ACVR1B
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Also known as ALK4SKR2ActRIB
Summary
ACVR1B (activin A receptor type 1B, HGNC:172) is a protein-coding gene on chromosome 12q13.13, encoding Activin receptor type-1B (P36896). Transmembrane serine/threonine kinase activin type-1 receptor forming an activin receptor complex with activin receptor type-2 (ACVR2A or ACVR2B).
This gene encodes an activin A type IB receptor. Activins are dimeric growth and differentiation factors which belong to the transforming growth factor-beta (TGF-beta) superfamily of structurally related signaling proteins. Activins signal through a heteromeric complex of receptor serine kinases which include at least two type I and two type II receptors. This protein is a type I receptor which is essential for signaling. Mutations in this gene are associated with pituitary tumors. Alternate splicing results in multiple transcript variants.
Source: NCBI Gene 91 — RefSeq curated summary.
At a glance
- Gene–disease (curated): malignant pancreatic neoplasm (No Known Disease Relationship, GenCC)
- GWAS associations: 13
- Clinical variants (ClinVar): 54 total — 4 pathogenic
- Phenotypes (HPO): 5
- Druggable target: yes — 21 molecules with ChEMBL bioactivity
- Cancer driver (intOGen): loss-of-function (tumor-suppressor-like) across 5 cancer types
- MANE Select transcript:
NM_004302
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:172 |
| Approved symbol | ACVR1B |
| Name | activin A receptor type 1B |
| Location | 12q13.13 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | ALK4, SKR2, ActRIB |
| Ensembl gene | ENSG00000135503 |
| Ensembl biotype | protein_coding |
| OMIM | 601300 |
| Entrez | 91 |
Gene structure
Transcript identifiers
Ensembl transcripts: 14 — 13 protein_coding, 1 protein_coding_CDS_not_defined
ENST00000257963, ENST00000415850, ENST00000426655, ENST00000536420, ENST00000541224, ENST00000542485, ENST00000563121, ENST00000900345, ENST00000900346, ENST00000900347, ENST00000900348, ENST00000900349, ENST00000900350, ENST00000916256
RefSeq mRNA: 15 — MANE Select: NM_004302
NM_001412774, NM_001412775, NM_001412776, NM_001412777, NM_001412778, NM_001412779, NM_001412780, NM_001412781, NM_001412782, NM_001412784, NM_001412785, NM_001412786, NM_004302, NM_020327, NM_020328
CCDS: CCDS44893, CCDS44894, CCDS8816
Canonical transcript exons
ENST00000257963 — 9 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000837888 | 51976327 | 51976575 |
| ENSE00000837889 | 51980969 | 51981199 |
| ENSE00000837890 | 51983999 | 51984166 |
| ENSE00000837892 | 51986818 | 51986942 |
| ENSE00000919840 | 51991863 | 51991993 |
| ENSE00000939414 | 51993985 | 51997078 |
| ENSE00002295292 | 51951699 | 51951834 |
| ENSE00003505810 | 51985192 | 51985348 |
| ENSE00003668967 | 51975265 | 51975504 |
Expression profiles
Bgee: expression breadth ubiquitous, 296 present calls, max score 99.76.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 9.8576 / max 149.5984, expressed in 1754 samples.
FANTOM5 promoters (1 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 125534 | 9.8576 | 1754 |
Top tissues by expression
298 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| secondary oocyte | CL:0000655 | 99.76 | gold quality |
| oocyte | CL:0000023 | 99.40 | gold quality |
| middle temporal gyrus | UBERON:0002771 | 97.96 | gold quality |
| pancreatic ductal cell | CL:0002079 | 97.70 | gold quality |
| renal medulla | UBERON:0000362 | 97.53 | gold quality |
| Brodmann (1909) area 23 | UBERON:0013554 | 97.30 | gold quality |
| type B pancreatic cell | CL:0000169 | 96.63 | gold quality |
| lateral nuclear group of thalamus | UBERON:0002736 | 96.55 | gold quality |
| parotid gland | UBERON:0001831 | 96.17 | gold quality |
| cervix squamous epithelium | UBERON:0006922 | 95.88 | gold quality |
| nephron tubule | UBERON:0001231 | 95.61 | gold quality |
| Brodmann (1909) area 10 | UBERON:0013541 | 95.27 | gold quality |
| frontal pole | UBERON:0002795 | 95.25 | gold quality |
| jejunal mucosa | UBERON:0000399 | 95.18 | gold quality |
| esophagus squamous epithelium | UBERON:0006920 | 95.14 | gold quality |
| squamous epithelium | UBERON:0006914 | 95.06 | gold quality |
| cortical plate | UBERON:0005343 | 94.85 | gold quality |
| kidney epithelium | UBERON:0004819 | 94.82 | gold quality |
| epithelium of esophagus | UBERON:0001976 | 94.62 | gold quality |
| gingival epithelium | UBERON:0001949 | 94.53 | gold quality |
| bronchial epithelial cell | CL:0002328 | 94.48 | gold quality |
| epithelium of bronchus | UBERON:0002031 | 94.40 | gold quality |
| bronchus | UBERON:0002185 | 94.30 | gold quality |
| adult organism | UBERON:0007023 | 94.21 | gold quality |
| upper leg skin | UBERON:0004262 | 94.09 | gold quality |
| orbitofrontal cortex | UBERON:0004167 | 94.05 | gold quality |
| metanephric glomerulus | UBERON:0004736 | 93.97 | gold quality |
| renal glomerulus | UBERON:0000074 | 93.93 | gold quality |
| colonic mucosa | UBERON:0000317 | 93.86 | gold quality |
| gingiva | UBERON:0001828 | 93.73 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 7.45 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): SMAD7
miRNA regulators (miRDB)
81 targeting ACVR1B, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-8485 | 100.00 | 77.57 | 4731 |
| HSA-MIR-4481 | 100.00 | 66.42 | 1669 |
| HSA-MIR-4283 | 100.00 | 66.42 | 2097 |
| HSA-MIR-6077 | 99.99 | 68.04 | 2299 |
| HSA-MIR-196A-1-3P | 99.99 | 72.15 | 2772 |
| HSA-MIR-10401-5P | 99.99 | 65.79 | 948 |
| HSA-LET-7C-3P | 99.95 | 73.42 | 2862 |
| HSA-MIR-6721-5P | 99.93 | 68.92 | 2981 |
| HSA-MIR-4492 | 99.87 | 68.25 | 3611 |
| HSA-MIR-5582-3P | 99.86 | 72.48 | 4221 |
| HSA-MIR-221-5P | 99.86 | 65.45 | 1052 |
| HSA-MIR-8073 | 99.86 | 65.21 | 1118 |
| HSA-MIR-659-3P | 99.85 | 70.69 | 1620 |
| HSA-MIR-576-5P | 99.84 | 70.46 | 2582 |
| HSA-MIR-765 | 99.84 | 68.24 | 2442 |
| HSA-MIR-3121-3P | 99.82 | 71.96 | 3630 |
| HSA-MIR-3156-3P | 99.76 | 66.72 | 939 |
| HSA-MIR-3680-3P | 99.75 | 72.51 | 3095 |
| HSA-MIR-6764-5P | 99.75 | 67.89 | 2304 |
| HSA-MIR-11181-3P | 99.75 | 66.38 | 2205 |
| HSA-MIR-6715B-5P | 99.64 | 69.63 | 1420 |
| HSA-MIR-6134 | 99.63 | 65.68 | 1537 |
| HSA-MIR-1260A | 99.61 | 66.67 | 1098 |
| HSA-MIR-1260B | 99.61 | 66.67 | 1098 |
| HSA-MIR-24-3P | 99.59 | 69.97 | 1934 |
| HSA-MIR-425-5P | 99.59 | 67.67 | 900 |
| HSA-MIR-762 | 99.58 | 66.61 | 1994 |
| HSA-MIR-3136-3P | 99.57 | 66.59 | 781 |
| HSA-MIR-7155-3P | 99.57 | 66.48 | 794 |
| HSA-MIR-4269 | 99.55 | 69.89 | 1373 |
Literature-anchored findings (GeneRIF, showing 39)
- distribution in gestational tissues across human pregnancy and during labour (PMID:11969340)
- data indicate that truncated Alk4 isoforms interfere with activin signaling pathways and thereby may contribute to uncontrolled cell growth (PMID:12364468)
- Activin signaling mediated by ActRIB-Smad2 system in the ovary may thus be essential for the regulation of follicular differentiation. (PMID:12639945)
- there is only a partial overlap of the binding sites on ALK4 and ALK3 for activin-A and bone morphogenetic protein-2, respectively (PMID:12665502)
- ALK4 binds to activin at a specific site in order to signal via type II receptors (PMID:15123686)
- Dpr2 binds to the TGFbeta receptors ALK5 and ALK4, and accelerates lysosomal degradation of these receptors (PMID:15459392)
- findings indicate a new inhibitory function of FKBP12 as an adaptor molecule for the Smad7-Smurf1 complex to regulate the duration of the activin signal through activin type I receptors (PMID:16720724)
- a regulation mode of miR-24 on erythropoiesis by impeding ALK4 expression. (PMID:17906079)
- Study indicate that the synthetic h-CFC interacts with the ALK4 receptor with a K(D) in micro M range, that the h-CFC overall topology is determined by the presence of three disulfide bridges. (PMID:19035567)
- activin A signal is transduced through the activin A type 1 receptor, ALK4, and transactivates several TGF-beta target genes in a SMAD-independent manner. (PMID:20226172)
- We applied a two-stage fine mapping approach, and are the first to identify and partially replicate genetic variants in the ACVR1B gene that account for genetic variation in human muscle strength. (PMID:21063444)
- Activin A-ACVRIB/ALK4-Smad-dependent collagen production was augmented in SSc fibroblasts, suggesting the involvement of this signaling mechanism in systemic sclerosis. (PMID:21377836)
- Inhibin alpha-subunit N terminus interacts with activin type IB receptor to disrupt activin signaling. (PMID:22267736)
- Act A protein levels were significantly higher in NTM tissues compared to GTM tissues. (PMID:23010638)
- ActRIBCA signaling can promote cell migration in prostate cancer cells via a network of signaling molecules that work together to trigger the process of EMT, and thereby aid in the aggressiveness and progression of prostate cancers. (PMID:23159635)
