ACVR2B
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Also known as ActR-IIB
Summary
ACVR2B (activin A receptor type 2B, HGNC:174) is a protein-coding gene on chromosome 3p22.2, encoding Activin receptor type-2B (Q13705). Transmembrane serine/threonine kinase activin type-2 receptor forming an activin receptor complex with activin type-1 serine/threonine kinase receptors (ACVR1, ACVR1B or ACVR1c).
Activins are dimeric growth and differentiation factors which belong to the transforming growth factor-beta (TGF-beta) superfamily of structurally related signaling proteins. Activins signal through a heteromeric complex of receptor serine kinases which include at least two type I (I and IB) and two type II (II and IIB) receptors. These receptors are all transmembrane proteins, composed of a ligand-binding extracellular domain with cysteine-rich region, a transmembrane domain, and a cytoplasmic domain with predicted serine/threonine specificity. Type I receptors are essential for signaling; and type II receptors are required for binding ligands and for expression of type I receptors. Type I and II receptors form a stable complex after ligand binding, resulting in phosphorylation of type I receptors by type II receptors. Type II receptors are considered to be constitutively active kinases. This gene encodes activin A type IIB receptor, which displays a 3- to 4-fold higher affinity for the ligand than activin A type II receptor.
Source: NCBI Gene 93 — RefSeq curated summary.
At a glance
- Gene–disease (curated): heterotaxy, visceral, 4, autosomal (Strong, GenCC)
- GWAS associations: 5
- Clinical variants (ClinVar): 381 total — 2 likely-pathogenic
- Phenotypes (HPO): 17
- Druggable target: yes — 12 molecules with ChEMBL bioactivity
- MANE Select transcript:
NM_001106
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:174 |
| Approved symbol | ACVR2B |
| Name | activin A receptor type 2B |
| Location | 3p22.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | ActR-IIB |
| Ensembl gene | ENSG00000114739 |
| Ensembl biotype | protein_coding |
| OMIM | 602730 |
| Entrez | 93 |
Gene structure
Transcript identifiers
Ensembl transcripts: 4 — 2 protein_coding, 2 retained_intron
ENST00000352511, ENST00000461232, ENST00000465020, ENST00000922132
RefSeq mRNA: 1 — MANE Select: NM_001106
NM_001106
CCDS: CCDS2679
Canonical transcript exons
ENST00000352511 — 11 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001861259 | 38453890 | 38454374 |
| ENSE00003484673 | 38477287 | 38477494 |
| ENSE00003500317 | 38482198 | 38482336 |
| ENSE00003530637 | 38478375 | 38478518 |
| ENSE00003549324 | 38479128 | 38479271 |
| ENSE00003580976 | 38482430 | 38482560 |
| ENSE00003586220 | 38481351 | 38481465 |
| ENSE00003604962 | 38479678 | 38479826 |
| ENSE00003648414 | 38478141 | 38478292 |
| ENSE00003657582 | 38477861 | 38477970 |
| ENSE00003676114 | 38483138 | 38493142 |
Expression profiles
Bgee: expression breadth ubiquitous, 248 present calls, max score 96.45.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 6.8621 / max 97.0665, expressed in 1238 samples.
FANTOM5 promoters (3 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 36104 | 4.4729 | 1096 |
| 36105 | 1.9964 | 593 |
| 202725 | 0.3928 | 199 |
Top tissues by expression
289 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| secondary oocyte | CL:0000655 | 96.45 | gold quality |
| oocyte | CL:0000023 | 93.10 | gold quality |
| ganglionic eminence | UBERON:0004023 | 88.03 | gold quality |
| endothelial cell | CL:0000115 | 87.72 | gold quality |
| parotid gland | UBERON:0001831 | 86.84 | silver quality |
| ventricular zone | UBERON:0003053 | 86.40 | gold quality |
| skeletal muscle tissue of biceps brachii | UBERON:0004502 | 85.80 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 85.33 | gold quality |
| biceps brachii | UBERON:0001507 | 85.30 | gold quality |
| pigmented layer of retina | UBERON:0001782 | 85.09 | gold quality |
| lateral nuclear group of thalamus | UBERON:0002736 | 84.42 | silver quality |
| skeletal muscle tissue of rectus abdominis | UBERON:0004511 | 83.85 | silver quality |
| lateral globus pallidus | UBERON:0002476 | 83.73 | gold quality |
| embryo | UBERON:0000922 | 83.53 | gold quality |
| subthalamic nucleus | UBERON:0001906 | 83.40 | silver quality |
| cortical plate | UBERON:0005343 | 83.20 | gold quality |
| heart right ventricle | UBERON:0002080 | 83.16 | silver quality |
| bronchial epithelial cell | CL:0002328 | 83.03 | gold quality |
| paraflocculus | UBERON:0005351 | 82.99 | silver quality |
| substantia nigra pars reticulata | UBERON:0001966 | 82.97 | silver quality |
| globus pallidus | UBERON:0001875 | 82.69 | gold quality |
| ventral tegmental area | UBERON:0002691 | 82.52 | gold quality |
| endometrium epithelium | UBERON:0004811 | 82.25 | gold quality |
| medial globus pallidus | UBERON:0002477 | 82.18 | gold quality |
| inferior vagus X ganglion | UBERON:0005363 | 82.13 | gold quality |
| caput epididymis | UBERON:0004358 | 82.07 | gold quality |
| superior vestibular nucleus | UBERON:0007227 | 81.88 | gold quality |
| middle temporal gyrus | UBERON:0002771 | 81.87 | silver quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 81.71 | gold quality |
| body of tongue | UBERON:0011876 | 81.63 | silver quality |
Single-cell (SCXA)
Detected in 2 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-GEOD-100618 | yes | 2008.50 |
| E-ANND-3 | no | 4.73 |
Regulation
Is transcription factor: yes
Downstream targets (CollecTRI)
1 targets.
