ADAMTS19
gene geneOn this page
Summary
ADAMTS19 (ADAM metallopeptidase with thrombospondin type 1 motif 19, HGNC:17111) is a protein-coding gene on chromosome 5q23.3, encoding A disintegrin and metalloproteinase with thrombospondin motifs 19 (Q8TE59).
This gene encodes a member of the ADAMTS (a disintegrin and metalloproteinase with thrombospondin motif) protein family. Members of the family share several distinct protein modules, including a propeptide region, a metalloproteinase domain, a disintegrin-like domain, and a thrombospondin type 1 (TS) motif. Individual members of this family differ in the number of C-terminal TS motifs, and some have unique C-terminal domains. The protein encoded by this gene has high sequence similarity to the protein encoded by ADAMTS16, another family member.
Source: NCBI Gene 171019 — RefSeq curated summary.
At a glance
- Gene–disease (curated): cardiac valvular dysplasia 2 (Strong, GenCC) — +1 more curated relationship
- GWAS associations: 12
- Clinical variants (ClinVar): 228 total — 10 pathogenic, 4 likely-pathogenic
- Phenotypes (HPO): 19
- MANE Select transcript:
NM_133638
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:17111 |
| Approved symbol | ADAMTS19 |
| Name | ADAM metallopeptidase with thrombospondin type 1 motif 19 |
| Location | 5q23.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Ensembl gene | ENSG00000145808 |
| Ensembl biotype | protein_coding |
| OMIM | 607513 |
| Entrez | 171019 |
Gene structure
Transcript identifiers
Ensembl transcripts: 12 — 9 protein_coding, 2 nonsense_mediated_decay, 1 protein_coding_CDS_not_defined
ENST00000274487, ENST00000502709, ENST00000505791, ENST00000509467, ENST00000913209, ENST00000913210, ENST00000913211, ENST00000913212, ENST00000913213, ENST00000913214, ENST00000913215, ENST00000913216
RefSeq mRNA: 1 — MANE Select: NM_133638
NM_133638
CCDS: CCDS4146
Canonical transcript exons
ENST00000274487 — 23 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001084115 | 129665499 | 129665579 |
| ENSE00001172253 | 129734932 | 129735109 |
| ENSE00001172271 | 129684120 | 129684273 |
| ENSE00001172275 | 129679764 | 129679921 |
| ENSE00001172284 | 129658617 | 129658737 |
| ENSE00001172288 | 129654306 | 129654433 |
| ENSE00001172291 | 129648798 | 129648970 |
| ENSE00001172300 | 129647765 | 129647895 |
| ENSE00001172309 | 129641859 | 129641960 |
| ENSE00001172315 | 129622198 | 129622348 |
| ENSE00001172322 | 129620618 | 129620758 |
| ENSE00001231892 | 129596559 | 129596664 |
| ENSE00001231905 | 129528520 | 129528677 |
| ENSE00001231923 | 129526284 | 129526456 |
| ENSE00001231943 | 129461102 | 129461757 |
| ENSE00001386494 | 129737067 | 129738683 |
| ENSE00002085506 | 129460298 | 129460482 |
| ENSE00002445916 | 129551864 | 129551907 |
| ENSE00003460114 | 129701388 | 129701592 |
| ENSE00003475106 | 129694720 | 129694855 |
| ENSE00003533621 | 129509077 | 129509242 |
| ENSE00003551253 | 129527748 | 129527831 |
| ENSE00003684629 | 129704239 | 129704391 |
Expression profiles
Bgee: expression breadth ubiquitous, 137 present calls, max score 84.88.
FANTOM5 (CAGE): breadth broad, TPM avg 1.2105 / max 30.7434, expressed in 339 samples.
