ADA
gene geneOn this page
Also known as ADA1
Summary
ADA (adenosine deaminase, HGNC:186) is a protein-coding gene on chromosome 20q13.12, encoding Adenosine deaminase (P00813). Catalyzes the hydrolytic deamination of adenosine and 2-deoxyadenosine.
This gene encodes an enzyme that catalyzes the hydrolysis of adenosine to inosine in the purine catabolic pathway. Various mutations have been described for this gene and have been linked to human diseases related to impaired immune function such as severe combined immunodeficiency disease (SCID) which is the result of a deficiency in the ADA enzyme. In ADA-deficient individuals there is a marked depletion of T, B, and NK lymphocytes, and consequently, a lack of both humoral and cellular immunity. Conversely, elevated levels of this enzyme are associated with congenital hemolytic anemia.
Source: NCBI Gene 100 — RefSeq curated summary.
At a glance
- Gene–disease (curated): severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-negative, due to adenosine deaminase deficiency (Definitive, ClinGen) — +1 more curated relationship
- GWAS associations: 6
- Clinical variants (ClinVar): 769 total — 69 pathogenic, 79 likely-pathogenic
- Phenotypes (HPO): 74
- Druggable target: yes — 3 molecules with ChEMBL bioactivity
- MANE Select transcript:
NM_000022
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:186 |
| Approved symbol | ADA |
| Name | adenosine deaminase |
| Location | 20q13.12 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | ADA1 |
| Ensembl gene | ENSG00000196839 |
| Ensembl biotype | protein_coding |
| OMIM | 608958 |
| Entrez | 100 |
Gene structure
Transcript identifiers
Ensembl transcripts: 64 — 28 protein_coding, 22 retained_intron, 14 nonsense_mediated_decay
ENST00000372874, ENST00000464097, ENST00000492931, ENST00000535573, ENST00000536076, ENST00000536532, ENST00000537820, ENST00000539235, ENST00000545776, ENST00000695889, ENST00000695890, ENST00000695891, ENST00000695927, ENST00000695949, ENST00000695956, ENST00000695957, ENST00000695991, ENST00000695992, ENST00000695993, ENST00000695994, ENST00000695995, ENST00000695996, ENST00000695997, ENST00000696003, ENST00000696004, ENST00000696005, ENST00000696006, ENST00000696007, ENST00000696008, ENST00000696009, ENST00000696010, ENST00000696017, ENST00000696034, ENST00000696035, ENST00000696036, ENST00000696037, ENST00000696038, ENST00000696039, ENST00000696058, ENST00000696059, ENST00000696060, ENST00000696061, ENST00000696062, ENST00000696063, ENST00000696064, ENST00000696065, ENST00000696072, ENST00000696073, ENST00000696074, ENST00000696075, ENST00000696076, ENST00000696077, ENST00000696078, ENST00000696079, ENST00000696080, ENST00000696081, ENST00000696082, ENST00000696083, ENST00000696084, ENST00000696104, ENST00000696105, ENST00000903022, ENST00000903023, ENST00000921861
RefSeq mRNA: 3 — MANE Select: NM_000022
NM_000022, NM_001322050, NM_001322051
CCDS: CCDS13335, CCDS82618
Canonical transcript exons
ENST00000372874 — 12 exons
| Exon | Start | End |
|---|---|---|
| ENSE00003463626 | 44626456 | 44626599 |
| ENSE00003478001 | 44636227 | 44636288 |
| ENSE00003512095 | 44622829 | 44622930 |
| ENSE00003524429 | 44621018 | 44621147 |
| ENSE00003526755 | 44623007 | 44623078 |
| ENSE00003551087 | 44622588 | 44622652 |
| ENSE00003572076 | 44620299 | 44620401 |
| ENSE00003645967 | 44629047 | 44629169 |
| ENSE00003659075 | 44624202 | 44624329 |
| ENSE00003691626 | 44625569 | 44625684 |
| ENSE00003965374 | 44619522 | 44619847 |
| ENSE00003965375 | 44651575 | 44651699 |
Expression profiles
Bgee: expression breadth ubiquitous, 202 present calls, max score 99.53.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 13.7815 / max 1599.7343, expressed in 1617 samples.
FANTOM5 promoters (4 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 187353 | 10.8030 | 1421 |
| 187354 | 2.3118 | 1100 |
| 187352 | 0.6354 | 312 |
| 187355 | 0.0313 | 14 |
Top tissues by expression
279 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| jejunal mucosa | UBERON:0000399 | 99.53 | gold quality |
| duodenum | UBERON:0002114 | 97.09 | gold quality |
| thymus | UBERON:0002370 | 95.40 | gold quality |
| granulocyte | CL:0000094 | 93.72 | gold quality |
| body of stomach | UBERON:0001161 | 92.35 | gold quality |
| oocyte | CL:0000023 | 91.05 | gold quality |
| stomach | UBERON:0000945 | 89.51 | gold quality |
| secondary oocyte | CL:0000655 | 89.44 | gold quality |
| right atrium auricular region | UBERON:0006631 | 89.33 | gold quality |
| apex of heart | UBERON:0002098 | 89.23 | gold quality |
| mucosa of stomach | UBERON:0001199 | 88.30 | gold quality |
| subcutaneous adipose tissue | UBERON:0002190 | 88.26 | gold quality |
| cardiac atrium | UBERON:0002081 | 87.81 | gold quality |
| vermiform appendix | UBERON:0001154 | 87.55 | gold quality |
| lymph node | UBERON:0000029 | 87.16 | gold quality |
| blood | UBERON:0000178 | 86.57 | gold quality |
| leukocyte | CL:0000738 | 86.42 | gold quality |
| fundus of stomach | UBERON:0001160 | 86.14 | gold quality |
| monocyte | CL:0000576 | 86.13 | gold quality |
| mononuclear cell | CL:0000842 | 86.11 | gold quality |
| spleen | UBERON:0002106 | 86.11 | gold quality |
| omental fat pad | UBERON:0010414 | 85.82 | gold quality |
| adipose tissue of abdominal region | UBERON:0007808 | 85.72 | gold quality |
| peritoneum | UBERON:0002358 | 85.70 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 85.60 | gold quality |
| adipose tissue | UBERON:0001013 | 85.32 | gold quality |
| parietal pleura | UBERON:0002400 | 85.15 | gold quality |
| heart left ventricle | UBERON:0002084 | 84.79 | gold quality |
| bone marrow | UBERON:0002371 | 84.74 | gold quality |
| connective tissue | UBERON:0002384 | 84.57 | gold quality |
Single-cell (SCXA)
Detected in 11 experiment(s), a significant marker in 8.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-MTAB-9067 | yes | 1361.20 |
| E-CURD-112 | yes | 628.32 |
| E-MTAB-10432 | yes | 607.51 |
| E-ANND-5 | yes | 600.43 |
| E-MTAB-7249 | yes | 144.96 |
| E-HCAD-4 | yes | 52.19 |
| E-ANND-3 | yes | 10.39 |
| E-MTAB-9801 | yes | 6.63 |
| E-CURD-79 | no | 1608.65 |
| E-MTAB-6379 | no | 1080.03 |
| E-HCAD-6 | no | 622.87 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): CDX1, ESR1, GATA4, ONECUT2, PDX1, RARA, RUNX1, SP1, TFAP2A, TFAP2C, TP53, TP63, TP73, YY1
miRNA regulators (miRDB)
14 targeting ADA, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4533 | 100.00 | 69.48 | 2758 |
| HSA-MIR-3064-3P | 100.00 | 70.09 | 1254 |
| HSA-MIR-1252-5P | 100.00 | 69.80 | 2774 |
| HSA-MIR-4715-3P | 99.98 | 66.03 | 670 |
| HSA-MIR-30A-3P | 99.87 | 69.74 | 2928 |
| HSA-MIR-30D-3P | 99.87 | 69.92 | 2917 |
| HSA-MIR-30E-3P | 99.87 | 69.68 | 2942 |
| HSA-MIR-3663-3P | 99.84 | 70.39 | 798 |
| HSA-MIR-4495 | 99.82 | 72.08 | 3080 |
| HSA-MIR-6815-3P | 99.13 | 68.98 | 1530 |
| HSA-MIR-4758-3P | 99.12 | 63.96 | 869 |
| HSA-MIR-10B-3P | 99.04 | 66.98 | 988 |
| HSA-MIR-6501-5P | 97.41 | 68.24 | 712 |
| HSA-MIR-6872-3P | 97.08 | 66.99 | 750 |
Literature-anchored findings (GeneRIF, showing 40)
- Clustered charged amino acids of human adenosine deaminase comprise a functional epitope for binding the adenosine deaminase complexing protein CD26/dipeptidyl peptidase IV (PMID:11901152)
- Relationship between plasma malondialdehyde levels and adenosine deaminase activities in preeclampsia. (PMID:12104097)
- serum adenosine deaminase-2 (but not adenosine deaminase-1) and cytidine deaminase levels were significantly higher in systemic lupus erythematosus patients (PMID:12113294)
- In humans, ADA1 was mainly purified concomitant with ADA-binding protein and dipeptidyl peptidase IV, was not adsorbed in adenosine-Sepharose, but was adsorbed in IgG anti-ADA1-Sepharose column; properties compared with chicken ADA1 (PMID:12381379)
- The activity of this enzyme was studied in tissues, erythrocytes, and blood plasma of patients with peptic ulcer both in its uncomplicated course and in the development of complications. (PMID:12712614)
- The activity of ADA was determined in lymphocytes, esoinophils and blood serum in patients with bronchial asthma. (PMID:12774669)
- ADA was analyzed by linkage disequilibrium and no correlation was found between hot spots of equal and unequal homologous recombination. (PMID:12809673)
- Adenosine deaminase binding is diminished by mutation of ADA residues known to interact with CD26. (PMID:15016824)
- adenosine-related gene variants do not appear to alter susceptibility to the disease in this group of essential hypertensives (PMID:15257174)
- adenosine deaminase contributes to the clinical manifestations of type 2 diabetes and probably also have a marginal influence on susceptibility to the disease (PMID:15281007)
- The adenosine deaminase (ADA) gene was highly up-regulated in Ara-C-resistant cells, while equilibrative nucleoside transporter 1 (ENT1) and several cell-cycle-related genes were down-regulated. (PMID:15632314)