- Findings define a regulatory role of miR-98 in tumor angiogenesis and invasion through repressed ALK4 and MMP11 expression. (PMID:23211491)
- The deletion of the ACVR1B gene may mediate an aggressive cancer phenotype in pancreatic cancer. (PMID:24886203)
- ACVR1B functions as a positive regulator of monocyte/macrophage differentiation. ACVR1B knockdown promoted THP-1 proliferation by increasing Rb phosphorylation. Down-regulation reduced p-Smad2/3 and C/EBPalpha, inhibiting monocyte/macrophage differentiation. (PMID:25258381)
- This study demonstrated positive regulation of monocyte/macrophage differentiation by lnc-MC and uncovered an elaborate regulation mechanism composed of PU.1, lnc-MC, miR-199a-5p, and ACVR1B. (PMID:26149389)
- ALK4 is expressed in male germ cells and Sertoli cells. (PMID:26289399)
- Data suggest that activin A up-regulates SNAIL expression via ALK4/ACVR1B-induced SMAD signaling in trophoblast cells; elevated SNAIL contributes to up-regulation of MMP2 expression which plays key role in promoting trophoblast cell invasion. (PMID:26305619)
- in a relatively large cohort of athletes from Europe and South America we have shown that the ACVR1B rs2854464 A allele is associated with sprint/power performance in Caucasians but not in Brazilian athletes. (PMID:27253421)
- Results showed that ACVR1B expression is upregulated during latent infection with a miR-UL148D deletion virus. Data indicates miR-UL148D inhibits ACVR1B expression in latently infected cells to limit proinflammatory cytokine secretion. (PMID:27491954)
- It was concluded that ALK4 inhibition increases myogenesis but also regulates the tight balance of protein synthesis and degradation. (PMID:27733450)
- ALK4 is an important profibrotic signaling molecule in the post-MI CF. Haplodeficiency of ALK4 significantly improved LV function and survival rate by attenuating CF in vivo, ameliorated (PMID:28214509)
- Our study provided experimental and clinical evidence for the involvement of activin A and ALK4 in the pathophysiology of atrial fibrosis and atrial fibrillation (PMID:28639003)
- Overexpression of ALK4 suppressed glioma cell proliferation, migration and invasion through the inactivation of JAK/STAT3 signaling pathway. (PMID:29278854)
- Multiple emphysema apicobasal distribution loci colocalize to regulatory elements that are active across multiple tissues and cell types, and functional analyses confirm the presence of an emphysema apicobasal distribution-associated functional variant that regulates ACVR1B expression, indicating that transforming growth factor-b signaling plays a role in the emphysema apicobasal distribution phenotype. (PMID:30335480)
- Expression of ALK4 is upregulated in atrial fibrillation human atrium, with higher ALK4 expression in AF human atrium underlying hypertension. (PMID:30369314)
- Blockade of ALK4/5 signaling suppresses cadmium- and erastin-induced cell death in renal proximal tubular epithelial cells via distinct signaling mechanisms. (PMID:30804470)
- Toxoplasma activates HIF-1 by stabilizing the HIF-1alpha subunit, and this is dependent on the signaling from the the Activin-Like Kinase (ALK) receptor superfamily protein, ALK4. (PMID:30891432)
- ALK4-SMAD3/4 mediates the effects of activin A on the upregulation of PAI-1 in human granulosa lutein cells. (PMID:31982478)
- Alterations in activin A-myostatin-follistatin system associate with disease activity in inflammatory myopathies. (PMID:31990347)
- Activin A increases human trophoblast invasion by upregulating integrin beta1 through ALK4. (PMID:33230889)
- [Involvement of Notch1 and ALK4/5 Signaling Pathways in Renal Tubular Cell Death: Their Application to Clarification of Cadmium Toxicity]. (PMID:33342936)
- Implication of rare genetic variants of NODAL and ACVR1B in congenital heart disease patients from Indian population. (PMID:34666056)
- Lack of Tgfbr1 and Acvr1b synergistically stimulates myofibre hypertrophy and accelerates muscle regeneration. (PMID:35323108)
- Activin receptor ALK4 promotes adipose tissue hyperplasia by suppressing differentiation of adipocyte precursors. (PMID:36403856)
- Abundance of ACVR1B transcript is elevated during septic conditions: Perspectives obtained from a hands-on reductionist investigation. (PMID:37020544)
Cross-species orthologs
8 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | acvr1ba | ENSDARG00000018968 |
| danio_rerio | acvr1bb | ENSDARG00000052142 |
| mus_musculus | Acvr1b | ENSMUSG00000000532 |
| rattus_norvegicus | Acvr1b | ENSRNOG00000006934 |
| drosophila_melanogaster | tkv | FBGN0003716 |
| drosophila_melanogaster | babo | FBGN0011300 |
| caenorhabditis_elegans | WBGENE00000897 | |
| caenorhabditis_elegans | WBGENE00004860 |
Paralogs (11): TGFBR1 (ENSG00000106799), BMPR1A (ENSG00000107779), ACVR2B (ENSG00000114739), ACVR1 (ENSG00000115170), ACVR2A (ENSG00000121989), ACVR1C (ENSG00000123612), AMHR2 (ENSG00000135409), BMPR1B (ENSG00000138696), ACVRL1 (ENSG00000139567), TGFBR2 (ENSG00000163513), BMPR2 (ENSG00000204217)
Protein
Protein identifiers
Activin receptor type-1B — P36896 (reviewed: P36896)
Alternative names: Activin receptor type IB, Activin receptor-like kinase 4, Serine/threonine-protein kinase receptor R2
All UniProt accessions (2): P36896, F5H5Q2
UniProt curated annotations — full annotation on UniProt →
Function. Transmembrane serine/threonine kinase activin type-1 receptor forming an activin receptor complex with activin receptor type-2 (ACVR2A or ACVR2B). Transduces the activin signal from the cell surface to the cytoplasm and is thus regulating a many physiological and pathological processes including neuronal differentiation and neuronal survival, hair follicle development and cycling, FSH production by the pituitary gland, wound healing, extracellular matrix production, immunosuppression and carcinogenesis. Activin is also thought to have a paracrine or autocrine role in follicular development in the ovary. Within the receptor complex, type-2 receptors (ACVR2A and/or ACVR2B) act as a primary activin receptors whereas the type-1 receptors like ACVR1B act as downstream transducers of activin signals. Activin binds to type-2 receptor at the plasma membrane and activates its serine-threonine kinase. The activated receptor type-2 then phosphorylates and activates the type-1 receptor such as ACVR1B. Once activated, the type-1 receptor binds and phosphorylates the SMAD proteins SMAD2 and SMAD3, on serine residues of the C-terminal tail. Soon after their association with the activin receptor and subsequent phosphorylation, SMAD2 and SMAD3 are released into the cytoplasm where they interact with the common partner SMAD4. This SMAD complex translocates into the nucleus where it mediates activin-induced transcription. Inhibitory SMAD7, which is recruited to ACVR1B through FKBP1A, can prevent the association of SMAD2 and SMAD3 with the activin receptor complex, thereby blocking the activin signal. Activin signal transduction is also antagonized by the binding to the receptor of inhibin-B via the IGSF1 inhibin coreceptor. ACVR1B also phosphorylates TDP2.
Subunit / interactions. Forms an activin receptor complex with activin receptor type-2 (ACVR2A or ACVR2B). Part of a complex consisting of MAGI2/ARIP1, ACVR2A, ACVR1B and SMAD3. Interacts with SMAD2 and SMAD3. Interacts with SMAD7. Interacts with FKBP1A. Interacts with IGSF1. Interacts with CRIPTO. Interacts with TDP2. Interacts with TSC22D1/TSC-22.
Subcellular location. Cell membrane.
Tissue specificity. Expressed in many tissues, most strongly in kidney, pancreas, brain, lung, and liver.
Post-translational modifications. Autophosphorylated. Phosphorylated by activin receptor type-2 (ACVR2A or ACVR2B) in response to activin-binding at serine and threonine residues in the GS domain. Phosphorylation of ACVR1B by activin receptor type-2 regulates association with SMAD7. Ubiquitinated. Level of ubiquitination is regulated by the SMAD7-SMURF1 complex. Ubiquitinated.
Disease relevance. ACVRIB is abundantly expressed in systemic sclerosis patient fibroblasts and production of collagen is also induced by activin-A/INHBA. This suggests that the activin/ACRV1B signaling mechanism is involved in systemic sclerosis.
Activity regulation. Activin receptor type-2 (ACVR2A or ACVR2B) activates the type-1 receptor through phosphorylation of its regulatory GS domain.
Domain organisation. The GS domain is a 30-amino-acid sequence adjacent to the N-terminal boundary of the kinase domain and highly conserved in all other known type-1 receptors but not in type-2 receptors. The GS domain is the site of activation through phosphorylation by the II receptors.
Similarity. Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily.