FANTOM5 promoters (3 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 58380 | 0.6513 | 227 |
| 58379 | 0.3809 | 214 |
| 58381 | 0.1783 | 110 |
Top tissues by expression
237 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| adrenal tissue | UBERON:0018303 | 84.88 | gold quality |
| buccal mucosa cell | CL:0002336 | 82.57 | silver quality |
| body of uterus | UBERON:0009853 | 77.62 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 74.84 | gold quality |
| endocervix | UBERON:0000458 | 74.69 | gold quality |
| smooth muscle tissue | UBERON:0001135 | 73.72 | gold quality |
| myometrium | UBERON:0001296 | 73.47 | gold quality |
| uterine cervix | UBERON:0000002 | 72.42 | gold quality |
| placenta | UBERON:0001987 | 71.13 | gold quality |
| uterus | UBERON:0000995 | 70.88 | gold quality |
| ectocervix | UBERON:0012249 | 70.61 | gold quality |
| left uterine tube | UBERON:0001303 | 69.69 | gold quality |
| lower esophagus muscularis layer | UBERON:0035833 | 67.77 | gold quality |
| lower esophagus | UBERON:0013473 | 67.60 | gold quality |
| endometrium | UBERON:0001295 | 66.95 | gold quality |
| corpus callosum | UBERON:0002336 | 65.88 | gold quality |
| prefrontal cortex | UBERON:0000451 | 63.97 | gold quality |
| female reproductive system | UBERON:0000474 | 63.86 | gold quality |
| pigmented layer of retina | UBERON:0001782 | 63.82 | silver quality |
| caudate nucleus | UBERON:0001873 | 63.76 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 63.58 | gold quality |
| putamen | UBERON:0001874 | 62.10 | gold quality |
| Brodmann (1909) area 9 | UBERON:0013540 | 61.33 | gold quality |
| nucleus accumbens | UBERON:0001882 | 60.99 | gold quality |
| right ovary | UBERON:0002118 | 60.70 | gold quality |
| decidua | UBERON:0002450 | 60.55 | gold quality |
| lower lobe of lung | UBERON:0008949 | 59.35 | silver quality |
| ovary | UBERON:0000992 | 59.27 | gold quality |
| frontal cortex | UBERON:0001870 | 58.71 | gold quality |
| right frontal lobe | UBERON:0002810 | 58.69 | gold quality |
Single-cell (SCXA)
Detected in 2 experiment(s), a significant marker in 2.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-CURD-119 | yes | 32.43 |
| E-ANND-3 | yes | 5.84 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
114 targeting ADAMTS19, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-6867-5P | 100.00 | 82.21 | 3464 |
| HSA-MIR-5692A | 100.00 | 74.40 | 6850 |
| HSA-MIR-340-5P | 100.00 | 72.50 | 4437 |
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-29A-3P | 100.00 | 73.11 | 1835 |
| HSA-MIR-29B-3P | 100.00 | 73.18 | 1833 |
| HSA-MIR-29C-3P | 100.00 | 73.15 | 1833 |
| HSA-MIR-5692B | 100.00 | 71.32 | 2622 |
| HSA-MIR-5692C | 100.00 | 71.32 | 2622 |
| HSA-MIR-4262 | 100.00 | 73.26 | 3931 |
| HSA-MIR-4668-3P | 100.00 | 68.74 | 2635 |
| HSA-MIR-181A-5P | 99.99 | 72.96 | 2995 |
| HSA-MIR-181B-5P | 99.99 | 72.97 | 2996 |
| HSA-MIR-181C-5P | 99.99 | 72.95 | 2996 |
| HSA-MIR-181D-5P | 99.99 | 73.04 | 2997 |
| HSA-MIR-4775 | 99.98 | 75.00 | 6394 |
| HSA-MIR-551B-5P | 99.96 | 71.28 | 3493 |
| HSA-MIR-5688 | 99.96 | 73.23 | 4504 |
| HSA-MIR-495-3P | 99.96 | 72.81 | 4197 |
| HSA-MIR-590-3P | 99.96 | 74.34 | 6478 |
| HSA-MIR-6753-3P | 99.93 | 66.57 | 637 |
| HSA-MIR-7107-3P | 99.93 | 66.73 | 627 |
| HSA-MIR-4760-3P | 99.93 | 70.50 | 2385 |
| HSA-MIR-539-5P | 99.93 | 70.30 | 2855 |
| HSA-MIR-1297 | 99.91 | 73.41 | 3162 |
| HSA-MIR-589-3P | 99.91 | 69.62 | 2088 |
| HSA-MIR-6809-3P | 99.91 | 71.45 | 3814 |
| HSA-MIR-374A-5P | 99.90 | 71.34 | 2923 |
| HSA-MIR-374B-5P | 99.90 | 69.98 | 2734 |
| HSA-MIR-380-3P | 99.89 | 70.18 | 1978 |
Literature-anchored findings (GeneRIF, showing 7)
- Although limited by sample size, this proof-of-principle study’s findings reveal ADAMTS19 as a possible candidate gene for premature ovarian failure and thus a larger follow-up study is warranted. (PMID:19508998)