- ADA colocalizing with adenosine receptors on dendritic cells interact with CD26 expressed on lymphocytes. (PMID:15983379)
- Adenosine deaminase activity was abnormal in active nephrotic syndrome, and lymphocyte ADA demonstrated change both in active as well as remission stage of the disease. (PMID:16133068)
- We tested whether p63 is implicated in transcriptional events related to sustaining cell proliferation by transactivation of antiapoptotic and cell survival target genes such as Adenosine Deaminase (ADA), an important gene involved in cell proliferation. (PMID:16410722)
- During acute hypoxia associated with vascular leakage and excessive inflammation, ADA inhibition may serve as therapeutic strategy. (PMID:16670267)
- Findings suggest a possible role for a low-activity genotype of adenosine deaminase in the pathogenesis of mild mental retardation. No significant differences were found when comparing the group with moderate or severe mental retardation and controls. (PMID:16970880)
- the ADA c7C/T mutation was estimated to be approximately 7,100 years old (PMID:17181544)
- Increased adenosine deaminase is associated with hydatidiform mole (PMID:17243920)
- ADA*2 allele may decrease genetic susceptibility to coronary artery disease. (PMID:17287605)
- G22A polymorphism plays a minimal role in susceptibility to autism in North American families (PMID:17340203)
- The measurement of adenosine deaminase activity in ascites represents a diagnostic advance in tuberculous peritonitis among end-stage renal failure patients. (PMID:17397971)
- the transition-state structures of PfADA, HsADA, and bovine ADA (BtADA) solved using competitive kinetic isotope effects (KIE) and density functional calculations (PMID:17536804)
- This study shows that adenosine elimination on human airway epithelia is mediated by ADA1, CNT2, and CNT3, which constitute important regulators of adenosine-mediated inflammation. (PMID:17696452)
- CD4(+) T cells from ADA-severe combined immunodeficiency patients have severely compromised T cell receptor/CD28-driven proliferation and cytokine production, both at the transcriptional and protein levels. (PMID:18218852)
- Results describe the activities of ectonucleotide pyrophosphatase/phosphodiesterase and adenosine deaminase in patients with uterine cervix neoplasia. (PMID:18222177)
- the primary mechanism in men with ischemic stroke might involve the reduction of ADA1 activity (PMID:18302529)
- Suggest that adenosine deaminase can be used to distinguish between tuberculous and malignant pleural effusions. (PMID:18357489)
- Negative association between coronary artery disease and ADA*2 allele is only present in males (PMID:18560234)
- the increased level of ADA activity in the subararachnoid hemorrhage patients with the poor clinical and consciousness level may have resulted from the ischemic cerebral insult (PMID:18597230)
- Elevated serum adenosine deaminase in patients with hyperemesis gravidarum may relate to high levels of E2 and progesterone. (PMID:18673094)
- Human ADA, apart from reducing the adenosine concentration and thus preventing A(1)R desensitization, binds to A(1)R behaving as an allosteric effector that markedly enhances agonist affinity and increases receptor functionality. (PMID:18680557)
- Zygotes with low adenosine deaminase locus 1 activity and low F activity may experience the most favourable intrauterine conditions for a balanced development of the feto-placental unit. (PMID:18768081)
- heterozygosity for the 22G>A variant of ADA, although reducing catalytic activity, does not enhance forearm reactive hyperaemia (PMID:18794722)
- Findings suggest that adenosine deaminase might play a crucial role in the development of aspirin-intolerant-asthma by mediation of A1 and A2A receptors. (PMID:19019667)
- Results hypothesized that altered ADA activity may be associated with altered immunity. (PMID:19026999)
- Serum adenosine deaminase activity was significantly higher in eclamptic pregnant women when compared with healthy pregnant women and non-pregnant women. (PMID:19172437)
- ADA may have a role in the cytokine network of the inflammatory cascade of familial Mediterranean fever; elevated ADA levels may be a part of the activated Th1 response in the disease (PMID:19237091)
- serum catalytic concentration elevated in pregnancy, no difference between gestational diabetes and normal pregnancy (PMID:19521708)
- Decreased paraoxonase activity as well as increased adenosine deaminase and xanthine oxidase activities and nitrite levels indicate that oxidative stress is increased and purine metabolism is altered in pseudoexfoliation syndrome. (PMID:19628957)
- ADA-deficient SCID is associated with a specific microenvironment and bone phenotype characterized by RANKL/OPG imbalance and osteoblast insufficiency. (PMID:19633200)
Cross-species orthologs
4 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | ada | ENSDARG00000003113 |
| mus_musculus | Ada | ENSMUSG00000017697 |
| rattus_norvegicus | Ada | ENSRNOG00000010265 |
| caenorhabditis_elegans | WBGENE00015551 |
Paralogs (2): ADA2 (ENSG00000093072), MAPDA (ENSG00000168803)
Protein
Protein identifiers
Adenosine deaminase — P00813 (reviewed: P00813)
Alternative names: Adenosine aminohydrolase
All UniProt accessions (37): A0A0S2Z381, A0A0S2Z3B9, A0A0S2Z3T6, A0A8Q3SI46, A0A8Q3SI64, A0A8Q3SI69, A0A8Q3SIA9, A0A8Q3SIC0, A0A8Q3SIC7, A0A8Q3SIE4, A0A8Q3SIG8, A0A8Q3SIH0, A0A8Q3SJ25, A0A8Q3SJ50, A0A8Q3SJ57, A0A8Q3SJ63, A0A8Q3WKW4, A0A8Q3WKX5, A0A8Q3WKX8, A0A8Q3WKY2, A0A8Q3WKZ1, A0A8Q3WKZ4, A0A8Q3WKZ5, P00813, A0A8Q3WKZ6, A0A8Q3WKZ9, A0A8Q3WL01, A0A8Q3WL06, A0A8Q3WL32, A0A8Q3WLJ0, A0A8Q3WLK2, A0A8Q3WM09, A0A8Q3WM58, A0A8Q3WM84, F5GWI4, F5GXW0, F5GYD4
UniProt curated annotations — full annotation on UniProt →
Function. Catalyzes the hydrolytic deamination of adenosine and 2-deoxyadenosine. Plays an important role in purine metabolism and in adenosine homeostasis. Modulates signaling by extracellular adenosine, and so contributes indirectly to cellular signaling events. Acts as a positive regulator of T-cell coactivation, by binding DPP4. Its interaction with DPP4 regulates lymphocyte-epithelial cell adhesion. Enhances dendritic cell immunogenicity by affecting dendritic cell costimulatory molecule expression and cytokines and chemokines secretion. Enhances CD4+ T-cell differentiation and proliferation. Acts as a positive modulator of adenosine receptors ADORA1 and ADORA2A, by enhancing their ligand affinity via conformational change. Stimulates plasminogen activation. Plays a role in male fertility. Plays a protective role in early postimplantation embryonic development. Also responsible for the deamination of cordycepin (3’-deoxyadenosine), a fungal natural product that shows antitumor, antibacterial, antifungal, antivirus, and immune regulation properties.
Subunit / interactions. Interacts with DPP4 (via extracellular domain). Interacts with PLG (via Kringle 4 domain); the interaction stimulates PLG activation when in complex with DPP4.
Subcellular location. Cell membrane. Cell junction. Cytoplasmic vesicle lumen. Cytoplasm. Lysosome.
Tissue specificity. Found in all tissues, occurs in large amounts in T-lymphocytes. Expressed at the time of weaning in gastrointestinal tissues.
Disease relevance. Severe combined immunodeficiency autosomal recessive T-cell-negative/B-cell-negative/NK-cell-negative due to adenosine deaminase deficiency (ADASCID) [MIM:102700] An autosomal recessive disorder accounting for about 50% of non-X-linked SCIDs. SCID refers to a genetically and clinically heterogeneous group of rare congenital disorders characterized by impairment of both humoral and cell-mediated immunity, leukopenia, and low or absent antibody levels. Patients with SCID present in infancy with recurrent, persistent infections by opportunistic organisms. The common characteristic of all types of SCID is absence of T-cell-mediated cellular immunity due to a defect in T-cell development. ADA deficiency has been diagnosed in chronically ill teenagers and adults (late or adult onset). Population and newborn screening programs have also identified several healthy individuals with normal immunity who have partial ADA deficiency. The disease is caused by variants affecting the gene represented in this entry.
Activity regulation. Inhibited by Cu(2+) and Hg(2+), coformycin, deoxycoformycin (dCF), 2-deoxyadenosine, 6-methylaminopurine riboside, 2-3-iso-propylidene-adenosine, pentostatin, naringin and erythro-9-(2-hydroxy-3-nonyl)adenine (EHNA).
Cofactor. Binds 1 zinc ion per subunit.
Induction. Up-regulated by hypoxia.
Polymorphism. There is a common allele, ADA*2, also known as the ADA 2 allozyme. It is associated with the reduced metabolism of adenosine to inosine. It specifically enhances deep sleep and slow-wave activity (SWA) during sleep.
Similarity. Belongs to the metallo-dependent hydrolases superfamily. Adenosine and AMP deaminases family.