Isoforms (5)
| UniProt ID | Names | Canonical? |
|---|---|---|
| P36896-1 | 1, SKR2-1 | yes |
| P36896-2 | 2, SKR2-2 | |
| P36896-3 | 3, SKR2-3 | |
| P36896-4 | 4 | |
| P36896-5 | 5 |
RefSeq proteins (15): NP_001399703, NP_001399704, NP_001399705, NP_001399706, NP_001399707, NP_001399708, NP_001399709, NP_001399710, NP_001399711, NP_001399713, NP_001399714, NP_001399715, NP_004293, NP_064732, NP_064733 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000333 | TGFB_receptor | Family |
| IPR000472 | Activin_recp | Domain |
| IPR000719 | Prot_kinase_dom | Domain |
| IPR003605 | GS_dom | Domain |
| IPR008271 | Ser/Thr_kinase_AS | Active_site |
| IPR011009 | Kinase-like_dom_sf | Homologous_superfamily |
| IPR017441 | Protein_kinase_ATP_BS | Binding_site |
| IPR045860 | Snake_toxin-like_sf | Homologous_superfamily |
Pfam: PF00069, PF01064, PF08515
Enzyme classification (BRENDA):
- EC 2.7.10.2 — non-specific protein-tyrosine kinase (BRENDA: 41 organisms, 396 substrates, 479 inhibitors, 43 Km, 32 kcat entries)
Substrate kinetics (BRENDA)
6 substrates with measured Km, best-characterized 6. Km ranges are aggregated across organisms/conditions.
| Substrate | Km (mM) | Measurements |
|---|---|---|
| ATP | 0.014–17.64 | 12 |
| [KDSRC KINASE]-L-TYROSINE | 0.0057–0.24 | 12 |
| POLY(GLU4-TYR) | 0.018–0.659 | 10 |
| EEEEYIQ[DP]-8-HYDROXY-5-(N,N-DIMETHYLSULFONAMIDO | 0.057 | 1 |
| S1 PEPTIDE | 0.037 | 1 |
| EEEEY | — | 0 |
Catalyzed reactions (Rhea), 2 shown:
- L-seryl-[receptor-protein] + ATP = O-phospho-L-seryl-[receptor-protein] + ADP + H(+) (RHEA:18673)
- L-threonyl-[receptor-protein] + ATP = O-phospho-L-threonyl-[receptor-protein] + ADP + H(+) (RHEA:44880)
UniProt features (37 total): mutagenesis site 6, strand 6, splice variant 4, sequence variant 3, topological domain 2, sequence conflict 2, helix 2, turn 2, domain 2, binding site 2, signal peptide 1, chain 1, modified residue 1, glycosylation site 1, transmembrane region 1, active site 1
Structure
Experimental structures (PDB)
2 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 7MRZ | X-RAY DIFFRACTION | 3 |
| 7OLY | X-RAY DIFFRACTION | 3.27 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P36896-F1 | 84.09 | 0.61 |
Antibody-complex structures (SAbDab): 2 — 7MRZ, 7OLY
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (1): 335 (proton acceptor)
Ligand- & substrate-binding residues (2): 213–221; 234
Post-translational modifications (1): 380
Glycosylation sites (1): 43
Mutagenesis-validated functional residues (6):
| Position | Phenotype |
|---|---|
| 40 | increases binding to activin. |
| 70 | decreases binding to activin. |
| 73 | increases binding to activin. |
| 75 | decreases binding to activin. |
| 77 | decreases binding to activin. |
| 206 | leads to constitutive activation. |
Function
Pathways and Gene Ontology
Reactome pathways
6 pathways
| ID | Pathway |
|---|---|
| R-HSA-1181150 | Signaling by NODAL |
| R-HSA-1433617 | Regulation of signaling by NODAL |
| R-HSA-1502540 | Signaling by Activin |
| R-HSA-1266738 | Developmental Biology |
| R-HSA-162582 | Signal Transduction |
| R-HSA-9006936 | Signaling by TGFB family members |
MSigDB gene sets: 366 (showing top):
GOBP_MYELOID_CELL_DIFFERENTIATION, GGGACCA_MIR133A_MIR133B, GOBP_POSITIVE_REGULATION_OF_REPRODUCTIVE_PROCESS, GOBP_EMBRYO_DEVELOPMENT_ENDING_IN_BIRTH_OR_EGG_HATCHING, GOBP_EPITHELIUM_DEVELOPMENT, GOBP_POSITIVE_REGULATION_OF_ERYTHROCYTE_DIFFERENTIATION, GOBP_MYELOID_CELL_HOMEOSTASIS, YAGI_AML_WITH_INV_16_TRANSLOCATION, KAAB_FAILED_HEART_ATRIUM_DN, GOBP_NEGATIVE_REGULATION_OF_CELL_GROWTH, AAGCCAT_MIR135A_MIR135B, GOBP_ERYTHROCYTE_HOMEOSTASIS, GOBP_CELL_CYCLE_PHASE_TRANSITION, GRAESSMANN_APOPTOSIS_BY_DOXORUBICIN_DN, GRAESSMANN_RESPONSE_TO_MC_AND_DOXORUBICIN_DN
GO Biological Process (26): G1/S transition of mitotic cell cycle (GO:0000082), in utero embryonic development (GO:0001701), hair follicle development (GO:0001942), regulation of DNA-templated transcription (GO:0006355), signal transduction (GO:0007165), cell surface receptor protein serine/threonine kinase signaling pathway (GO:0007178), nervous system development (GO:0007399), positive regulation of gene expression (GO:0010628), negative regulation of gene expression (GO:0010629), peptidyl-threonine phosphorylation (GO:0018107), negative regulation of ossification (GO:0030279), negative regulation of cell growth (GO:0030308), activin receptor signaling pathway (GO:0032924), positive regulation of activin receptor signaling pathway (GO:0032927), nodal signaling pathway (GO:0038092), negative regulation of cell differentiation (GO:0045596), positive regulation of erythrocyte differentiation (GO:0045648), protein autophosphorylation (GO:0046777), cellular response to growth factor stimulus (GO:0071363), extrinsic apoptotic signaling pathway (GO:0097191), positive regulation of trophoblast cell migration (GO:1901165), protein phosphorylation (GO:0006468), regulation of signal transduction (GO:0009966), regulation of gene expression (GO:0010468), regulation of cell migration (GO:0030334), regulation of multicellular organismal process (GO:0051239)
GO Molecular Function (17): protein serine/threonine kinase activity (GO:0004674), transmembrane receptor protein serine/threonine kinase activity (GO:0004675), ATP binding (GO:0005524), activin receptor activity, type I (GO:0016361), activin receptor activity (GO:0017002), ubiquitin protein ligase binding (GO:0031625), inhibin binding (GO:0034711), SMAD binding (GO:0046332), metal ion binding (GO:0046872), activin binding (GO:0048185), I-SMAD binding (GO:0070411), nucleotide binding (GO:0000166), protein kinase activity (GO:0004672), protein binding (GO:0005515), kinase activity (GO:0016301), transferase activity (GO:0016740), growth factor binding (GO:0019838)
GO Cellular Component (6): plasma membrane (GO:0005886), cell surface (GO:0009986), signaling receptor complex (GO:0043235), activin receptor complex (GO:0048179), membrane (GO:0016020), serine/threonine protein kinase complex (GO:1902554)
Reactome top-level categories
Rollup of top-4 pathways:
| Category | Pathways |
|---|---|
| Developmental Biology | 1 |
| Signaling by NODAL | 1 |
| Signaling by TGFB family members | 1 |
| Signal Transduction | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| regulation of gene expression | 3 |
| activin receptor signaling pathway | 3 |
| protein binding | 3 |
| gene expression | 2 |
| protein phosphorylation | 2 |
| negative regulation of cellular process | 2 |
| cellular anatomical structure | 2 |
| mitotic cell cycle | 1 |
| mitotic cell cycle phase transition | 1 |
| cell cycle G1/S phase transition | 1 |
| chordate embryonic development | 1 |
| hair cycle process | 1 |
| anatomical structure development | 1 |
| skin epidermis development | 1 |
| DNA-templated transcription | 1 |
| regulation of RNA biosynthetic process | 1 |
| cell communication | 1 |
| cellular process | 1 |
| signaling | 1 |
| regulation of cellular process | 1 |
| cellular response to stimulus | 1 |
| enzyme-linked receptor protein signaling pathway | 1 |
| system development | 1 |
| positive regulation of macromolecule biosynthetic process | 1 |
| negative regulation of macromolecule biosynthetic process | 1 |
| peptidyl-threonine modification | 1 |
| ossification | 1 |
| regulation of ossification | 1 |
| negative regulation of multicellular organismal process | 1 |
| regulation of cell growth | 1 |
| cell growth | 1 |
| negative regulation of growth | 1 |
| transforming growth factor beta receptor superfamily signaling pathway | 1 |
| regulation of activin receptor signaling pathway | 1 |
| positive regulation of transmembrane receptor protein serine/threonine kinase signaling pathway | 1 |
| cell differentiation | 1 |
| regulation of cell differentiation | 1 |
| negative regulation of developmental process | 1 |
| erythrocyte differentiation | 1 |
| positive regulation of myeloid cell differentiation | 1 |
Protein interactions and networks
STRING
2192 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| ACVR1B | MSTN | O14793 | 995 |
| ACVR1B | CRIPTO | P13385 | 993 |
| ACVR1B | ACVR2A | P27037 | 988 |
| ACVR1B | ACVR2B | Q13705 | 988 |
| ACVR1B | TGFBR1 | P36897 | 975 |
| ACVR1B | ALK | Q9UM73 | 929 |
| ACVR1B | GDF11 | O95390 | 926 |
| ACVR1B | SMAD2 | Q15796 | 921 |
| ACVR1B | SMAD4 | Q13485 | 911 |
| ACVR1B | ACVR1C | Q8NER5 | 872 |
| ACVR1B | ACVR1 | Q04771 | 820 |
| ACVR1B | INHBA | P08476 | 814 |
| ACVR1B | SMAD3 | P84022 | 813 |
| ACVR1B | NODAL | Q96S42 | 802 |
| ACVR1B | CFC1 | P0CG37 | 789 |
IntAct
107 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| PDGFRB | PIK3R2 | psi-mi:“MI:0914”(association) | 0.610 |
| TMEM30B | KLRG2 | psi-mi:“MI:0914”(association) | 0.530 |
| MANSC1 | KLRG2 | psi-mi:“MI:0914”(association) | 0.530 |
| ADGRG5 | KLRG2 | psi-mi:“MI:0914”(association) | 0.530 |
| MRAP2 | GOLIM4 | psi-mi:“MI:0914”(association) | 0.530 |
| DLK1 | SCAMP3 | psi-mi:“MI:0914”(association) | 0.530 |
| TMEM200A | STX6 | psi-mi:“MI:0914”(association) | 0.530 |
| ACVR1B | HSP90AB1 | psi-mi:“MI:0915”(physical association) | 0.520 |
| SMAD7 | ACVR1B | psi-mi:“MI:0915”(physical association) | 0.520 |