- Synergistic interactions were detected between SNPs, including a non-synonymous SNP, and diplotypes within IGF2R and ADAMTS19 which may contribute to POF. (PMID:24014609)
- We found that the AAAAA, AGGAG, and AGGGA haplotypes in ACVR2B were associated with susceptibility to Premature Ovarian Failure when they also had at least one CATAG haplotype in ADAMTS19. (PMID:25051287)
- The pregnancy loss rate does not appear to be affected by both ADAMTS-13 and ADAMTS-19. (PMID:28088271)
- Mutations in ADAMTS19 lead to progressive heart valve disease. (PMID:31844321)
- ADAMTS19-associated heart valve defects: Novel genetic variants consolidating a recognizable cardiac phenotype. (PMID:32323311)
- ADAMTS19 Suppresses Cell Migration and Invasion by Targeting S100A16 via the NF-kappaB Pathway in Human Gastric Cancer. (PMID:33921267)
Cross-species orthologs
2 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| mus_musculus | Adamts19 | ENSMUSG00000053441 |
| rattus_norvegicus | Adamts19 | ENSRNOG00000019577 |
Paralogs (25): ADAMTS6 (ENSG00000049192), ADAMTS2 (ENSG00000087116), PAPLN (ENSG00000100767), ADAMTS8 (ENSG00000134917), ADAMTS7 (ENSG00000136378), ADAMTS14 (ENSG00000138316), ADAMTS17 (ENSG00000140470), ADAMTS18 (ENSG00000140873), ADAMTS10 (ENSG00000142303), ADAMTSL4 (ENSG00000143382), ADAMTS16 (ENSG00000145536), ADAMTS12 (ENSG00000151388), ADAMTS1 (ENSG00000154734), ADAMTS5 (ENSG00000154736), ADAMTS3 (ENSG00000156140), ADAMTSL3 (ENSG00000156218), ADAMTS4 (ENSG00000158859), ADAMTS13 (ENSG00000160323), ADAMTS9 (ENSG00000163638), ADAMTS15 (ENSG00000166106), ADAMTS20 (ENSG00000173157), ADAMTSL1 (ENSG00000178031), ADAMTSL5 (ENSG00000185761), THSD4 (ENSG00000187720), ADAMTSL2 (ENSG00000197859)
Protein
Protein identifiers
A disintegrin and metalloproteinase with thrombospondin motifs 19 — Q8TE59 (reviewed: Q8TE59)
All UniProt accessions (4): A0A1X7SBR9, D6R9M2, Q8TE59, H0Y8Y0
UniProt curated annotations — full annotation on UniProt →
Subcellular location. Secreted. Extracellular space. Extracellular matrix.
Tissue specificity. Expressed in fetal lung, but not in any adult tissues examined. Expression was detected in an osteosarcoma cDNA library.
Post-translational modifications. The precursor is cleaved by a furin endopeptidase. Glycosylated. Can be O-fucosylated by POFUT2 on a serine or a threonine residue found within the consensus sequence C1-X(2)-(S/T)-C2-G of the TSP type-1 repeat domains where C1 and C2 are the first and second cysteine residue of the repeat, respectively. Fucosylated repeats can then be further glycosylated by the addition of a beta-1,3-glucose residue by the glucosyltransferase, B3GALTL. Fucosylation mediates the efficient secretion of ADAMTS family members. Can also be C-glycosylated with one or two mannose molecules on tryptophan residues within the consensus sequence W-X-X-W of the TPRs, and N-glycosylated. These other glycosylations can also facilitate secretion.
Disease relevance. Cardiac valvular dysplasia 2 (CVDP2) [MIM:620067] An autosomal recessive form of congenital heart defects, characterized primarily by congenital stenosis and insufficiency of the semilunar valves, although mild insufficiency of the atrioventricular valves has been observed as well. Other features include subaortic stenosis and dilation of the ascending aorta and/or pulmonary artery in some patients. The disease is caused by variants affecting the gene represented in this entry.
Cofactor. Binds 1 zinc ion per subunit.
Domain organisation. The conserved cysteine present in the cysteine-switch motif binds the catalytic zinc ion, thus inhibiting the enzyme. The dissociation of the cysteine from the zinc ion upon the activation-peptide release activates the enzyme.
