ADAT3
gene geneOn this page
Also known as TAD3
Summary
ADAT3 (adenosine deaminase tRNA specific 3, HGNC:25151) is a protein-coding gene on chromosome 19p13.3, encoding tRNA-specific adenosine-34 deaminase regulatory subunit ADAT3 (Q96EY9). Non-catalytic subunit of the tRNA-specific adenosine-34 deaminase complex, composed of the ADAT2 catalytic subunit and the ADAT3 regulatory subunit, which deaminates adenosine-34 (the first, also called wobble position of the anticodon) to inosine in many tRNAs. It is a selective cancer dependency (DepMap: 38.1% of cell lines).
This gene encodes a subunit of a tRNA-specific adenosine deaminase. This heterodimeric enzyme converts adenosine to inosine in the tRNA anticodon. A mutation in this gene causes a syndrome characterized by intellectual disability and strabismus. This gene shares its 5’ exon with the overlapping gene, secretory carrier membrane protein 4 (Gene ID: 113178).
Source: NCBI Gene 113179 — RefSeq curated summary.
At a glance
- Gene–disease (curated): intellectual disability-strabismus syndrome (Strong, GenCC)
- Clinical variants (ClinVar): 164 total — 1 pathogenic, 3 likely-pathogenic
- Phenotypes (HPO): 78
- Cancer dependency (DepMap): dependent in 38.1% of screened cell lines
- MANE Select transcript:
NM_138422
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:25151 |
| Approved symbol | ADAT3 |
| Name | adenosine deaminase tRNA specific 3 |
| Location | 19p13.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | TAD3 |
| Ensembl gene | ENSG00000213638 |
| Ensembl biotype | protein_coding |
| OMIM | 615302 |
| Entrez | 113179 |
Gene structure
Transcript identifiers
Ensembl transcripts: 4 — 4 protein_coding
ENST00000329478, ENST00000454697, ENST00000942414, ENST00000942415
RefSeq mRNA: 2 — MANE Select: NM_138422
NM_001329533, NM_138422
CCDS: CCDS12076
Canonical transcript exons
ENST00000329478 — 2 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001314256 | 1911890 | 1913447 |
| ENSE00003490367 | 1905399 | 1905439 |
Expression profiles
Bgee: expression breadth ubiquitous, 128 present calls, max score 83.65.
FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.1134 / max 19.7081, expressed in 56 samples.
FANTOM5 promoters (4 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 173012 | 47.5812 | 1820 |
| 173014 | 0.0463 | 17 |
| 173015 | 0.0448 | 23 |
| 173013 | 0.0223 | 7 |
Top tissues by expression
131 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| mucosa of transverse colon | UBERON:0004991 | 83.65 | gold quality |
| lower esophagus mucosa | UBERON:0035834 | 82.77 | gold quality |
| skin of abdomen | UBERON:0001416 | 79.38 | gold quality |
| skin of leg | UBERON:0001511 | 78.91 | gold quality |
| zone of skin | UBERON:0000014 | 78.79 | gold quality |
| esophagus mucosa | UBERON:0002469 | 77.98 | gold quality |
| C1 segment of cervical spinal cord | UBERON:0006469 | 77.50 | gold quality |
| metanephros cortex | UBERON:0010533 | 76.95 | gold quality |
| transverse colon | UBERON:0001157 | 76.65 | gold quality |
| duodenum | UBERON:0002114 | 76.65 | gold quality |
| granulocyte | CL:0000094 | 75.26 | gold quality |
| minor salivary gland | UBERON:0001830 | 75.12 | gold quality |
| saliva-secreting gland | UBERON:0001044 | 74.74 | gold quality |
| cortex of kidney | UBERON:0001225 | 74.65 | gold quality |
| small intestine Peyer’s patch | UBERON:0003454 | 73.19 | gold quality |
| small intestine | UBERON:0002108 | 72.92 | gold quality |
| body of stomach | UBERON:0001161 | 72.82 | gold quality |
| olfactory segment of nasal mucosa | UBERON:0005386 | 72.62 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 72.54 | gold quality |
| left adrenal gland | UBERON:0001234 | 72.53 | gold quality |
| esophagus | UBERON:0001043 | 72.52 | gold quality |
| blood | UBERON:0000178 | 72.51 | gold quality |
| spleen | UBERON:0002106 | 72.48 | gold quality |
| adult mammalian kidney | UBERON:0000082 | 72.44 | gold quality |
| right adrenal gland | UBERON:0001233 | 72.35 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 72.23 | gold quality |
| left adrenal gland cortex | UBERON:0035825 | 72.21 | gold quality |
| right uterine tube | UBERON:0001302 | 72.20 | gold quality |
| colon | UBERON:0001155 | 72.09 | gold quality |
| intestine | UBERON:0000160 | 71.28 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 0.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | no | 1.96 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
8 targeting ADAT3, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-345-3P | 99.89 | 70.23 | 1421 |
| HSA-MIR-4675 | 97.69 | 64.82 | 774 |
| HSA-MIR-4741 | 97.69 | 64.14 | 883 |
| HSA-MIR-3620-5P | 97.42 | 63.95 | 792 |
| HSA-MIR-1587 | 96.95 | 64.03 | 932 |
| HSA-MIR-874-5P | 96.93 | 63.92 | 1014 |
| HSA-MIR-3657 | 96.33 | 66.29 | 608 |
| HSA-MIR-147B-3P | 94.55 | 64.40 | 94 |
Functional genomics
DepMap (CRISPR cell-line fitness): dependent in 38.1% of screened cell lines.