| Target | Regulation |
|---|---|
| HAMP | Repression |
miRNA regulators (miRDB)
451 targeting ACVR2B, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-5011-5P | 100.00 | 83.46 | 5820 |
| HSA-MIR-6867-5P | 100.00 | 82.21 | 3464 |
| HSA-MIR-190A-3P | 100.00 | 80.35 | 5520 |
| HSA-MIR-4262 | 100.00 | 73.26 | 3931 |
| HSA-MIR-4795-3P | 100.00 | 74.62 | 4024 |
| HSA-MIR-98-3P | 100.00 | 74.08 | 3907 |
| HSA-LET-7A-3P | 100.00 | 74.03 | 3932 |
| HSA-LET-7B-3P | 100.00 | 74.08 | 3913 |
| HSA-LET-7F-1-3P | 100.00 | 74.02 | 3928 |
| HSA-MIR-1277-5P | 100.00 | 73.95 | 5056 |
| HSA-MIR-8485 | 100.00 | 77.57 | 4731 |
| HSA-MIR-5692A | 100.00 | 74.40 | 6850 |
| HSA-MIR-4476 | 100.00 | 68.18 | 2030 |
| HSA-MIR-6876-5P | 100.00 | 67.68 | 2126 |
| HSA-MIR-126-5P | 100.00 | 72.71 | 3180 |
| HSA-MIR-29A-3P | 100.00 | 73.11 | 1835 |
| HSA-MIR-29B-3P | 100.00 | 73.18 | 1833 |
| HSA-MIR-29C-3P | 100.00 | 73.15 | 1833 |
| HSA-MIR-5692B | 100.00 | 71.32 | 2622 |
| HSA-MIR-5692C | 100.00 | 71.32 | 2622 |
| HSA-MIR-200B-3P | 100.00 | 73.31 | 2693 |
| HSA-MIR-200C-3P | 100.00 | 73.35 | 2685 |
| HSA-MIR-429 | 100.00 | 73.44 | 2698 |
| HSA-MIR-3925-3P | 100.00 | 69.95 | 1237 |
| HSA-MIR-6798-5P | 100.00 | 65.77 | 699 |
| HSA-MIR-3613-3P | 100.00 | 76.36 | 7965 |
| HSA-MIR-181C-5P | 99.99 | 72.95 | 2996 |
| HSA-MIR-181A-5P | 99.99 | 72.96 | 2995 |
| HSA-MIR-181B-5P | 99.99 | 72.97 | 2996 |
| HSA-MIR-181D-5P | 99.99 | 73.04 | 2997 |
Literature-anchored findings (GeneRIF, showing 26)
- distribution in gestational tissues across human pregnancy and during labour (PMID:11969340)
- analysis of expression and cellular compartmentalization of the activin receptors ActRIIA, ActRIIB and ActRIB, the inhibin co-receptor (betaglycan), and activin signaling proteins Smads 2, 3 and 4, and growth regulatory role during lactation (PMID:12782414)
- Data indicate that activin A and activin receptors IIA and IIB may be involved in the regulation of germ cell proliferation in the human ovary during the period leading up to primordial follicle formation. (PMID:14738881)
- activin signaling via type II receptors requires a specific sequence for ALK4 binding (PMID:15123686)
- These results indicate that haplotype structure at the ACVR2B and follistatin loci may contribute to interindividual variation in skeletal muscle mass and strength, although these data indicate sex-specific relationships. (PMID:17347381)
- The high-resolution structure of human ActRIIB kinase domain in complex with adenine establishes the conserved bilobal architecture consistent with all other catalytic kinase domains. (PMID:17893364)
- Inhibition of negative regulators of skeletal muscle by a soluble form of activin type IIB receptor (ACE-031) increases muscle mass independent of fiber-type expression. (PMID:20466801)
- discussion of crystal structure of kinase domain of ActRIIB; structural analysis may be of help in developing selective inhibitors [REVIEW] (PMID:21353874)
- Mutations in Activin A Receptor Type IIB were identified in 4 of the 47 patients (8.5%) with heterotaxy syndrome. Our results expand the mutation spectrum of monogenic heterotaxy syndrome with associated cardiac anomalies. (PMID:21864452)
- Activin type IIB receptors are clearly demonstrable throughout the adult human hypothalamus and basal forebrain. (PMID:22296042)
- After eccentric exercise, postmenopausal women not using hormone therapy (HT) expressed lower levels of ActRIIb while postmenopausal women using HT showed a heightened response. (PMID:22395277)
- The interaction between all five miRNAs and ACVR2B was verified by an in vitro assay. (PMID:22431721)
- We found that the AAAAA, AGGAG, and AGGGA haplotypes in ACVR2B were associated with susceptibility to Premature Ovarian Failure when they also had at least one CATAG haplotype in ADAMTS19. (PMID:25051287)
- miR-21 interacts directly with the 3’-untranslated region of ACVR2B mRNA. Mechanical stretch suppressed ACVR2B protein levels in periodontal ligament stem cells. Gain- and loss of function of ACVR2B mediated the osteogenic differentiation of PDLSCs. (PMID:25203845)
- Activin A inhibited signaling by BMP-6 and BMP-9 by competing for type 2 receptors ACVR2A and ACVR2B. (PMID:26047946)
- Adenomyotic tissues express high levels of myostatin, follistatin, and activin type II receptors. (PMID:26086422)
- ActR-IIB is expressed in male germ cells and Sertoli cells. (PMID:26289399)
- the A allele of genetic variant rs2276541 in ACVR2B is associated with lean muscle mass (PMID:26848890)
- TGF-beta receptor mediated telomerase inhibition, telomere shortening and breast cancer cell senescence.( (PMID:27696331)
- MicroRNA-194 protects against chronic hepatitis B-related liver damage by promoting hepatocyte growth via ACVR2B. (PMID:30044042)
- Study supported ACVR2B as the facilitator for clear cell kidney carcinoma (KIRC) development. Its up-regulation controls the growth, viability, and EMT-specific protein expressions of KIRC cells. (PMID:30334578)
- Activation of activin receptor-2B by myostatin modulates the fibrogenic phenotype of human stellate cells, indicating that a myokine may be implicated in the pathogenesis of hepatic fibrosis. (PMID:31005555)
- Effects of Roux-en-Y gastric bypass on circulating follistatin, activin A, and peripheral ActRIIB signaling in humans with obesity and type 2 diabetes. (PMID:32873911)
- Activin A and Acvr2b mRNA from Umbilical Cord Blood Are Not Reliable Markers of Mild or Moderate Neonatal Hypoxic-Ischemic Encephalopathy. (PMID:33706404)
- Deficiency of myostatin protects skeletal muscle cells from ischemia reperfusion injury. (PMID:34131275)
- The association between sarcopenia susceptibility and polymorphisms of FTO, ACVR2B, and IRS1 in Tibetans. (PMID:34302448)
Cross-species orthologs
4 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | acvr2ba | ENSDARG00000044422 |
| danio_rerio | acvr2bb | ENSDARG00000103108 |
| mus_musculus | Acvr2b | ENSMUSG00000061393 |
| rattus_norvegicus | Acvr2b | ENSRNOG00000014477 |
Paralogs (11): TGFBR1 (ENSG00000106799), BMPR1A (ENSG00000107779), ACVR1 (ENSG00000115170), ACVR2A (ENSG00000121989), ACVR1C (ENSG00000123612), AMHR2 (ENSG00000135409), ACVR1B (ENSG00000135503), BMPR1B (ENSG00000138696), ACVRL1 (ENSG00000139567), TGFBR2 (ENSG00000163513), BMPR2 (ENSG00000204217)
Protein
Protein identifiers
Activin receptor type-2B — Q13705 (reviewed: Q13705)
Alternative names: Activin receptor type IIB
All UniProt accessions (1): Q13705
UniProt curated annotations — full annotation on UniProt →
Function. Transmembrane serine/threonine kinase activin type-2 receptor forming an activin receptor complex with activin type-1 serine/threonine kinase receptors (ACVR1, ACVR1B or ACVR1c). Transduces the activin signal from the cell surface to the cytoplasm and is thus regulating many physiological and pathological processes including neuronal differentiation and neuronal survival, hair follicle development and cycling, FSH production by the pituitary gland, wound healing, extracellular matrix production, immunosuppression and carcinogenesis. Activin is also thought to have a paracrine or autocrine role in follicular development in the ovary. Within the receptor complex, the type-2 receptors act as a primary activin receptors (binds activin-A/INHBA, activin-B/INHBB as well as inhibin-A/INHA-INHBA). The type-1 receptors like ACVR1B act as downstream transducers of activin signals. Activin binds to type-2 receptor at the plasma membrane and activates its serine-threonine kinase. The activated receptor type-2 then phosphorylates and activates the type-1 receptor. Once activated, the type-1 receptor binds and phosphorylates the SMAD proteins SMAD2 and SMAD3, on serine residues of the C-terminal tail. Soon after their association with the activin receptor and subsequent phosphorylation, SMAD2 and SMAD3 are released into the cytoplasm where they interact with the common partner SMAD4. This SMAD complex translocates into the nucleus where it mediates activin-induced transcription. Inhibitory SMAD7, which is recruited to ACVR1B through FKBP1A, can prevent the association of SMAD2 and SMAD3 with the activin receptor complex, thereby blocking the activin signal. Activin signal transduction is also antagonized by the binding to the receptor of inhibin-B via the IGSF1 inhibin coreceptor.
