ADA2
gene geneOn this page
Also known as ADGF
Summary
ADA2 (adenosine deaminase 2, HGNC:1839) is a protein-coding gene on chromosome 22q11.1, encoding Adenosine deaminase 2 (Q9NZK5). Adenosine deaminase that may contribute to the degradation of extracellular adenosine, a signaling molecule that controls a variety of cellular responses.
This gene encodes a member of a subfamily of the adenosine deaminase protein family. The encoded protein is one of two adenosine deaminases found in humans, which regulate levels of the signaling molecule, adenosine. The encoded protein is secreted from monocytes undergoing differentiation and may regulate cell proliferation and differentiation. This gene may be responsible for some of the phenotypic features associated with cat eye syndrome. Alternative splicing results in multiple transcript variants.
Source: NCBI Gene 51816 — RefSeq curated summary.
At a glance
- Gene–disease (curated): deficiency of adenosine deaminase 2 (Strong, GenCC) — +3 more curated relationships
- GWAS associations: 1
- Clinical variants (ClinVar): 693 total — 91 pathogenic, 34 likely-pathogenic (top 5% of genes corpus-wide)
- GTEx eGene: eQTL in 50 tissues, sQTL in 32 (q < 0.05)
- Constraint (gnomAD): pLI 0.00 (LoF-tolerant), LOEUF 0.88 (unconstrained)
- MANE Select transcript:
NM_001282225
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:1839 |
| Approved symbol | ADA2 |
| Name | adenosine deaminase 2 |
| Location | 22q11.1 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | ADGF |
| Ensembl gene | ENSG00000093072 |
| Ensembl biotype | protein_coding |
| OMIM | 607575 |
| Entrez | 51816 |
Gene structure
Transcript identifiers
Ensembl transcripts: 33 — 22 protein_coding, 6 retained_intron, 3 nonsense_mediated_decay, 2 protein_coding_CDS_not_defined
MANE Select: ENST00000399837
Transcript support level (Ensembl TSL; 1 = fully mRNA-supported): TSL 1: 2, TSL 2: 3, TSL 3: 1, TSL 4: 1, TSL 5: 2
ENST00000399837, ENST00000262607, ENST00000330232, ENST00000399839, ENST00000449907, ENST00000469063, ENST00000480276, ENST00000543038, ENST00000610390, ENST00000648061, ENST00000648343, ENST00000648668, ENST00000649310, ENST00000649540, ENST00000649746, ENST00000649915, ENST00000650635, ENST00000696189, ENST00000696196, ENST00000696197, ENST00000696198, ENST00000696218, ENST00000696220, ENST00000696221, ENST00000696222, ENST00000696223, ENST00000696224, ENST00000696225, ENST00000696226, ENST00000696227, ENST00000885358, ENST00000885359, ENST00001105598
RefSeq mRNA: 6 — MANE Select: NM_001282225
NM_001282225, NM_001282226, NM_001282227, NM_001282228, NM_001282229, NM_177405
CCDS: CCDS13742, CCDS13743, CCDS63395, CCDS74809
Canonical transcript exons
ENST00000399837 — 10 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000650248 | 17181820 | 17182022 |
| ENSE00000650252 | 17188339 | 17188447 |
| ENSE00000650260 | 17189942 | 17190032 |
| ENSE00000650274 | 17203563 | 17203773 |
| ENSE00000650281 | 17207071 | 17207290 |
| ENSE00001540382 | 17178790 | 17181576 |
| ENSE00001540384 | 17219356 | 17219435 |
| ENSE00003508775 | 17191683 | 17191810 |
| ENSE00003966413 | 17209356 | 17209723 |
| ENSE00003966554 | 17182604 | 17182761 |
Expression profiles
Bgee: expression breadth ubiquitous, 254 present calls, max score 98.88.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 15.5150 / max 452.3044, expressed in 1105 samples.
Highest expression (Bgee): monocyte, mononuclear cell, leukocyte, granulocyte, bone marrow cell.
Genetic regulation across tissues (GTEx eQTL / sQTL)
ADA2 is an eGene in GTEx v10 — its expression is genetically regulated (eQTL) in 50 tissues and its splicing (sQTL) in 32 (q < 0.05). Strongest associations first; slope = normalized effect of the lead variant’s alternative allele.
showing 20 of 82 significant tissue × QTL associations:
| Tissue | QTL | q-value | Slope | Lead variant |
|---|---|---|---|---|
| Cells Cultured fibroblasts | eqtl | 2.1e-198 | +1.10 | 22:17199629:A:C |
| Nerve Tibial | eqtl | 5.1e-198 | +0.98 | 22:17199629:A:C |
| Esophagus Muscularis | eqtl | 6.2e-138 | +1.08 | 22:17199629:A:C |
| Muscle Skeletal | eqtl | 3.3e-136 | +0.81 | 22:17199629:A:C |
| Skin Sun Exposed Lower leg | eqtl | 2.7e-125 | +0.79 | 22:17199629:A:C |
| Thyroid | eqtl | 1.2e-114 | +0.82 | 22:17199629:A:C |
| Heart Atrial Appendage | eqtl | 8.2e-111 | +0.99 | 22:17199629:A:C |
| Esophagus Mucosa | eqtl | 1.3e-106 | +0.95 | 22:17199629:A:C |
| Heart Left Ventricle | eqtl | 8.5e-102 | +1.04 | 22:17199629:A:C |
| Skin Not Sun Exposed Suprapubic | eqtl | 1.9e-101 | +0.77 | 22:17199629:A:C |
| Artery Tibial | eqtl | 2.2e-100 | +0.57 | 22:17199629:A:C |
| Adipose Subcutaneous | eqtl | 4.2e-98 | +0.55 | 22:17199629:A:C |
| Pancreas | eqtl | 4.5e-96 | +1.15 | 22:17199629:A:C |
| Breast Mammary Tissue | eqtl | 4.3e-93 | +0.88 | 22:17199629:A:C |
| Pituitary | eqtl | 4.5e-93 | +1.18 | 22:17199629:A:C |
| Esophagus Gastroesophageal Junction | eqtl | 9.0e-89 | +1.15 | 22:17199629:A:C |
| Colon Sigmoid | eqtl | 1.1e-88 | +0.92 | 22:17199629:A:C |
| Adipose Visceral Omentum | eqtl | 1.3e-76 | +0.63 | 22:17199629:A:C |
| Artery Aorta | eqtl | 2.6e-71 | +0.86 | 22:17199629:A:C |
| Colon Transverse | eqtl | 6.1e-71 | +0.62 | 22:17199629:A:C |
FANTOM5 promoters
8 alternative TSS:
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 193076 | 12.0018 | 469 |
| 193075 | 3.1815 | 776 |
| 193077 | 0.1223 | 75 |
| 193083 | 0.0907 | 36 |
| 193073 | 0.0731 | 16 |
| 193074 | 0.0211 | 4 |
| 193082 | 0.0183 | 6 |
| 193078 | 0.0061 | 1 |
Top tissues by expression
showing 100 of 285 tissues by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| monocyte | CL:0000576 | 98.88 | gold quality |
| mononuclear cell | CL:0000842 | 98.87 | gold quality |
| leukocyte | CL:0000738 | 98.86 | gold quality |
| granulocyte | CL:0000094 | 98.21 | gold quality |
| bone marrow cell | CL:0002092 | 96.94 | gold quality |
| right uterine tube | UBERON:0001302 | 96.16 | gold quality |
| spleen | UBERON:0002106 | 96.11 | gold quality |
| blood | UBERON:0000178 | 95.42 | gold quality |
| lymph node | UBERON:0000029 | 95.10 | gold quality |
| thymus | UBERON:0002370 | 94.40 | gold quality |
| sperm | CL:0000019 | 93.96 | silver quality |
| gall bladder | UBERON:0002110 | 93.86 | gold quality |
| vermiform appendix | UBERON:0001154 | 93.65 | gold quality |
| colonic epithelium | UBERON:0000397 | 92.95 | gold quality |
| rectum | UBERON:0001052 | 92.86 | gold quality |
| heart right ventricle | UBERON:0002080 | 92.74 | gold quality |
| palpebral conjunctiva | UBERON:0001812 | 92.16 | gold quality |
| male germ cell | CL:0000015 | 92.06 | silver quality |
| caecum | UBERON:0001153 | 91.77 | gold quality |
| right lung | UBERON:0002167 | 91.65 | gold quality |
| ileal mucosa | UBERON:0000331 | 91.59 | gold quality |
| cardiac muscle of right atrium | UBERON:0003379 | 91.52 | gold quality |
| decidua | UBERON:0002450 | 91.37 | gold quality |
| epithelium of bronchus | UBERON:0002031 | 91.09 | gold quality |
| bronchus | UBERON:0002185 | 90.90 | gold quality |
| apex of heart | UBERON:0002098 | 90.89 | gold quality |
| trabecular bone tissue | UBERON:0002483 | 90.71 | gold quality |