RefSeq proteins (3): NP_000013, NP_001308979, NP_001308980 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001365 | A_deaminase_dom | Domain |
| IPR006330 | Ado/ade_deaminase | Family |
| IPR006650 | A/AMP_deam_AS | Active_site |
| IPR028893 | A_deaminase | Family |
| IPR032466 | Metal_Hydrolase | Homologous_superfamily |
Pfam: PF00962
Enzyme classification (BRENDA):
- EC 3.5.4.4 — adenosine deaminase (BRENDA: 55 organisms, 135 substrates, 272 inhibitors, 117 Km, 44 kcat entries)
Substrate kinetics (BRENDA)
11 substrates with measured Km, best-characterized 11. Km ranges are aggregated across organisms/conditions.
| Substrate | Km (mM) | Measurements |
|---|---|---|
| ADENOSINE | — | 69 |
| 2’-DEOXYADENOSINE | 0.004–0.56 | 18 |
| 5’-METHYLTHIOADENOSINE | 0.0044–0.376 | 14 |
| 2’,3’-ISOPROPYLIDENE ADENOSINE | 0.29 | 1 |
| 6-CHLOROPURINE RIBOSIDE | 0.31 | 1 |
| 6-CHLOROPURINRIBOSIDE | 0.277 | 1 |
| 6-METHOXYPURINRIBOSIDE | 0.081 | 1 |
| ADENINE | 0.032 | 1 |
| ADENOSINE-3’-MONOPHOSPHATE | 2 | 1 |
| AMP | 0.17 | 1 |
| CAMP | 0.5 | 1 |
Catalyzed reactions (Rhea), 3 shown:
- adenosine + H2O + H(+) = inosine + NH4(+) (RHEA:24408)
- 2’-deoxyadenosine + H2O + H(+) = 2’-deoxyinosine + NH4(+) (RHEA:28190)
- cordycepin + H2O + H(+) = 3’-deoxyinosine + NH4(+) (RHEA:79047)
UniProt features (106 total): sequence variant 35, helix 24, mutagenesis site 15, strand 11, binding site 8, site 3, modified residue 3, turn 2, initiator methionine 1, chain 1, region of interest 1, active site 1, sequence conflict 1
Structure
Experimental structures (PDB)
2 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 3IAR | X-RAY DIFFRACTION | 1.52 |
| 7RTG | X-RAY DIFFRACTION | 2.59 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P00813-F1 | 96.81 | 0.97 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (4): 58 (important for interaction with adenosine receptors and increasing their affinity for agonists); 62 (important for interaction with adenosine receptors and increasing their affinity for agonists); 238 (important for catalytic activity); 217 (proton donor)
Ligand- & substrate-binding residues (8): 295; 296; 15; 17; 17; 19; 184; 214
Post-translational modifications (3): 2, 54, 232
Mutagenesis-validated functional residues (15):
| Position | Phenotype |
|---|---|
| 58 | decreases enzyme activity by reducing substrate affinity and maximum velocity; abolishes adora1 and adora2a modulator fu |
| 60 | moderately reduces enzyme activity; reduces adora1 and adora2a modulation. |
| 61 | decreases enzyme activity by reducing maximum velocity; reduces adora1 modulation. |
| 62 | decreases enzyme activity by reducing substrate affinity and maximum velocity; abolishes adora1 and adora2a modulator fu |
| 64 | moderately reduces enzyme activity; no change in adora1 and adora2a modulation. |
| 65 | decreases enzyme activity by reducing substrate affinity and maximum velocity; reduces adora1 and adora2a modulation. |
| 66 | no change in enzyme activity; no change in adora1 and adora2a modulation. |
| 69 | decreases enzyme activity by reducing maximum velocity; reduces adora2a modulation. |
| 115 | no change in enzyme activity; no change in adora1 and adora2a modulation. |
| 118 | moderately reduces enzyme activity; no change in adora1 and adora2a modulation. |
| 155 | decreases enzyme activity by reducing substrate affinity and maximum velocity. |
| 157 | moderately reduces enzyme activity; no change in adora1 and adora2a modulation. |
| 184 | moderately reduces enzyme activity. |
| 185 | moderately reduces enzyme activity. |
| 194 | no change in enzyme activity. |
Function
Pathways and Gene Ontology
Reactome pathways
11 pathways
| ID | Pathway |
|---|---|
| R-HSA-74217 | Purine salvage |
| R-HSA-9734735 | Defective ADA disrupts (deoxy)adenosine deamination |
| R-HSA-9755088 | Ribavirin ADME |
| R-HSA-1430728 | Metabolism |
| R-HSA-15869 | Metabolism of nucleotides |
| R-HSA-1643685 | Disease |
| R-HSA-5668914 | Diseases of metabolism |
| R-HSA-8956321 | Nucleotide salvage |
| R-HSA-9734207 | Nucleotide salvage defects |
| R-HSA-9735804 | Diseases of nucleotide metabolism |
| R-HSA-9748784 | Drug ADME |
MSigDB gene sets: 780 (showing top):
GOBP_CIRCADIAN_RHYTHM, GOBP_REGULATION_OF_T_CELL_RECEPTOR_SIGNALING_PATHWAY, GOBP_REGULATION_OF_CELL_ACTIVATION, GOBP_REGULATION_OF_ANTIGEN_RECEPTOR_MEDIATED_SIGNALING_PATHWAY, GOBP_NEGATIVE_REGULATION_OF_REPRODUCTIVE_PROCESS, GOBP_G_PROTEIN_COUPLED_PURINERGIC_RECEPTOR_SIGNALING_PATHWAY, GOBP_RESPONSE_TO_NITROGEN_COMPOUND, GOBP_REGULATION_OF_LEUKOCYTE_PROLIFERATION, GOBP_HEPATICOBILIARY_SYSTEM_DEVELOPMENT, GOBP_EMBRYO_DEVELOPMENT_ENDING_IN_BIRTH_OR_EGG_HATCHING, GOBP_POSITIVE_REGULATION_OF_ADAPTIVE_IMMUNE_RESPONSE, GOBP_B_CELL_HOMEOSTASIS, GOBP_BEHAVIOR, GOBP_REGULATION_OF_CALCIUM_MEDIATED_SIGNALING, GOBP_REGULATION_OF_ALPHA_BETA_T_CELL_ACTIVATION
GO Biological Process (67): allantoin metabolic process (GO:0000255), response to hypoxia (GO:0001666), trophectodermal cell differentiation (GO:0001829), liver development (GO:0001889), placenta development (GO:0001890), germinal center B cell differentiation (GO:0002314), germinal center formation (GO:0002467), positive regulation of germinal center formation (GO:0002636), negative regulation of leukocyte migration (GO:0002686), mature B cell apoptotic process (GO:0002901), negative regulation of mature B cell apoptotic process (GO:0002906), adenosine catabolic process (GO:0006154), deoxyadenosine catabolic process (GO:0006157), AMP catabolic process (GO:0006196), xenobiotic metabolic process (GO:0006805), smooth muscle contraction (GO:0006939), cell adhesion (GO:0007155), positive regulation of heart rate (GO:0010460), response to purine-containing compound (GO:0014074), calcium-mediated signaling (GO:0019722), positive regulation of B cell proliferation (GO:0030890), purine nucleotide salvage (GO:0032261), GMP salvage (GO:0032263), T cell differentiation in thymus (GO:0033077), positive regulation of T cell differentiation in thymus (GO:0033089), regulation of cell-cell adhesion mediated by integrin (GO:0033632), B cell proliferation (GO:0042100), T cell activation (GO:0042110), penile erection (GO:0043084), purine-containing compound salvage (GO:0043101), hypoxanthine salvage (GO:0043103), obsolete amide catabolic process (GO:0043605), AMP salvage (GO:0044209), regulation of circadian sleep/wake cycle, sleep (GO:0045187), positive regulation of smooth muscle contraction (GO:0045987), dAMP catabolic process (GO:0046059), dATP catabolic process (GO:0046061), adenosine metabolic process (GO:0046085), inosine biosynthetic process (GO:0046103), xanthine biosynthetic process (GO:0046111)
GO Molecular Function (7): adenosine deaminase activity (GO:0004000), zinc ion binding (GO:0008270), deaminase activity (GO:0019239), 2’-deoxyadenosine deaminase activity (GO:0046936), protein binding (GO:0005515), hydrolase activity (GO:0016787), metal ion binding (GO:0046872)
GO Cellular Component (10): lysosome (GO:0005764), cytosol (GO:0005829), plasma membrane (GO:0005886), external side of plasma membrane (GO:0009897), cell surface (GO:0009986), membrane (GO:0016020), cytoplasmic vesicle lumen (GO:0060205), anchoring junction (GO:0070161), cytoplasm (GO:0005737), cytoplasmic vesicle (GO:0031410)
Reactome top-level categories
Rollup of top-8 pathways:
| Category | Pathways |
|---|---|
| Nucleotide salvage | 1 |
| Nucleotide salvage defects | 1 |
| Drug ADME | 1 |
| Metabolism | 1 |
| Disease | 1 |
| Metabolism of nucleotides | 1 |
| Diseases of nucleotide metabolism | 1 |
| Diseases of metabolism | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 4 |
| metabolic process | 2 |
| hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines | 2 |
| deaminase activity | 2 |
| cytoplasm | 2 |
| response to stress | 1 |
| response to decreased oxygen levels | 1 |
| blastocyst formation | 1 |
| cell differentiation | 1 |
| gland development | 1 |
| hepaticobiliary system development | 1 |
| animal organ development | 1 |
| mature B cell differentiation involved in immune response | 1 |
| adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains | 1 |
| anatomical structure formation involved in morphogenesis | 1 |
| germinal center formation | 1 |
| regulation of germinal center formation | 1 |
| positive regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains | 1 |
| positive regulation of developmental process | 1 |
| negative regulation of immune system process | 1 |
| regulation of leukocyte migration | 1 |
| negative regulation of cell migration | 1 |
| leukocyte migration | 1 |
| B cell homeostasis | 1 |
| B cell apoptotic process | 1 |
| mature B cell apoptotic process | 1 |
| negative regulation of B cell apoptotic process | 1 |
| regulation of mature B cell apoptotic process | 1 |
| adenosine metabolic process | 1 |
| purine ribonucleoside catabolic process | 1 |
| deoxyadenosine metabolic process | 1 |
| 2’-deoxyribonucleoside catabolic process | 1 |
| purine deoxyribonucleoside catabolic process | 1 |
| purine ribonucleotide catabolic process | 1 |
| purine ribonucleoside monophosphate catabolic process | 1 |
| AMP metabolic process | 1 |
| cellular response to xenobiotic stimulus | 1 |
| muscle contraction | 1 |
| cellular process | 1 |
| regulation of heart rate | 1 |
Protein interactions and networks
STRING
3124 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| ADA | DPP4 | P27487 | 997 |
| ADA | PNP | P00491 | 980 |
| ADA | ADAR | P55265 | 952 |
| ADA | ADA2 | Q9NZK5 | 923 |
| ADA | AMPD3 | Q01432 | 910 |
| ADA | AMPD2 | Q01433 | 901 |
| ADA | AMPD1 | P23109 | 894 |
| ADA | ADARB2 | Q9NS39 | 887 |
| ADA | ADK | P55263 | 875 |
| ADA | ADORA2A | P29274 | 864 |
| ADA | FAP | Q12884 | 849 |
| ADA | ADARB1 | P78555 | 833 |
| ADA | AHCY | P23526 | 806 |
| ADA | ADORA1 | P30542 | 792 |
| ADA | ITPA | Q9BY32 | 777 |
IntAct
13 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| ADA | POTEF | psi-mi:“MI:0914”(association) | 0.560 |
| ADA | POTEF | psi-mi:“MI:0915”(physical association) | 0.560 |
| AGPS | psi-mi:“MI:0915”(physical association) | 0.400 | |
| TK2 | psi-mi:“MI:0915”(physical association) | 0.400 | |
| TERF2IP | ADA | psi-mi:“MI:0915”(physical association) | 0.370 |
| ADA | TINF2 | psi-mi:“MI:0915”(physical association) | 0.370 |
| SGCD | ADA | psi-mi:“MI:0915”(physical association) | 0.370 |
| ADA | PIAS2 | psi-mi:“MI:0915”(physical association) | 0.370 |
| PLEKHA7 | PLEKHG3 | psi-mi:“MI:0914”(association) | 0.350 |
| CER1 | ADA | psi-mi:“MI:0914”(association) | 0.350 |
| MPI | ADA | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (50): POTEF (Affinity Capture-MS), ACTB (Affinity Capture-MS), ADA (Affinity Capture-MS), ACP1 (Co-fractionation), APRT (Co-fractionation), ATXN2 (Co-fractionation), ATXN2L (Co-fractionation), SERPINB5 (Co-fractionation), ADA (Affinity Capture-MS), ADA (Affinity Capture-Western), ADA (Affinity Capture-Western), ADA (Affinity Capture-MS), CHEK1 (Negative Genetic), PTEN (Positive Genetic), POTEF (Affinity Capture-MS)
ESM2 similar proteins: A1A4M4, A4JPX7, A6TAC4, A7ZI99, A7ZWZ9, B1J0S7, B1LIN7, B2JQW0, B5XQJ4, B5Z2Q7, B6HZX8, B7L508, B7M300, B7MPB9, B7N8Q9, B7NK03, C1DF10, C1DRJ0, O95620, P00813, P03958, P51020, P56658, Q05AV0, Q0VC13, Q13QH6, Q13VU3, Q17R31, Q32M08, Q3U1C6, Q3Z554, Q46NW8, Q47B13, Q4V831, Q4V9P6, Q503T5, Q56Y42, Q5ZKP6, Q63ZU0, Q640V9
Diamond homologs: A0L2R5, A0PNJ1, A1ABG8, A1JML4, A1RDZ6, A1S1P1, A1T5H1, A3CYL9, A3QJD9, A4W9X4, A4YCD7, A5F4Q2, A5I0I2, A5N6F5, A6T9W8, A6WUH7, A7FHX5, A7FSN7, A7GC28, A7ZM83, A8A0G5, A8GE12, A9KWZ3, B0TT81, B1IHX4, B1IQD2, B1JKL9, B1KY93, B1LER3, B1XF88, B2HDU8, B2K4L5, B2U2C1, B2VK11, B4EVZ1, B4T5A0, B4THP5, B4TVC7, B5F6I4, B5FFC4
SIGNOR signaling
5 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| Pentostatin | “down-regulates activity” | ADA | “chemical inhibition” |
| Adechlorin | “down-regulates activity” | ADA | “chemical inhibition” |
| ADA | “up-regulates activity” | ADORA1 | binding |
| ADA | “down-regulates quantity” | adenosine | “chemical modification” |
| ADA | “up-regulates quantity” | inosine | “chemical modification” |
Disease & clinical
Clinical variants and AI predictions
ClinVar
769 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 69 |
| Likely pathogenic | 79 |
| Uncertain significance | 183 |
| Likely benign | 352 |
| Benign | 28 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1068992 | NC_000020.10:g.(?43264848)(43264949_?)del | Pathogenic |
| 1068993 | NC_000020.10:g.(?43252823)(43255260_?)del | Pathogenic |
| 1069449 | NM_000022.4(ADA):c.421G>T (p.Glu141Ter) | Pathogenic |
| 1070322 | NM_000022.4(ADA):c.33+1G>A | Pathogenic |
| 1339532 | NM_000022.4(ADA):c.870C>A (p.Tyr290Ter) | Pathogenic |
| 1346719 | NM_000022.4(ADA):c.845+2T>C | Pathogenic |
| 1370617 | NM_000022.4(ADA):c.34-11_55del | Pathogenic |
| 1396468 | NM_000022.4(ADA):c.306C>G (p.Tyr102Ter) | Pathogenic |
| 1437148 | NM_000022.4(ADA):c.337G>T (p.Glu113Ter) | Pathogenic |
| 1451616 | NM_000022.4(ADA):c.1024G>T (p.Glu342Ter) | Pathogenic |
| 1456866 | NC_000020.10:g.(?43248475)(43280248_?)del | Pathogenic |
| 1459560 | NC_000020.10:g.(?43251625)(43255215_?)del | Pathogenic |
| 193544 | NM_000022.4(ADA):c.956_960del (p.Glu319fs) | Pathogenic |
| 1956 | NM_000022.4(ADA):c.302G>A (p.Arg101Gln) | Pathogenic |
| 1957 | NM_000022.4(ADA):c.632G>A (p.Arg211His) | Pathogenic |
| 1959 | NM_000022.4(ADA):c.986C>T (p.Ala329Val) | Pathogenic |
| 1960 | NC_000020.11:g.44649961_44653216del | Pathogenic |
| 1968 | NM_000022.4(ADA):c.646G>A (p.Gly216Arg) | Pathogenic |
| 1969294 | NM_000022.4(ADA):c.1009G>T (p.Glu337Ter) | Pathogenic |
| 1970 | NM_000022.4(ADA):c.466C>T (p.Arg156Cys) | Pathogenic |
| 1975 | NM_000022.4(ADA):c.781-3_781delinsTGGAAGAGCAGATCTGG | Pathogenic |
| 1976 | NM_000022.4(ADA):c.33+1G>C | Pathogenic |
| 2034899 | NM_000022.4(ADA):c.307del (p.Ser103fs) | Pathogenic |
| 2130916 | NM_000022.4(ADA):c.976-2A>G | Pathogenic |
| 2138345 | NM_000022.4(ADA):c.976-1G>C | Pathogenic |
| 2161844 | NM_000022.4(ADA):c.1019del (p.Lys340fs) | Pathogenic |
| 2416243 | NM_000022.4(ADA):c.394del (p.Ala131_Leu132insTer) | Pathogenic |
| 265025 | NM_000022.4(ADA):c.478+1G>A | Pathogenic |
| 2680692 | NM_000022.4(ADA):c.760C>T (p.Gln254Ter) | Pathogenic |
| 2680706 | NM_000022.4(ADA):c.482G>A (p.Trp161Ter) | Pathogenic |
SpliceAI
2912 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 20:44589786:T:TA | acceptor_gain | 1.0000 |
| 20:44589795:A:AG | acceptor_gain | 1.0000 |
| 20:44589796:G:GG | acceptor_gain | 1.0000 |
| 20:44589796:GA:G | acceptor_gain | 1.0000 |
| 20:44614528:CCACA:C | acceptor_loss | 1.0000 |
| 20:44614529:CACAG:C | acceptor_loss | 1.0000 |
| 20:44614532:A:AG | acceptor_gain | 1.0000 |
| 20:44614533:G:GG | acceptor_gain | 1.0000 |
| 20:44614533:G:T | acceptor_loss | 1.0000 |
| 20:44614533:GGC:G | acceptor_gain | 1.0000 |
| 20:44614533:GGCCT:G | acceptor_gain | 1.0000 |
| 20:44614638:G:GT | donor_gain | 1.0000 |
| 20:44614649:GGCT:G | donor_gain | 1.0000 |
| 20:44614650:GCTG:G | donor_gain | 1.0000 |
| 20:44614657:GC:G | donor_gain | 1.0000 |
| 20:44614664:G:GT | donor_gain | 1.0000 |
| 20:44620412:C:CT | acceptor_gain | 1.0000 |
| 20:44620427:CA:C | acceptor_gain | 1.0000 |
| 20:44620428:A:AC | acceptor_gain | 1.0000 |
| 20:44620428:A:C | acceptor_gain | 1.0000 |
| 20:44620435:C:CT | acceptor_gain | 1.0000 |
| 20:44620436:A:T | acceptor_gain | 1.0000 |
| 20:44621014:TCA:T | donor_loss | 1.0000 |
| 20:44621015:CA:C | donor_loss | 1.0000 |
| 20:44621016:A:AC | donor_gain | 1.0000 |
| 20:44621016:ACC:A | donor_loss | 1.0000 |
| 20:44621016:ACCAG:A | donor_gain | 1.0000 |
| 20:44621017:C:CC | donor_gain | 1.0000 |
| 20:44621017:CCAG:C | donor_gain | 1.0000 |
| 20:44621017:CCAGC:C | donor_gain | 1.0000 |
AlphaMissense
2382 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 20:44621109:T:A | D295V | 0.999 |
| 20:44621108:A:C | D295E | 0.998 |
| 20:44621108:A:T | D295E | 0.998 |
| 20:44621110:C:G | D295H | 0.998 |
| 20:44622647:G:C | C262W | 0.998 |
| 20:44621109:T:G | D295A | 0.996 |
| 20:44621110:C:A | D295Y | 0.996 |
| 20:44621114:G:C | N293K | 0.996 |