Subunit / interactions. Forms an activin receptor complex with activin type II receptors such as ACVR1B. Interacts with VPS39. Interacts with DYNLT1. Interacts with BMP3. Interacts with BMP2. Interacts with BMP6.
Subcellular location. Cell membrane.
Post-translational modifications. Phosphorylated. Constitutive phosphorylation is in part catalyzed by its own kinase activity.
Disease relevance. Heterotaxy, visceral, 4, autosomal (HTX4) [MIM:613751] A form of visceral heterotaxy, a complex disorder due to disruption of the normal left-right asymmetry of the thoracoabdominal organs. Visceral heterotaxy or situs ambiguus results in randomization of the placement of visceral organs, including the heart, lungs, liver, spleen, and stomach. The organs are oriented randomly with respect to the left-right axis and with respect to one another. It can be associated with a variety of congenital defects including cardiac malformations. HTX4 clinical features include dextrocardia, right aortic arch and a right-sided spleen, anomalies of the inferior and the superior vena cava, atrial ventricular canal defect with dextro-transposed great arteries, pulmonary stenosis, polysplenia and midline liver. The disease is caused by variants affecting the gene represented in this entry.
Miscellaneous. Produced from the insertion in the transcript of 82 base pairs, leading to frameshift and protein truncation. May be not functional.
Similarity. Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q13705-1 | ActR-IIB2 | yes |
| Q13705-2 | ActR-IIB1 |
RefSeq proteins (1): NP_001097* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000333 | TGFB_receptor | Family |
| IPR000472 | Activin_recp | Domain |
| IPR000719 | Prot_kinase_dom | Domain |
| IPR008271 | Ser/Thr_kinase_AS | Active_site |
| IPR011009 | Kinase-like_dom_sf | Homologous_superfamily |
| IPR045860 | Snake_toxin-like_sf | Homologous_superfamily |
Pfam: PF00069, PF01064
Catalyzed reactions (Rhea), 2 shown:
- L-seryl-[receptor-protein] + ATP = O-phospho-L-seryl-[receptor-protein] + ADP + H(+) (RHEA:18673)
- L-threonyl-[receptor-protein] + ATP = O-phospho-L-threonyl-[receptor-protein] + ADP + H(+) (RHEA:44880)
UniProt features (63 total): strand 20, helix 15, disulfide bond 5, sequence variant 4, turn 4, sequence conflict 3, glycosylation site 2, topological domain 2, binding site 2, signal peptide 1, chain 1, transmembrane region 1, domain 1, region of interest 1, active site 1
Structure
Experimental structures (PDB)
9 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 2H62 | X-RAY DIFFRACTION | 1.85 |
| 2QLU | X-RAY DIFFRACTION | 2 |
| 5NGV | X-RAY DIFFRACTION | 2 |
| 9D20 | X-RAY DIFFRACTION | 2.67 |
| 7MRZ | X-RAY DIFFRACTION | 3 |
| 9N4K | ELECTRON MICROSCOPY | 3.2 |
| 7OLY | X-RAY DIFFRACTION | 3.27 |
| 5NHR | X-RAY DIFFRACTION | 3.35 |
| 4FAO | X-RAY DIFFRACTION | 3.36 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q13705-F1 | 84.18 | 0.60 |
Antibody-complex structures (SAbDab): 4 — 5NGV, 5NHR, 7MRZ, 7OLY
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (1): 321 (proton acceptor)
Ligand- & substrate-binding residues (2): 196–204; 217
Disulfide bonds (5): 29–59, 49–77, 84–103, 90–102, 104–109
Glycosylation sites (2): 42, 65
Function
Pathways and Gene Ontology
Reactome pathways
7 pathways
| ID | Pathway |
|---|---|
| R-HSA-1181150 | Signaling by NODAL |
| R-HSA-1433617 | Regulation of signaling by NODAL |
| R-HSA-1502540 | Signaling by Activin |
| R-HSA-201451 | Signaling by BMP |
| R-HSA-1266738 | Developmental Biology |
| R-HSA-162582 | Signal Transduction |
| R-HSA-9006936 | Signaling by TGFB family members |
MSigDB gene sets: 430 (showing top):
GSE45365_NK_CELL_VS_CD11B_DC_UP, GOBP_EPITHELIUM_DEVELOPMENT, GOBP_SKELETAL_SYSTEM_DEVELOPMENT, GOBP_INSULIN_SECRETION, GOBP_INTRACELLULAR_IRON_ION_HOMEOSTASIS, GOBP_GROWTH, GOBP_REGULATION_OF_HORMONE_LEVELS, GOBP_OSTEOBLAST_DIFFERENTIATION, GOBP_HORMONE_TRANSPORT, GOBP_ARTERY_DEVELOPMENT, USF_C, GOBP_GASTRULATION_WITH_MOUTH_FORMING_SECOND, GOBP_AMEBOIDAL_TYPE_CELL_MIGRATION, GOBP_CELL_CELL_SIGNALING, GOBP_PANCREAS_DEVELOPMENT
GO Biological Process (42): negative regulation of transcription by RNA polymerase II (GO:0000122), gastrulation with mouth forming second (GO:0001702), kidney development (GO:0001822), lymphangiogenesis (GO:0001946), blood vessel remodeling (GO:0001974), regulation of DNA-templated transcription (GO:0006355), intracellular iron ion homeostasis (GO:0006879), signal transduction (GO:0007165), cell surface receptor protein serine/threonine kinase signaling pathway (GO:0007178), determination of left/right symmetry (GO:0007368), pattern specification process (GO:0007389), mesoderm development (GO:0007498), heart development (GO:0007507), response to glucose (GO:0009749), post-embryonic development (GO:0009791), anterior/posterior pattern specification (GO:0009952), insulin secretion (GO:0030073), negative regulation of ossification (GO:0030279), lung development (GO:0030324), positive regulation of bone mineralization (GO:0030501), BMP signaling pathway (GO:0030509), pancreas development (GO:0031016), activin receptor signaling pathway (GO:0032924), positive regulation of activin receptor signaling pathway (GO:0032927), organ growth (GO:0035265), odontogenesis of dentin-containing tooth (GO:0042475), positive regulation of osteoblast differentiation (GO:0045669), embryonic foregut morphogenesis (GO:0048617), skeletal system morphogenesis (GO:0048705), roof of mouth development (GO:0060021), lymphatic endothelial cell differentiation (GO:0060836), artery development (GO:0060840), venous blood vessel development (GO:0060841), retina vasculature development in camera-type eye (GO:0061298), trophoblast cell migration (GO:0061450), cellular response to growth factor stimulus (GO:0071363), negative regulation of cold-induced thermogenesis (GO:0120163), negative regulation of adipose tissue development (GO:1904178), skeletal system development (GO:0001501), protein phosphorylation (GO:0006468)