RefSeq proteins (1): NP_598377* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000884 | TSP1_rpt | Repeat |
| IPR001590 | Peptidase_M12B | Domain |
| IPR006586 | ADAM_Cys-rich | Domain |
| IPR010294 | ADAMTS_spacer1 | Domain |
| IPR010909 | PLAC | Domain |
| IPR013273 | ADAMTS/ADAMTS-like | Family |
| IPR024079 | MetalloPept_cat_dom_sf | Homologous_superfamily |
| IPR036383 | TSP1_rpt_sf | Homologous_superfamily |
| IPR041645 | ADAMTS_CR_2 | Domain |
| IPR050439 | ADAMTS_ADAMTS-like | Family |
| IPR056270 | ADAMTS17/19_C | Domain |
Pfam: PF00090, PF01421, PF05986, PF17771, PF19030, PF23178
UniProt features (51 total): disulfide bond 14, domain 8, sequence variant 6, glycosylation site 5, compositionally biased region 4, binding site 4, region of interest 3, sequence conflict 2, signal peptide 1, propeptide 1, short sequence motif 1, active site 1, chain 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q8TE59-F1 | 68.76 | 0.11 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (1): 489
Ligand- & substrate-binding residues (4): 300 (in inhibited form); 488; 492; 498
Disulfide bonds (14): 407–472, 447–454, 466–546, 505–530, 575–599, 586–607, 594–626, 620–631, 651–686, 655–691, 666–676, 994–1037, 998–1042, 1009–1026
Glycosylation sites (5): 266, 803, 913, 955, 1015
Function
Pathways and Gene Ontology
Reactome pathways
2 pathways
| ID | Pathway |
|---|---|
| R-HSA-5083635 | Defective B3GALTL causes PpS |
| R-HSA-5173214 | O-glycosylation of TSR domain-containing proteins |
MSigDB gene sets: 168 (showing top):
GOBP_CARDIAC_CHAMBER_DEVELOPMENT, GOBP_CARDIAC_SEPTUM_DEVELOPMENT, GOBP_VENTRICULAR_SEPTUM_MORPHOGENESIS, GOBP_COLLAGEN_FIBRIL_ORGANIZATION, GOMF_METALLOPEPTIDASE_ACTIVITY, GOBP_CARDIAC_CHAMBER_MORPHOGENESIS, GOZGIT_ESR1_TARGETS_DN, AREB6_01, TCF4_Q5, GOBP_ANIMAL_ORGAN_MORPHOGENESIS, CREIGHTON_ENDOCRINE_THERAPY_RESISTANCE_1, MYCMAX_01, GOBP_HEART_MORPHOGENESIS, WTGAAAT_UNKNOWN, ATTACAT_MIR3803P
GO Biological Process (8): aortic valve morphogenesis (GO:0003180), mitral valve morphogenesis (GO:0003183), pulmonary valve morphogenesis (GO:0003184), tricuspid valve morphogenesis (GO:0003186), proteolysis (GO:0006508), extracellular matrix organization (GO:0030198), collagen fibril organization (GO:0030199), ventricular septum morphogenesis (GO:0060412)
GO Molecular Function (3): metalloendopeptidase activity (GO:0004222), metal ion binding (GO:0046872), metallopeptidase activity (GO:0008237)
GO Cellular Component (1): extracellular matrix (GO:0031012)
Reactome top-level categories
Rollup of top-2 pathways:
| Category | Pathways |
|---|---|
| Diseases associated with O-glycosylation of proteins | 1 |
| O-linked glycosylation | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| heart valve morphogenesis | 2 |
| atrioventricular valve morphogenesis | 2 |
| aortic valve development | 1 |
| mitral valve development | 1 |
| pulmonary valve development | 1 |
| tricuspid valve development | 1 |
| protein metabolic process | 1 |
| extracellular structure organization | 1 |
| external encapsulating structure organization | 1 |
| extracellular matrix organization | 1 |
| ventricular septum development | 1 |
| cardiac septum morphogenesis | 1 |
| endopeptidase activity | 1 |
| metallopeptidase activity | 1 |
| cation binding | 1 |
| peptidase activity | 1 |
| external encapsulating structure | 1 |
Protein interactions and networks
STRING
674 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| ADAMTS19 | OR8A1 | Q8NGG7 | 398 |
| ADAMTS19 | PRSS56 | P0CW18 | 393 |
| ADAMTS19 | ISOC1 | Q96CN7 | 391 |