| bone marrow | UBERON:0002371 | 90.65 | gold quality |
| bronchial epithelial cell | CL:0002328 | 90.46 | gold quality |
| C1 segment of cervical spinal cord | UBERON:0006469 | 90.43 | gold quality |
| heart left ventricle | UBERON:0002084 | 90.33 | gold quality |
| olfactory segment of nasal mucosa | UBERON:0005386 | 90.29 | gold quality |
| cardiac ventricle | UBERON:0002082 | 90.28 | gold quality |
| right testis | UBERON:0004534 | 90.12 | gold quality |
| spinal cord | UBERON:0002240 | 89.96 | gold quality |
| right atrium auricular region | UBERON:0006631 | 89.34 | gold quality |
| left testis | UBERON:0004533 | 89.33 | gold quality |
| cardiac atrium | UBERON:0002081 | 89.31 | gold quality |
| tonsil | UBERON:0002372 | 88.95 | gold quality |
| lung | UBERON:0002048 | 88.85 | gold quality |
| islet of Langerhans | UBERON:0000006 | 88.84 | gold quality |
| upper lobe of left lung | UBERON:0008952 | 88.64 | gold quality |
| lower lobe of lung | UBERON:0008949 | 88.56 | silver quality |
| eye | UBERON:0000970 | 88.54 | gold quality |
| heart | UBERON:0000948 | 88.52 | gold quality |
| upper lobe of lung | UBERON:0008948 | 88.45 | gold quality |
| visceral pleura | UBERON:0002401 | 88.40 | gold quality |
| testis | UBERON:0000473 | 88.02 | gold quality |
| pituitary gland | UBERON:0000007 | 87.78 | gold quality |
| fallopian tube | UBERON:0003889 | 87.76 | gold quality |
| layer of synovial tissue | UBERON:0007616 | 87.71 | gold quality |
| smooth muscle tissue | UBERON:0001135 | 87.64 | gold quality |
| small intestine Peyer’s patch | UBERON:0003454 | 87.46 | gold quality |
| small intestine | UBERON:0002108 | 87.27 | gold quality |
| endometrium | UBERON:0001295 | 87.15 | gold quality |
| myocardium | UBERON:0002349 | 87.06 | gold quality |
| mucosa of sigmoid colon | UBERON:0004993 | 86.55 | gold quality |
| descending thoracic aorta | UBERON:0002345 | 86.46 | gold quality |
| right coronary artery | UBERON:0001625 | 86.41 | gold quality |
| cervix squamous epithelium | UBERON:0006922 | 86.25 | gold quality |
| pleura | UBERON:0000977 | 85.99 | gold quality |
| trigeminal ganglion | UBERON:0001675 | 85.97 | gold quality |
| left ventricle myocardium | UBERON:0006566 | 85.93 | gold quality |
| duodenum | UBERON:0002114 | 85.91 | gold quality |
| jejunal mucosa | UBERON:0000399 | 85.86 | gold quality |
| oviduct epithelium | UBERON:0004804 | 85.85 | gold quality |
| trachea | UBERON:0003126 | 85.61 | gold quality |
| adenohypophysis | UBERON:0002196 | 85.32 | gold quality |
| superficial temporal artery | UBERON:0001614 | 84.85 | gold quality |
| inferior vagus X ganglion | UBERON:0005363 | 84.67 | silver quality |
| parietal pleura | UBERON:0002400 | 84.65 | gold quality |
| thoracic aorta | UBERON:0001515 | 84.22 | gold quality |
| renal glomerulus | UBERON:0000074 | 84.08 | gold quality |
| ascending aorta | UBERON:0001496 | 84.04 | gold quality |
| esophagus squamous epithelium | UBERON:0006920 | 84.03 | gold quality |
| substantia nigra | UBERON:0002038 | 83.88 | gold quality |
| right hemisphere of cerebellum | UBERON:0014890 | 83.86 | gold quality |
| nasal cavity mucosa | UBERON:0001826 | 83.83 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 83.74 | gold quality |
| hypothalamus | UBERON:0001898 | 83.58 | gold quality |
| cerebellar cortex | UBERON:0002129 | 83.56 | gold quality |
| epithelium of esophagus | UBERON:0001976 | 83.54 | gold quality |
| urinary bladder | UBERON:0001255 | 83.45 | gold quality |
| midbrain | UBERON:0001891 | 83.37 | gold quality |
| uterus | UBERON:0000995 | 83.26 | gold quality |
| subthalamic nucleus | UBERON:0001906 | 83.18 | silver quality |
| skin of hip | UBERON:0001554 | 83.16 | gold quality |
| pylorus | UBERON:0001166 | 83.03 | gold quality |
| prostate gland | UBERON:0002367 | 82.99 | gold quality |
| intestine | UBERON:0000160 | 82.98 | gold quality |
| ganglionic eminence | UBERON:0004023 | 82.88 | gold quality |
| epithelium of nasopharynx | UBERON:0001951 | 82.83 | gold quality |
| nasopharynx | UBERON:0001728 | 82.82 | gold quality |
| cerebellum | UBERON:0002037 | 82.82 | gold quality |
| pancreas | UBERON:0001264 | 82.81 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 82.78 | gold quality |
| metanephric glomerulus | UBERON:0004736 | 82.68 | gold quality |
| left uterine tube | UBERON:0001303 | 82.54 | gold quality |
| right lobe of thyroid gland | UBERON:0001119 | 82.47 | gold quality |
| right adrenal gland | UBERON:0001233 | 82.41 | gold quality |
Single-cell (SCXA)
Detected in 7 experiment(s), a significant marker in 6.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-MTAB-6678 | yes | 23.88 |
| E-MTAB-8498 | yes | 11.65 |
| E-GEOD-93593 | yes | 7.77 |
| E-MTAB-9801 | yes | 6.56 |
| E-MTAB-9543 | yes | 4.58 |
| E-MTAB-8060 | no | 52.43 |
| E-ANND-3 | no | 0.00 |
HPA expression
RNA tissue specificity: Tissue enhanced
showing 60 of 150 HPA tissues / cells by nTPM:
| Tissue / cell | Axis | nTPM |
|---|---|---|
| Spleen | tissue | 106.4 |
| Tonsil | tissue | 60.5 |
| Thymus | tissue | 52.8 |
| Lung | tissue | 52.7 |
| Lymph node | tissue | 47.8 |
| Fallopian tube | tissue | 42.4 |
| Appendix | tissue | 37.8 |
| Choroid plexus | tissue | 37.3 |
| Heart muscle | tissue | 36.4 |
| Midbrain | tissue | 35.4 |
| Spinal cord | tissue | 35.3 |
| Pons | tissue | 34.8 |
| Urinary bladder | tissue | 33.9 |
| Thalamus | tissue | 33.7 |
| Corpus callosum | tissue | 33.4 |
| Medulla oblongata | tissue | 33.2 |
| Rectum | tissue | 32.9 |
| Superior colliculi | tissue | 32.4 |
| Cerebral cortex | tissue | 32.1 |
| Somatosensory cortex | tissue | 32.1 |
| Occipital cortex | tissue | 31.7 |
| Hypothalamus | tissue | 31.3 |
| Periaqueductal gray | tissue | 31.3 |
| Gallbladder | tissue | 30.8 |
| Substantia nigra | tissue | 30.8 |
| Substantia nigra | tissue | 30.2 |
| Spinal cord | tissue | 30.2 |
| Septum | tissue | 30.2 |
| Hippocampal formation | tissue | 29.9 |
| Prefrontal cortex | tissue | 29.8 |
| Motor cortex | tissue | 29.7 |
| Putamen | tissue | 29.4 |
| Retrosplenial and cingulate cortex | tissue | 29.2 |
| Retrosplenial cortex | tissue | 29.0 |
| Entorhinal cortex | tissue | 28.7 |
| Hypothalamus | tissue | 28.3 |
| Periaqueductal gray | tissue | 27.7 |
| Medulla oblongata | tissue | 27.6 |
| Cerebellum | tissue | 27.5 |
| Ventral forebrain | tissue | 27.4 |
| Temporal cortex | tissue | 27.4 |
| Corpus callosum | tissue | 27.2 |
| Basal ganglia | tissue | 26.9 |
| Insular cortex | tissue | 25.6 |
| Small intestine | tissue | 25.2 |
| Septum | tissue | 24.8 |
| Olfactory bulb | tissue | 24.6 |
| Colon | tissue | 24.0 |
| Amygdala | tissue | 23.9 |
| Pons | tissue | 23.3 |
| Midbrain | tissue | 23.1 |
| Bone marrow | tissue | 23.1 |
| Putamen | tissue | 22.8 |
| Smooth muscle | tissue | 21.6 |
| Ventral pallidum | tissue | 20.7 |
| Cervix | tissue | 20.4 |
| Thalamus | tissue | 20.3 |
| Frontal cortex | tissue | 20.1 |
| Amygdala | tissue | 20.0 |
| Liver | tissue | 20.0 |
Brain sub-regions (HPA Brain Atlas): detected in 378; highest nTPM — Lateral funiculus (white matter) (40.9), Ventral spinal cord (35.3), Anterior funiculus (white matter) (34.4), White matter (33.4), Dorsal funiculus (white matter) (32.9).