GO Molecular Function (15): protein serine/threonine kinase activity (GO:0004674), protein serine/threonine/tyrosine kinase activity (GO:0004712), ATP binding (GO:0005524), activin receptor activity, type II (GO:0016362), activin receptor activity (GO:0017002), kinase activator activity (GO:0019209), growth factor binding (GO:0019838), metal ion binding (GO:0046872), activin binding (GO:0048185), nucleotide binding (GO:0000166), protein kinase activity (GO:0004672), transmembrane receptor protein serine/threonine kinase activity (GO:0004675), protein binding (GO:0005515), kinase activity (GO:0016301), transferase activity (GO:0016740)
GO Cellular Component (6): cytoplasm (GO:0005737), plasma membrane (GO:0005886), protein-containing complex (GO:0032991), signaling receptor complex (GO:0043235), activin receptor complex (GO:0048179), membrane (GO:0016020)
Reactome top-level categories
Rollup of top-4 pathways:
| Category | Pathways |
|---|---|
| Signaling by TGFB family members | 2 |
| Developmental Biology | 1 |
| Signaling by NODAL | 1 |
| Signal Transduction | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| animal organ development | 3 |
| multicellular organism development | 2 |
| multicellular organismal process | 2 |
| protein kinase activity | 2 |
| kinase activity | 2 |
| cellular anatomical structure | 2 |
| regulation of transcription by RNA polymerase II | 1 |
| transcription by RNA polymerase II | 1 |
| negative regulation of DNA-templated transcription | 1 |
| gastrulation | 1 |
| renal system development | 1 |
| anatomical structure morphogenesis | 1 |
| lymph vessel morphogenesis | 1 |
| anatomical structure formation involved in morphogenesis | 1 |
| tissue remodeling | 1 |
| DNA-templated transcription | 1 |
| regulation of gene expression | 1 |
| regulation of RNA biosynthetic process | 1 |
| intracellular monoatomic cation homeostasis | 1 |
| inorganic ion homeostasis | 1 |
| cell communication | 1 |
| cellular process | 1 |
| signaling | 1 |
| regulation of cellular process | 1 |
| cellular response to stimulus | 1 |
| enzyme-linked receptor protein signaling pathway | 1 |
| determination of bilateral symmetry | 1 |
| left/right pattern formation | 1 |
| tissue development | 1 |
| circulatory system development | 1 |
| response to hexose | 1 |
| regionalization | 1 |
| protein secretion | 1 |
| peptide hormone secretion | 1 |
| ossification | 1 |
| regulation of ossification | 1 |
| negative regulation of multicellular organismal process | 1 |
| respiratory tube development | 1 |
| respiratory system development | 1 |
| bone mineralization | 1 |
Protein interactions and networks
STRING
2108 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| ACVR2B | MSTN | O14793 | 999 |
| ACVR2B | GDF11 | O95390 | 996 |
| ACVR2B | ACVR1B | P36896 | 988 |
| ACVR2B | TGFBR1 | P36897 | 986 |
| ACVR2B | BMP7 | P18075 | 985 |
| ACVR2B | ACVR2A | P27037 | 981 |
| ACVR2B | CRIPTO | P13385 | 968 |
| ACVR2B | ACVR1C | Q8NER5 | 967 |
| ACVR2B | BMP6 | P22004 | 966 |
| ACVR2B | GDF2 | Q9UK05 | 960 |
| ACVR2B | BMP2 | P12643 | 954 |
| ACVR2B | ACVR1 | Q04771 | 946 |
| ACVR2B | BMP4 | P12644 | 928 |
| ACVR2B | BMPR2 | Q13873 | 923 |
| ACVR2B | CFC1 | P0CG37 | 917 |
IntAct
65 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| ALDH3A1 | RCCD1 | psi-mi:“MI:0914”(association) | 0.640 |
| GDF11 | ACVR2B | psi-mi:“MI:0407”(direct interaction) | 0.590 |
| MSTN | ACVR2B | psi-mi:“MI:0407”(direct interaction) | 0.540 |
| ACVR2B | MSTN | psi-mi:“MI:0407”(direct interaction) | 0.540 |
| ACVR2B | MSTN | psi-mi:“MI:0915”(physical association) | 0.540 |
| ADGRG5 | KLRG2 | psi-mi:“MI:0914”(association) | 0.530 |
| MANSC1 | KLRG2 | psi-mi:“MI:0914”(association) | 0.530 |
| MAS1 | POTEF | psi-mi:“MI:0914”(association) | 0.530 |
| DLK1 | TCAF2 | psi-mi:“MI:0914”(association) | 0.530 |
| KIR3DL2 | METTL15 | psi-mi:“MI:0914”(association) | 0.530 |
| ZNRF4 | UPK3BL1 | psi-mi:“MI:0914”(association) | 0.530 |
| PTGER3 | PIK3R2 | psi-mi:“MI:0914”(association) | 0.530 |
| TGFBR2 | PIK3R2 | psi-mi:“MI:0914”(association) | 0.530 |
| CNGA3 | C2CD2L | psi-mi:“MI:0914”(association) | 0.530 |
| SLC31A1 | C2orf72 | psi-mi:“MI:0914”(association) | 0.530 |
| IZUMO1 | ADCY3 | psi-mi:“MI:0914”(association) | 0.530 |
| ACVR2B | FSTL1 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| ACVR2B | Mstn | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| HSP90AB1 | ACVR2B | psi-mi:“MI:0915”(physical association) | 0.400 |
| ACVR2B | INHBA | psi-mi:“MI:0915”(physical association) | 0.400 |
| AURKA | psi-mi:“MI:0914”(association) | 0.350 | |
| TBKBP1 | psi-mi:“MI:0914”(association) | 0.350 | |
| AHRR | psi-mi:“MI:0914”(association) | 0.350 | |
| IZUMO1 | CNOT1 | psi-mi:“MI:0914”(association) | 0.350 |
| RUSF1 | MAP1LC3B2 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (131): ACVR2B (Affinity Capture-Western), ACVR2B (Affinity Capture-MS), ACVR2B (Affinity Capture-MS), ACVR2B (Affinity Capture-MS), ACVR2B (Affinity Capture-MS), ACVR2B (Affinity Capture-MS), ACVR2B (Affinity Capture-MS), ACVR2B (Affinity Capture-MS), ACVR2B (Affinity Capture-MS), ACVR2B (Affinity Capture-MS), ACVR2B (Affinity Capture-MS), ACVR2B (Affinity Capture-MS), ACVR2B (Affinity Capture-MS), ACVR2B (Affinity Capture-MS), ACVR2B (Affinity Capture-MS)
ESM2 similar proteins: A1A4I4, C9J798, D4ABX8, O18735, O43374, O75325, O95294, P04629, P06494, P21860, P27040, P29376, P30530, P35739, P38445, P70268, P70424, Q00993, Q06418, Q13641, Q13705, Q16512, Q1WIM1, Q3UFB7, Q4R8Y9, Q5E9Z9, Q5PQV5, Q5RB22, Q5STE3, Q60553, Q61161, Q61526, Q62799, Q63433, Q66T47, Q6GQU6, Q6MZW2, Q6P1C6, Q6PFQ7, Q6PJG9
Diamond homologs: A0A0P0XII1, A0A0R0HPY5, A7J1T2, C0LGD6, C0LGD8, C0LGD9, C0LGG3, C0LGR6, C0LGV0, O00238, O00506, O04086, O35607, O46680, O64556, O65440, P04627, P09560, P0C5E2, P10398, P10533, P14056, P15056, P18161, P20792, P27037, P27038, P27039, P27040, P27041, P27966, P28028, P34908, P36894, P36895, P36896, P36897, P36898, P37023, P37172
SIGNOR signaling
8 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| GDF11 | up-regulates | ACVR2B | binding |
| INHBA | “up-regulates activity” | ACVR2B | binding |
| ACVR2B | “up-regulates activity” | ACVR1B | phosphorylation |
| BMP7 | up-regulates | ACVR2B | binding |