| ADAMTS19 | MINAR2 | P59773 | 380 |
| ADAMTS19 | SLC27A6 | Q9Y2P4 | 378 |
| ADAMTS19 | OR5M9 | Q8NGP3 | 367 |
| ADAMTS19 | LRRC71 | Q8N4P6 | 361 |
| ADAMTS19 | ANHX | E9PGG2 | 355 |
| ADAMTS19 | OR9Q2 | Q8NGE9 | 344 |
| ADAMTS19 | FRMD7 | Q6ZUT3 | 338 |
| ADAMTS19 | THBS1 | P07996 | 327 |
| ADAMTS19 | SH3BP1 | Q9Y3L3 | 320 |
| ADAMTS19 | PRRT4 | C9JH25 | 305 |
| ADAMTS19 | SPMIP10 | Q6ZNM6 | 299 |
| ADAMTS19 | OR4X1 | Q8NH49 | 299 |
IntAct
3 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| ADAMTS19 | H2BC9 | psi-mi:“MI:0915”(physical association) | 0.400 |
| SCGB2A2 | RTL8C | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (3): HIST1H2BH (Proximity Label-MS), ADAMTS19 (Affinity Capture-MS), SENP5 (Cross-Linking-MS (XL-MS))
ESM2 similar proteins: A0A0G2K1Q8, A0AAQ4VMX2, A2VE29, A6X935, O00534, O02668, O09126, O97827, P01029, P09172, P14046, P19823, P19827, P28665, P28666, P48831, P59509, P70505, P79263, P97278, P97279, Q00193, Q03626, Q0VCM5, Q14624, Q29052, Q3T052, Q3UV74, Q5RER0, Q60813, Q61702, Q61703, Q64237, Q68CI2, Q6IE52, Q75WE7, Q7Z3S7, Q86UX2, Q8BG22, Q8BJD1
Diamond homologs: A7MBS7, A8WGB1, B3EWY9, B3EWZ3, B3EWZ8, C0HL12, C5IAW9, D3YXG0, D3ZTD8, F1LW30, G5ECS8, O08721, O08722, O08747, O14514, O15072, O60241, O60242, O95185, O95450, P07996, P10643, P11680, P27590, P27918, P35440, P35441, P35442, P35446, P35447, P35448, P57110, P58397, P59384, P59509, P59510, P59511, P79331, Q03350, Q19204
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
228 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 10 |
| Likely pathogenic | 4 |
| Uncertain significance | 181 |
| Likely benign | 15 |
| Benign | 4 |
Top pathogenic / likely-pathogenic (14)
| Variant ID | HGVS | Classification |
|---|---|---|
| 155679 | GRCh38/hg38 5q14.3-31.1(chr5:91411708-131319563)x1 | Pathogenic |
| 1706508 | GRCh37/hg19 5q23.2-23.3(chr5:124997035-128900524)x1 | Pathogenic |
| 1707568 | NM_133638.6(ADAMTS19):c.1984C>T (p.Arg662Ter) | Pathogenic |
| 1707569 | NM_133638.6(ADAMTS19):c.2003+1G>T | Pathogenic |
| 1707571 | NM_133638.6(ADAMTS19):c.1957C>T (p.Arg653Ter) | Pathogenic |
| 2050921 | NM_133638.6(ADAMTS19):c.270del (p.Ser91fs) | Pathogenic |
| 2063500 | NM_133638.6(ADAMTS19):c.237_238del (p.Gln81fs) | Pathogenic |
| 2155981 | NM_133638.6(ADAMTS19):c.1930G>T (p.Glu644Ter) | Pathogenic |
| 4845660 | NM_133638.6(ADAMTS19):c.2425+1G>A | Pathogenic |
| 688598 | GRCh37/hg19 5q14.3-23.3(chr5:89949118-129317455)x3 | Pathogenic |
| 3032008 | NM_133638.6(ADAMTS19):c.2923C>T (p.Arg975Ter) | Likely pathogenic |
| 3354014 | NM_133638.6(ADAMTS19):c.3084del (p.Lys1030fs) | Likely pathogenic |
| 3897987 | NM_133638.6(ADAMTS19):c.1478+1G>A | Likely pathogenic |
| 4849330 | NM_133638.6(ADAMTS19):c.2922dup (p.Arg975fs) | Likely pathogenic |
SpliceAI
4385 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 5:129460479:TCAGG:T | donor_loss | 1.0000 |
| 5:129460480:CAGG:C | donor_loss | 1.0000 |
| 5:129460481:AGGTA:A | donor_loss | 1.0000 |
| 5:129460482:GGTA:G | donor_loss | 1.0000 |
| 5:129460483:G:GG | donor_gain | 1.0000 |
| 5:129460484:T:A | donor_loss | 1.0000 |
| 5:129509230:G:GA | donor_gain | 1.0000 |
| 5:129527832:G:GG | donor_gain | 1.0000 |
| 5:129528517:CA:C | acceptor_loss | 1.0000 |
| 5:129528518:A:AG | acceptor_gain | 1.0000 |
| 5:129528518:AGCC:A | acceptor_loss | 1.0000 |
| 5:129528519:G:GC | acceptor_gain | 1.0000 |
| 5:129528519:GC:G | acceptor_gain | 1.0000 |
| 5:129528519:GCC:G | acceptor_gain | 1.0000 |
| 5:129528519:GCCA:G | acceptor_gain | 1.0000 |
| 5:129528674:CAAGG:C | donor_loss | 1.0000 |
| 5:129528675:AAGGT:A | donor_loss | 1.0000 |