| ACVR1B | SMAD7 | psi-mi:“MI:0915”(physical association) | 0.520 |
| FKBP1A | ACVR1B | psi-mi:“MI:0915”(physical association) | 0.510 |
| ACVR1B | FKBP1A | psi-mi:“MI:0915”(physical association) | 0.510 |
| Acvr2b | ACVR1B | psi-mi:“MI:0914”(association) | 0.500 |
| ACVR1B | Acvr2b | psi-mi:“MI:0915”(physical association) | 0.500 |
| SMAD4 | ACVR1B | psi-mi:“MI:2364”(proximity) | 0.470 |
| SMAD4 | ACVR1B | psi-mi:“MI:0915”(physical association) | 0.470 |
| ACVR1B | PRKACB | psi-mi:“MI:0915”(physical association) | 0.370 |
| OS9 | ACVR1B | psi-mi:“MI:0915”(physical association) | 0.370 |
| RXRA | ACVR1B | psi-mi:“MI:0915”(physical association) | 0.370 |
| BAG6 | ACVR1B | psi-mi:“MI:0915”(physical association) | 0.370 |
| ACVR1B | psi-mi:“MI:0915”(physical association) | 0.370 | |
| TBKBP1 | psi-mi:“MI:0914”(association) | 0.350 | |
| ndr1 | Acvr2b | psi-mi:“MI:0914”(association) | 0.350 |
| Acvr2b | ndr1 | psi-mi:“MI:0914”(association) | 0.350 |
| NS3 | C15orf61 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (134): Dok1 (Affinity Capture-Western), ACVR2A (Affinity Capture-Western), ACVR1B (Affinity Capture-MS), ACVR1B (Affinity Capture-MS), ACVR1B (Affinity Capture-MS), ACVR1B (Affinity Capture-MS), ACVR1B (Affinity Capture-MS), ACVR1B (Affinity Capture-MS), ACVR1B (Affinity Capture-MS), OTUB1 (Biochemical Activity), ACVR1B (Affinity Capture-MS), ACVR1B (Affinity Capture-MS), ACVR1B (Affinity Capture-MS), ACVR1B (Affinity Capture-MS), ACVR1B (Affinity Capture-MS)
ESM2 similar proteins: O00238, O08680, O42127, O42422, O46680, O73875, P09759, P22182, P29318, P29319, P29320, P29323, P36894, P36895, P36896, P36897, P36898, P37023, P37172, P54755, P54756, P54757, P54758, P54759, P54762, P70539, P80201, P80202, P80203, P80204, Q04771, Q05438, Q09488, Q15375, Q28041, Q5CD18, Q5RAN0, Q60629, Q61271, Q61288
Diamond homologs: A0A0P0XII1, A0A0R0HPY5, A7J1T2, C0LGD6, C0LGD8, C0LGD9, C0LGG3, C0LGR6, C0LGV0, O00238, O00506, O04086, O35607, O46680, O64556, O65440, P04627, P09560, P0C5E2, P10398, P10533, P14056, P15056, P18161, P20792, P27037, P27038, P27039, P27040, P27041, P27966, P28028, P34908, P36894, P36895, P36896, P36897, P36898, P37023, P37172
SIGNOR signaling
12 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| “SB 505124” | down-regulates | ACVR1B | “chemical inhibition” |
| ACVR2B | “up-regulates activity” | ACVR1B | phosphorylation |
| ACVR1B | “up-regulates quantity by stabilization” | HBB | |
| ACVR1B | “up-regulates quantity by stabilization” | HBA1 | |
| TDGF1 | “up-regulates activity” | ACVR1B | binding |
| NODAL | “up-regulates activity” | ACVR1B | binding |
| ACVR1B | “up-regulates activity” | SMAD2 | phosphorylation |
| ACVR1B | “up-regulates activity” | TDP2 | phosphorylation |
| ACVR2A | up-regulates | ACVR1B | phosphorylation |
| ACVR1B | “up-regulates activity” | SMAD3 | phosphorylation |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 120 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Signaling by TGFB family members | 7 | 10.9× | 1e-03 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| activin receptor signaling pathway | 6 | 51.7× | 1e-06 |
Disease & clinical
Cancer significance
From intOGen — cancer-driver classification: loss-of-function (tumor-suppressor-like) across 5 cancer types — BRCA, COAD, COADREAD, LUAD, PAAD.
Clinical variants and AI predictions
ClinVar
54 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 4 |
| Likely pathogenic | 0 |
| Uncertain significance | 40 |
| Likely benign | 0 |
| Benign | 2 |
Top pathogenic / likely-pathogenic (4)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1174607 | NM_004302.5(ACVR1B):c.912G>A (p.Met304Ile) | Pathogenic |
| 153751 | GRCh38/hg38 12q13.12-13.13(chr12:50122359-53248460)x1 | Pathogenic |
| 8227 | NM_004302.5(ACVR1B):c.1159_1163del (p.Asp387fs) | Pathogenic |
| 8228 | NM_004302.5(ACVR1B):c.1262-502_1392+24del | Pathogenic |
SpliceAI
1638 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 12:51975253:A:AG | acceptor_gain | 1.0000 |
| 12:51975254:A:G | acceptor_gain | 1.0000 |
| 12:51975262:CAGCT:C | acceptor_loss | 1.0000 |
| 12:51975263:A:AG | acceptor_gain | 1.0000 |
| 12:51975264:G:GT | acceptor_gain | 1.0000 |
| 12:51975264:GCT:G | acceptor_gain | 1.0000 |
| 12:51975264:GCTC:G | acceptor_gain | 1.0000 |
| 12:51975264:GCTCT:G | acceptor_gain | 1.0000 |
| 12:51975497:GCCC:G | donor_gain | 1.0000 |
| 12:51975502:GTG:G | donor_gain | 1.0000 |
| 12:51975505:G:GA | donor_loss | 1.0000 |
| 12:51975505:G:GG | donor_gain | 1.0000 |
| 12:51975506:T:A | donor_loss | 1.0000 |
| 12:51976316:A:AG | acceptor_gain | 1.0000 |
| 12:51976316:ACTT:A | acceptor_gain | 1.0000 |
| 12:51976317:C:G | acceptor_gain | 1.0000 |
| 12:51976319:T:TA | acceptor_gain | 1.0000 |
| 12:51976323:TCAG:T | acceptor_loss | 1.0000 |
| 12:51976325:A:AG | acceptor_gain | 1.0000 |
| 12:51976326:G:GG | acceptor_gain | 1.0000 |
| 12:51986816:A:AG | acceptor_gain | 1.0000 |
| 12:51986817:G:GG | acceptor_gain | 1.0000 |
| 12:51986940:G:GT | donor_gain | 1.0000 |
| 12:51991858:CCCAG:C | acceptor_loss | 1.0000 |
| 12:51991861:A:AC | acceptor_loss | 1.0000 |
| 12:51991861:A:AG | acceptor_gain | 1.0000 |
| 12:51991861:AG:A | acceptor_gain | 1.0000 |
| 12:51991862:G:GG | acceptor_gain | 1.0000 |
| 12:51991862:GG:G | acceptor_gain | 1.0000 |
| 12:51991862:GGA:G | acceptor_gain | 1.0000 |
AlphaMissense
3306 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 12:51975327:T:A | C52S | 1.000 |
| 12:51975327:T:C | C52R | 1.000 |
| 12:51975328:G:A | C52Y | 1.000 |
| 12:51975328:G:C | C52S | 1.000 |
| 12:51975329:C:G | C52W | 1.000 |
| 12:51975378:T:A | C69S | 1.000 |
| 12:51975378:T:C | C69R | 1.000 |
| 12:51975379:G:A | C69Y | 1.000 |
| 12:51975379:G:C | C69S | 1.000 |
| 12:51975380:C:G | C69W | 1.000 |
| 12:51975423:T:A | C84S | 1.000 |
| 12:51975423:T:C | C84R | 1.000 |
| 12:51975424:G:A | C84Y | 1.000 |
| 12:51975424:G:C | C84S | 1.000 |
| 12:51975425:C:G | C84W | 1.000 |
| 12:51975456:T:A | C95S | 1.000 |
| 12:51975456:T:C | C95R | 1.000 |
| 12:51975457:G:C | C95S | 1.000 |
| 12:51975460:G:A | C96Y | 1.000 |
| 12:51975461:C:G | C96W | 1.000 |
| 12:51975474:T:A | C101S | 1.000 |
| 12:51975475:G:A | C101Y | 1.000 |
| 12:51975475:G:C | C101S | 1.000 |
| 12:51975476:C:G | C101W | 1.000 |
| 12:51975479:C:A | N102K | 1.000 |
| 12:51975479:C:G | N102K | 1.000 |
| 12:51980993:C:T | T202I | 1.000 |
| 12:51980999:C:A | A204D | 1.000 |
| 12:51981002:G:C | R205P | 1.000 |
| 12:51981008:T:A | I207N | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000113574 (12:51960291 G>A), RS1000129374 (12:51996883 C>T), RS1000204308 (12:51955057 G>C), RS1000207428 (12:51969009 G>C), RS1000312692 (12:51972445 G>A), RS1000398477 (12:51980316 C>T), RS1000467648 (12:51965033 A>G), RS1000468371 (12:51952343 G>A,T), RS1000543407 (12:51965635 G>A,C), RS1000633244 (12:51964588 A>G), RS1000731302 (12:51978448 A>G), RS1000890762 (12:51970624 G>A), RS1000914474 (12:51995255 G>GGTGGT), RS1001108936 (12:51985065 T>C), RS1001187544 (12:51990827 C>T)
Disease associations
OMIM: gene MIM:601300 | disease phenotypes: MIM:608808
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| malignant pancreatic neoplasm | No Known Disease Relationship | Unknown |
Mondo (3): dextro-looped transposition of the great arteries (MONDO:0019443), exocrine pancreatic carcinoma (MONDO:0005192), malignant pancreatic neoplasm (MONDO:0009831)
Orphanet (3): Congenitally uncorrected transposition of the great arteries (Orphanet:860), Familial pancreatic carcinoma (Orphanet:1333), Rare carcinoma of pancreas (Orphanet:217074)
HPO phenotypes
5 total (5 of 5 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0001442 | Typified by somatic mosaicism |
| HP:0002894 | Neoplasm of the pancreas |
| HP:0003581 | Adult onset |
| HP:0410067 | Increased level of L-fucose in urine |
GWAS associations
13 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST001791_24 | Urate levels | 2.000000e-09 |
| GCST002491_14 | Age-related hearing impairment | 5.000000e-07 |
| GCST003264_1439 | Post bronchodilator FEV1/FVC ratio | 3.000000e-07 |
| GCST003264_1471 | Post bronchodilator FEV1/FVC ratio | 1.000000e-06 |
| GCST003325_3 | Lung cancer | 5.000000e-09 |
| GCST003326_3 | Adenocarcinoma | 2.000000e-09 |
| GCST004613_29 | Sum neutrophil eosinophil counts | 2.000000e-11 |
| GCST004614_7 | Granulocyte count | 2.000000e-11 |
| GCST004620_127 | Sum basophil neutrophil counts | 3.000000e-11 |
| GCST004629_102 | Neutrophil count | 2.000000e-11 |
| GCST005994_12 | Hematocrit | 9.000000e-10 |
| GCST005995_3 | Hemoglobin | 9.000000e-12 |
| GCST011456_6 | Serum CC16 levels | 2.000000e-08 |
EFO canonical traits (9, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004531 | urate measurement |
| EFO:0004713 | FEV/FVC ratio |
| EFO:0004833 | neutrophil count |
| EFO:0004842 | eosinophil count |
| EFO:0007987 | granulocyte count |
| EFO:0005090 | basophil count |
| EFO:0004348 | hematocrit |
| EFO:0004509 | hemoglobin measurement |
| EFO:0005080 | CC16 measurement |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL5310 (SINGLE PROTEIN)
Molecules with ChEMBL bioactivity
21 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 65,103 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).