| 20:44621114:G:T | N293K | 0.996 |
| 20:44622635:G:C | S266R | 0.996 |
| 20:44622635:G:T | S266R | 0.996 |
| 20:44622637:T:G | S266R | 0.996 |
| 20:44629070:A:C | F65L | 0.996 |
| 20:44629070:A:T | F65L | 0.996 |
| 20:44629072:A:G | F65L | 0.996 |
| 20:44620392:C:G | A329P | 0.995 |
| 20:44621109:T:C | D295G | 0.995 |
| 20:44622895:G:C | H238Q | 0.995 |
| 20:44622895:G:T | H238Q | 0.995 |
| 20:44636273:G:C | H17D | 0.995 |
| 20:44620388:G:T | A330D | 0.994 |
| 20:44621105:G:C | D296E | 0.994 |
| 20:44621105:G:T | D296E | 0.994 |
| 20:44622648:C:T | C262Y | 0.994 |
| 20:44636279:G:C | H15D | 0.994 |
| 20:44621122:A:G | S291P | 0.993 |
| 20:44622649:A:G | C262R | 0.993 |
| 20:44622897:G:C | H238D | 0.993 |
| 20:44623045:G:C | H214D | 0.993 |
| 20:44626509:A:C | S103R | 0.993 |
dbSNP variants (sampled 300 via entrez): RS1000084522 (20:44646633 G>A), RS1000158775 (20:44640238 A>C), RS1000232997 (20:44641268 G>A), RS1000455538 (20:44629463 C>G), RS1000477794 (20:44646342 G>A), RS1000521374 (20:44642460 C>T), RS1000634827 (20:44636622 G>A), RS1000694875 (20:44635294 G>A), RS1000735560 (20:44645808 C>T), RS1000844707 (20:44631448 G>A), RS1000953688 (20:44622733 CCCT>C), RS1001005035 (20:44619093 T>C), RS1001098479 (20:44619486 G>A,C), RS1001148971 (20:44652700 G>A), RS1001399284 (20:44624768 T>A,C)
Disease associations
OMIM: gene MIM:608958 | disease phenotypes: MIM:102700, MIM:601457
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-negative, due to adenosine deaminase deficiency | Definitive | Autosomal recessive |
| Omenn syndrome | Supportive | Autosomal recessive |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-negative, due to adenosine deaminase deficiency | Definitive | AR |
Mondo (4): severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-negative, due to adenosine deaminase deficiency (MONDO:0007064), severe combined immunodeficiency (MONDO:0015974), severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive (MONDO:0011086), Omenn syndrome (MONDO:0011338)
Orphanet (3): Severe combined immunodeficiency due to adenosine deaminase deficiency (Orphanet:277), Severe combined immunodeficiency (Orphanet:183660), Severe combined immunodeficiency due to complete RAG1/2 deficiency (Orphanet:331206)
HPO phenotypes
74 total (30 of 74 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000100 | Nephrotic syndrome |
| HP:0000246 | Sinusitis |
| HP:0000403 | Recurrent otitis media |
| HP:0000821 | Hypothyroidism |
| HP:0000907 | Anterior rib cupping |
| HP:0000926 | Platyspondyly |
| HP:0000944 | Abnormal metaphysis morphology |
| HP:0000958 | Dry skin |
| HP:0000969 | Edema |
| HP:0000988 | Skin rash |
| HP:0000989 | Pruritus |
| HP:0001019 | Erythroderma |
| HP:0001072 | Thickened skin |
| HP:0001270 | Motor delay |
| HP:0001442 | Typified by somatic mosaicism |
| HP:0001508 | Failure to thrive |
| HP:0001596 | Alopecia |
| HP:0001744 | Splenomegaly |
| HP:0001831 | Short toe |
| HP:0001880 | Increased total eosinophil count |
| HP:0001888 | Decreased total lymphocyte count |
| HP:0001890 | Autoimmune hemolytic anemia |
| HP:0001903 | Anemia |
| HP:0001945 | Fever |
| HP:0001954 | Recurrent fever |
| HP:0001967 | Diffuse mesangial sclerosis |
| HP:0001973 | Autoimmune thrombocytopenia |
| HP:0001974 | Increased total leukocyte count |
| HP:0002014 | Diarrhea |
GWAS associations
6 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST001728_19 | Ulcerative colitis | 1.000000e-43 |
| GCST004131_41 | Inflammatory bowel disease | 1.000000e-17 |
| GCST004133_4 | Ulcerative colitis | 4.000000e-30 |
| GCST012020_507 | Serum metabolite levels | 4.000000e-26 |
| GCST012020_527 | Serum metabolite levels | 2.000000e-24 |
| GCST012021_68 | Serum metabolite levels | 2.000000e-24 |
MeSH disease descriptors (3)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D016511 | Severe Combined Immunodeficiency | C16.320.798.750; C16.614.815; C18.452.284.800; C20.673.795.750 |
| C563311 | Severe Combined Immunodeficiency, Autosomal Recessive, T Cell-Negative, B Cell-Negative, NK Cell-Positive (supp.) | |
| C531816 | Severe combined immunodeficiency due to adenosine deaminase deficiency (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL1910 (SINGLE PROTEIN)
Molecules with ChEMBL bioactivity
3 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 105,043 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).
| Molecule | Name | Phase | Patents |
|---|---|---|---|
| CHEMBL1580 | PENTOSTATIN | 4 | 103,826 |
| CHEMBL441738 | AFAMELANOTIDE | 4 | 602 |
| CHEMBL284483 | COFORMYCIN | 2 | 615 |
PharmGKB: 1 entry (VIP=true, CPIC=false)
PharmGKB variants
5 variants.
| Variant | Genes | Level | Score | #Clin annots | Drugs |
|---|---|---|---|---|---|
| rs244076 | ADA | 0.00 | 0 | ||
| rs73598374 | ADA | 0.00 | 0 | ||
| rs2057638 | ADA | 0.00 | 0 | ||
| rs6017375 | ADA | 0.00 | 0 | ||
| rs371927 | ADA | 0.00 | 0 |
GtoPdb / IUPHAR curated pharmacology
(IUPHAR/BPS Guide to Pharmacology — expert-curated)
Target class: enzyme — Adenosine turnover
Most potent curated ligand interactions (2 total), top 2:
| Ligand | Action | Affinity | Parameter |
|---|---|---|---|
| pentostatin | Inhibition | 10.8 | pIC50 |
| EHNA | Inhibition | 8.8 | pKi |
Binding affinities (BindingDB)
31 measured of 34 human assays (34 total across all organisms); most potent 31 below. Values come from heterogeneous assays and are not directly comparable.
| Ligand | Measure | Value |
|---|---|---|
| Covidarabine | KI | 0.033 nM |
| 1-[(2R)-4-{5-[3-(4-chlorophenyl)propoxy]-1-methyl-1H-indol-3-yl}-1-hydroxybutan-2-yl]-1H-imidazole-4-carboxamide | KI | 4.9 nM |
| 1-[(2R)-4-{6-[(benzylcarbamoyl)amino]-1H-indol-1-yl}-1-hydroxybutan-2-yl]-1H-imidazole-4-carboxamide | KI | 7.5 nM |
| 1-[(2R)-1-hydroxy-4-{6-[3-(1-methyl-1H-1,3-benzodiazol-2-yl)propanamido]-1H-indol-1-yl}butan-2-yl]-1H-imidazole-4-carboxamide | KI | 7.7 nM |
| 1-[(3R,4S)-4-hydroxy-1-(naphthalen-2-yloxy)pentan-3-yl]-1H-imidazole-4-carboxamide | KI | 9.8 nM |
| 1-[(2R)-1-hydroxy-4-[6-(5-phenylpentanamido)-1H-indol-1-yl]butan-2-yl]-1H-imidazole-4-carboxamide | KI | 11 nM |
| 1-[(3R,4S)-4-hydroxy-1-(naphthalen-1-yl)pentan-3-yl]-1H-imidazole-4-carboxamide | KI | 11 nM |
| 1-[(2R)-1-hydroxy-4-[6-(4-phenylbutoxy)-1H-indol-1-yl]butan-2-yl]-1H-imidazole-4-carboxamide | KI | 12 nM |
| 1-[(2R)-4-{6-[3-(4-chlorophenyl)propoxy]-1H-indol-1-yl}-1-hydroxybutan-2-yl]-1H-imidazole-4-carboxamide | KI | 13 nM |
| 1-[(2R)-4-[5-(hexyloxy)-1-methyl-1H-indol-3-yl]-1-hydroxybutan-2-yl]-1H-imidazole-4-carboxamide | KI | 13 nM |
| 1-[(3R,4S)-1-(2,3-dichlorophenyl)-4-hydroxypentan-3-yl]-1H-imidazole-4-carboxamide | KI | 13 nM |
| 1-[(2R)-1-hydroxy-4-[6-(4-phenylbutanamido)-1H-indol-1-yl]butan-2-yl]-1H-imidazole-4-carboxamide | KI | 16 nM |
| 1-[(2R)-1-hydroxy-4-{6-[3-(pyridin-3-yl)propanamido]-1H-indol-1-yl}butan-2-yl]-1H-imidazole-4-carboxamide | KI | 17 nM |
| 1-[(2R)-1-hydroxy-4-[6-(3-phenylpropoxy)-1H-indol-1-yl]butan-2-yl]-1H-imidazole-4-carboxamide | KI | 17 nM |
| 1-[(2R)-4-(6-hexanamido-1H-indol-1-yl)-1-hydroxybutan-2-yl]-1H-imidazole-4-carboxamide | KI | 24 nM |
| 1-[(2R)-1-hydroxy-4-[1-methyl-5-(3-phenylpropoxy)-1H-indol-3-yl]butan-2-yl]-1H-imidazole-4-carboxamide | KI | 26 nM |
| 1-[(2R)-1-hydroxy-4-[6-(3-phenylpropanamido)-1H-indol-1-yl]butan-2-yl]-1H-imidazole-4-carboxamide | KI | 30 nM |
| 1-[(2R)-1-hydroxy-4-{6-[4-(4-methylphenyl)butanamido]-1H-indol-1-yl}butan-2-yl]-1H-imidazole-4-carboxamide | KI | 34 nM |
| 3-(6-amino-9H-purin-9-yl)nonan-2-ol | KI | 37 nM |
| 1-[(2R)-1-hydroxy-4-{6-[3-(4-methylphenyl)propanamido]-1H-indol-1-yl}butan-2-yl]-1H-imidazole-4-carboxamide | KI | 38 nM |
| 1-[(2R)-4-[6-(hexyloxy)-1H-indol-1-yl]-1-hydroxybutan-2-yl]-1H-imidazole-4-carboxamide | KI | 55 nM |
| 1-[(2R)-1-hydroxy-4-{6-[3-(4-methoxyphenyl)propanamido]-1H-indol-1-yl}butan-2-yl]-1H-imidazole-4-carboxamide | KI | 57 nM |
| 1-[(2R)-1-hydroxy-4-[6-(6-phenylhexanamido)-1H-indol-1-yl]butan-2-yl]-1H-imidazole-4-carboxamide | KI | 91 nM |
| 1-[(2R)-4-(6-butoxy-1H-indol-1-yl)-1-hydroxybutan-2-yl]-1H-imidazole-4-carboxamide | KI | 240 nM |