| 5:129528676:AGGT:A | donor_loss | 1.0000 |
| 5:129528677:GGT:G | donor_loss | 1.0000 |
| 5:129528678:G:GC | donor_loss | 1.0000 |
| 5:129528679:T:A | donor_loss | 1.0000 |
| 5:129551862:A:AG | acceptor_gain | 1.0000 |
| 5:129551863:G:GG | acceptor_gain | 1.0000 |
| 5:129596665:G:GG | donor_gain | 1.0000 |
| 5:129620611:A:AG | acceptor_gain | 1.0000 |
| 5:129620612:A:G | acceptor_gain | 1.0000 |
| 5:129641857:A:AG | acceptor_gain | 1.0000 |
| 5:129641857:AGCAT:A | acceptor_gain | 1.0000 |
| 5:129641858:G:GG | acceptor_gain | 1.0000 |
| 5:129641858:GC:G | acceptor_gain | 1.0000 |
AlphaMissense
7948 scored. Top likely-pathogenic:
dbSNP variants (sampled 300 via entrez): RS1000008939 (5:129477519 A>G), RS1000026617 (5:129735725 A>G), RS1000028984 (5:129707071 G>A,T), RS1000036421 (5:129614587 T>C), RS1000036937 (5:129650639 G>T), RS1000042785 (5:129585565 G>T), RS1000056854 (5:129533585 T>C), RS1000072071 (5:129707075 A>G), RS1000108171 (5:129495610 G>T), RS1000109288 (5:129584507 A>G), RS1000125916 (5:129566998 G>A), RS1000126172 (5:129588986 G>A,T), RS1000126440 (5:129700148 G>C), RS1000141337 (5:129579406 G>T), RS1000143346 (5:129658116 C>A,G,T)
Disease associations
OMIM: gene MIM:607513 | disease phenotypes: MIM:620067
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| cardiac valvular dysplasia 2 | Strong | Autosomal recessive |
| congenital heart disease | Limited | Autosomal recessive |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| congenital heart disease | Limited | AR |
Mondo (2): cardiac valvular dysplasia 2 (MONDO:0859572), congenital heart disease (MONDO:0005453)
Orphanet (0):
HPO phenotypes
19 total (19 of 19 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000007 | Autosomal recessive inheritance |
| HP:0001642 | Pulmonic stenosis |
| HP:0001647 | Bicuspid aortic valve |
| HP:0001659 | Aortic regurgitation |
| HP:0001682 | Subvalvular aortic stenosis |
| HP:0001962 | Palpitations |
| HP:0003577 | Congenital onset |
| HP:0004927 | Pulmonary artery dilatation |
| HP:0004970 | Ascending tubular aorta aneurysm |
| HP:0005176 | Dysplastic aortic valve |
| HP:0005180 | Tricuspid regurgitation |
| HP:0010444 | Pulmonic regurgitation |
| HP:0011463 | Childhood onset |
| HP:0025168 | Left ventricular diastolic dysfunction |
| HP:0030148 | Heart murmur |
| HP:0031664 | Systolic heart murmur |
| HP:0033755 | Increased left ventricular end-diastolic volume |
| HP:0034032 | Central cyanosis |
| HP:0100749 | Chest pain |
GWAS associations
12 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST001453_3 | Sexual dysfunction (SSRI/SNRI-related) | 1.000000e-06 |
| GCST001762_781 | Obesity-related traits | 9.000000e-06 |
| GCST009723_13 | Vertical cup-disc ratio (adjusted for vertical disc diameter) | 4.000000e-08 |
| GCST010701_92 | Cortical surface area (MOSTest) | 9.000000e-14 |
| GCST010702_112 | Subcortical volume (MOSTest) | 1.000000e-09 |
| GCST010703_249 | Brain morphology (MOSTest) | 2.000000e-14 |
| GCST011616_11 | Cortical volume | 4.000000e-18 |
| GCST012292_11 | Schizophrenia, bipolar disorder or recurrent major depressive disorder x sex interaction | 8.000000e-06 |
| GCST012297_6 | Schizophrenia, bipolar disorder or major depressive disorder | 3.000000e-06 |
| GCST90000025_10 | Appendicular lean mass | 8.000000e-18 |
| GCST90020028_1113 | Hip circumference adjusted for BMI | 8.000000e-10 |
| GCST90020028_1114 | Hip circumference adjusted for BMI | 3.000000e-10 |
EFO canonical traits (8, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004714 | sexual dysfunction |