| Molecule | Name | Phase | Patents |
|---|---|---|---|
| CHEMBL1287853 | FEDRATINIB | 4 | 3,554 |
| CHEMBL2028663 | DABRAFENIB | 4 | 12,430 |
| CHEMBL502835 | NINTEDANIB | 4 | 8,545 |
| CHEMBL5416410 | DASATINIB | 4 | 655 |
| CHEMBL601719 | CRIZOTINIB | 4 | 14,403 |
| CHEMBL217092 | SARACATINIB | 3 | 3,982 |
| CHEMBL491473 | CEDIRANIB | 3 | 9,098 |
| CHEMBL603469 | LESTAURTINIB | 3 | |
| CHEMBL103667 | DORAMAPIMOD | 2 | 1,681 |
| CHEMBL2364611 | GALUNISERTIB | 2 | 1,929 |
| CHEMBL253969 | OSI-632 | 2 | 1,150 |
| CHEMBL3120215 | OSI-027 | 2 | 1,854 |
| CHEMBL3260567 | VACTOSERTIB | 2 | 898 |
| CHEMBL402548 | DANUSERTIB | 2 | 1,928 |
| CHEMBL475251 | R-406 | 2 | 762 |
| CHEMBL495727 | AT-9283 | 2 | 1,376 |
| CHEMBL5956963 | KER-047 | 2 | 16 |
| CHEMBL1090479 | GSK-1070916 | 1 | 177 |
| CHEMBL3600873 | MK-5108 | 1 | 14 |
| CHEMBL482967 | CYC-116 | 1 | 651 |
| CHEMBL5095192 | PF-06952229 | 1 |
PharmGKB: 1 entry (VIP=true, CPIC=false)
GtoPdb / IUPHAR curated pharmacology
(IUPHAR/BPS Guide to Pharmacology — expert-curated)
Target class: catalytic receptor — Type I receptor serine/threonine kinases
Most potent curated ligand interactions (5 total), top 5:
| Ligand | Action | Affinity | Parameter |
|---|---|---|---|
| vactosertib | Inhibition | 7.89 | pIC50 |
| BMS-986260 | Inhibition | 7.48 | pIC50 |
| galunisertib | Inhibition | 7.11 | pIC50 |
| compound 13r [PMID: 23639540] | Inhibition | 6.74 | pIC50 |
| compound 13d [PMID: 23639540] | Inhibition | 6.49 | pIC50 |
Binding affinities (BindingDB)
56 measured of 82 human assays (82 total across all organisms); most potent 50 below. Values come from heterogeneous assays and are not directly comparable.
| Ligand | Measure | Value | Patent |
|---|---|---|---|
| Staurosporine | KD | 1.7 nM | |
| 4-[6-[4-[(2R,6S)-2,6-dimethylpiperazin-1-yl]phenyl]pyrazolo[1,5-a]pyrimidin-3-yl]-2-methylquinoline | IC50 | 7.7 nM | US-9682983: BMP inhibitors and methods of use thereof |
| 5-[6-[4-[(2S,6R)-2,6-dimethylpiperazin-1-yl]phenyl]pyrazolo[1,5-a]pyrimidin-3-yl]quinoline | IC50 | 8 nM | US-9682983: BMP inhibitors and methods of use thereof |
| 4-(4-Fluorophenyl)-2-(4-hydroxyphenyl)-5-(4-pyridyl)-1H-imidazole | KD | 9.8 nM | |
| 4-[6-[4-[(2S,6R)-2,6-dimethylpiperazin-1-yl]phenyl]pyrazolo[1,5-a]pyrimidin-3-yl]quinoline | IC50 | 10 nM | US-9682983: BMP inhibitors and methods of use thereof |
| 4-[6-[4-[(1S,4S)-2,5-diazabicyclo[2.2.1]heptan-2-yl]phenyl]pyrazolo[1,5-a]pyrimidin-3-yl]quinoline | IC50 | 12 nM | US-9682983: BMP inhibitors and methods of use thereof |
| 4-[4-(4-fluorophenyl)-2-(4-methanesulfinylphenyl)-1H-imidazol-5-yl]pyridine | KD | 12 nM | |
| 5-[6-[6-(2-piperazin-1-ylethoxy)-3-pyridinyl]pyrazolo[1,5-a]pyrimidin-3-yl]quinoline | IC50 | 14 nM | US-9682983: BMP inhibitors and methods of use thereof |
| 4-[6-(3-fluoro-4-piperazin-1-ylphenyl)pyrazolo[1,5-a]pyrimidin-3-yl]quinoline | IC50 | 15 nM | US-9682983: BMP inhibitors and methods of use thereof |
| 4-[6-(5-piperazin-1-yl-2-pyridinyl)pyrazolo[1,5-a]pyrimidin-3-yl]quinoline | IC50 | 16 nM | US-9682983: BMP inhibitors and methods of use thereof |
| 5-piperazin-1-yl-2-(3-quinolin-4-ylpyrazolo[1,5-a]pyrimidin-6-yl)-1,3-thiazole | IC50 | 19 nM | US-9682983: BMP inhibitors and methods of use thereof |
| 4-[6-[6-[(2S,6R)-2,6-dimethylpiperazin-1-yl]-3-pyridinyl]pyrazolo[1,5-a]pyrimidin-3-yl]quinoline | IC50 | 22 nM | US-9682983: BMP inhibitors and methods of use thereof |
| 4-[6-[6-(2-piperazin-1-ylethoxy)-3-pyridinyl]pyrazolo[1,5-a]pyrimidin-3-yl]quinoline | IC50 | 22 nM | US-9682983: BMP inhibitors and methods of use thereof |
| 2-methyl-4-[6-(4-piperazin-1-ylphenyl)pyrazolo[1,5-a]pyrimidin-3-yl]quinoline | IC50 | 23 nM | US-9682983: BMP inhibitors and methods of use thereof |
| 2-methyl-4-[6-(4-piperidin-4-ylphenyl)pyrazolo[1,5-a]pyrimidin-3-yl]quinoline | IC50 | 23 nM | US-9682983: BMP inhibitors and methods of use thereof |
| 2-chloro-4-[6-(4-piperazin-1-ylphenyl)pyrazolo[1,5-a]pyrimidin-3-yl]quinoline | IC50 | 24 nM | US-9682983: BMP inhibitors and methods of use thereof |
| 2-piperazin-1-yl-5-(3-quinolin-4-ylpyrazolo[1,5-a]pyrimidin-6-yl)benzonitrile | IC50 | 24 nM | US-9682983: BMP inhibitors and methods of use thereof |
| 4-[6-(4-piperazin-1-ylphenyl)pyrazolo[1,5-a]pyrimidin-3-yl]quinoline-8-carboxamide | IC50 | 26 nM | US-9682983: BMP inhibitors and methods of use thereof |
| BMS-354825 | KD | 27 nM | |
| 4-[6-(6-piperazin-1-yl-3-pyridinyl)pyrazolo[1,5-a]pyrimidin-3-yl]quinoline | IC50 | 29 nM | US-9682983: BMP inhibitors and methods of use thereof |
| 4-[6-(3-chloro-4-piperazin-1-ylphenyl)pyrazolo[1,5-a]pyrimidin-3-yl]quinoline | IC50 | 30 nM | US-9682983: BMP inhibitors and methods of use thereof |
| US10017516, Compound 28 | IC50 | 31 nM | US-9682983: BMP inhibitors and methods of use thereof |
| 5-[6-(3-fluoro-4-piperazin-1-ylphenyl)pyrazolo[1,5-a]pyrimidin-3-yl]quinoline | IC50 | 32 nM | US-9682983: BMP inhibitors and methods of use thereof |
| 5-[6-[4-[(2R,6S)-2,6-dimethylpiperazin-1-yl]phenyl]pyrazolo[1,5-a]pyrimidin-3-yl]-2-methylquinoline | IC50 | 32 nM | US-9682983: BMP inhibitors and methods of use thereof |
| 5-[6-[4-(2-piperidin-1-ylethoxy)phenyl]pyrazolo[1,5-a]pyrimidin-3-yl]quinoline | IC50 | 38 nM | US-9682983: BMP inhibitors and methods of use thereof |
| 2-methyl-4-[6-(6-piperazin-1-yl-3-pyridinyl)pyrazolo[1,5-a]pyrimidin-3-yl]quinoline | IC50 | 43 nM | US-9682983: BMP inhibitors and methods of use thereof |
| 4-[6-(4-piperazin-1-ylphenyl)pyrazolo[1,5-a]pyrimidin-3-yl]quinolin-7-amine | IC50 | 44 nM | US-9682983: BMP inhibitors and methods of use thereof |
| 5-[6-(3-chloro-4-piperazin-1-ylphenyl)pyrazolo[1,5-a]pyrimidin-3-yl]quinoline | IC50 | 46 nM | US-9682983: BMP inhibitors and methods of use thereof |
| 2-piperazin-1-yl-5-(3-quinolin-5-ylpyrazolo[1,5-a]pyrimidin-6-yl)benzonitrile | IC50 | 47 nM | US-9682983: BMP inhibitors and methods of use thereof |
| 5-[6-[6-[(2R,6S)-2,6-dimethylpiperazin-1-yl]-3-pyridinyl]pyrazolo[1,5-a]pyrimidin-3-yl]quinoline | IC50 | 56 nM | US-9682983: BMP inhibitors and methods of use thereof |
| [4-[6-(4-piperazin-1-ylphenyl)pyrazolo[1,5-a]pyrimidin-3-yl]quinolin-8-yl]methanol | IC50 | 62 nM | US-9682983: BMP inhibitors and methods of use thereof |
| 4-[6-(3-piperazin-1-ylprop-1-ynyl)pyrazolo[1,5-a]pyrimidin-3-yl]quinoline | IC50 | 68 nM | US-9682983: BMP inhibitors and methods of use thereof |
| 2-methyl-5-[6-[5-(2-piperidin-1-ylethoxy)-2-pyridinyl]pyrazolo[1,5-a]pyrimidin-3-yl]quinoline | IC50 | 85 nM | US-9682983: BMP inhibitors and methods of use thereof |
| 2-methyl-5-[6-[5-[(3S)-pyrrolidin-3-yl]oxy-2-pyridinyl]pyrazolo[1,5-a]pyrimidin-3-yl]quinoline | IC50 | 102 nM | US-9682983: BMP inhibitors and methods of use thereof |
| 4-[6-(2-piperazin-1-ylpyrimidin-5-yl)pyrazolo[1,5-a]pyrimidin-3-yl]quinoline | IC50 | 103 nM | US-9682983: BMP inhibitors and methods of use thereof |