| imidazole-4-carboxamide derivative, 3 | KI | 680 nM |
| 2-(4-{5-[(1H-1,3-benzodiazol-2-ylamino)methyl]thiophen-2-yl}-1,3-thiazol-2-yl)guanidine | KI | 1200 nM |
| 1-[(2R)-4-(6-acetamido-1H-indol-1-yl)-1-hydroxybutan-2-yl]-1H-imidazole-4-carboxamide | KI | 1300 nM |
| 1-[(2R)-1-hydroxy-4-[5-(3-phenylpropoxy)-1H-indol-1-yl]butan-2-yl]-1H-imidazole-4-carboxamide | KI | 1900 nM |
| 1-(1-hydroxy-4-phenylbutan-2-yl)-1H-imidazole-4-carboxamide | KI | 5900 nM |
| 1-[(2R)-4-[5-(hexyloxy)-1H-indol-1-yl]-1-hydroxybutan-2-yl]-1H-imidazole-4-carboxamide | KI | 6200 nM |
| 1-(2-hydroxy-1-phenylethyl)-1H-imidazole-4-carboxamide | KI | 54000 nM |
ChEMBL bioactivities
255 potent at pChembl≥5 of 258 total, top 50 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 11.00 | Ki | 0.01 | nM | COFORMYCIN |
| 11.00 | Ki | 0.01 | nM | CONFORMYCIN |
| 11.00 | Ki | 0.01 | nM | CHEMBL1651377 |
| 10.59 | Ki | 0.026 | nM | PENTOSTATIN |
| 10.48 | Ki | 0.033 | nM | PENTOSTATIN |
| 10.28 | Ki | 0.053 | nM | CHEMBL1651379 |
| 10.00 | Ki | 0.1 | nM | PENTOSTATIN |
| 10.00 | Ki | 0.1 | nM | COFORMYCIN |
| 9.96 | Ki | 0.11 | nM | COFORMYCIN |
| 9.40 | Ki | 0.4 | nM | EHNA |
| 9.40 | IC50 | 0.4 | nM | CHEMBL5864154 |
| 9.30 | Ki | 0.5 | nM | PENTOSTATIN |
| 9.30 | IC50 | 0.5 | nM | CHEMBL5818178 |
| 9.22 | IC50 | 0.6 | nM | CHEMBL6005828 |
| 9.22 | IC50 | 0.6 | nM | CHEMBL5755688 |
| 9.15 | IC50 | 0.7 | nM | CHEMBL5813207 |
| 9.15 | IC50 | 0.7 | nM | CHEMBL6000417 |
| 9.05 | IC50 | 0.9 | nM | CHEMBL6063238 |
| 9.05 | IC50 | 0.9 | nM | CHEMBL6059148 |
| 9.05 | IC50 | 0.9 | nM | CHEMBL5868228 |
| 9.00 | Ki | 1 | nM | (+)-EHNA |
| 9.00 | IC50 | 1 | nM | CHEMBL5911082 |
| 9.00 | IC50 | 1 | nM | CHEMBL5805964 |
| 8.96 | IC50 | 1.1 | nM | CHEMBL5879972 |
| 8.92 | IC50 | 1.2 | nM | CHEMBL5785869 |
| 8.92 | IC50 | 1.2 | nM | CHEMBL5884259 |
| 8.89 | IC50 | 1.3 | nM | CHEMBL6004227 |
| 8.89 | IC50 | 1.3 | nM | CHEMBL5983193 |
| 8.85 | IC50 | 1.4 | nM | CHEMBL5956235 |
| 8.85 | IC50 | 1.4 | nM | CHEMBL5780320 |
| 8.82 | IC50 | 1.5 | nM | CHEMBL5783482 |
| 8.82 | IC50 | 1.5 | nM | CHEMBL5972430 |
| 8.80 | IC50 | 1.6 | nM | CHEMBL5759921 |
| 8.80 | IC50 | 1.6 | nM | CHEMBL5997347 |
| 8.77 | IC50 | 1.7 | nM | CHEMBL5809185 |
| 8.77 | IC50 | 1.7 | nM | CHEMBL5895135 |
| 8.74 | IC50 | 1.8 | nM | CHEMBL5998906 |
| 8.72 | IC50 | 1.9 | nM | CHEMBL5788860 |
| 8.72 | IC50 | 1.9 | nM | CHEMBL5785714 |
| 8.72 | IC50 | 1.9 | nM | CHEMBL5894696 |
| 8.70 | Ki | 2 | nM | (+)-EHNA |
| 8.70 | IC50 | 2 | nM | CHEMBL5941353 |
| 8.70 | IC50 | 2 | nM | CHEMBL5958825 |
| 8.70 | IC50 | 2 | nM | CHEMBL5767359 |
| 8.68 | IC50 | 2.1 | nM | CHEMBL5863520 |
| 8.66 | IC50 | 2.2 | nM | CHEMBL6039461 |
| 8.66 | IC50 | 2.2 | nM | CHEMBL5787523 |
| 8.66 | IC50 | 2.2 | nM | CHEMBL6051107 |
| 8.64 | IC50 | 2.3 | nM | CHEMBL6029118 |
| 8.64 | IC50 | 2.3 | nM | CHEMBL5814876 |
PubChem BioAssay actives
108 with measured affinity, of 170 total; 50 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| (2R,3R,4S,5R)-2-[(8R)-8-hydroxy-7,8-dihydro-4H-imidazo[4,5-d][1,3]diazepin-3-yl]-5-(hydroxymethyl)oxolane-3,4-diol | 1895861: Binding affinity to ADA (unknown origin) assessed as inhibition constant | ki | <0.0001 | uM |
| Pentostatin | 1578775: Inhibition of human erythrocytes ADA assessed as equilibrium dissociation constant by measuring reduction in formation of inosine using adenosine as substrate | ki | <0.0001 | uM |
| (3S,4R,5S)-2-[(8R)-8-hydroxy-7,8-dihydro-6H-imidazo[4,5-b]azepin-3-yl]-5-(hydroxymethyl)oxolane-3,4-diol | 33845: Binding affinity towards Adenosine deaminase | ki | <0.0001 | uM |
| (2R,3R,4S,5R)-2-[(8R)-8-hydroxy-8H-imidazo[4,5-d][1,3]diazepin-3-yl]-5-(hydroxymethyl)oxolane-3,4-diol | 554264: Inhibition of adenosine deaminase | ki | <0.0001 | uM |
| (8R)-3-[(2R,4S,5R)-4-hydroxy-5-(hydroxymethyl)oxolan-2-yl]-8H-imidazo[4,5-d][1,3]diazepin-8-ol | 554264: Inhibition of adenosine deaminase | ki | <0.0001 | uM |
| (8R)-3-[(2S,4R,5S)-4-hydroxy-5-(hydroxymethyl)oxolan-2-yl]-7,8-dihydro-6H-imidazo[4,5-b]azepin-8-ol | 33845: Binding affinity towards Adenosine deaminase | ki | <0.0001 | uM |
| (2R)-1-(4-aminopyrazolo[3,4-d]pyrimidin-2-yl)decan-2-ol | 554264: Inhibition of adenosine deaminase | ki | 0.0001 | uM |
| (2R,3S)-3-(6-aminopurin-9-yl)nonan-2-ol | 33846: Compound was evaluated for the inhibition of adenosine deaminase | ki | 0.0004 | uM |
| (2S,3R)-3-(6-aminopurin-9-yl)nonan-2-ol | 1895861: Binding affinity to ADA (unknown origin) assessed as inhibition constant | ki | 0.0010 | uM |
| 1-[(2R)-4-[5-[3-(4-chlorophenyl)propoxy]-1-methylindol-3-yl]-1-hydroxybutan-2-yl]imidazole-4-carboxamide | 1798271: ADA Inhibition Assay from Article 10.1021/jm0306374: “Structure-based design, synthesis, and structure-activity relationship studies of novel non-nucleoside adenosine deaminase inhibitors.” | ki | 0.0049 | uM |
| 3-(4-aminoimidazo[4,5-c]pyridin-1-yl)nonan-2-ol | 33848: Inhibition constant (Ki) against Human erythrocyte adenosine deaminase | ki | 0.0063 | uM |
| 1-[(2R)-4-[6-(benzylcarbamoylamino)indol-1-yl]-1-hydroxybutan-2-yl]imidazole-4-carboxamide | 1798271: ADA Inhibition Assay from Article 10.1021/jm0306374: “Structure-based design, synthesis, and structure-activity relationship studies of novel non-nucleoside adenosine deaminase inhibitors.” | ki | 0.0075 | uM |
| 1-[(2R)-1-hydroxy-4-[6-[3-(1-methylbenzimidazol-2-yl)propanoylamino]indol-1-yl]butan-2-yl]imidazole-4-carboxamide | 1798269: ADA Inhibition Assay from Article 10.1021/ja038606l: “A highly potent non-nucleoside adenosine deaminase inhibitor: efficient drug discovery by intentional lead hybridization.” | ki | 0.0077 | uM |
| 1-[(3R,4S)-1-[2-(4-chlorophenyl)-1,3-benzoxazol-7-yl]-4-hydroxypentan-3-yl]imidazole-4-carboxamide | 240756: Inhibitory concentration against adenosine deaminase | ic50 | 0.0086 | uM |
| 1-[(3R,4S)-1-[2-(4-chlorophenyl)-1,3-benzoxazol-4-yl]-4-hydroxypentan-3-yl]imidazole-4-carboxamide | 240756: Inhibitory concentration against adenosine deaminase | ic50 | 0.0087 | uM |
| 1-[(3R,4S)-4-hydroxy-1-naphthalen-2-yloxypentan-3-yl]imidazole-4-carboxamide | 1798272: ADA Inhibition Assay from Article 10.1021/jm0499559: “Structure-based design and synthesis of non-nucleoside, potent, and orally bioavailable adenosine deaminase inhibitors.” | ki | 0.0098 | uM |
| 1-[(2R)-1-hydroxy-4-[6-(5-phenylpentanoylamino)indol-1-yl]butan-2-yl]imidazole-4-carboxamide | 1798271: ADA Inhibition Assay from Article 10.1021/jm0306374: “Structure-based design, synthesis, and structure-activity relationship studies of novel non-nucleoside adenosine deaminase inhibitors.” | ki | 0.0110 | uM |
| 1-[(3R,4S)-4-hydroxy-1-naphthalen-1-ylpentan-3-yl]imidazole-4-carboxamide | 1798272: ADA Inhibition Assay from Article 10.1021/jm0499559: “Structure-based design and synthesis of non-nucleoside, potent, and orally bioavailable adenosine deaminase inhibitors.” | ki | 0.0110 | uM |
| 1-[(2R)-1-hydroxy-4-[6-(4-phenylbutoxy)indol-1-yl]butan-2-yl]imidazole-4-carboxamide | 1798271: ADA Inhibition Assay from Article 10.1021/jm0306374: “Structure-based design, synthesis, and structure-activity relationship studies of novel non-nucleoside adenosine deaminase inhibitors.” | ki | 0.0120 | uM |
| 1-[(2R)-4-(5-hexoxy-1-methylindol-3-yl)-1-hydroxybutan-2-yl]imidazole-4-carboxamide | 1798271: ADA Inhibition Assay from Article 10.1021/jm0306374: “Structure-based design, synthesis, and structure-activity relationship studies of novel non-nucleoside adenosine deaminase inhibitors.” | ki | 0.0130 | uM |
| 1-[(2R)-4-[6-[3-(4-chlorophenyl)propoxy]indol-1-yl]-1-hydroxybutan-2-yl]imidazole-4-carboxamide | 1798271: ADA Inhibition Assay from Article 10.1021/jm0306374: “Structure-based design, synthesis, and structure-activity relationship studies of novel non-nucleoside adenosine deaminase inhibitors.” | ki | 0.0130 | uM |
| 1-[(3R,4S)-1-(2,3-dichlorophenyl)-4-hydroxypentan-3-yl]imidazole-4-carboxamide | 1798272: ADA Inhibition Assay from Article 10.1021/jm0499559: “Structure-based design and synthesis of non-nucleoside, potent, and orally bioavailable adenosine deaminase inhibitors.” | ki | 0.0130 | uM |