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
Targeting ADA2 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific).
showing 30 of 92 miRNAs:
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4673 | 100.00 | 66.64 | 1490 |
| HSA-MIR-4481 | 100.00 | 66.42 | 1669 |
| HSA-MIR-6851-5P | 100.00 | 65.63 | 1294 |
| HSA-MIR-3689D | 100.00 | 66.14 | 1181 |
| HSA-MIR-4692 | 100.00 | 67.32 | 2066 |
| HSA-MIR-4645-5P | 99.98 | 65.81 | 1284 |
| HSA-MIR-4745-5P | 99.98 | 65.95 | 1028 |
| HSA-MIR-5688 | 99.96 | 73.23 | 4504 |
| HSA-MIR-495-3P | 99.96 | 72.81 | 4197 |
| HSA-MIR-4487 | 99.96 | 64.58 | 1252 |
| HSA-MIR-539-5P | 99.93 | 70.30 | 2855 |
| HSA-MIR-7-1-3P | 99.91 | 71.53 | 4384 |
| HSA-MIR-7-2-3P | 99.91 | 71.40 | 4394 |
| HSA-MIR-548E-5P | 99.89 | 72.73 | 4486 |
| HSA-MIR-10395-5P | 99.86 | 67.35 | 676 |
| HSA-MIR-3934-3P | 99.76 | 65.51 | 1351 |
| HSA-MIR-4306 | 99.72 | 70.50 | 3630 |
| HSA-MIR-6752-3P | 99.72 | 66.71 | 1587 |
| HSA-MIR-4524A-3P | 99.72 | 66.85 | 2406 |
| HSA-MIR-5004-5P | 99.68 | 66.63 | 1294 |
| HSA-MIR-4756-3P | 99.62 | 66.30 | 1319 |
| HSA-MIR-4516 | 99.61 | 67.78 | 3390 |
| HSA-MIR-6832-5P | 99.58 | 64.82 | 1132 |
| HSA-MIR-4524A-5P | 99.57 | 71.73 | 1193 |
| HSA-MIR-4524B-5P | 99.57 | 71.68 | 1195 |
| HSA-MIR-7844-5P | 99.55 | 68.56 | 1428 |
| HSA-MIR-5584-5P | 99.49 | 68.22 | 2814 |
| HSA-MIR-4696 | 99.48 | 67.48 | 1040 |
| HSA-MIR-1224-5P | 99.48 | 65.59 | 803 |
| HSA-MIR-3123 | 99.47 | 67.15 | 2693 |
Functional genomics
gnomAD constraint: pLI 5.39e-06, LOEUF 0.879, missense Z 0.325 — population loss-of-function intolerance (pLI ≥ 0.9 = LoF-intolerant; lower LOEUF = more constrained). gnomAD
Regional missense constraint (gnomAD RMC): no regional variation along ENST00000399837 — one region, missense o/e 0.99.
Literature-anchored findings (GeneRIF, showing 40)
- findings show ADA2 is encoded by the CECR1 gene & belongs to novel family of ADA-related growth factors;ADA2 may be active in sites of inflammation during hypoxia & in areas of tumour growth where adenosine is elevated & extracellular pH is acidic (PMID:15926889)
- The crystal structures of ADA2 and ADA2 bound to a transition state analogue presented here reveal the structural basis of the catalytic/signaling activity of adenosine deaminase growth factor/ADA2 proteins. (PMID:20147294)
- Plasma AD2 may have a role in determining tumour response to treatment. (PMID:22558798)
- Increased ADA2 expression and activity are identified in human and porcine retinas with diabetes. (PMID:23685153)
- Loss-of-function mutations in CECR1 were associated with a spectrum of vascular and inflammatory phenotypes, ranging from early-onset recurrent stroke to systemic vasculopathy or vasculitis. (PMID:24552284)
- Recessive loss-of-function mutations of ADA2, a growth factor that is the major extracellular adenosine deaminase, can cause polyarteritis nodosa vasculopathy with highly varied clinical expression. (PMID:24552285)
- We report on a 5-year-old girl with a severe vasculopathy who carried two novel mutations in CECR1. (PMID:24737293)
- ADA2 (CECR1) may act as a regulator of neutrophil activation, and that a reduction of ADA2 activity results in significant endothelial damage via a neutrophil-driven process. (PMID:25278816)
- Ectopic expression of miR-146b-3p suppressed ADA2 expression, activity, and TNF-alpha release in the AGA-treated human macrophages (PMID:25815338)
- In patients with unexplained young-onset lacunar stroke accompanied by systemic inflammation and a positive family history suspicious of recessively inherited disease, ADA2 deficiency needs to be considered in the differential diagnosis. (PMID:25888558)
- IL-17 receptor A and adenosine deaminase 2 deficiency due to deletion mutations was found in siblings with chronic mucocutaneous candidiasis and chronic systemic inflammation. (PMID:26607704)
- This case series revealed large phenotypic variability in patients with ADA2 deficiency though they were homozygous for the same R169Q mutation in CECR1. (PMID:26867732)
- Deficiency of ADA2 causes IgA-IgG antibody deficiencies in a family. (PMID:26922074)
- The clinical manifestations of adenosine deaminase 2 deficiency ranged in severity from limited cutaneous involvement to severe multisystemic vasculitis; one-third of our cases (5 of 15) were currently asymptomatic, and required close monitoring. We recommend CECR1 screening for unaffected siblings of index cases, cases of familial vasculitis, and cases of PAN that is resistant to standard treatment (PMID:27059682)
- Adenosine deaminase type 2 deficiency with a homozygous premature stop codon masquerading as GATA2 deficiency: successful haploidentical sibling hematopoietic stem cell transplantation. (PMID:27130863)
- We discuss three newly described monogenic autoinflammatory diseases [deficiency of adenosine deaminase 2 (DADA2), a subtype of macrophage activation syndrome (MAS), and stimulator of interferon genes (STING)-associated vasculopathy with onset in infancy (SAVI)], discuss the possibilities of somatic mosaicism and digenic inheritance, and give an update on new concepts in pathways involved in familial Mediterranean fever (PMID:27362340)
- Deficiency of Adenosine Deaminase 2 (DADA2) is a new autoinflammatory disease secondary to autosomal recessive mutations of CECR1 (Cat Eye Syndrome Chromosome Region 1) gene, mapped to chromosome 22q11.1. (PMID:27609179)
- High CECR1 activity is associated with brain tumor. (PMID:28453746)
- Findings indicate that ADA2 deficiency presents not only with vasculopathy but also with an immunodeficiency of the B cell compartment. Therefore, patients with antibody deficiency should be screened for ADA2 deficiency. (PMID:28493328)
- CECR1 function in (M2-like) macrophages mediates cross talk between macrophages and pericytes in GBM via paracrine PDGFB-PDGFRbeta signaling, promoting pericyte recruitment and migration, and tumor angiogenesis. (PMID:28534507)
- Data show that 2 patients required a second transplant for engraftment failure were discovered to carry the deleterious ADA2 adenosine deaminase (CECR1) mutations and be ADA2 deficient. (PMID:28974505)
- We imposed no clinical selection or criteria before testing but collected uniform clinical data for each patient. Therefore, this series exactly reflects the context of requests for sequencing the ADA2 gene we receive in our laboratory (PMID:29681619)
- Our work identifies not only a new set of causal mutations but more generally demonstrates the importance of N-glycosylation for normal ADA2 function. To our knowledge, this is the first report of an autoinflammatory disease caused by a defect in glycosylation. (PMID:29936104)