| N-[4-[6-(4-piperazin-1-ylphenyl)pyrazolo[1,5-a]pyrimidin-3-yl]quinolin-7-yl]acetamide | IC50 | 105 nM | US-9682983: BMP inhibitors and methods of use thereof |
| 5-[6-[4-(2-methyl-1-piperidin-1-ylpropan-2-yl)oxyphenyl]pyrazolo[1,5-a]pyrimidin-3-yl]quinoline | IC50 | 106 nM | US-9682983: BMP inhibitors and methods of use thereof |
| 2-methyl-5-[6-[5-(2-methyl-1-piperidin-1-ylpropan-2-yl)oxy-2-pyridinyl]pyrazolo[1,5-a]pyrimidin-3-yl]quinoline | IC50 | 107 nM | US-9682983: BMP inhibitors and methods of use thereof |
| 4-[6-[6-[2-(4-methylpiperazin-1-yl)ethoxy]-3-pyridinyl]pyrazolo[1,5-a]pyrimidin-3-yl]quinoline | IC50 | 122 nM | US-9682983: BMP inhibitors and methods of use thereof |
| 4-[6-(4-piperazin-1-ylphenyl)pyrazolo[1,5-a]pyrimidin-3-yl]quinoline-7-carboxamide | IC50 | 127 nM | US-9682983: BMP inhibitors and methods of use thereof |
| 2-methyl-5-[6-[5-(1-methylpiperidin-4-yl)oxy-2-pyridinyl]pyrazolo[1,5-a]pyrimidin-3-yl]quinoline | IC50 | 155 nM | US-9682983: BMP inhibitors and methods of use thereof |
| 5-[6-[4-[(2R,6S)-2,6-dimethylpiperazin-1-yl]phenyl]pyrazolo[1,5-a]pyrimidin-3-yl]-2-methoxyquinoline | IC50 | 157 nM | US-9682983: BMP inhibitors and methods of use thereof |
| 2-methyl-5-[6-(5-piperidin-4-yloxy-2-pyridinyl)pyrazolo[1,5-a]pyrimidin-3-yl]quinoline | IC50 | 180 nM | US-9682983: BMP inhibitors and methods of use thereof |
| 4-(4-(benzo[d][1,3]dioxol-5-yl)-5-(pyridin-2-yl)-1H-imidazol-2-yl)benzamide | KD | 190 nM | |
| 2-methyl-5-[6-[5-[(3R)-pyrrolidin-3-yl]oxy-2-pyridinyl]pyrazolo[1,5-a]pyrimidin-3-yl]quinoline | IC50 | 276 nM | US-9682983: BMP inhibitors and methods of use thereof |
| 4-[6-(4-piperidin-4-ylphenyl)pyrazolo[1,5-a]pyrimidin-3-yl]quinoline | IC50 | 677 nM | US-9682983: BMP inhibitors and methods of use thereof |
| 2-(5-chloro-2-fluorophenyl)-5-(propan-2-yl)-N-{7H-pyrrolo[2,3-d]pyrimidin-4-yl}pyridin-4-amine | IC50 | 5450 nM | US-10030004: Compounds and methods of use |
| 2-(5-chloro-2-fluorophenyl)-5-cyclopropyl-N-{1H-pyrrolo[2,3-b]pyridin-4-yl}pyridin-4-amine | IC50 | 5840 nM | US-10030004: Compounds and methods of use |
| 2-(5-chloro-2-fluorophenyl)-5-(propan-2-yl)-N-{1H-pyrazolo[3,4-d]pyrimidin-4-yl}pyridin-4-amine | IC50 | 8930 nM | US-10030004: Compounds and methods of use |
| (S)-4-(2-(5-chloro-2-fluorophenyl)-5-isopropylpyridin-4-ylamino)-N-(2-hydroxypropyl)pyrimidine-5-carboxamide | IC50 | 9970 nM | US-10030004: Compounds and methods of use |
ChEMBL bioactivities
253 potent at pChembl≥5 of 300 total, top 50 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 9.00 | Kd | 1 | nM | CHEMBL400402 |
| 8.68 | IC50 | 2.1 | nM | CHEMBL5591770 |
| 8.57 | IC50 | 2.7 | nM | CHEMBL5897331 |
| 8.43 | IC50 | 3.7 | nM | CHEMBL5813038 |
| 8.43 | IC50 | 3.7 | nM | CHEMBL5903130 |
| 8.40 | Kd | 4 | nM | OSI-632 |
| 8.33 | IC50 | 4.7 | nM | CHEMBL5595138 |
| 8.32 | IC50 | 4.8 | nM | CHEMBL5818729 |
| 8.07 | IC50 | 8.6 | nM | CHEMBL5288333 |
| 8.00 | IC50 | 10 | nM | VACTOSERTIB |
| 8.00 | Kd | 10 | nM | CHEMBL1908395 |
| 7.98 | IC50 | 10.5 | nM | CHEMBL5818096 |
| 7.96 | IC50 | 11 | nM | CHEMBL6036046 |
| 7.94 | IC50 | 11.5 | nM | CHEMBL5995233 |
| 7.93 | IC50 | 11.7 | nM | CHEMBL5290769 |
| 7.89 | IC50 | 13 | nM | VACTOSERTIB |
| 7.89 | IC50 | 13 | nM | CHEMBL4548795 |
| 7.89 | IC50 | 13 | nM | CHEMBL5922079 |
| 7.89 | IC50 | 13 | nM | CHEMBL5983777 |
| 7.80 | Kd | 16 | nM | GALUNISERTIB |
| 7.76 | IC50 | 17.2 | nM | VACTOSERTIB |
| 7.75 | IC50 | 18 | nM | CHEMBL1829511 |
| 7.64 | IC50 | 23 | nM | CHEMBL492634 |
| 7.63 | IC50 | 23.5 | nM | CHEMBL6025407 |
| 7.62 | IC50 | 23.7 | nM | CHEMBL5800993 |
| 7.60 | Kd | 25.14 | nM | CHEMBL5653589 |
| 7.60 | IC50 | 25 | nM | CHEMBL5989551 |
| 7.57 | IC50 | 27 | nM | CHEMBL5083143 |
| 7.52 | IC50 | 30.4 | nM | CHEMBL5768318 |
| 7.51 | IC50 | 31 | nM | CHEMBL3818173 |
| 7.50 | IC50 | 31.5 | nM | CHEMBL5957596 |
| 7.49 | IC50 | 32.5 | nM | CHEMBL5289691 |
| 7.48 | IC50 | 33.1 | nM | CHEMBL5791864 |
| 7.48 | IC50 | 33.1 | nM | CHEMBL5749427 |
| 7.46 | IC50 | 34.6 | nM | CHEMBL6172244 |
| 7.40 | IC50 | 40.1 | nM | CHEMBL5761663 |
| 7.40 | IC50 | 40.2 | nM | CHEMBL5972400 |
| 7.37 | IC50 | 42.4 | nM | CHEMBL5768693 |
| 7.36 | IC50 | 43.29 | nM | CHEMBL513147 |
| 7.35 | IC50 | 45.1 | nM | CHEMBL5285430 |
| 7.34 | IC50 | 46 | nM | CHEMBL424676 |
| 7.25 | IC50 | 56.7 | nM | PF-06952229 |
| 7.24 | IC50 | 57 | nM | PF-06952229 |
| 7.24 | Kd | 58 | nM | CHEMBL1241674 |
| 7.23 | IC50 | 59 | nM | CHEMBL2024684 |
| 7.23 | ED50 | 59.12 | nM | CHEMBL5653589 |
| 7.16 | IC50 | 70 | nM | CHEMBL226838 |
| 7.12 | Kd | 75.42 | nM | CHEMBL3752910 |
| 7.07 | Kd | 86 | nM | LESTAURTINIB |
| 7.06 | IC50 | 86.8 | nM | CHEMBL5857202 |
PubChem BioAssay actives
94 with measured affinity, of 1101 total; 50 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| 4-chloro-3-[5-methyl-3-[4-(2-pyrrolidin-1-ylethoxy)anilino]-1,2,4-benzotriazin-7-yl]phenol | 1424901: Kinobeads (epsilon), multiple immobilized ATP-competitive broad spectrum kinase inhibitors, used to assess residual binding of ~300 proteins simultaneously from cell lysate in the presence of a compound. Quantitative readout performed by mass spectrometry. | kd | 0.0010 | uM |
| 5-(4-acetyl-1H-pyrrol-2-yl)-2-[cyclopropyl-[1-(3-methoxy-4-pyridinyl)pyrazol-4-yl]amino]-1,3-thiazole-4-carboxamide | 2112254: Inhibition of ALK4 (unknown origin) by TR-FRET assay | ic50 | 0.0021 | uM |
| 3-[(4-bromo-2,6-difluorophenyl)methoxy]-5-(4-pyrrolidin-1-ylbutylcarbamoylamino)-1,2-thiazole-4-carboxamide | 1424901: Kinobeads (epsilon), multiple immobilized ATP-competitive broad spectrum kinase inhibitors, used to assess residual binding of ~300 proteins simultaneously from cell lysate in the presence of a compound. Quantitative readout performed by mass spectrometry. | kd | 0.0040 | uM |
| 5-(4-acetyl-1H-pyrrol-2-yl)-2-[cyclopropyl-[1-[3-(hydroxymethyl)-4-pyridinyl]pyrazol-4-yl]amino]-1,3-thiazole-4-carboxamide | 2112254: Inhibition of ALK4 (unknown origin) by TR-FRET assay | ic50 | 0.0047 | uM |
| 5-cyano-N-[2-(cyclohexen-1-yl)-4-[1-[2-(dimethylamino)acetyl]piperidin-4-yl]phenyl]-1H-imidazole-2-carboxamide;hydrochloride | 624943: Binding constant for ACVR1B kinase domain | kd | 0.0100 | uM |
| 2-fluoro-N-[[5-(6-methyl-2-pyridinyl)-4-([1,2,4]triazolo[1,5-a]pyridin-6-yl)-1H-imidazol-2-yl]methyl]aniline | 1142609: Inhibition of ALK4 (unknown origin) by radioisotopic assay | ic50 | 0.0130 | uM |
| 4-[2-(6-methyl-2-pyridinyl)-5,6-dihydro-4H-pyrrolo[1,2-b]pyrazol-3-yl]quinoline-6-carboxamide | 1424901: Kinobeads (epsilon), multiple immobilized ATP-competitive broad spectrum kinase inhibitors, used to assess residual binding of ~300 proteins simultaneously from cell lysate in the presence of a compound. Quantitative readout performed by mass spectrometry. | kd | 0.0160 | uM |