| 1-[(2R)-1-hydroxy-4-[6-(4-phenylbutanoylamino)indol-1-yl]butan-2-yl]imidazole-4-carboxamide | 1798271: ADA Inhibition Assay from Article 10.1021/jm0306374: “Structure-based design, synthesis, and structure-activity relationship studies of novel non-nucleoside adenosine deaminase inhibitors.” | ki | 0.0160 | uM |
| (4S)-4-[[(2S)-2-[[(2S)-2-[[(2S)-2-[[(2S)-2-acetamido-3-hydroxypropanoyl]amino]-3-(4-hydroxyphenyl)propanoyl]amino]-3-hydroxypropanoyl]amino]hexanoyl]amino]-5-[[(2S)-1-[[(2R)-1-[[(2S)-1-[[(2S)-1-[[2-[[(2S)-6-amino-1-[(2S)-2-[[(2S)-1-amino-3-methyl-1-oxobutan-2-yl]carbamoyl]pyrrolidin-1-yl]-1-oxohexan-2-yl]amino]-2-oxoethyl]amino]-3-(1H-indol-3-yl)-1-oxopropan-2-yl]amino]-5-carbamimidamido-1-oxopentan-2-yl]amino]-1-oxo-3-phenylpropan-2-yl]amino]-3-(1H-imidazol-4-yl)-1-oxopropan-2-yl]amino]-5-oxopentanoic acid | 33850: Inhibition of human adenosine deaminase (ADA) | ki | 0.0160 | uM |
| 1-[(2R)-1-hydroxy-4-[6-(3-phenylpropoxy)indol-1-yl]butan-2-yl]imidazole-4-carboxamide | 1798271: ADA Inhibition Assay from Article 10.1021/jm0306374: “Structure-based design, synthesis, and structure-activity relationship studies of novel non-nucleoside adenosine deaminase inhibitors.” | ki | 0.0170 | uM |
| 1-[(2R)-1-hydroxy-4-[6-(3-pyridin-3-ylpropanoylamino)indol-1-yl]butan-2-yl]imidazole-4-carboxamide | 1798271: ADA Inhibition Assay from Article 10.1021/jm0306374: “Structure-based design, synthesis, and structure-activity relationship studies of novel non-nucleoside adenosine deaminase inhibitors.” | ki | 0.0170 | uM |
| 1-[(2R)-4-[6-(hexanoylamino)indol-1-yl]-1-hydroxybutan-2-yl]imidazole-4-carboxamide | 1798271: ADA Inhibition Assay from Article 10.1021/jm0306374: “Structure-based design, synthesis, and structure-activity relationship studies of novel non-nucleoside adenosine deaminase inhibitors.” | ki | 0.0240 | uM |
| 1-[(2R)-1-hydroxy-4-[1-methyl-5-(3-phenylpropoxy)indol-3-yl]butan-2-yl]imidazole-4-carboxamide | 1798271: ADA Inhibition Assay from Article 10.1021/jm0306374: “Structure-based design, synthesis, and structure-activity relationship studies of novel non-nucleoside adenosine deaminase inhibitors.” | ki | 0.0260 | uM |
| 1-[(2R)-1-hydroxy-4-[6-(3-phenylpropanoylamino)indol-1-yl]butan-2-yl]imidazole-4-carboxamide | 1798271: ADA Inhibition Assay from Article 10.1021/jm0306374: “Structure-based design, synthesis, and structure-activity relationship studies of novel non-nucleoside adenosine deaminase inhibitors.” | ki | 0.0300 | uM |
| 1-[(2R)-1-hydroxy-4-[6-[4-(4-methylphenyl)butanoylamino]indol-1-yl]butan-2-yl]imidazole-4-carboxamide | 1798271: ADA Inhibition Assay from Article 10.1021/jm0306374: “Structure-based design, synthesis, and structure-activity relationship studies of novel non-nucleoside adenosine deaminase inhibitors.” | ki | 0.0340 | uM |
| 3-(6-aminopurin-9-yl)nonan-2-ol | 1798270: ADA Inhibition Assay from Article 10.1016/s0960-894x(03)00026-x: “Structure-based de novo design of non-nucleoside adenosine deaminase inhibitors.” | ki | 0.0370 | uM |
| 1-[(2R)-1-hydroxy-4-[6-[3-(4-methylphenyl)propanoylamino]indol-1-yl]butan-2-yl]imidazole-4-carboxamide | 1798271: ADA Inhibition Assay from Article 10.1021/jm0306374: “Structure-based design, synthesis, and structure-activity relationship studies of novel non-nucleoside adenosine deaminase inhibitors.” | ki | 0.0380 | uM |
| (2R,3S,4R,5R)-2-(hydroxymethyl)-5-(triazolo[4,5-d]pyrimidin-3-yl)oxolane-3,4-diol | 554264: Inhibition of adenosine deaminase | ki | 0.0400 | uM |
| 1-[(2R)-4-(6-hexoxyindol-1-yl)-1-hydroxybutan-2-yl]imidazole-4-carboxamide | 1798271: ADA Inhibition Assay from Article 10.1021/jm0306374: “Structure-based design, synthesis, and structure-activity relationship studies of novel non-nucleoside adenosine deaminase inhibitors.” | ki | 0.0550 | uM |
| 1-[(2R)-1-hydroxy-4-[6-[3-(4-methoxyphenyl)propanoylamino]indol-1-yl]butan-2-yl]imidazole-4-carboxamide | 1798271: ADA Inhibition Assay from Article 10.1021/jm0306374: “Structure-based design, synthesis, and structure-activity relationship studies of novel non-nucleoside adenosine deaminase inhibitors.” | ki | 0.0570 | uM |
| (2S,3S)-3-(6-aminopurin-9-yl)nonan-2-ol | 33846: Compound was evaluated for the inhibition of adenosine deaminase | ki | 0.0800 | uM |
| 1-[(2R)-1-hydroxy-4-[6-(6-phenylhexanoylamino)indol-1-yl]butan-2-yl]imidazole-4-carboxamide | 1798271: ADA Inhibition Assay from Article 10.1021/jm0306374: “Structure-based design, synthesis, and structure-activity relationship studies of novel non-nucleoside adenosine deaminase inhibitors.” | ki | 0.0910 | uM |
| (2R,3R,4S,5R)-2-(7-aminoimidazo[4,5-b]pyridin-3-yl)-5-(hydroxymethyl)oxolane-3,4-diol | 554264: Inhibition of adenosine deaminase | ki | 0.1000 | uM |
| 3-(7-aminoimidazo[4,5-b]pyridin-3-yl)nonan-2-ol | 33848: Inhibition constant (Ki) against Human erythrocyte adenosine deaminase | ki | 0.1200 | uM |
| (2R,3R)-3-(6-aminopurin-9-yl)nonan-2-ol | 33846: Compound was evaluated for the inhibition of adenosine deaminase | ki | 0.1220 | uM |
| 1-[(2R)-4-(6-butoxyindol-1-yl)-1-hydroxybutan-2-yl]imidazole-4-carboxamide | 1798271: ADA Inhibition Assay from Article 10.1021/jm0306374: “Structure-based design, synthesis, and structure-activity relationship studies of novel non-nucleoside adenosine deaminase inhibitors.” | ki | 0.2400 | uM |
| 4-methyl-3-[(2-methyl-6-pyridin-3-ylpyrazolo[3,4-d]pyrimidin-4-yl)amino]-N-[3-(trifluoromethyl)phenyl]benzamide | 2147803: Binding affinity to human ADA incubated for 45 mins by Kinobead based pull down assay | kd | 0.2462 | uM |
| 1-(1-hydroxy-4-naphthalen-1-ylbutan-2-yl)imidazole-4-carboxamide | 240756: Inhibitory concentration against adenosine deaminase | ic50 | 0.5700 | uM |
| 2-[4-[5-[(1H-benzimidazol-2-ylamino)methyl]thiophen-2-yl]-1,3-thiazol-2-yl]guanidine | 240756: Inhibitory concentration against adenosine deaminase | ic50 | 0.7000 | uM |
| 2-[4-[5-[(1H-indol-2-ylamino)methyl]thiophen-2-yl]-1,3-thiazol-2-yl]guanidine | 33977: Binding affinity towards adenosine deaminase | ki | 1.2000 | uM |
| 1-[(2R)-4-(6-acetamidoindol-1-yl)-1-hydroxybutan-2-yl]imidazole-4-carboxamide | 1798271: ADA Inhibition Assay from Article 10.1021/jm0306374: “Structure-based design, synthesis, and structure-activity relationship studies of novel non-nucleoside adenosine deaminase inhibitors.” | ki | 1.3000 | uM |
| 1-[(2R)-1-hydroxy-4-[5-(3-phenylpropoxy)indol-1-yl]butan-2-yl]imidazole-4-carboxamide | 1798271: ADA Inhibition Assay from Article 10.1021/jm0306374: “Structure-based design, synthesis, and structure-activity relationship studies of novel non-nucleoside adenosine deaminase inhibitors.” | ki | 1.9000 | uM |
| (2R,3R,4R,5R)-2-[6-amino-2-(triazol-1-yl)purin-9-yl]-5-(hydroxymethyl)-3-methyloxolane-3,4-diol | 626235: Inhibition of adenosine deaminase assessed as conversion of adenosine to inosine | ic50 | 3.7000 | uM |
| 1-(1-hydroxy-4-phenylbutan-2-yl)imidazole-4-carboxamide | 1798269: ADA Inhibition Assay from Article 10.1021/ja038606l: “A highly potent non-nucleoside adenosine deaminase inhibitor: efficient drug discovery by intentional lead hybridization.” | ki | 5.9000 | uM |
| 1-[(2R)-1-hydroxy-4-phenylbutan-2-yl]imidazole-4-carboxamide | 33847: In vitro binding affinity towards human adenosine deaminase (ADA) | ki | 5.9000 | uM |
CTD chemical–gene interactions
81 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects cotreatment, decreases expression, affects expression | 5 |
| sodium arsenite | affects expression, decreases expression, increases abundance | 3 |
| Benzo(a)pyrene | increases expression | 3 |
| Tretinoin | increases expression | 3 |
| trichostatin A | decreases expression, affects cotreatment | 2 |
| cobaltous chloride | increases expression, decreases expression | 2 |
| perfluorooctane sulfonic acid | decreases expression | 2 |
| belinostat | decreases expression, affects cotreatment | 2 |
| Panobinostat | affects cotreatment, decreases expression | 2 |
| Cisplatin | affects expression, affects cotreatment, increases expression | 2 |