- Case Report: describe phenotype of patient with ADA2 deficiency. (PMID:30148442)
- this study reports two ADA2 deficiency patients in whom recalcitrant warts and mollusca were a predominant phenotype (PMID:30386947)
- ADA2 activity in plasma reliably distinguishes adult Sneddon’s syndrome of unknown cause patients from healthy controls. (PMID:30645994)
- In children with deficiency of ADA2 (DADA2) (5 with polyarteritis nodosa, 3 with unclassifiable vasculitis, and 1 with ANCA-associated vasculitis), 1 patient had no rare variants in the coding region of ADA2 and 8 had biallelic, rare variants (minor allele frequency <0.01) with a known association with DADA2 (p.Gly47Arg and p.Gly47Ala) or a novel association (p.Arg9Trp, p.Leu351Gln, and p.Ala357Thr). (PMID:31008556)
- These results suggest that neutrophils may play a pathogenic role in DADA2. Modulation of adenosine-mediated NET formation may contribute a novel and directed therapeutic approach in the treatment of DADA2 and potentially other inflammatory diseases. (PMID:31015188)
- Description of three families with the same homozygous splice site mutation in ADA2 and observed a novel combination of manifestations resembling Behcet’s disease. (PMID:31856934)
- Role of adenosine deaminase 2 gene variants in pediatric deficiency of adenosine deaminase 2: A structural biological approach. (PMID:31974608)
- Two cases of ADA2 deficiency presenting as childhood polyarteritis nodosa: novel ADA2 variant, atypical CNS manifestations, and literature review. (PMID:32535845)
- Deficiency of Adenosine Deaminase 2 (DADA2): Hidden Variants, Reduced Penetrance, and Unusual Inheritance. (PMID:32638197)
- Dysregulation in B-cell responses and T follicular helper cell function in ADA2 deficiency patients. (PMID:32707604)
- Sequence-Based Screening of Patients With Idiopathic Polyarteritis Nodosa, Granulomatosis With Polyangiitis, and Microscopic Polyangiitis for Deleterious Genetic Variants in ADA2. (PMID:33021335)
- Novel ADA2 Compound Heterozygous Mutations Resulting in Deficiency of Adenosine Deaminase 2 in a Pair of Siblings. (PMID:33517505)
- Detailed analysis of Japanese patients with adenosine deaminase 2 deficiency reveals characteristic elevation of type II interferon signature and STAT1 hyperactivation. (PMID:33529688)
- Adult-onset deficiency of adenosine deaminase 2-a case report and literature review. (PMID:33638065)
- Expanding spectrum of DADA2: a review of phenotypes, genetics, pathogenesis and treatment. (PMID:33791889)
- Targeting Adenosine with Adenosine Deaminase 2 to Inhibit Growth of Solid Tumors. (PMID:33863778)
- Macrophage-Derived Adenosine Deaminase 2 Correlates with M2 Macrophage Phenotype in Triple Negative Breast Cancer. (PMID:33916440)
Cross-species orthologs
8 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | ada2b | ENSDARG00000015623 |
| danio_rerio | ada2a | ENSDARG00000051746 |
| drosophila_melanogaster | Adgf-E | FBGN0033952 |
| drosophila_melanogaster | Adgf-B | FBGN0036751 |
| drosophila_melanogaster | Adgf-A | FBGN0036752 |
| drosophila_melanogaster | Adgf-D | FBGN0038172 |
| drosophila_melanogaster | Adgf-C | FBGN0038173 |
| drosophila_melanogaster | Adgf-A2 | FBGN0043025 |
Paralogs (2): MAPDA (ENSG00000168803), ADA (ENSG00000196839)
Additional cross-species homologs
Sequence homologs in species beyond Ensembl Compara’s model organisms, by Diamond local protein alignment (% sequence identity; best hit per species). Lower-identity rows are more distant homologs. The matched accessions’ gene symbols aren’t in biobtree yet, so each row shows the UniProt accession.
| Organism | UniProt | Identity | Method |
|---|---|---|---|
| Cupriavidus taiwanensis LMG 19424 | B3R3T1 | 97.4% | Diamond |
| Pseudomonas [fluorescens] SBW25 | C3K8W2 | 97.2% | Diamond |
| Pongo abelii | Q5RC46 | 96.9% | Diamond |
| Cupriavidus pinatubonensis JMP134 | Q46YJ3 | 94.3% | Diamond |
| Ralstonia pickettii 12J | B2U7U6 | 94.2% | Diamond |
| Ralstonia pseudosolanacearum GMI1000 | Q8XXL5 | 94.2% | Diamond |
| Cupriavidus metallidurans CH34 | Q1LQ00 | 91.4% | Diamond |
| Trichlorobacter lovleyi SZ | B3E600 | 82.2% | Diamond |
| Sus scrofa | P58780 | 71.2% | Diamond |
| Chelativorans sp. BNC1 | Q11C48 | 71.2% | Diamond |
| Phlebotomus duboscqi | Q06K61 | 71.0% | Diamond |
| Lutzomyia longipalpis | Q9NC65 | 71.0% | Diamond |
| Acinetobacter baylyi ADP1 | Q6FCU0 | 67.9% | Diamond |
| Wolinella succinogenes DSM 1740 | Q7M9R5 | 63.1% | Diamond |
| Crocosphaera subtropica ATCC 51142 | B1WR40 | 61.2% | Diamond |
| Streptomyces coelicolor A3(2) | Q9RDE5 | 61.2% | Diamond |
| Vibrio parahaemolyticus RIMD 2210633 | Q87GM3 | 61.0% | Diamond |
| Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 | Q5NNW5 | 60.9% | Diamond |
| Pelodictyon luteolum DSM 273 | Q3B2Q0 | 60.7% | Diamond |
| Xenopus laevis | Q2VQV9 | 58.6% | Diamond |
| Campylobacter lari RM2100 | B9KE87 | 58.2% | Diamond |
| Aedes albopictus | Q5MIX2 | 51.4% | Diamond |
| Opitutus terrae PB90-1 | B1ZYW1 | 42.6% | Diamond |
| Aplysia californica | P15287 | 41.5% | Diamond |
| Acidothermus cellulolyticus 11B | A0LRH8 | 39.4% | Diamond |
| Dictyostelium discoideum | Q553U5 | 39.2% | Diamond |
Genomic neighbors (locus context)
Genes flanking this one on the chromosome (NCBI/Entrez gene neighborhood). Positional context only — some neighbors share regulatory elements (bidirectional promoters, antisense/overlapping transcripts), but chromosomal adjacency is not itself a functional relationship (see Interactions for that).
| Symbol | Type | Entrez |
|---|---|---|
| LINC01664 | ncRNA | 100996342 |
| TMEM121B | protein-coding | 27439 |
| HDHD5 | protein-coding | 27440 |
| HDHD5-AS1 | ncRNA | 100130717 |
| IL17RA | protein-coding | 23765 |
| CECR3 | ncRNA | 27442 |
| CECR2 | protein-coding | 27443 |
Protein
Protein identifiers
Adenosine deaminase 2 — Q9NZK5 (reviewed: Q9NZK5)
Alternative names: Cat eye syndrome critical region protein 1
All UniProt accessions (13): A0A087X0I3, A0A3B3IRN1, A0A3B3IRR5, A0A3B3IT96, A0A8Q3SIG4, A0A8Q3SIK1, A0A8Q3WL33, A0A8Q3WL39, A0A8Q3WM36, Q9NZK5, A0A8Q3WMB0, B4E3Q4, F5H7J3
UniProt curated annotations — full annotation on UniProt →
Function. Adenosine deaminase that may contribute to the degradation of extracellular adenosine, a signaling molecule that controls a variety of cellular responses. Requires elevated adenosine levels for optimal enzyme activity. Binds to cell surfaces via proteoglycans and may play a role in the regulation of cell proliferation and differentiation, independently of its enzyme activity.
Subunit / interactions. Homodimer. Interacts with adenosine receptors. Binds heparin.
Subcellular location. Secreted.
Tissue specificity. Detected in blood plasma (at protein level). Widely expressed, with most abundant expression in human adult heart, lung, lymphoblasts, and placenta as well as fetal lung, liver, and kidney. In embryo, expressed in the outflow tract and atrium of the developing heart, the VII/VIII cranial nerve ganglion, and the notochord.
Disease relevance. Vasculitis, autoinflammation, immunodeficiency, and hematologic defects syndrome (VAIHS) [MIM:615688] An autosomal recessive, systemic necrotizing vasculitis that affects medium and small arteries. The ensuing tissue ischemia can affect any organ, including the skin, musculoskeletal system, kidneys, gastrointestinal tract, and the cardiovascular and nervous systems. Organ involvement and disease severity are highly variable. Clinical features include recurrent ischemic stroke affecting the small vessels of the brain and resulting in neurologic dysfunction, recurrent fever, myalgias, livedoid rash, gastrointestinal pain and hepatosplenomegaly. The disease is caused by variants affecting the gene represented in this entry. Sneddon syndrome (SNDNS) [MIM:182410] An autosomal recessive, systemic non-inflammatory thrombotic vasculopathy characterized by the association of livedo racemosa, and in some cases livedo reticularis, with cerebrovascular disease. Livedo racemosa is a persistent net-like violaceous-cyanotic, mottled discoloration of the skin affecting the legs, the arms, the buttocks and the trunk; livedo reticularis is limited to the extremities and is visible only in the cold. Cerebrovascular features include recurrent transient ischemic attacks, infarcts, and rarely spinal strokes or intracranial or subarachnoid hemorrhages. Headache and vertigo may precede the onset of livedo racemosa and cerebrovascular manifestations by several years. Rare neurologic symptoms include seizures, chorea, or myelopathies. The disease is caused by variants affecting the gene represented in this entry.
Cofactor. Binds 1 zinc ion per subunit.
Domain organisation. The PRB domain is involved in receptor binding, and may be responsible for the cytokine-like growth factor activity due to its sharing of several structural properties with chemokines. High-affinity binding to heparin/glycosaminoclycan (GAG) is mediated by a large, highly positively charged surface at the interface of dimer’s subunits involving approximately residues 30-45, 389-396, and 422-428.
Miscellaneous. Candidate gene for the Cat Eye Syndrome (CES), a developmental disorder associated with the duplication of a 2 Mb region of 22q11.2. Duplication usually takes in the form of a surpernumerary bisatellited isodicentric chromosome, resulting in four copies of the region (represents an inv dup(22)(q11)). CES is characterized clinically by the combination of coloboma of the iris and anal atresia with fistula, downslanting palpebral fissures, preauricular tags and/or pits, frequent occurrence of heart and renal malformations, and normal or near-normal mental development.
Similarity. Belongs to the metallo-dependent hydrolases superfamily. Adenosine and AMP deaminases family. ADGF subfamily.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q9NZK5-1 | 1 | yes |
| Q9NZK5-2 | 2 |
RefSeq proteins (6): NP_001269154, NP_001269155, NP_001269156, NP_001269157, NP_001269158, NP_803124 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001365 | A_deaminase_dom | Domain |
| IPR006330 | Ado/ade_deaminase | Family |
| IPR006331 | ADGF | Family |
| IPR013659 | A_deaminase_N | Domain |
| IPR032466 | Metal_Hydrolase | Homologous_superfamily |
Pfam: PF00962, PF08451
Enzyme classification (BRENDA)
- EC 3.5.4.4 — adenosine deaminase (BRENDA: 55 organisms, 135 substrates, 272 inhibitors, 117 Km, 44 kcat entries)
Substrate kinetics (BRENDA)
11 substrates with measured Km, best-characterized 11. Km ranges are aggregated across organisms/conditions.
| Substrate | Km (mM) | Measurements |
|---|---|---|
| ADENOSINE | — | 69 |
| 2’-DEOXYADENOSINE | 0.004–0.56 | 18 |
| 5’-METHYLTHIOADENOSINE | 0.0044–0.376 | 14 |
| 2’,3’-ISOPROPYLIDENE ADENOSINE | 0.29 | 1 |
| 6-CHLOROPURINE RIBOSIDE | 0.31 | 1 |
| 6-CHLOROPURINRIBOSIDE | 0.277 | 1 |
| 6-METHOXYPURINRIBOSIDE | 0.081 | 1 |
| ADENINE | 0.032 | 1 |
| ADENOSINE-3’-MONOPHOSPHATE | 2 | 1 |
| AMP | 0.17 | 1 |
| CAMP | 0.5 | 1 |
Catalyzed reactions (Rhea)
- adenosine + H2O + H(+) = inosine + NH4(+) (RHEA:24408)
UniProt features (84 total): helix 31, strand 12, sequence variant 11, binding site 9, glycosylation site 4, turn 4, region of interest 2, splice variant 2, mutagenesis site 2, sequence conflict 2, active site 2, signal peptide 1, chain 1, disulfide bond 1
Structure
Experimental structures (PDB)
2 structures by resolution:
| PDB | Title | Method | Resolution (Å) |
|---|---|---|---|
| 3LGD | Crystal structure of human adenosine deaminase growth factor, adenosine deaminase type 2 … | X-RAY DIFFRACTION | 2 |
| 3LGG | Crystal structure of human adenosine deaminase growth factor, adenosine deaminase type 2 … | X-RAY DIFFRACTION | 2.5 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q9NZK5-F1 | 96.03 | 0.95 |
Human Protein Atlas
Protein class: Enzymes, ENZYME proteins, Hydrolases, Metabolic proteins, Predicted secreted proteins, Predicted intracellular proteins, Plasma proteins, Disease related genes, Potential drug targets, Human disease related genes
Protein evidence: Evidence at protein level
Antibody reliability (HPA): IH uncertain
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (2)
| Position | Role |
|---|---|
| 359 | proton donor |
| 384 | proton acceptor |
Ligand- & substrate-binding residues (9)
| Position | Role |
|---|---|
| 293 | substrate |
| 326 | substrate |
| 356 | Zn(2+) |
| 441 | Zn(2+) |
| 442 | substrate |
| 112 | Zn(2+) |
| 114 | Zn(2+) |
| 115 | substrate |
| 204–211 | substrate |
Disulfide bonds (1)
| Type | Positions |
|---|---|
| Disulfide bond | 137–159 |
Glycosylation sites (4)
| Type | Positions |
|---|---|
| N-linked (glcnac…) asparagine | 127, 174, 185, 378 |
Mutagenesis-validated functional residues (2)
| Position | Phenotype |
|---|---|
| 137 | abolishes secretion. |
| 362 | reduces dimerization and enzyme activity. |
Function
Pathways and Gene Ontology
Reactome pathways
2 curated (TAS) of 5; 0 disease pathways. Curated-first; evidence = TAS (manually curated) vs IEA (electronic inference).