| N,N-dimethyl-3-[[5-[4-(5-pyridin-2-yl-1H-pyrazol-4-yl)-2-pyridinyl]-2-pyridinyl]oxy]propan-1-amine | 618730: Inhibition of Activin A in human HEK293 cells transfected with luciferase and FAST-2 gene expression vector A3-LUX after 16 hrs by luciferase reporter gene assay | ic50 | 0.0180 | uM |
| 3-[[5-(6-methyl-2-pyridinyl)-4-quinoxalin-6-yl-1H-imidazol-2-yl]methyl]benzamide | 1142609: Inhibition of ALK4 (unknown origin) by radioisotopic assay | ic50 | 0.0230 | uM |
| 4-methyl-3-[(2-methyl-6-pyridin-3-ylpyrazolo[3,4-d]pyrimidin-4-yl)amino]-N-[3-(trifluoromethyl)phenyl]benzamide | 2147801: Binding affinity to human ACVR1B incubated for 45 mins by Kinobead based pull down assay | kd | 0.0251 | uM |
| 4-[6-(4-piperazin-1-ylphenyl)pyrazolo[1,5-a]pyrimidin-3-yl]quinoline | 1431778: Inhibition of human ALK4 using casein as substrate in presence of 10 uM ATP by radiometric kinase assay | ic50 | 0.0433 | uM |
| N,N-dimethyl-2-[4-[4-(5-pyridin-2-yl-1H-pyrazol-4-yl)-2-pyridinyl]phenoxy]ethanamine | 618730: Inhibition of Activin A in human HEK293 cells transfected with luciferase and FAST-2 gene expression vector A3-LUX after 16 hrs by luciferase reporter gene assay | ic50 | 0.0460 | uM |
| 4-[[2-(5-chloro-2-fluorophenyl)-5-propan-2-yl-4-pyridinyl]amino]-N-(1,3-dihydroxypropan-2-yl)pyridine-3-carboxamide | 1921886: Inhibition of ALK4 (unknown origin) | ic50 | 0.0570 | uM |
| 2-(4-amino-1-propan-2-ylpyrazolo[3,4-d]pyrimidin-3-yl)-1H-indol-5-ol | 624943: Binding constant for ACVR1B kinase domain | kd | 0.0580 | uM |
| 3-methyl-6-[2-(6-methyl-2-pyridinyl)pyrazol-3-yl]quinazolin-4-one | 658824: Inhibition of ALK4 | ic50 | 0.0590 | uM |
| 2-[4-(1,3-benzodioxol-5-yl)-2-tert-butyl-1H-imidazol-5-yl]-6-methylpyridine | 1142609: Inhibition of ALK4 (unknown origin) by radioisotopic assay | ic50 | 0.0700 | uM |
| 4-methyl-3-[(1-methyl-6-pyridin-3-ylpyrazolo[3,4-d]pyrimidin-4-yl)amino]-N-[3-(trifluoromethyl)phenyl]benzamide | 2147801: Binding affinity to human ACVR1B incubated for 45 mins by Kinobead based pull down assay | kd | 0.0754 | uM |
| (15S,16S,18R)-16-hydroxy-16-(hydroxymethyl)-15-methyl-28-oxa-4,14,19-triazaoctacyclo[12.11.2.115,18.02,6.07,27.08,13.019,26.020,25]octacosa-1,6,8,10,12,20,22,24,26-nonaen-3-one | 507820: Binding affinity to ACVR1B | kd | 0.0860 | uM |
| 6-(2,6-dichlorophenyl)-8-methyl-2-(3-methylsulfanylanilino)pyrido[2,3-d]pyrimidin-7-one | 624943: Binding constant for ACVR1B kinase domain | kd | 0.0960 | uM |
| 5-chloro-2-N-[2-methoxy-4-[4-(4-methylpiperazin-1-yl)piperidin-1-yl]phenyl]-4-N-(2-propan-2-ylsulfonylphenyl)pyrimidine-2,4-diamine | 624943: Binding constant for ACVR1B kinase domain | kd | 0.0970 | uM |
| N-[4-[3-[5-(trideuteriomethoxy)-2-pyridinyl]-1H-pyrrolo[3,2-b]pyridin-2-yl]-2-pyridinyl]acetamide | 1423813: Inhibition of ALK4 (unknown origin) | ic50 | 0.1000 | uM |
| N-[4-[3-[6-(difluoromethyl)-2-pyridinyl]-1H-pyrrolo[3,2-b]pyridin-2-yl]-2-pyridinyl]acetamide | 1423813: Inhibition of ALK4 (unknown origin) | ic50 | 0.1000 | uM |
| 1-methyl-4-[5-[4-(5-pyridin-2-yl-1H-pyrazol-4-yl)-2-pyridinyl]-2-pyridinyl]piperazine | 618730: Inhibition of Activin A in human HEK293 cells transfected with luciferase and FAST-2 gene expression vector A3-LUX after 16 hrs by luciferase reporter gene assay | ic50 | 0.1080 | uM |
| N-(5-chloro-1,3-benzodioxol-4-yl)-7-[2-(4-methylpiperazin-1-yl)ethoxy]-5-(oxan-4-yloxy)quinazolin-4-amine | 1424901: Kinobeads (epsilon), multiple immobilized ATP-competitive broad spectrum kinase inhibitors, used to assess residual binding of ~300 proteins simultaneously from cell lysate in the presence of a compound. Quantitative readout performed by mass spectrometry. | kd | 0.1420 | uM |
| 4-[4-(1,3-benzodioxol-5-yl)-5-pyridin-2-yl-1H-imidazol-2-yl]benzoic acid | 1758206: Inhibition of human ALK4 using ATP as substrate incubated for 60 mins by ADP-glo based luminescence assay | ic50 | 0.1580 | uM |
| 4-[6-(1-methylpyrazol-4-yl)pyrazolo[1,5-a]pyrimidin-3-yl]-N-(2,2,2-trifluoroethyl)thiophene-2-carboxamide | 1637051: Inhibition of recombinant human GST-tagged ALK4 catalytic domain expressed in baculovirus expression system by Z’-LYTE assay | ic50 | 0.1700 | uM |
| 4-[6-[4-(4-methylpiperazin-1-yl)phenyl]pyrazolo[1,5-a]pyrimidin-3-yl]quinoline | 750129: Inhibition of ALK4 (unknown origin) | ic50 | 0.1830 | uM |
| 4-[4-(1,3-benzodioxol-5-yl)-5-pyridin-2-yl-1H-imidazol-2-yl]benzamide | 435898: Binding constant for ACVR1B kinase domain | kd | 0.1900 | uM |
| 2-methyl-4-[7-(4-piperazin-2-ylphenyl)imidazo[1,2-a]pyridin-3-yl]quinoline | 1722085: Inhibition of human ALK4 using casein as substrate by [gamma-33P]-ATP assay | ic50 | 0.1920 | uM |
| 1-[6-(3,5-dichloro-4-hydroxyphenyl)-4-[[4-[(dimethylamino)methyl]cyclohexyl]amino]-1,5-naphthyridin-3-yl]ethanone | 1424901: Kinobeads (epsilon), multiple immobilized ATP-competitive broad spectrum kinase inhibitors, used to assess residual binding of ~300 proteins simultaneously from cell lysate in the presence of a compound. Quantitative readout performed by mass spectrometry. | kd | 0.1950 | uM |
| 4-[6-[4-(2-piperidin-1-ylethoxy)phenyl]pyrazolo[1,5-a]pyrimidin-3-yl]-N-(2,2,2-trifluoroethyl)thiophene-2-carboxamide | 1637051: Inhibition of recombinant human GST-tagged ALK4 catalytic domain expressed in baculovirus expression system by Z’-LYTE assay | ic50 | 0.2000 | uM |
| 2-(1-methylpyrazol-4-yl)-4-(5-pyridin-2-yl-1H-pyrazol-4-yl)pyridine | 618730: Inhibition of Activin A in human HEK293 cells transfected with luciferase and FAST-2 gene expression vector A3-LUX after 16 hrs by luciferase reporter gene assay | ic50 | 0.2240 | uM |
| 3-(4-piperazin-1-ylphenyl)-5-(3,4,5-trimethoxyphenyl)pyridine-4-carbonitrile | 1665311: Inhibition of human ALK4 using casein as substrate in presence of [gamma-33P]-ATP by radiometric hotspot assay | ic50 | 0.2570 | uM |
| 3-(2-methylquinolin-4-yl)-6-(4-piperazin-1-ylphenyl)furo[3,2-b]pyridine | 2113167: Inhibition of human ALK4 using casein as substrate in presence of [gamma-33P]ATP and 10 uM ATP by radiometric assay | ic50 | 0.2860 | uM |
| 4-[4-(3-quinolin-4-ylpyrazolo[1,5-a]pyrimidin-6-yl)phenyl]morpholine | 750129: Inhibition of ALK4 (unknown origin) | ic50 | 0.3260 | uM |
| N-(2-chloro-6-methylphenyl)-2-[[6-[4-(2-hydroxyethyl)piperazin-1-yl]-2-methylpyrimidin-4-yl]amino]-1,3-thiazole-5-carboxamide;hydrate | 435898: Binding constant for ACVR1B kinase domain | kd | 0.3300 | uM |
| 6-(4-piperazin-1-ylphenyl)-3-[2-(trifluoromethyl)quinolin-4-yl]furo[3,2-b]pyridine | 2113167: Inhibition of human ALK4 using casein as substrate in presence of [gamma-33P]ATP and 10 uM ATP by radiometric assay | ic50 | 0.3860 | uM |
| 6,8-difluoro-2-methyl-4-[7-(4-piperazin-2-ylphenyl)imidazo[1,2-a]pyridin-3-yl]quinoline | 1722085: Inhibition of human ALK4 using casein as substrate by [gamma-33P]-ATP assay | ic50 | 0.3900 | uM |
| 1-[4-[5-(3,4,5-trimethoxyphenyl)-3-pyridinyl]phenyl]piperazine | 1665311: Inhibition of human ALK4 using casein as substrate in presence of [gamma-33P]-ATP by radiometric hotspot assay | ic50 | 0.4620 | uM |