Literature-anchored findings (GeneRIF, showing 6)
- A single missense mutation was identified in ADAT3 in all studied families on an ancient ancestral haplotype. (PMID:23620220)
- ADAT3-related intellectual disability is an important recognizable cause of intellectual disability in Arabia (PMID:26842963)
- We conclude that the ADAT3 gene mutation is responsible for ADAT3-related intellectual disability syndrome, which induces the variety clinical manifestations exhibited by our patients. (PMID:30296593)
- Study demonstrates that cells isolated from intellectual disability patients with homozygous for the ADAT3-V144M mutation contain diminished levels of wobble inosine in several tRNA isoacceptors. V144M mutation compromises the adenosine deaminase activity of ADAT2/3 complexes, increases the propensity of ADAT3 to oligomerize, and alters the subcellular localization properties of ADAT3. (PMID:31263000)
- Identification and rescue of a tRNA wobble inosine deficiency causing intellectual disability disorder. (PMID:32763916)
- Genetic diagnosis in Sudanese and Tunisian families with syndromic intellectual disability through exome sequencing. (PMID:35118659)
Cross-species orthologs
6 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | adat3 | ENSDARG00000005640 |
| mus_musculus | Gm49322 | ENSMUSG00000035370 |
| mus_musculus | Adat3 | ENSMUSG00000113640 |
| rattus_norvegicus | Adat3 | ENSRNOG00000063591 |
| drosophila_melanogaster | CG10927 | FBGN0034360 |
| caenorhabditis_elegans | WBGENE00012927 |
Paralogs (1): ADAT2 (ENSG00000189007)
Protein
Protein identifiers
tRNA-specific adenosine-34 deaminase regulatory subunit ADAT3 — Q96EY9 (reviewed: Q96EY9)
All UniProt accessions (2): C9JFC1, D6W601
UniProt curated annotations — full annotation on UniProt →
Function. Non-catalytic subunit of the tRNA-specific adenosine-34 deaminase complex, composed of the ADAT2 catalytic subunit and the ADAT3 regulatory subunit, which deaminates adenosine-34 (the first, also called wobble position of the anticodon) to inosine in many tRNAs. Inosine-34 allows the decoding of 3 different nucleotides at the third position of mRNA codons, as inosine is able to pair with U, C, and A. Required for binding of the ADAT2-ADAT3 complex to tRNA through its N-terminus, which rotates with respect to the catalytic domain of the complex, formed by ADAT2 and the ADAT3 C-terminal domain, to position the tRNA anticodon stem-loop correctly in the ADAT2 active site. The ADAT2-ADAT3 complex is required for radial migration of projection neurons in the developing brain cortex, and the catalytic activity of the complex is necessary for this function.
Subunit / interactions. Heterodimer with catalytic subunit ADAT2 to form the tRNA-specific adenosine-34 deaminase complex.
Subcellular location. Nucleus. Cytoplasm.
Disease relevance. Neurodevelopmental disorder with brain abnormalities, poor growth, and dysmorphic facies (NEDBGF) [MIM:615286] An autosomal recessive disorder characterized by global developmental delay, impaired intellectual development, and speech delay apparent from infancy or early childhood. Most patients have dysmorphic facial features, and white matter abnormalities on brain imaging. More variable features may include teeth anomalies, distal joint contractures, spasticity, peripheral neuropathy, and behavioral problems. The disease is caused by variants affecting the gene represented in this entry.
Domain organisation. The N-terminal domain adopts a fold that shares similarity with the ferredoxin-like domains of other tRNA-modifying enzymes and is required for tRNA-binding and deamination activity of the ADAT2-ADAT3 heterodimer. The domain can rotate with respect to the catalytic domain formed by ADAT2 and the ADAT3 C-terminal domain without affecting the structure of the catalytic domain. Rotation positions the tRNA anticodon stem-loop correctly in the ADAT2 active site.