5 pathways:
| ID | Pathway | Evidence |
|---|---|---|
| R-HSA-6798695 | Neutrophil degranulation | curated |
| R-HSA-5683826 | Surfactant metabolism | curated |
| R-HSA-168256 | Immune System | — |
| R-HSA-168249 | Innate Immune System | — |
| R-HSA-392499 | Metabolism of proteins | — |
MSigDB gene sets: 562 (showing top):
WALLACE_PROSTATE_CANCER_RACE_UP, REACTOME_INNATE_IMMUNE_SYSTEM, MCLACHLAN_DENTAL_CARIES_UP, GOCC_SECRETORY_GRANULE, GOBP_CARBOHYDRATE_DERIVATIVE_CATABOLIC_PROCESS, GOMF_GROWTH_FACTOR_ACTIVITY, WIELAND_UP_BY_HBV_INFECTION, GOBP_CARBOHYDRATE_DERIVATIVE_METABOLIC_PROCESS, GOBP_NUCLEOBASE_CONTAINING_SMALL_MOLECULE_METABOLIC_PROCESS, GOBP_SMALL_MOLECULE_BIOSYNTHETIC_PROCESS, GNF2_MCL1, GNF2_CD1D, HOSHIDA_LIVER_CANCER_SUBCLASS_S3, GOBP_CARBOHYDRATE_DERIVATIVE_BIOSYNTHETIC_PROCESS, MODULE_301
GO Biological Process (3): adenosine catabolic process (GO:0006154), inosine biosynthetic process (GO:0046103), signal transduction (GO:0007165)
GO Molecular Function (10): adenosine deaminase activity (GO:0004000), growth factor activity (GO:0008083), heparin binding (GO:0008201), zinc ion binding (GO:0008270), adenosine receptor binding (GO:0031685), protein homodimerization activity (GO:0042803), proteoglycan binding (GO:0043394), hydrolase activity (GO:0016787), deaminase activity (GO:0019239), metal ion binding (GO:0046872)
GO Cellular Component (2): extracellular region (GO:0005576), azurophil granule lumen (GO:0035578)
Reactome top-level categories
3 top-level categories:
| Category | Pathways |
|---|---|
| Metabolism of proteins | 1 |
| Innate Immune System | 1 |
| Immune System | 1 |
GO top-level categories
27 GO namespaces:
| Category | Terms |
|---|---|
| adenosine metabolic process | 1 |
| purine ribonucleoside catabolic process | 1 |
| inosine metabolic process | 1 |
| purine ribonucleoside biosynthetic process | 1 |
| cell communication | 1 |
| cellular process | 1 |
| signaling | 1 |
| regulation of cellular process | 1 |
| cellular response to stimulus | 1 |
| hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines | 1 |
| deaminase activity | 1 |
| receptor ligand activity | 1 |
| glycosaminoglycan binding | 1 |
| sulfur compound binding | 1 |
| transition metal ion binding | 1 |
| G protein-coupled receptor binding | 1 |
| identical protein binding | 1 |
| protein dimerization activity | 1 |
| protein binding | 1 |
| carbohydrate derivative binding | 1 |
| catalytic activity | 1 |
| hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds | 1 |
| cation binding | 1 |
| cellular anatomical structure | 1 |
| vacuolar lumen | 1 |
| secretory granule lumen | 1 |
| azurophil granule | 1 |
Experimentally-supported GO annotations
GO terms backed by direct experimental evidence (ECO experimental codes) — 6 of 16 annotations. The rest are phylogenetic / computational / electronic (IEA).
6 experimentally-supported GO terms:
| GO term | NS | Evidence |
|---|---|---|
| adenosine catabolic process | BP | direct assay |
| adenosine deaminase activity | MF | direct assay |
| adenosine receptor binding | MF | direct assay |
| protein homodimerization activity | MF | physical interaction |
| proteoglycan binding | MF | direct assay |
| zinc ion binding | MF | direct assay |
Protein interactions and networks
STRING
showing 16 of 1,340 interactions by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| ADA2 | ADA | P00813 | 922 |
| ADA2 | HDHD5 | Q9BXW7 | 458 |
| ADA2 | MAPDA | Q6DHV7 | 457 |
| ADA2 | PNP | P00491 | 452 |
| ADA2 | CECR2 | Q9BXF3 | 427 |
| ADA2 | MEFV | O15553 | 426 |
| ADA2 | XKR3 | Q5GH77 | 403 |
| ADA2 | AMPD2 | Q01433 | 396 |
| ADA2 | MVK | Q03426 | 390 |
| ADA2 | PSTPIP1 | O43586 | 387 |
| ADA2 | ADK | P55263 | 380 |
| ADA2 | P2RY4 | P51582 | 367 |
| ADA2 | OXER1 | Q8TDS5 | 367 |
| ADA2 | GART | P22102 | 363 |
| ADA2 | FAM151A | Q8WW52 | 361 |
| ADA2 | TSR2 | Q969E8 | 361 |
IntAct
Human interaction partners of ADA2 in IntAct, one row per partner (best MIscore; records = supporting IntAct interaction records).
1 partners by confidence:
| Partner | Interaction type | MIscore | Records |
|---|---|---|---|
| TRIO | association | 0.350 | 1 |
Disease & clinical
Genetic variants
Variant evidence for ADA2: 693 ClinVar records (125 pathogenic / likely pathogenic); 1 GWAS association. Per-variant detail is on Sugi Variant.
ClinVar
693 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 91 |
| Likely pathogenic | 34 |
| Uncertain significance | 273 |
| Likely benign | 192 |
| Benign | 31 |
Top pathogenic / likely-pathogenic (15)
Showing the 15 best-reviewed of 125 pathogenic / likely-pathogenic ClinVar records, ranked by ClinVar review status (expert panel → multiple submitters → single submitter), then by number of submitting labs.
| Variant ID | HGVS | Classification | Review | Submitters |
|---|---|---|---|---|
| 541735 | NM_001282225.2(ADA2):c.973-2A>G | Pathogenic | criteria provided, multiple submitters, no conflicts | 17 |
| 120301 | NM_001282225.2(ADA2):c.140G>C (p.Gly47Ala) | Pathogenic | criteria provided, multiple submitters, no conflicts | 12 |
| 1076271 | NM_001282225.2(ADA2):c.139G>C (p.Gly47Arg) | Pathogenic | criteria provided, multiple submitters, no conflicts | 11 |
| 420337 | NM_001282225.2(ADA2):c.1072G>A (p.Gly358Arg) | Pathogenic | criteria provided, multiple submitters, no conflicts | 7 |
| 541731 | NM_001282225.2(ADA2):c.139G>T (p.Gly47Trp) | Pathogenic | criteria provided, multiple submitters, no conflicts | 7 |
| 189342 | NM_001282225.2(ADA2):c.1078A>G (p.Thr360Ala) | Pathogenic | criteria provided, multiple submitters, no conflicts | 6 |
| 640066 | NM_001282225.2(ADA2):c.144del (p.Arg49fs) | Pathogenic | criteria provided, multiple submitters, no conflicts | 4 |
| 852411 | NM_001282225.2(ADA2):c.934C>T (p.Arg312Ter) | Pathogenic | criteria provided, multiple submitters, no conflicts | 4 |
| 1027880 | NM_001282225.2(ADA2):c.882-2A>G | Pathogenic | criteria provided, multiple submitters, no conflicts | 3 |
| 1285514 | NM_001282225.2(ADA2):c.158del (p.Asn53fs) | Pathogenic | criteria provided, multiple submitters, no conflicts | 2 |
| 1407177 | NM_001282225.2(ADA2):c.2T>C (p.Met1Thr) | Pathogenic | criteria provided, multiple submitters, no conflicts | 2 |
| 2889771 | NM_001282225.2(ADA2):c.660C>A (p.Tyr220Ter) | Pathogenic | criteria provided, multiple submitters, no conflicts | 2 |
| 2892125 | NM_001282225.2(ADA2):c.1303_1319del (p.His434_Pro435insTer) | Pathogenic | criteria provided, multiple submitters, no conflicts | 2 |
| 3587771 | NM_001282225.2(ADA2):c.794C>G (p.Ser265Ter) | Pathogenic | criteria provided, multiple submitters, no conflicts | 2 |
| 636596 | NM_001282225.2(ADA2):c.916C>T (p.Arg306Ter) | Likely pathogenic | criteria provided, multiple submitters, no conflicts | 2 |
Per-variant reference — Sugi Variant
Explore ADA2’s pathogenic and likely-pathogenic variants individually — each with its ClinVar classification and conditions, applied ACMG criteria (ClinGen expert panel, where curated), the calibrated in-silico predictors (AlphaMissense, REVEL, SaProt, conservation), gnomAD frequency, and the predictor-disagreement QC signal — on Sugi Variant.