| 2-methyl-4-[7-(4-piperazin-1-ylphenyl)imidazo[1,2-a]pyridin-3-yl]quinoline | 1722085: Inhibition of human ALK4 using casein as substrate by [gamma-33P]-ATP assay | ic50 | 0.4640 | uM |
| N-[5-[(2R)-2-methoxy-2-phenylacetyl]-4,6-dihydro-1H-pyrrolo[3,4-d]pyrazol-3-yl]-4-(4-methylpiperazin-1-yl)benzamide | 1424901: Kinobeads (epsilon), multiple immobilized ATP-competitive broad spectrum kinase inhibitors, used to assess residual binding of ~300 proteins simultaneously from cell lysate in the presence of a compound. Quantitative readout performed by mass spectrometry. | kd | 0.5240 | uM |
| 4-[4-amino-5-(7-methoxy-1H-indol-2-yl)imidazo[5,1-f][1,2,4]triazin-7-yl]cyclohexane-1-carboxylic acid | 1424901: Kinobeads (epsilon), multiple immobilized ATP-competitive broad spectrum kinase inhibitors, used to assess residual binding of ~300 proteins simultaneously from cell lysate in the presence of a compound. Quantitative readout performed by mass spectrometry. | kd | 0.5490 | uM |
| 6-fluoro-2-methyl-4-[7-(4-piperazin-1-ylphenyl)imidazo[1,2-a]pyridin-3-yl]quinoline | 1722085: Inhibition of human ALK4 using casein as substrate by [gamma-33P]-ATP assay | ic50 | 0.5687 | uM |
| 6,8-difluoro-2-methyl-4-[7-(4-piperazin-1-ylphenyl)imidazo[1,2-a]pyridin-3-yl]quinoline | 1722085: Inhibition of human ALK4 using casein as substrate by [gamma-33P]-ATP assay | ic50 | 0.5961 | uM |
| Dabrafenib | 1424901: Kinobeads (epsilon), multiple immobilized ATP-competitive broad spectrum kinase inhibitors, used to assess residual binding of ~300 proteins simultaneously from cell lysate in the presence of a compound. Quantitative readout performed by mass spectrometry. | kd | 0.6010 | uM |
| 1-[4-[4-fluoro-5-(3,4,5-trimethoxyphenyl)-3-pyridinyl]phenyl]piperazine | 1665311: Inhibition of human ALK4 using casein as substrate in presence of [gamma-33P]-ATP by radiometric hotspot assay | ic50 | 0.6300 | uM |
| (2S,3R,4R,6R)-3-methoxy-2-methyl-4-(methylamino)-29-oxa-1,7,17-triazaoctacyclo[12.12.2.12,6.07,28.08,13.015,19.020,27.021,26]nonacosa-8,10,12,14,19,21,23,25,27-nonaen-16-one | 435898: Binding constant for ACVR1B kinase domain | kd | 0.6800 | uM |
| 2,5-dimethyl-6-quinolin-4-yl-3H-quinazolin-4-one | 1399005: Binding affinity to human ALK4 by KdELECT assay | kd | 0.6900 | uM |
| N-[(1R,2S)-2-aminocyclohexyl]-4-[6-(1-methylpyrazol-4-yl)pyrazolo[1,5-a]pyrimidin-3-yl]thiophene-2-carboxamide | 1637051: Inhibition of recombinant human GST-tagged ALK4 catalytic domain expressed in baculovirus expression system by Z’-LYTE assay | ic50 | 0.7300 | uM |
| 3-(2-methyl-1,3-benzoxazol-5-yl)-1-propan-2-ylpyrazolo[3,4-d]pyrimidin-4-amine | 1424901: Kinobeads (epsilon), multiple immobilized ATP-competitive broad spectrum kinase inhibitors, used to assess residual binding of ~300 proteins simultaneously from cell lysate in the presence of a compound. Quantitative readout performed by mass spectrometry. | kd | 0.7670 | uM |
CTD chemical–gene interactions
29 total (human), top 29 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Cadmium | increases expression, affects reaction, increases abundance, increases phosphorylation | 2 |
| Cadmium Chloride | increases phosphorylation, increases expression, affects reaction, increases abundance | 2 |
| Particulate Matter | increases expression | 2 |
| bufotalin | increases expression | 1 |
| arsenite | increases methylation | 1 |
| nickel sulfate | increases expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| imeglimin | increases expression | 1 |
| Vorinostat | decreases expression | 1 |
| Leflunomide | increases expression | 1 |
| Acetaminophen | decreases expression | 1 |
| Ethanol | increases expression | 1 |
| Amiodarone | increases expression | 1 |
| Arsenic | affects expression | 1 |
| Vehicle Emissions | increases expression | 1 |
| Benzo(a)pyrene | increases methylation | 1 |
| Camptothecin | increases methylation | 1 |
| Carbamazepine | affects expression | 1 |
| Diclofenac | affects expression | 1 |
| Dust | decreases expression | 1 |
| Ethinyl Estradiol | decreases expression | 1 |
| Naled | affects expression | 1 |
| Phthalic Acids | increases methylation | 1 |
| Smoke | decreases expression | 1 |
| Tobacco Smoke Pollution | increases methylation | 1 |
| Urethane | increases expression | 1 |
| Valproic Acid | affects expression | 1 |
| Tacrolimus | affects binding, decreases reaction, decreases ubiquitination, decreases activity, increases reaction | 1 |
| Uranium Compounds | decreases expression | 1 |
ChEMBL screening assays
286 unique, capped per target: 282 binding, 3 admet, 1 functional
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL1032239 | Binding | Inhibition of ACVR1B at 3 uM | Discovery of substituted 4-(pyrazol-4-yl)-phenylbenzodioxane-2-carboxamides as potent and highly selective Rho kinase (ROCK-II) inhibitors. — J Med Chem |
| CHEMBL3998848 | ADMET | Inhibition of human ALK4 using casein as substrate in presence of 10 uM ATP by radiometric kinase assay | Identification of the First Selective Activin Receptor-Like Kinase 1 Inhibitor, a Reversible Version of L-783277. — J Med Chem |
| CHEMBL5445953 | Functional | Affinity Phenotypic Cellular interaction: (Western Blot (TGFxcexb2-induced phosphorylation of Smad3 in 4T1 cells)) EUB0000041b ACVR1B | Affinity Phenotypic Cellular Literature for EUbOPEN Chemogenomic Library |
Cellosaurus cell lines
9 cell lines: 9 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_A9WJ | CTSC#18 | Cancer cell line | Female |
| CVCL_A9WW | CTSC#446 | Cancer cell line | Female |
| CVCL_B8AU | Abcam HCT 116 ACVR1B KO | Cancer cell line | Male |
| CVCL_B8S5 | Abcam MCF-7 ACVR1B KO | Cancer cell line | Female |
| CVCL_B9CW | Abcam A-549 ACVR1B KO | Cancer cell line | Male |
| CVCL_B9WA | Abcam THP-1 ACVR1B KO | Cancer cell line | Male |
| CVCL_D8H2 | Ubigene HCT 116 ACVR1B KO | Cancer cell line | Male |
| CVCL_SB32 | HAP1 ACVR1B (-) | Cancer cell line | Male |
| CVCL_ZG09 | CLC48 | Cancer cell line | Male |
Clinical trials (associated diseases)
302 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00280709 | PHASE4 | COMPLETED | Biliary Metal Stent Study: Metal Stents for Management of Distal Malignant Biliary Obstruction |
| NCT00365508 | PHASE4 | COMPLETED | Counseling and Nicotine Replacement Therapy in Helping Adult Smokers Quit Smoking |
| NCT00558155 | PHASE4 | COMPLETED | The Impact of Immunostimulating Nutrition on the Outcome of Surgery |
| NCT00576940 | PHASE4 | COMPLETED | Standard and Immunostimulating Enteral Nutrition in Surgical Patients |
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Related Atlas pages
- Associated diseases: malignant pancreatic neoplasm
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): dextro-looped transposition of the great arteries, exocrine pancreatic carcinoma, malignant pancreatic neoplasm, presbycusis