Similarity. Belongs to the cytidine and deoxycytidylate deaminase family. ADAT3 subfamily.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q96EY9-1 | 1 | yes |
| Q96EY9-2 | 2 |
RefSeq proteins (2): NP_001316462, NP_612431* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR002125 | CMP_dCMP_dom | Domain |
| IPR016193 | Cytidine_deaminase-like | Homologous_superfamily |
Pfam: PF00383
UniProt features (11 total): binding site 4, sequence variant 2, chain 1, domain 1, modified residue 1, region of interest 1, splice variant 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q96EY9-F1 | 88.83 | 0.78 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Ligand- & substrate-binding residues (4): 239; 307; 310; 366
Post-translational modifications (1): 1
Function
Pathways and Gene Ontology
Reactome pathways
1 pathways
| ID | Pathway |
|---|---|
| R-HSA-6782315 | tRNA modification in the nucleus and cytosol |
MSigDB gene sets: 218 (showing top):
GOBP_TRNA_METABOLIC_PROCESS, CYTAGCAAY_UNKNOWN, MODULE_95, ACEVEDO_METHYLATED_IN_LIVER_CANCER_DN, GOBP_TRNA_PROCESSING, REACTOME_METABOLISM_OF_RNA, TCCCRNNRTGC_UNKNOWN, chr19p13, MODULE_49, MODULE_163, REACTOME_TRNA_MODIFICATION_IN_THE_NUCLEUS_AND_CYTOSOL, REACTOME_TRNA_PROCESSING, ARID5B_TARGET_GENES, GREB1_TARGET_GENES, HOXB4_TARGET_GENES
GO Biological Process (1): tRNA processing (GO:0008033)
GO Molecular Function (2): catalytic activity (GO:0003824), metal ion binding (GO:0046872)
GO Cellular Component (3): nucleus (GO:0005634), nucleoplasm (GO:0005654), cytoplasm (GO:0005737)
Reactome top-level categories
Rollup of top-1 pathways:
| Category | Pathways |
|---|---|
| tRNA processing | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 2 |
| RNA processing | 1 |
| tRNA metabolic process | 1 |
| molecular_function | 1 |
| cation binding | 1 |
| intracellular membrane-bounded organelle | 1 |
| nuclear lumen | 1 |
| intracellular anatomical structure | 1 |
Protein interactions and networks
STRING
1250 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| ADAT3 | ADAT2 | Q7Z6V5 | 999 |
| ADAT3 | ADAT1 | Q9BUB4 | 953 |
| ADAT3 | WDR4 | P57081 | 734 |
| ADAT3 | FTSJ1 | Q9UET6 | 716 |
| ADAT3 | ADAR | P55265 | 707 |
| ADAT3 | TRMT5 | Q32P41 | 680 |
| ADAT3 | TRMT6 | Q9UJA5 | 645 |
| ADAT3 | TRMT61A | Q96FX7 | 626 |
| ADAT3 | NSUN2 | Q08J23 | 624 |
| ADAT3 | ALKBH8 | Q96BT7 | 620 |
| ADAT3 | TRMT10A | Q8TBZ6 | 609 |
| ADAT3 | KARS1 | Q15046 | 605 |
| ADAT3 | ADARB2 | Q9NS39 | 604 |
| ADAT3 | PUS3 | Q9BZE2 | 597 |
| ADAT3 | AARS1 | P49588 | 594 |
IntAct
23 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| ANKRD44 | PPP6C | psi-mi:“MI:0914”(association) | 0.790 |
| CDA | ADAT3 | psi-mi:“MI:0915”(physical association) | 0.560 |
| FBLIM1 | ADAT3 | psi-mi:“MI:0915”(physical association) | 0.560 |
| SORBS3 | ADAT3 | psi-mi:“MI:0915”(physical association) | 0.560 |
| TRIP13 | INTS11 | psi-mi:“MI:0914”(association) | 0.550 |
| SAP30 | TNRC18 | psi-mi:“MI:0914”(association) | 0.530 |
| ADAT2 | ADAT3 | psi-mi:“MI:0915”(physical association) | 0.500 |
| ADAT2 | ADAT3 | psi-mi:“MI:0915”(physical association) | 0.400 |
| THRB | ADAT3 | psi-mi:“MI:0915”(physical association) | 0.370 |