HPA cancer prognostics
RNA cancer specificity: Low cancer specificity
Human Protein Atlas survival analysis — favorable = higher expression predicts better survival.
2 prognostic cancer types:
| Cancer | Prognostic | p-value |
|---|---|---|
| Kidney Renal Clear Cell Carcinoma (TCGA) | favorable | 1.6e-05 |
| Lung Adenocarcinoma (TCGA) | favorable | 2.8e-05 |
Disease associations
OMIM: gene MIM:607575 | disease phenotypes: MIM:615688, MIM:182410, MIM:613953
GenCC curated gene-disease
4 curated gene-disease records:
| Disease | Classification | Inheritance | Records |
|---|---|---|---|
| deficiency of adenosine deaminase 2 | Strong | Autosomal recessive | 4 |
| polyarteritis nodosa | Moderate | Autosomal recessive | |
| Sneddon syndrome | Moderate | Autosomal recessive | 2 |
| Diamond-Blackfan anemia | Supportive | Autosomal dominant |
Genomics England panels (PanelApp)
Clinical diagnostic gene panels including this gene (9 panels, 8 green/diagnostic-grade). Confidence: green = diagnostic, amber = moderate.
9 panels:
| Panel | Rating |
|---|---|
| Autoinflammatory disorders | green |
| COVID-19 research | green |
| Cytopenia - NOT Fanconi anaemia | green |
| Cytopenias and congenital anaemias | green |
| Hereditary neuropathy or pain disorder | green |
| Primary immunodeficiency or monogenic inflammatory bowel disease | green |
| Rare anaemia | green |
| Rare genetic inflammatory skin disorders | green |
| Cerebral vascular malformations | amber |
Mondo (7): deficiency of adenosine deaminase 2 (MONDO:0014306), Sneddon syndrome (MONDO:0008436), autoinflammatory syndrome (MONDO:0019751), immunodeficiency 51 (MONDO:0013500), neurodevelopmental disorder (MONDO:0700092), polyarteritis nodosa (MONDO:0019170), Diamond-Blackfan anemia (MONDO:0015253)
Orphanet (5): Deficiency of adenosine deaminase 2 (Orphanet:404553), Sneddon syndrome (Orphanet:820), Autoinflammatory syndrome (Orphanet:93665), Chronic mucocutaneous candidiasis (Orphanet:1334), Polyarteritis nodosa (Orphanet:767)
GWAS associations
1 associations:
| Study | Trait | p-value |
|---|---|---|
| GCST002701_35 | Verbal declarative memory | 1e-6 |
EFO canonical traits (from GWAS)
2 canonical traits:
| EFO ID | Trait name |
|---|---|
| EFO:0004874 | memory performance |
| EFO:0006805 | word list delayed recall measurement |
MeSH disease descriptors
4 disease descriptors:
| Descriptor | Name | Tree numbers |
|---|---|---|
| D029503 | Anemia, Diamond-Blackfan | C15.378.050.085.080.090; C15.378.050.750.500; C15.378.190.223.500.500.090; C16.320.077.090 |
| D065886 | Neurodevelopmental Disorders | F03.625 |
| D010488 | Polyarteritis Nodosa | C14.907.940.090.720; C14.907.940.897.500; C17.800.862.625 |
| D018860 | Sneddon Syndrome | C10.228.140.300.750; C14.907.253.774; C17.800.862.775 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (CPIC guideline: no)
CTD chemical–gene interactions
32 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects expression, increases expression, affects cotreatment, decreases expression | 9 |
| trichostatin A | decreases expression | 2 |
| Phenylmercuric Acetate | decreases expression, affects cotreatment | 2 |
| Aflatoxin B1 | affects methylation, decreases methylation, increases methylation | 2 |
| GSK-J4 | decreases expression | 1 |
| methylmercuric chloride | decreases expression | 1 |
| 2,5,2’,5’-tetrachlorobiphenyl | increases expression | 1 |
| sodium arsenite | increases expression | 1 |
| benzo(e)pyrene | increases methylation | 1 |
| aflatoxin B2 | increases methylation | 1 |
| entinostat | decreases expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, decreases expression | 1 |
| dorsomorphin | affects cotreatment, decreases expression | 1 |
| (+)-JQ1 compound | decreases expression | 1 |
| Vorinostat | decreases expression | 1 |
| Amiodarone | increases expression | 1 |
| Arsenic | affects methylation | 1 |
| Benzo(a)pyrene | affects methylation | 1 |
| Doxorubicin | decreases expression | 1 |
| Methapyrilene | increases methylation | 1 |
| Naled | affects expression | 1 |
| Nickel | increases expression | 1 |
| Smoke | decreases expression | 1 |
| Thimerosal | decreases expression | 1 |
| Tobacco Smoke Pollution | decreases expression | 1 |
| Tretinoin | decreases expression | 1 |
| Triclosan | decreases expression | 1 |
| Isotretinoin | increases expression | 1 |
| 1-Methyl-4-phenylpyridinium | increases expression | 1 |
| Antirheumatic Agents | decreases expression | 1 |
Cellosaurus cell lines
1 cell lines: 1 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_E1CN | Ubigene THP-1 ADA2 KO | Cancer cell line | Male |
Clinical trials (associated diseases)
Via MONDO — disease-level, not drug-specific.