| Phenylmercuric Acetate | affects cotreatment, decreases expression | 2 |
| Tobacco Smoke Pollution | affects expression | 2 |
| Cadmium Chloride | decreases expression, increases abundance | 2 |
| bisphenol F | affects cotreatment, increases expression | 1 |
| bisphenol A | decreases methylation | 1 |
| tris(2-butoxyethyl) phosphate | affects expression | 1 |
| beta-lapachone | decreases expression | 1 |
| afimoxifene | decreases expression | 1 |
| sulforaphane | decreases expression | 1 |
| perfluorooctanoic acid | decreases expression | 1 |
| potassium chromate(VI) | decreases expression | 1 |
| rutecarpine | decreases expression | 1 |
| cupric chloride | decreases expression | 1 |
| nickel sulfate | increases expression | 1 |
| S-(1,2-dichlorovinyl)cysteine | affects response to substance, increases expression | 1 |
| beta-methylcholine | affects expression | 1 |
| tamibarotene | increases expression | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| Am 580 | increases expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
ChEMBL screening assays
40 unique, capped per target: 35 binding, 5 admet
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL1037328 | Binding | Inhibition of AMP deaminase AMP binding site | Fructose-1,6-bisphosphatase Inhibitors. 2. Design, synthesis, and structure-activity relationship of a series of phosphonic acid containing benzimidazoles that function as 5’-adenosinemonophosphate (AMP) mimics. — J Med Chem |
| CHEMBL3110756 | ADMET | Drug metabolism in human MOLT4 cells assessed as ADA-mediated inosine metabolite formation | Structure-activity relationships of synthetic cordycepin analogues as experimental therapeutics for African trypanosomiasis. — J Med Chem |
Cellosaurus cell lines
39 cell lines: 20 transformed cell line, 11 finite cell line, 4 cancer cell line, 4 induced pluripotent stem cell
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_6G82 | ID00017 | Transformed cell line | Female |
| CVCL_7360 | GM02605 | Finite cell line | Male |
| CVCL_7365 | GM02824 | Finite cell line | Female |
| CVCL_8517 | GM01390 | Finite cell line | Male |
| CVCL_B8AV | Abcam HCT 116 ADA KO | Cancer cell line | Male |
| CVCL_B9CX | Abcam A-549 ADA KO | Cancer cell line | Male |
| CVCL_C104 | ADA-iPS2 | Induced pluripotent stem cell | Male |
| CVCL_C105 | ADA-iPS3 | Induced pluripotent stem cell | Male |
| CVCL_CZ12 | GM01997 | Finite cell line | Male |
| CVCL_CZ84 | GM02294 | Transformed cell line | Male |
Clinical trials (associated diseases)
59 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT01420627 | PHASE3 | COMPLETED | EZN-2279 in Patients With ADA-SCID |
| NCT00220766 | PHASE3 | COMPLETED | Rapid Infusion of Immune Globulin Intravenous (Human) In Primary Immunodeficiency Patients |
| NCT06940570 | PHASE3 | SUSPENDED | Methadone as an Alternative Treatment for Children Underdoing HSCT |
| NCT07284641 | PHASE2 | RECRUITING | Hematopoietic Stem Cell Transplantation (HSCT) for Common Variable Immunodeficiency (CVID) and Other Autoimmune Manifestations of Primary Immune Regulatory Disorders (PIRD) |
| NCT00000603 | PHASE2 | COMPLETED | Cord Blood Stem Cell Transplantation Study (COBLT) |
| NCT00794508 | PHASE2 | COMPLETED | MND-ADA Transduction of CD34+ Cells From Children With ADA-SCID |
| NCT01182675 | PHASE2 | TERMINATED | Hematopoietic Stem Cell Transplantation (HSCT) for Children With SCID Utilizing Alemtuzumab, Plerixafor & Filgrastim |
| NCT01529827 | PHASE2 | COMPLETED | Fludarabine Phosphate, Melphalan, and Low-Dose Total-Body Irradiation Followed by Donor Peripheral Blood Stem Cell Transplant in Treating Patients With Hematologic Malignancies |
| NCT01821781 | PHASE2 | ACTIVE_NOT_RECRUITING | Immune Disorder HSCT Protocol |
| NCT02177760 | PHASE2 | WITHDRAWN | Sirolimus Prophylaxis for aGVHD in TME SCID |
| NCT03619551 | PHASE2 | ACTIVE_NOT_RECRUITING | Conditioning SCID Infants Diagnosed Early |
| NCT00008450 | PHASE1 | COMPLETED | Total-Body Irradiation Followed By Cyclosporine and Mycophenolate Mofetil in Treating Patients With Severe Combined Immunodeficiency Undergoing Donor Bone Marrow Transplant |
| NCT02022696 | PHASE1 | COMPLETED | Treatment of SCID Due to ADA Deficiency With Autologous Transplantation of Cord Blood or Hematopoietic CD 34+ Cells After Addition of a Normal Human ADA cDNA by the EFS-ADA Lentiviral Vector |
| NCT00028236 | PHASE1 | COMPLETED | Stem Cell Gene Therapy to Treat X-Linked Severe Combined Immunodeficiency (XSCID) |
| NCT00152100 | PHASE1 | COMPLETED | Transplantation of Hematopoietic Cells in Children With Severe Combined Immunodeficiency Syndrome |
| NCT02860559 | PHASE1 | UNKNOWN | Safety and Early Efficacy Study of TBX-1400 in Patients With Severe Combined Immunodeficiency |
| NCT04140539 | PHASE2/PHASE3 | WITHDRAWN | A Clinical Study to Enable Process Validation of Commercial Grade OTL-101 |
| NCT01279720 | PHASE1/PHASE2 | COMPLETED | Gene Therapy ADA Deficiency |
| NCT01380990 | PHASE1/PHASE2 | COMPLETED | Lentiviral (LV) Gene Therapy for Adenosine Deaminase (ADA) Deficiency |
| NCT01852071 | PHASE1/PHASE2 | COMPLETED | Autologous CD34+ Hematopoietic Stem Cells Transduced ex Vivo With Elongation Factor 1 Alpha Shortened (EFS) Lentiviral Vector Encoding for the Human ADA Gene |
| NCT02999984 | PHASE1/PHASE2 | COMPLETED | Efficacy and Safety of the Cryopreserved Formulation of OTL-101 in Subjects With ADA-SCID |
| NCT03765632 | PHASE1/PHASE2 | COMPLETED | Efficacy and Safety of the Cryopreserved Formulation of OTL-101 in Subjects With ADA-SCID |
| NCT01182857 | Not specified | WITHDRAWN | Quality of Life and Neuropsychiatric Sequelae in Patients Treated With Gene Therapy for ADA-SCID and in Their Parents |
| NCT01186913 | Not specified | ENROLLING_BY_INVITATION | Natural History Study of SCID Disorders |
| NCT01346150 | Not specified | UNKNOWN | Patients Treated for SCID (1968-Present) |
| NCT03232203 | Not specified | COMPLETED | Evaluating the Effectiveness of STRIMVELIS Risk Minimization Measures (RMMs) |
| NCT03655223 | Not specified | ENROLLING_BY_INVITATION | Early Check: Expanded Screening in Newborns |
| NCT04049084 | Not specified | ENROLLING_BY_INVITATION | An Observational LTFU Study for Patients Previously Treated With Autologous ex Vivo Gene Therapy for ADA-SCID |
| NCT04959890 | Not specified | UNKNOWN | Methodology Study of Retroviral Insertion Site Analysis in Strimvelis Gene Therapy |
| NCT05300334 | Not specified | UNKNOWN | Investigation of ADA Enzyme Deficiency |
| NCT05300347 | Not specified | UNKNOWN | Observational Study Evaluating the Prevalence of Enzyme Deficiency in Pulmonology Clinics (ADA) |
| NCT05300373 | Not specified | UNKNOWN | Evaluation of Adenosine Deaminase (ADA) Enzyme Deficiency in Patients With Lymphopenia and/or Elevated Immunoglobulin E |
| NCT01019876 | PHASE2/PHASE3 | COMPLETED | Risk-Adapted Allogeneic Stem Cell Transplantation For Mixed Donor Chimerism In Patients With Non-Malignant Diseases |
| NCT00228852 | PHASE1/PHASE2 | COMPLETED | IMM 0212: Busulfan With Fludarabine and Antithymocyte Globulin as Preparative Therapy for Hematopoietic Stem Cell Transplant for the Treatment of Severe Congenital T-Cell Immunodeficiency |
| NCT00579137 | PHASE1/PHASE2 | TERMINATED | Allogeneic SCT Of Pts With SCID And Other Primary Immunodeficiency Disorders |
| NCT01129544 | PHASE1/PHASE2 | COMPLETED | Gene Transfer for Severe Combined Immunodeficiency, X-linked (SCID-X1) Using a Self-inactivating (SIN) Gammaretroviral Vector |
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Related Atlas pages
- Associated diseases: severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-negative, due to adenosine deaminase deficiency, Omenn syndrome
- Targeted by drugs: Pentostatin
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): Omenn syndrome, severe combined immunodeficiency, severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-negative, due to adenosine deaminase deficiency, severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive