases expression, affects cotreatment, affects localization | 1 |
| tributyltin | increases expression | 1 |
| quercitrin | affects expression | 1 |
| beta-lapachone | decreases expression, increases expression | 1 |
| trimellitic anhydride | decreases expression | 1 |
| sodium arsenite | increases expression | 1 |
| sulindac sulfide | decreases expression | 1 |
| ochratoxin A | increases expression | 1 |
| 4-hydroxy-2-nonenal | affects binding | 1 |
ChEMBL screening assays
1 unique, capped per target: 1 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL5650837 | Binding | Binding affinity to human ACTN1 incubated for 45 mins by Kinobead based pull down assay | NVP-BHG712: Effects of Regioisomers on the Affinity and Selectivity toward the EPHrin Family. — ChemMedChem |
Cellosaurus cell lines
8 cell lines: 3 cancer cell line, 3 transformed cell line, 2 spontaneously immortalized cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_B1IY | Abcam HeLa ACTN1 KO | Cancer cell line | Female |
| CVCL_D7G1 | Ubigene HEK293T ACTN1 KO | Transformed cell line | Female |
| CVCL_SB29 | HAP1 ACTN1 (-) 1 | Cancer cell line | Male |
| CVCL_XL01 | HAP1 ACTN1 (-) 2 | Cancer cell line | Male |
| CVCL_ZV88 | HEK293 Actinin-C-cpstFRET | Transformed cell line | Female |
| CVCL_ZV89 | HEK293 Actinin-M-cpstFRET | Transformed cell line | Female |
| CVCL_ZV92 | MDCK Actinin-C-cpstFRET | Spontaneously immortalized cell line | Female |
| CVCL_ZV93 | MDCK Actinin-M-cpstFRET | Spontaneously immortalized cell line | Female |
Clinical trials (associated diseases)
240 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00039858 | PHASE4 | COMPLETED | Evaluation of Argatroban Injection in Pediatric Patients Requiring Anticoagulant Alternatives to Heparin |
| NCT00239733 | PHASE4 | TERMINATED | Anti-D for Treating Thrombocytopenia in Adults Infected With Hepatitis C Virus With or Without HIV Co-Infection |
| NCT00907478 | PHASE4 | COMPLETED | Study on Bone Marrow Morphology in Adults Receiving Romiplostim for Treatment of Thrombocytopenia Associated With Immune Thrombocytopenia Purpura (ITP) |
| NCT01727401 | PHASE4 | TERMINATED | Thromboprophylaxis of Venous Thromboembolism in Acutely-ill Medical Inpatients With Thrombocytopenia |
| NCT02032134 | PHASE4 | TERMINATED | Protocol for the Infusion of Buffy Coat-derived Cryopreserved Platelets in Patients With Severe Thrombocytopenia |
| NCT02267993 | PHASE4 | COMPLETED | Efficacy and Safety of rhTPO for the Treatment of Thrombocytopenia After Chemotherapy in AML Patients |
| NCT03633019 | PHASE4 | UNKNOWN | High-dose Use of rhTPO in CIT Patients |
| NCT03688191 | PHASE4 | UNKNOWN | Study of Sirolimus in CTD-TP in China |
| NCT04906083 | PHASE4 | UNKNOWN | Avatrombopag in Patients With End-stage Liver Disease and Thrombocytopenia |
| NCT05217719 | PHASE4 | UNKNOWN | Effects of Recombinant Human Thrombopoietin on Platelet Levels in ICU Patients |
| NCT05255003 | PHASE4 | RECRUITING | STrategies for Anticoagulation in Patients With thRombocytopenia and Cancer-associated Thrombosis |
| NCT05382013 | PHASE4 | UNKNOWN | Efficacy and Safety of Avatrombopag for Treating TCP in HBV-ACLF Patients Receiving ALSS Treatment |
| NCT05944458 | PHASE4 | COMPLETED | Efficacy of Intravenous N-Acetylcysteine in Preventing Linezolid-Induced Thrombocytopenia in Critically Ill Patients |
| NCT06562738 | PHASE4 | RECRUITING | Clinical Study on Efficacy and Safety of Hetrombopag in the Preoperative Patients of Thrombocytopenia |
| NCT00037791 | PHASE3 | COMPLETED | Safety and Efficacy of (PN-152,243)/PN-196,444 in the Prevention of Thrombocytopenia |
| NCT00039910 | PHASE3 | COMPLETED | Safety and Efficacy of (PN-152,243)/PN-196,444 in the Prevention of Thrombocytopenia |
| NCT00073580 | PHASE3 | COMPLETED | Angiomax in Patients With HIT/HITTS Type II Undergoing Off-Pump Coronary Artery Bypass Grafting (CABG) (CHOOSE) |
| NCT00102323 | PHASE3 | COMPLETED | AMG 531 Treatment of Thrombocytopenic Subjects With Immune (Idiopathic) Thrombocytopenic Purpura (ITP) Refractory to Splenectomy |
| NCT00102336 | PHASE3 | COMPLETED | AMG 531 Treatment of Thrombocytopenic Subjects With Immune (Idiopathic) Thrombocytopenic Purpura (ITP) Prior to Splenectomy |
| NCT00116688 | PHASE3 | COMPLETED | Open Label Extension Study of Romiplostim (AMG 531) in Thrombocytopenic Patients With Immune (Idiopathic) Thrombocytopenic Purpura (ITP) |
| NCT00128713 | PHASE3 | COMPLETED | Optimal Platelet Dose Strategy for Management of Thrombocytopenia |
| NCT00151866 | PHASE3 | COMPLETED | Efficacy of Transfusions With Platelets Stored in Platelet Additive Solution II Versus Plasma |
| NCT00261924 | PHASE3 | COMPLETED | Efficacy and Safety Study of Platelets Treated for Pathogen Inactivation and Stored for Up to Seven Days |
| NCT00415532 | PHASE3 | COMPLETED | Romiplostim (AMG 531) Versus Medical Standard of Care for Immune (Idiopathic) Thrombocytopenic Purpura |
| NCT00420914 | PHASE3 | TERMINATED | Strategies for Transfusion of Platelets (SToP) |
| NCT00501345 | PHASE3 | TERMINATED | Aspirin in Patients With Myocardial Infarction and Thrombocytopenia |
| NCT00508820 | PHASE3 | COMPLETED | An Open Label Study of Romiplostim in Adult Thrombocytopenic Subjects With ITP |
| NCT00678587 | PHASE3 | TERMINATED | Eltrombopag To Reduce The Need For Platelet Transfusion In Subjects With Chronic Liver Disease And Thrombocytopenia Undergoing Elective Invasive Procedures |
| NCT01438840 | PHASE3 | COMPLETED | Efficacy and Safety of Oral E5501 Plus Standard of Care for the Treatment of Thrombocytopenia in Adults With Chronic Immune Thrombocytopenia (Amendment 02) |
| NCT01444417 | PHASE3 | COMPLETED | Safety and Efficacy Study of Romiplostim to Treat Immune Thrombocytopenia (ITP) in Pediatric Patients |
| NCT01805648 | PHASE3 | UNKNOWN | Efficacy and Safety Study of Maintenance Treatment With rhTPO in Thrombocytopenic Subjects With ITP |
| NCT02244658 | PHASE3 | UNKNOWN | Recombinant Human Thrombopoietin (rhTPO) in Management of Chemotherapy-induced Thrombocytopenia in Acute Myelocytic Leukemia |
| NCT02389621 | PHASE3 | COMPLETED | Safety and Efficacy Study of Lusutrombopag for Thrombocytopenia in Patients With Chronic Liver Disease Undergoing Elective Invasive Procedures |
| NCT02444728 | PHASE3 | TERMINATED | Cyclophosphamide and Hydroxychloroquine for Thrombocytopenia in SLE |
| NCT02487563 | PHASE3 | COMPLETED | Prospective Study of Patients With Thrombocytopenia Following HSCT |
| NCT02578901 | PHASE3 | COMPLETED | American Trial Using Tranexamic Acid in Thrombocytopenia |
| NCT03326843 | PHASE3 | TERMINATED | Avatrombopag for the Treatment of Thrombocytopenia in Adults Scheduled for a Surgical Procedure |
| NCT03515096 | PHASE3 | COMPLETED | Eltrombopag vs. rhTPO to Increase Platelet Level After HSCT |
| NCT05563064 | PHASE3 | UNKNOWN | Effect of Herbal Formulation on Thrombocytes Count |
| NCT07442513 | PHASE3 | RECRUITING | Comparison of Etamsylate Versus Placebo to Prevent Bleeding in HSCT |
Related Atlas pages
- Associated diseases: platelet-type bleeding disorder 15, autosomal dominant macrothrombocytopenia
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): autosomal dominant macrothrombocytopenia, periodontitis, platelet-type bleeding disorder 15, rheumatoid arthritis, thrombocytopenia