| MSTN | “up-regulates activity” | ACVR2B | binding |
| ACVR2B | “up-regulates activity” | SMAD2 | phosphorylation |
| ACVR2B | “up-regulates activity” | SMAD3 | phosphorylation |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 75 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| activin receptor signaling pathway | 5 | 72.7× | 3e-06 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
381 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 2 |
| Uncertain significance | 216 |
| Likely benign | 60 |
| Benign | 85 |
Top pathogenic / likely-pathogenic (2)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1024343 | NM_001106.4(ACVR2B):c.1148G>A (p.Arg383His) | Likely pathogenic |
| 545541 | NM_001106.4(ACVR2B):c.1147C>T (p.Arg383Cys) | Likely pathogenic |
SpliceAI
1409 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 3:38477277:T:TA | acceptor_gain | 1.0000 |
| 3:38477278:G:A | acceptor_gain | 1.0000 |
| 3:38477283:ACAG:A | acceptor_gain | 1.0000 |
| 3:38477284:C:G | acceptor_gain | 1.0000 |
| 3:38477285:A:AG | acceptor_gain | 1.0000 |
| 3:38477285:AG:A | acceptor_gain | 1.0000 |
| 3:38477286:G:GC | acceptor_gain | 1.0000 |
| 3:38477286:GG:G | acceptor_gain | 1.0000 |
| 3:38477286:GGC:G | acceptor_gain | 1.0000 |
| 3:38477286:GGCT:G | acceptor_gain | 1.0000 |
| 3:38477286:GGCTC:G | acceptor_gain | 1.0000 |
| 3:38477486:C:G | donor_gain | 1.0000 |
| 3:38477490:GA:G | donor_gain | 1.0000 |
| 3:38477491:A:AG | donor_gain | 1.0000 |
| 3:38477491:ATAG:A | donor_loss | 1.0000 |
| 3:38477492:TAGGT:T | donor_loss | 1.0000 |
| 3:38477493:AGGT:A | donor_loss | 1.0000 |
| 3:38477494:GGTAC:G | donor_loss | 1.0000 |
| 3:38477495:G:GA | donor_loss | 1.0000 |
| 3:38477496:T:A | donor_loss | 1.0000 |
| 3:38477859:A:AG | acceptor_gain | 1.0000 |
| 3:38477860:G:GC | acceptor_gain | 1.0000 |
| 3:38477860:GGCA:G | acceptor_gain | 1.0000 |
| 3:38477968:AAGG:A | donor_loss | 1.0000 |
| 3:38477969:AGGT:A | donor_loss | 1.0000 |
| 3:38477970:GGTAA:G | donor_loss | 1.0000 |
| 3:38477971:G:A | donor_loss | 1.0000 |
| 3:38477972:T:A | donor_loss | 1.0000 |
| 3:38478138:CAG:C | acceptor_loss | 1.0000 |
| 3:38478139:A:AG | acceptor_gain | 1.0000 |
AlphaMissense
3337 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 3:38477319:T:A | C29S | 1.000 |
| 3:38477320:G:C | C29S | 1.000 |
| 3:38477321:C:G | C29W | 1.000 |
| 3:38477409:T:A | C59S | 1.000 |
| 3:38477409:T:C | C59R | 1.000 |
| 3:38477410:G:A | C59Y | 1.000 |
| 3:38477410:G:C | C59S | 1.000 |
| 3:38477411:C:G | C59W | 1.000 |
| 3:38477421:T:A | W63R | 1.000 |
| 3:38477421:T:C | W63R | 1.000 |
| 3:38477423:G:C | W63C | 1.000 |
| 3:38477423:G:T | W63C | 1.000 |
| 3:38477463:T:A | C77S | 1.000 |
| 3:38477463:T:C | C77R | 1.000 |
| 3:38477464:G:A | C77Y | 1.000 |
| 3:38477464:G:C | C77S | 1.000 |
| 3:38477466:T:A | W78R | 1.000 |
| 3:38477466:T:C | W78R | 1.000 |
| 3:38477468:G:C | W78C | 1.000 |
| 3:38477468:G:T | W78C | 1.000 |
| 3:38477484:T:A | C84S | 1.000 |
| 3:38477484:T:C | C84R | 1.000 |
| 3:38477485:G:A | C84Y | 1.000 |
| 3:38477485:G:C | C84S | 1.000 |
| 3:38477485:G:T | C84F | 1.000 |
| 3:38477486:C:G | C84W | 1.000 |
| 3:38477868:T:A | C90S | 1.000 |
| 3:38477868:T:C | C90R | 1.000 |
| 3:38477869:G:A | C90Y | 1.000 |
| 3:38477869:G:C | C90S | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000015367 (3:38461040 C>T), RS1000032827 (3:38455444 C>T), RS1000123974 (3:38480663 T>C), RS1000125991 (3:38487430 G>A), RS1000239473 (3:38487166 C>T), RS1000307373 (3:38466925 A>G), RS1000371639 (3:38483780 G>A,C), RS1000489390 (3:38455691 C>A,G,T), RS1000550863 (3:38470500 G>T), RS1000661629 (3:38471812 G>A), RS1000725504 (3:38490126 C>T), RS1000739674 (3:38454067 C>T), RS1000760378 (3:38453667 T>C,G), RS1000892825 (3:38470127 T>C), RS1000991550 (3:38476296 T>C,G)
Disease associations
OMIM: gene MIM:602730 | disease phenotypes: MIM:613751, MIM:612260, MIM:601144
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| heterotaxy, visceral, 4, autosomal | Strong | Autosomal dominant |
Mondo (3): heterotaxy, visceral, 4, autosomal (MONDO:0013403), pyogenic bacterial infections due to MyD88 deficiency (MONDO:0012839), Brugada syndrome (MONDO:0015263)
Orphanet (3): Visceral heterotaxy (Orphanet:450), OBSOLETE: Bacterial susceptibility due to TLR signaling pathway deficiency (Orphanet:183713), Brugada syndrome (Orphanet:130)
HPO phenotypes
17 total (17 of 17 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0001629 | Ventricular septal defect |
| HP:0001651 | Dextrocardia |
| HP:0001669 | Transposition of the great arteries |
| HP:0001674 | Complete atrioventricular canal defect |
| HP:0001748 | Polysplenia |
| HP:0003577 | Congenital onset |
| HP:0004935 | Pulmonary artery atresia |
| HP:0005160 | Total anomalous pulmonary venous return |
| HP:0006695 | Atrioventricular canal defect |
| HP:0010452 | Ectopia of the spleen |
| HP:0011565 | Common atrium |
| HP:0011671 | Interrupted inferior vena cava with azygous continuation |
| HP:0012020 | Right aortic arch |
| HP:0031348 | Dextrotransposition of the great arteries |
| HP:0033379 | Bilateral superior vena cava |
| HP:0034188 | Midline liver |
GWAS associations
5 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST002457_2 | P wave duration | 8.000000e-27 |
| GCST007876_48 | Estimated glomerular filtration rate | 5.000000e-11 |
| GCST008058_63 | Estimated glomerular filtration rate | 8.000000e-26 |
| GCST008521_5 | Bitter beverage consumption | 2.000000e-06 |
| GCST010989_215 | Body size at age 10 | 3.000000e-08 |
EFO canonical traits (3, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0005094 | P wave duration |
| EFO:0010089 | bitter beverage consumption measurement |
| EFO:0009819 | comparative body size at age 10, self-reported |
MeSH disease descriptors (2)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D053840 | Brugada Syndrome | C14.280.067.322; C14.280.123.250; C16.320.100 |
| C567379 | MYD88 Deficiency (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL5466 (SINGLE PROTEIN)
Molecules with ChEMBL bioactivity
12 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 67,474 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).