showing 60 of 359 trials:
| NCT | Phase | Status | Title |
|---|---|---|---|
| NCT00307671 | Phase 4 | COMPLETED | Treatment of Necrotizing Vasculitides for Patients Older Than 65 Years |
| NCT00400075 | Phase 4 | UNKNOWN | CHUSPAN PAN BP Treatment of Polyarteritis Nodosa and Microscopic Polyangiitis Without Poor-Prognosis Factors |
| NCT00673608 | Phase 4 | COMPLETED | Magnetic Resonance Imaging (MRI) Assessments of the Heart and Liver Iron Load in Patients With Transfusion Induced Iron Overload |
| NCT05879419 | Phase 4 | ACTIVE_NOT_RECRUITING | Recombinant Herpes Zoster Vaccine in Patients With Autoimmune Rheumatic Diseases |
| NCT04586348 | Phase 4 | UNKNOWN | Prenatal Iodine Supplementation and Early Childhood Neurodevelopment |
| NCT04873115 | Phase 4 | UNKNOWN | Double-blind, Placebo-controlled, Randomized Clinical Trial Comparing the Efficacy and Safety of Sialanar Plus orAl rehabiLitation Against Placebo Plus Oral Rehabilitation for chIldren and Adolescents With seVere Sialorrhoea and Neurodisabilties, |
| NCT00647166 | Phase 3 | COMPLETED | Association Corticosteroid/Azathioprine in Microscopic Polyangiitis/ Polyarteritis Nodosa or Eosinophilic Granulomatosis With Polyangiitis (Churg Strauss Syndrome) |
| NCT00235391 | Phase 3 | COMPLETED | Expanded Access of Deferasirox to Patients With Congenital Disorders of Red Blood Cells and Chronic Iron Overload |
| NCT00995709 | Phase 3 | COMPLETED | Phase III Study in Refractory Behcet’s Disease |
| NCT01532570 | Phase 3 | COMPLETED | Clinical Study of TA-650 in Patients With Behcet’s Disease (BD) With Special Lesions |
| NCT02307513 | Phase 3 | COMPLETED | A Phase 3 Randomized, Double-blind Study to Evaluate the Efficacy and Safety of Apremilast (CC-10004) in Subjects With Active Behçet’s Disease |
| NCT02505568 | Phase 3 | COMPLETED | A Study to Evaluate Efficacy and Safety of Infliximab in Participant With Moderate-to-Severe Refractory Intestinal Behcet’s Disease |
| NCT03209219 | Phase 3 | COMPLETED | Interferon α2a Versus Cyclosporine for Refractory Behçet’s Disease Uveitis |
| NCT04528082 | Phase 3 | RECRUITING | Apremilast Pediatric Study in Children With Active Oral Ulcers Associated With Behçet’s Disease |
| NCT05767047 | Phase 3 | RECRUITING | A Study of Apremilast in Children With Oral Ulcers Associated With Behçet’s Disease or Juvenile Psoriatic Arthritis |
| NCT06145893 | Phase 3 | RECRUITING | A Study of Efficacy and Safety of Hemay005 Tablets in Patients With Behçet’s Disease |
| NCT06780462 | Phase 3 | RECRUITING | Randomized Controlled Multicenter Study Comparing Steroid Therapy Plus Anticoagulants to Steroid Therapy Alone in Deep Venous Thrombosis of Behçet’s Syndrome |
| NCT06925698 | Phase 3 | NOT_YET_RECRUITING | Immunosuppressive Therapy Alone Versus Plus Oral Anticoagulation in the Treatment of VT Associated With Behcet’s Disease |
| NCT02559102 | Phase 3 | COMPLETED | Dexmedetomidine Sedation Versus General Anaesthesia for Inguinal Hernia Surgery in Infants |
| NCT02757079 | Phase 3 | COMPLETED | Study of the Efficacy and Safety of NPC-15 for Sleep Disorders of Children With Neurodevelopmental Disorders |
| NCT06915480 | Phase 3 | RECRUITING | Reducing Missed Appointments |
| NCT07377032 | Phase 3 | RECRUITING | TAP-GRIN: Interventional Study on Patients With GRIN-related Neurodevelopmental Disorders |
| NCT00001457 | Phase 2 | COMPLETED | Lamivudine for Chronic Hepatitis B |
| NCT00751517 | Phase 2 | UNKNOWN | Cyclophosphamide Versus Methotrexate for Remission Maintenance in Systemic Necrotizing Vasculitides |
| NCT03482479 | Phase 2 | COMPLETED | Low Dose Naltrexone to Improve Physical Health in Patients With Vasculitis |
| NCT05168475 | Phase 2 | TERMINATED | Biologics in Refractory Vasculitis: A Trial of Biologic Therapy for Refractory Primary Non-ANCA Associated Vasculitis |
| NCT00001962 | Phase 2 | TERMINATED | A Study to Determine Whether Therapy With Daclizumab Will Benefit Patients With Bone Marrow Failure |
| NCT00011505 | Phase 2 | COMPLETED | Mobilization of Stem Cells With G-CSF for Collection From Patients With Diamond-Blackfan Anemia |
| NCT00301834 | Phase 2 | COMPLETED | Alemtuzumab, Fludarabine, and Busulfan Followed By Donor Stem Cell Transplant in Treating Young Patients With Hematologic Disorders |
| NCT00957931 | Phase 2 | COMPLETED | Allo-HCT MUD for Non-malignant Red Blood Cell (RBC) Disorders: Sickle Cell, Thal, and DBA: Reduced Intensity Conditioning, Co-tx MSCs |
| NCT01529827 | Phase 2 | COMPLETED | Fludarabine Phosphate, Melphalan, and Low-Dose Total-Body Irradiation Followed by Donor Peripheral Blood Stem Cell Transplant in Treating Patients With Hematologic Malignancies |
| NCT02386267 | Phase 2 | UNKNOWN | L-leucine in Diamond Blackfan Anemia Patients |
| NCT02512679 | Phase 2 | TERMINATED | Related Hematopoietic Stem Cell Transplantation (HSCT) for Genetic Diseases of Blood Cells |
| NCT03333486 | Phase 2 | TERMINATED | Fludarabine Phosphate, Cyclophosphamide, Total Body Irradiation, and Donor Stem Cell Transplant in Treating Patients With Blood Cancer |
| NCT04099966 | Phase 2 | RECRUITING | AlloSCT for Malignant and Non-malignant Hematologic Diseases Utilizing Alpha/Beta T Cell and CD19+ B Cell Depletion |
| NCT04965597 | Phase 2 | COMPLETED | Treosulfan-Based Conditioning Regimen Before a Blood or Bone Marrow Transplant for the Treatment of Bone Marrow Failure Diseases (BMT CTN 1904) |
| NCT00442182 | Phase 2 | UNKNOWN | The Efficacy and Safety of ITF2357 in AIS |
| NCT00001865 | Phase 2 | COMPLETED | HAT in Eye Complications of Behcet’s Disease |
| NCT00483184 | Phase 2 | COMPLETED | Low Dose Interferon Alpha Treatment for Oral Ulcers of Behcet’s Disease |
| NCT00664599 | Phase 2 | COMPLETED | Rituximab for the Treatment of Severe Ocular Manifestations of Behcet’s Disease |
| NCT00700297 | Phase 2 | COMPLETED | Colchicine Randomized Double-Blind Controlled Crossover Study in Behcet’s Disease |
| NCT00866359 | Phase 2 | COMPLETED | A Study to Evaluate the Efficacy and Safety of Apremilast (CC-10004) in the Treatment of Behçet Disease |
| NCT01693653 | Phase 2 | TERMINATED | Tocilizumab for the Treatment of Behcet’s Syndrome |
| NCT02648581 | Phase 2 | COMPLETED | Efficacy and Safety of Ustekinumab, a Human Monoclonal Anti-IL-12/IL-23 Antibody, in Patients With Behçet Disease |
| NCT02756650 | Phase 2 | COMPLETED | 1 Year of Treatment With Canakinumab in Behçet’s Disease Patients With Neurologic or Vascular Involvement |
| NCT03554161 | Phase 2 | TERMINATED | Tocilizumab for the Treatment of Refractory Behcet’s Uveitis |
| NCT04186559 | Phase 2 | UNKNOWN | Topical Pentoxifylline Gel on Behcet’s Disease Genital Ulcers |
| NCT04218565 | Phase 2 | TERMINATED | Golimumab for the Treatment of Refractory Behcet’s Uveitis |
| NCT04609397 | Phase 2 | TERMINATED | A Study to Evaluate the Efficacy and Safety of Hemay005 in the Treatment of Behçet Disease |
| NCT06386744 | Phase 2 | COMPLETED | Dusquetide for the Treatment of Behcet’s Disease |
| NCT06794008 | Phase 2 | RECRUITING | BCMA-CD19 CAR-T Therapy for Refractory Autoimmune Diseases |
| NCT07080346 | Phase 2 | COMPLETED | Upadacitinib for Refractory Behcet’s Syndrome |
| NCT07634848 | Phase 2 | WITHDRAWN | Ivarmacitinib for Refractory Behcet’s Syndrome |
| NCT07833163 | Phase 2 | NOT_YET_RECRUITING | Corticotropin for Behçet’s Disease: A Multicenter Randomized Controlled TrialAcronym. |
| NCT02909959 | Phase 2 | COMPLETED | Sulforaphane for the Treatment of Young Men With Autism Spectrum Disorder |
| NCT06081348 | Phase 2 | RECRUITING | Sertraline vs. Placebo in the Treatment of Anxiety in Children and AdoLescents With NeurodevelopMental Disorders |
| NCT06352372 | Phase 2 | COMPLETED | Safety and Efficacy of tPBM for Epileptiform Activity in Autism |
| NCT01586455 | Phase 1 | COMPLETED | Human Placental-Derived Stem Cell Transplantation |
| NCT01917708 | Phase 1 | COMPLETED | Bone Marrow Transplant With Abatacept for Non-Malignant Diseases |
| NCT00550498 | Phase 1 | TERMINATED | Stem Cell Transplantation in Ocular Lesions of Behcet’s Disease |
Related Atlas pages
- Associated diseases: polyarteritis nodosa, Sneddon syndrome, deficiency of adenosine deaminase 2, Diamond-Blackfan anemia
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): autoinflammatory syndrome, Behcet disease, chromosome 22q11.2 microduplication syndrome, deficiency of adenosine deaminase 2, Diamond-Blackfan anemia, polyarteritis nodosa, Sneddon syndrome