| EFO:0003939 | energy intake |
| EFO:0006939 | cup-to-disc ratio measurement |
| EFO:0004346 | neuroimaging measurement |
| EFO:0004952 | disease recurrence |
| EFO:0008343 | sex interaction measurement |
| EFO:0004980 | appendicular lean mass |
| EFO:0008039 | BMI-adjusted hip circumference |
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D006330 | Heart Defects, Congenital | C14.240.400; C14.280.400; C16.131.240.400 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
GtoPdb / IUPHAR curated pharmacology
(IUPHAR/BPS Guide to Pharmacology — expert-curated)
Target class: enzyme — M12: Astacin/Adamalysin
CTD chemical–gene interactions
26 total (human), top 26 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects expression, affects cotreatment, increases expression | 5 |
| methylmercuric chloride | decreases expression, increases expression, affects cotreatment | 3 |
| trichostatin A | affects cotreatment, increases expression | 3 |
| Panobinostat | affects cotreatment, increases expression | 2 |
| Aflatoxin B1 | decreases methylation, increases methylation | 2 |
| propionaldehyde | decreases expression | 1 |
| bisphenol A | increases methylation, affects cotreatment | 1 |
| benzo(e)pyrene | decreases methylation | 1 |
| aflatoxin B2 | decreases methylation | 1 |
| pentanal | increases expression | 1 |
| tebuconazole | decreases expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, increases expression | 1 |
| dorsomorphin | affects cotreatment, increases expression | 1 |
| (+)-JQ1 compound | decreases expression | 1 |
| Fulvestrant | affects cotreatment, increases methylation | 1 |
| Vorinostat | increases expression, affects cotreatment | 1 |
| Atrazine | decreases expression | 1 |
| Benzo(a)pyrene | increases methylation, affects methylation | 1 |
| Doxorubicin | increases expression | 1 |
| Estradiol | decreases expression | 1 |
| Hydrogen Peroxide | affects expression | 1 |
| Methapyrilene | decreases methylation | 1 |
| Tretinoin | increases expression | 1 |
| 7,8-Dihydro-7,8-dihydroxybenzo(a)pyrene 9,10-oxide | increases expression | 1 |
| Antirheumatic Agents | increases expression | 1 |
| Cadmium Chloride | increases expression | 1 |
Clinical trials (associated diseases)
300 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00668824 | PHASE4 | UNKNOWN | Improved Diagnosis of Congenital Heart Disease by Magnetic Resonance Imaging Using Vasovist |
| NCT01368705 | PHASE4 | COMPLETED | Nitrogen Balance in Infants After Post Cardiothoracic Surgery |
| NCT01619982 | PHASE4 | COMPLETED | Pre-operative Prophylaxis With Vancomycin and Cefazolin in Pediatric Cardiovascular Surgery Patients |
| NCT02122679 | PHASE4 | WITHDRAWN | Tranexamic Acid Effect on Platelet Aggregation Following Infant Cardiopulmonary Bypass |
| NCT02527811 | PHASE4 | UNKNOWN | Ulinastatin Injection in in Pediatric Patients Undergoing Open Heart Surgery |
| NCT03014700 | PHASE4 | COMPLETED | Fibrinogen Concentrate vs Cryoprecipitate |
| NCT03408340 | PHASE4 | TERMINATED | Paravertebral Nerve Blocks in Neonates |
| NCT03630796 | PHASE4 | UNKNOWN | Effect of Sevoflurane in Postoperative Troponin I Levels in Children Undergoing Congenital Heart Defects Surgery |
| NCT03667703 | PHASE4 | COMPLETED | Stress Ulcer Prophylaxis Versus Placebo in Critically Ill Infants With Congenital Heart Disease |
| NCT04453761 | PHASE4 | UNKNOWN | Thiamine Influenced on Substrate Energy Effectiveness in Indonesian Children Undergoing Cardiopulmonary Bypass |
| NCT06668389 | PHASE4 | RECRUITING | Sodium-Glucose Cotransporter 2 Inhibitors for Repaired Tetralogy of Fallot Patients for Enhancement of Cardio-Pulmonary Status Trial |
| NCT07499154 | PHASE4 | NOT_YET_RECRUITING | Perioperative Lidocaine for Lung Protection in Infants Undergoing Cardiac Surgery |
| NCT00000470 | PHASE3 | COMPLETED | Infant Heart Surgery: Central Nervous System Sequelae of Circulatory Arrest |
| NCT00000494 | PHASE3 | COMPLETED | Management of Patent Ductus in Premature Infants |
| NCT01134302 | PHASE3 | UNKNOWN | Hybrid Versus Norwood Management Strategies in Infants Undergoing Single Ventricle Palliation |
| NCT01607983 | PHASE3 | WITHDRAWN | Effects of Pulmonary Vasodilation Upon VA Coupling in Fontan Patients |
| NCT01662011 | PHASE3 | UNKNOWN | Application of Neurally Adjusted Ventilatory Assist to Children After Congenital Cardiac Surgery |
| NCT02320669 | PHASE3 | COMPLETED | Phase 3 Triiodothyronine Supplementation for Infants After Cardiopulmonary Bypass |
| NCT02615262 | PHASE3 | COMPLETED | Intraoperative Dexamethasone in Pediatric Cardiac Surgery |
| NCT03153137 | PHASE3 | COMPLETED | Clinical Study Assessing the Efficacy and Safety of Macitentan in Fontan-palliated Subjects |
| NCT03154476 | PHASE3 | COMPLETED | Role of Sildenafil for Fontan Associated Liver Disease (SiFALD) Study |
| NCT04536194 | PHASE3 | COMPLETED | Dopamine Versus Norepinephrine Under General Anesthesia |
| NCT04702373 | PHASE3 | ACTIVE_NOT_RECRUITING | Training in Exercise Activities and Motion for Growth (TEAM 4 Growth) RCT |
| NCT05049590 | PHASE3 | COMPLETED | Acute Normovolemic Hemodilution in Complex Cardiac Surgery |
| NCT06406517 | PHASE3 | UNKNOWN | Comparative Effectiveness of Gadopiclenol for Evaluation of Adult Congenital Heart Anatomy and Hemodynamics |
| NCT06693674 | PHASE3 | RECRUITING | Effect of Sacubitril-Valsartan on Cardiac Structure and Function |
| NCT06955260 | PHASE3 | NOT_YET_RECRUITING | SGLT2 Inhibition With Empagliflozin in Fontan Circulatory Failure |
| NCT00115375 | PHASE2 | COMPLETED | Platelet Aggregation Inhibition in Children on Clopidogrel (PICOLO) |
| NCT00350220 | PHASE2 | COMPLETED | Transfusion Strategies in Pediatric Cardiothoracic Surgery |
| NCT00374088 | PHASE2 | COMPLETED | N-Acetylcysteine in Neonatal Congenital Heart Surgery (INACT Study) |
| NCT00538785 | PHASE2 | COMPLETED | A Study to Evaluate MEDI-524 In Children With Hemodynamically Significant Congenital Heart Disease |
| NCT00770705 | PHASE2 | WITHDRAWN | Parenteral Phenoxybenzamine During Congenital Heart Disease Surgery |
| NCT00919945 | PHASE2 | TERMINATED | Impact of Early Enteral Feeding on Splanchnic Blood Flow After Surgery for Critical Heart Disease in the Newborn |
| NCT01063712 | PHASE2 | COMPLETED | Safety and Effectiveness of the Device Nit-Occlud® PDA-R |
| NCT01069510 | PHASE2 | COMPLETED | Spironolactone in Adult Congenital Heart Disease |
| NCT01189981 | PHASE2 | COMPLETED | Effect of eHealth Encouragements to Intensive Exercise in Adolescents With Congenital Heart Disease |
| NCT01330433 | PHASE2 | COMPLETED | Effects of CoSeal on Bleeding & Adhesions in Pediatric Heart Surgery |
| NCT01662037 | PHASE2 | COMPLETED | Bosentan Therapy in Children With Functional Single Ventricle |
| NCT01668264 | PHASE2 | UNKNOWN | Imaging Assessment of Diastolic Function |
| NCT01827059 | PHASE2 | UNKNOWN | Bosentan In Exercise Induced Pulmonary Arterial Hypertension in CongenitaL Heart diseasE |
Related Atlas pages
- Associated diseases: congenital heart disease, cardiac valvular dysplasia 2
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): cardiac valvular dysplasia 2, congenital heart disease