| Molecule | Name | Phase | Patents |
|---|---|---|---|
| CHEMBL1289926 | AXITINIB | 4 | 15,732 |
| CHEMBL477772 | PAZOPANIB | 4 | 15,540 |
| CHEMBL5416410 | DASATINIB | 4 | 655 |
| CHEMBL217092 | SARACATINIB | 3 | 3,982 |
| CHEMBL428690 | ALVOCIDIB | 3 | 27,781 |
| CHEMBL603469 | LESTAURTINIB | 3 | |
| CHEMBL1090090 | VX-702 | 2 | 1,045 |
| CHEMBL403989 | TG100-801 | 2 | 249 |
| CHEMBL1090479 | GSK-1070916 | 1 | 177 |
| CHEMBL1908397 | KW-2449 | 1 | 622 |
| CHEMBL2041933 | AZD-7762 | 1 | 1,240 |
| CHEMBL574738 | AST-487 | 1 | 451 |
PharmGKB: 1 entry (VIP=true, CPIC=false)
GtoPdb / IUPHAR curated pharmacology
(IUPHAR/BPS Guide to Pharmacology — expert-curated)
Target class: catalytic receptor — Type II receptor serine/threonine kinases
Most potent curated ligand interactions (1 total), top 1:
| Ligand | Action | Affinity | Parameter |
|---|---|---|---|
| bimagrumab | Binding | 11.76 | pKd |
Binding affinities (BindingDB)
6 measured of 6 human assays (6 total across all organisms); most potent 6 below. Values come from heterogeneous assays and are not directly comparable.
| Ligand | Measure | Value |
|---|---|---|
| Staurosporine | KD | 1.7 nM |
| 4-(4-Fluorophenyl)-2-(4-hydroxyphenyl)-5-(4-pyridyl)-1H-imidazole | KD | 9.8 nM |
| BMS-354825 | KD | 27 nM |
| 5-({4-[(2,3-dimethyl-2H-indazol-6-yl)(methyl)amino]pyrimidin-2-yl}amino)-2-methylbenzene-1-sulfonamide | KD | 2900 nM |
| 1-Acyl-1H-[1,2,4]triazole-3,5-diamine Analogue 3b | KD | 3100 nM |
| 2-(2-chlorophenyl)-5,7-dihydroxy-8-[(3S)-3-hydroxy-1-methyl-4-piperidinyl]-1-benzopyran-4-one | KD | 5300 nM |
ChEMBL bioactivities
39 potent at pChembl≥5 of 39 total, top 34 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 8.52 | Kd | 3.019 | nM | CHEMBL5653589 |
| 8.34 | ED50 | 4.528 | nM | CHEMBL5653589 |
| 8.12 | Kd | 7.6 | nM | CHEMBL1241674 |
| 8.04 | Kd | 9.1 | nM | CHEMBL386051 |
| 8.00 | IC50 | 10 | nM | CHEMBL1808264 |
| 7.75 | IC50 | 17.9 | nM | CHEMBL5591770 |
| 7.16 | IC50 | 68.9 | nM | CHEMBL5595138 |
| 7.04 | Kd | 92 | nM | VX-702 |
| 6.60 | Kd | 253 | nM | AZD-7762 |
| 6.44 | IC50 | 364 | nM | CHEMBL6172244 |
| 6.43 | Kd | 370 | nM | KW-2449 |
| 6.38 | Kd | 419 | nM | TG100-801 |
| 6.24 | Kd | 570 | nM | DASATINIB |
| 6.04 | Kd | 901 | nM | CHEMBL3991933 |
| 5.89 | Kd | 1300 | nM | KW-2449 |
| 5.85 | Kd | 1400 | nM | AST-487 |
| 5.62 | Kd | 2400 | nM | ALVOCIDIB |
| 5.62 | Kd | 2400 | nM | PAZOPANIB |
| 5.61 | Kd | 2485 | nM | DASATINIB |
| 5.50 | IC50 | 3130 | nM | CHEMBL4283638 |
| 5.50 | Kd | 3181 | nM | CHEMBL3752910 |
| 5.50 | Kd | 3200 | nM | PLX-4720 |
| 5.42 | Kd | 3800 | nM | LESTAURTINIB |
| 5.41 | Kd | 3878 | nM | SARACATINIB |
| 5.37 | Kd | 4300 | nM | TAE-684 |
| 5.34 | Kd | 4600 | nM | STAUROSPORINE |
| 5.32 | ED50 | 4773 | nM | CHEMBL3752910 |
| 5.32 | Kd | 4800 | nM | SB-202190 |
| 5.28 | Kd | 5200 | nM | AXITINIB |
| 5.23 | Kd | 5900 | nM | JNJ-7706621 |
| 5.20 | IC50 | 6344 | nM | CHEMBL5594704 |
| 5.12 | IC50 | 7680 | nM | CHEMBL3823101 |
| 5.03 | IC50 | 9300 | nM | CHEMBL513147 |
| 5.00 | Kd | 9900 | nM | GSK-1070916 |
PubChem BioAssay actives
36 with measured affinity, of 452 total; 29 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| 4-methyl-3-[(2-methyl-6-pyridin-3-ylpyrazolo[3,4-d]pyrimidin-4-yl)amino]-N-[3-(trifluoromethyl)phenyl]benzamide | 2147802: Binding affinity to human ACVR2B incubated for 45 mins by Kinobead based pull down assay | kd | 0.0030 | uM |
| 2-(4-amino-1-propan-2-ylpyrazolo[3,4-d]pyrimidin-3-yl)-1H-indol-5-ol | 624820: Binding constant for ACVR2B kinase domain | kd | 0.0076 | uM |
| 6-(2,6-dichlorophenyl)-8-methyl-2-(3-methylsulfanylanilino)pyrido[2,3-d]pyrimidin-7-one | 624820: Binding constant for ACVR2B kinase domain | kd | 0.0091 | uM |
| 2,6-difluoro-N-[2-fluoro-5-[5-[2-[(6-morpholin-4-yl-3-pyridinyl)amino]pyrimidin-4-yl]-2-propan-2-yl-1,3-thiazol-4-yl]phenyl]benzenesulfonamide | 609684: Inhibition of ACTR-2B | ic50 | 0.0100 | uM |
| 5-(4-acetyl-1H-pyrrol-2-yl)-2-[cyclopropyl-[1-(3-methoxy-4-pyridinyl)pyrazol-4-yl]amino]-1,3-thiazole-4-carboxamide | 2112256: Inhibition of ACTR2B (unknown origin) by TR-FRET assay | ic50 | 0.0179 | uM |
| 5-(4-acetyl-1H-pyrrol-2-yl)-2-[cyclopropyl-[1-[3-(hydroxymethyl)-4-pyridinyl]pyrazol-4-yl]amino]-1,3-thiazole-4-carboxamide | 2112256: Inhibition of ACTR2B (unknown origin) by TR-FRET assay | ic50 | 0.0689 | uM |
| 6-(N-carbamoyl-2,6-difluoroanilino)-2-(2,4-difluorophenyl)pyridine-3-carboxamide | 476304: Binding affinity to ACVR2beta | kd | 0.0920 | uM |
| 3-(carbamoylamino)-5-(3-fluorophenyl)-N-[(3S)-piperidin-3-yl]thiophene-2-carboxamide | 1424902: Kinobeads (epsilon), multiple immobilized ATP-competitive broad spectrum kinase inhibitors, used to assess residual binding of ~300 proteins simultaneously from cell lysate in the presence of a compound. Quantitative readout performed by mass spectrometry. | kd | 0.2530 | uM |
| [4-[(E)-2-(1H-indazol-3-yl)ethenyl]phenyl]-piperazin-1-ylmethanone | 624820: Binding constant for ACVR2B kinase domain | kd | 0.3700 | uM |
| [4-chloro-3-[5-methyl-3-[4-(2-pyrrolidin-1-ylethoxy)anilino]-1,2,4-benzotriazin-7-yl]phenyl] benzoate | 1424902: Kinobeads (epsilon), multiple immobilized ATP-competitive broad spectrum kinase inhibitors, used to assess residual binding of ~300 proteins simultaneously from cell lysate in the presence of a compound. Quantitative readout performed by mass spectrometry. | kd | 0.4190 | uM |
| N-(2-chloro-6-methylphenyl)-2-[[6-[4-(2-hydroxyethyl)piperazin-1-yl]-2-methylpyrimidin-4-yl]amino]-1,3-thiazole-5-carboxamide;hydrate | 435147: Binding constant for ACVR2B kinase domain | kd | 0.5700 | uM |
| 3-(2-methyl-1,3-benzoxazol-5-yl)-1-propan-2-ylpyrazolo[3,4-d]pyrimidin-4-amine | 1424902: Kinobeads (epsilon), multiple immobilized ATP-competitive broad spectrum kinase inhibitors, used to assess residual binding of ~300 proteins simultaneously from cell lysate in the presence of a compound. Quantitative readout performed by mass spectrometry. | kd | 0.9010 | uM |
| 1-[4-[(4-ethylpiperazin-1-yl)methyl]-3-(trifluoromethyl)phenyl]-3-[4-[6-(methylamino)pyrimidin-4-yl]oxyphenyl]urea | 624820: Binding constant for ACVR2B kinase domain | kd | 1.4000 | uM |
| Pazopanib | 435147: Binding constant for ACVR2B kinase domain | kd | 2.4000 | uM |
| 2-(2-chlorophenyl)-5,7-dihydroxy-8-[(3S,4R)-3-hydroxy-1-methylpiperidin-4-yl]chromen-4-one | 435147: Binding constant for ACVR2B kinase domain | kd | 2.4000 | uM |
| 4-[6-[4-(1-pyrrolidin-1-ylethyl)phenyl]pyrazolo[1,5-a]pyrimidin-3-yl]naphthalene-1-sulfonamide | 1417564: Inhibition of GST-tagged human ACVR2B catalytic domain (185 to 488 residues) expressed in Baculovirus expression system by LanthaScreen assay | ic50 | 3.1300 | uM |
| 4-methyl-3-[(1-methyl-6-pyridin-3-ylpyrazolo[3,4-d]pyrimidin-4-yl)amino]-N-[3-(trifluoromethyl)phenyl]benzamide | 2147802: Binding affinity to human ACVR2B incubated for 45 mins by Kinobead based pull down assay | kd | 3.1814 | uM |
| N-[3-(5-chloro-1H-pyrrolo[2,3-b]pyridine-3-carbonyl)-2,4-difluorophenyl]propane-1-sulfonamide | 624820: Binding constant for ACVR2B kinase domain | kd | 3.2000 | uM |
| (15S,16S,18R)-16-hydroxy-16-(hydroxymethyl)-15-methyl-28-oxa-4,14,19-triazaoctacyclo[12.11.2.115,18.02,6.07,27.08,13.019,26.020,25]octacosa-1,6,8,10,12,20,22,24,26-nonaen-3-one | 507822: Binding affinity to ACVR2B | kd | 3.8000 | uM |
| N-(5-chloro-1,3-benzodioxol-4-yl)-7-[2-(4-methylpiperazin-1-yl)ethoxy]-5-(oxan-4-yloxy)quinazolin-4-amine | 1424902: Kinobeads (epsilon), multiple immobilized ATP-competitive broad spectrum kinase inhibitors, used to assess residual binding of ~300 proteins simultaneously from cell lysate in the presence of a compound. Quantitative readout performed by mass spectrometry. | kd | 3.8780 | uM |
| 5-chloro-2-N-[2-methoxy-4-[4-(4-methylpiperazin-1-yl)piperidin-1-yl]phenyl]-4-N-(2-propan-2-ylsulfonylphenyl)pyrimidine-2,4-diamine | 624820: Binding constant for ACVR2B kinase domain | kd | 4.3000 | uM |
| (2S,3R,4R,6R)-3-methoxy-2-methyl-4-(methylamino)-29-oxa-1,7,17-triazaoctacyclo[12.12.2.12,6.07,28.08,13.015,19.020,27.021,26]nonacosa-8,10,12,14,19,21,23,25,27-nonaen-16-one | 435147: Binding constant for ACVR2B kinase domain | kd | 4.6000 | uM |
| 4-[4-(4-fluorophenyl)-5-pyridin-4-yl-1H-imidazol-2-yl]phenol | 435147: Binding constant for ACVR2B kinase domain | kd | 4.8000 | uM |
| Axitinib | 624820: Binding constant for ACVR2B kinase domain | kd | 5.2000 | uM |
| 4-[[5-amino-1-(2,6-difluorobenzoyl)-1,2,4-triazol-3-yl]amino]benzenesulfonamide | 435147: Binding constant for ACVR2B kinase domain | kd | 5.9000 | uM |
| 5-(4-acetyl-1H-pyrrol-2-yl)-2-[cyclopropyl-[1-(3-fluoro-4-pyridinyl)pyrazol-4-yl]amino]-1,3-thiazole-4-carboxamide | 2112256: Inhibition of ACTR2B (unknown origin) by TR-FRET assay | ic50 | 6.3440 | uM |
| 4-[4-[(dimethylamino)methyl]-2,5-dimethoxyphenyl]-2-methyl-2,7-naphthyridin-1-one | 1309661: Inhibition of ACVR2B (unknown origin) | ic50 | 7.6800 | uM |
| 4-[6-(4-piperazin-1-ylphenyl)pyrazolo[1,5-a]pyrimidin-3-yl]quinoline | 1967380: Inhibition of ACVR2B (unknown origin) by LanthaScreen TR-FRET assay | ic50 | 9.3000 | uM |
| 3-[4-[4-[2-[3-[(dimethylamino)methyl]phenyl]-1H-pyrrolo[2,3-b]pyridin-4-yl]-1-ethylpyrazol-3-yl]phenyl]-1,1-dimethylurea | 1424902: Kinobeads (epsilon), multiple immobilized ATP-competitive broad spectrum kinase inhibitors, used to assess residual binding of ~300 proteins simultaneously from cell lysate in the presence of a compound. Quantitative readout performed by mass spectrometry. | kd | 9.9000 | uM |
CTD chemical–gene interactions
28 total (human), top 28 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects expression, decreases expression | 3 |
| Phenylmercuric Acetate | affects cotreatment, decreases expression | 2 |
| aristolochic acid I | decreases expression | 1 |
| testosterone enanthate | affects expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| butyraldehyde | decreases expression | 1 |
| 2-(4-morpholinyl)-8-phenyl-4H-1-benzopyran-4-one | affects reaction, affects expression | 1 |
| entinostat | decreases expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, decreases expression | 1 |
| dorsomorphin | affects cotreatment, decreases expression | 1 |
| Sunitinib | increases expression | 1 |
| Vorinostat | decreases expression | 1 |
| Glyphosate | decreases expression, increases expression | 1 |
| Arsenic | affects expression | 1 |
| Carbamazepine | affects expression | 1 |
| Cisplatin | increases expression | 1 |
| Diclofenac | affects expression | 1 |
| Estradiol | decreases expression | 1 |
| Formaldehyde | increases expression | 1 |
| Methyl Methanesulfonate | increases expression | 1 |
| Tetrachlorodibenzodioxin | increases expression | 1 |
| Dronabinol | increases expression | 1 |
| Tobacco Smoke Pollution | decreases expression | 1 |
| Toluene | decreases expression, increases methylation | 1 |
| Tretinoin | decreases expression | 1 |
| 1-Methyl-4-phenylpyridinium | affects expression, affects reaction | 1 |
| Cyclosporine | increases expression | 1 |
| Antirheumatic Agents | increases expression | 1 |
ChEMBL screening assays
104 unique, capped per target: 104 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL1032241 | Binding | Inhibition of ACVR2B at 3 uM | Discovery of substituted 4-(pyrazol-4-yl)-phenylbenzodioxane-2-carboxamides as potent and highly selective Rho kinase (ROCK-II) inhibitors. — J Med Chem |
Cellosaurus cell lines
11 cell lines: 10 cancer cell line, 1 transformed cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_D2HU | Abcam Raji ACVR2B KO | Cancer cell line | Male |
| CVCL_D8YN | Ubigene HEK293 ACVR2B KO | Transformed cell line | Female |
| CVCL_E8IH | Jurkat-NFAT-Luc2-ACVR2B-KO-CD16-V158-OE | Cancer cell line | Male |
| CVCL_SB38 | HAP1 ACVR2B (-) 1 | Cancer cell line | Male |
| CVCL_SB39 | HAP1 ACVR2B (-) 2 | Cancer cell line | Male |
| CVCL_SB40 | HAP1 ACVR2B (-) 3 | Cancer cell line | Male |
| CVCL_SB41 | HAP1 ACVR2B (-) 4 | Cancer cell line | Male |
| CVCL_SB42 | HAP1 ACVR2B (-) 5 | Cancer cell line | Male |
| CVCL_SB43 | HAP1 ACVR2B (-) 6 | Cancer cell line | Male |
| CVCL_UQ05 | Abcam Jurkat ACVR2B KO | Cancer cell line | Male |
Clinical trials (associated diseases)
43 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00702117 | PHASE4 | COMPLETED | Ajmaline Utilization in the Diagnosis and Treatment of Cardiac Arrhythmias |
| NCT00701077 | PHASE3 | TERMINATED | DAPERB 3,4-DiAminoPyridine and Electrophysiological Response in Brugada Syndrome |
| NCT00927732 | PHASE3 | TERMINATED | Hydroquinidine Versus Placebo in Patients With Brugada Syndrome |
| NCT02933437 | PHASE2 | UNKNOWN | The Response To Ajmaline Provocation in Healthy Subjects |
| NCT07146880 | PHASE2 | NOT_YET_RECRUITING | Empagliflozin as a Potential Therapeutic Solution for Patients With Brugada Syndrome |
| NCT00292032 | Not specified | COMPLETED | Registry of Unexplained Cardiac Arrest |
| NCT02014961 | Not specified | UNKNOWN | Worm Study: Modifier Genes in Sudden Cardiac Death |
| NCT02052765 | Not specified | COMPLETED | AnalyST & Brugada Syndrome - Feasibility Study |
| NCT02302274 | Not specified | COMPLETED | Diagnostic Value and Safety of Flecainide Infusion Test in Brugada Syndrome |
| NCT02344277 | Not specified | COMPLETED | Evaluation of Subcutaneous Implantable Cardiac Defibrillator in Brugada Patients |
| NCT02413450 | Not specified | ENROLLING_BY_INVITATION | Derivation of Human Induced Pluripotent Stem (iPS) Cells to Heritable Cardiac Arrhythmias |
| NCT02641431 | Not specified | COMPLETED | Epicardial Ablation in Brugada Syndrome |
| NCT02704416 | Not specified | COMPLETED | Ablation in Brugada Syndrome for the Prevention of VF |
| NCT03182777 | Not specified | COMPLETED | Safety of Local Dental Anesthesia in Patients With Cardiac Channelopathies |
| NCT03435393 | Not specified | UNKNOWN | Ripple Mapping for Epicardial Mapping of Brugada Syndrome |
| NCT03485508 | Not specified | UNKNOWN | The Brugada Syndrome: a Follow-up Study |
| NCT03491475 | Not specified | UNKNOWN | Echocardiography During Ajmaline Test |
| NCT03524079 | Not specified | COMPLETED | Right Ventricle Morphology and Hemodynamics in BrS |
| NCT03764592 | Not specified | COMPLETED | VF Mapping in Brugada and Early Repolarization Syndromes |
| NCT03775954 | Not specified | RECRUITING | Fetal Electrophysiologic Abnormalities in High-Risk Pregnancies Associated With Fetal Demise |
| NCT03992677 | Not specified | COMPLETED | Feasibility of Improving Risk Stratification in Brugada Syndrome |
| NCT04124237 | Not specified | COMPLETED | Long Term Monitoring for Risk of Sudden Death |
| NCT04232787 | Not specified | UNKNOWN | Southeast Asian Brugada Syndrome Cohort |
| NCT04257994 | Not specified | RECRUITING | Distribution of Cell-cell Junction Proteins in Arrhythmic Disorders |
| NCT04420078 | Not specified | COMPLETED | Brugada Ablation of VF Substrate Ongoing MultiCenter Registry |
| NCT04580992 | Not specified | UNKNOWN | Defining the Electrocardiographic Effect of Propofol on the Ajmaline Provocation Drug Challenge: A Prospective Trial |
| NCT04650009 | Not specified | COMPLETED | Physical Activity in Children With Inherited Cardiac Diseases |
| NCT04712136 | Not specified | COMPLETED | Healthy-related Quality of Life and Physical Activity of Children With Cardiac Malformations |
| NCT04808193 | Not specified | UNKNOWN | European Perioperative Brugada Survey |
| NCT05048602 | Not specified | UNKNOWN | Drug-induced Brugada Syndrome Research Database |
| NCT05274646 | Not specified | COMPLETED | Impact on Risk Stratification of Overlap Syndrome Phenotype in Patients With E1784K Mutation in SCN5A |
| NCT05283759 | Not specified | RECRUITING | UZ Brussel HRMC Registry of Brugada Syndrome |
| NCT05521451 | Not specified | RECRUITING | Clinical Cohort Study - TRUST |
| NCT05643209 | Not specified | RECRUITING | Brugada Syndrome Substrate Characterization and Ablation |
| NCT05685134 | Not specified | COMPLETED | Epicardial Radiofrequency Catheter Ablation in Patients With Brugada Syndrome |
| NCT06376552 | Not specified | COMPLETED | Artificial Intelligence for the Prioritization of Genetic Background in Brugada Syndrome |
| NCT06546137 | Not specified | RECRUITING | National Network for Cardiovascular Genomics: Advancing Cardiovascular Healthcare for Hereditary Diseases in Brazil’s Unified Health System Through a Multicenter Registry |
| NCT06567639 | Not specified | COMPLETED | High Density Mapping in Brugada Syndrome |
| NCT06647927 | Not specified | RECRUITING | GenLab: Unveiling the Genetic Landscape of Brugada Syndrome: Novel Biomarker Discovery for Precise Diagnosis |
| NCT06653504 | Not specified | COMPLETED | The Conus Brugada Syndrome Study |
Related Atlas pages
- Associated diseases: heterotaxy, visceral, 4, autosomal
- Targeted by drugs: Bimagrumab
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): Brugada syndrome, heterotaxy, visceral, 4, autosomal, pyogenic bacterial infections due to MyD88 deficiency