| TRIP13 | METTL8 | psi-mi:“MI:0914”(association) | 0.350 |
| ADAT3 | ABLIM1 | psi-mi:“MI:0914”(association) | 0.350 |
| ARMC12 | PTPRG | psi-mi:“MI:0914”(association) | 0.350 |
| TOM1 | VPS37C | psi-mi:“MI:0914”(association) | 0.350 |
| TLDC2 | ATP6V1A | psi-mi:“MI:0914”(association) | 0.350 |
| HMGN1 | IPO7 | psi-mi:“MI:0914”(association) | 0.350 |
| ADAT3 | CDA | psi-mi:“MI:0915”(physical association) | 0.000 |
| ADAT3 | SORBS3 | psi-mi:“MI:0915”(physical association) | 0.000 |
| ADAT3 | FBLIM1 | psi-mi:“MI:0915”(physical association) | 0.000 |
BioGRID (29): ADAT3 (Affinity Capture-MS), ADAT3 (Affinity Capture-MS), ADAT3 (Affinity Capture-MS), ADAT3 (Two-hybrid), ADAT3 (Two-hybrid), ADAT3 (Two-hybrid), ADAT3 (Affinity Capture-RNA), ADAT3 (Affinity Capture-MS), SELO (Affinity Capture-MS), ABLIM1 (Affinity Capture-MS), ADAT3 (Affinity Capture-MS), POTEI (Affinity Capture-MS), MED29 (Affinity Capture-MS), TBC1D24 (Affinity Capture-MS), ADAT3 (Affinity Capture-MS)
ESM2 similar proteins: A1A4L8, A2BDX3, A4RPM5, A5GFZ6, A6NK58, B4FAT0, B4NXF7, B6TNK6, O19179, O43323, O95396, O95571, P19971, P55203, P85971, Q02846, Q05922, Q08DH8, Q0VFH3, Q14BV6, Q17CA7, Q1WNP0, Q3KQV9, Q3TW96, Q3UQ84, Q561R2, Q58E95, Q5PQQ1, Q5ZKI2, Q61488, Q66JK4, Q6PAT0, Q7PY41, Q86U10, Q8AWD2, Q8NFV4, Q8VBZ0, Q8VDG5, Q923K4, Q96EY9
Diamond homologs: A9CK16, C1D1Q9, F4KH86, O34598, O66534, O67050, O94642, P0DA20, P0DA21, P21335, P44931, P57343, P68397, P68398, P68999, Q1RGK7, Q4UJW9, Q561R2, Q5E9J7, Q5SI38, Q5XE14, Q68Y02, Q6IDB6, Q6P6J0, Q6PAT0, Q72IF6, Q7CQ08, Q7Z6V5, Q89AM8, Q8FF24, Q8JFW4, Q8K9R4, Q8P2R7, Q8XA44, Q8XGY4, Q92G39, Q94BU8, Q96EY9, Q99W51, Q9RV23
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
164 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 1 |
| Likely pathogenic | 3 |
| Uncertain significance | 127 |
| Likely benign | 18 |
| Benign | 6 |
Top pathogenic / likely-pathogenic (4)
| Variant ID | HGVS | Classification |
|---|---|---|
| 549839 | NM_138422.4(ADAT3):c.99_106dup (p.Glu36fs) | Pathogenic |
| 1331555 | NM_138422.4(ADAT3):c.24_37del (p.Pro10fs) | Likely pathogenic |
| 3362399 | NM_138422.4(ADAT3):c.319G>A (p.Glu107Lys) | Likely pathogenic |
| 3362604 | NM_138422.4(ADAT3):c.159_160del (p.Asp55fs) | Likely pathogenic |
SpliceAI
388 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 19:1905437:CAGG:C | donor_loss | 1.0000 |
| 19:1905438:AGG:A | donor_loss | 1.0000 |
| 19:1905438:AGGT:A | donor_loss | 1.0000 |
| 19:1905440:G:GA | donor_loss | 1.0000 |
| 19:1905440:G:GG | donor_gain | 0.9900 |
| 19:1912079:A:AG | acceptor_gain | 0.9800 |
| 19:1912079:AGTC:A | acceptor_gain | 0.9800 |
| 19:1912079:AGTCG:A | acceptor_gain | 0.9800 |
| 19:1912080:G:GG | acceptor_gain | 0.9800 |
| 19:1912080:GTC:G | acceptor_gain | 0.9800 |
| 19:1912080:GTCG:G | acceptor_gain | 0.9800 |
| 19:1912080:GTCGG:G | acceptor_gain | 0.9800 |
| 19:1905435:CTCAG:C | donor_gain | 0.9700 |
| 19:1905438:AG:A | donor_gain | 0.9700 |
| 19:1905439:GG:G | donor_gain | 0.9700 |
| 19:1912279:G:GT | donor_gain | 0.9700 |
| 19:1913259:G:T | donor_gain | 0.9600 |
| 19:1905436:TCAG:T | donor_gain | 0.9500 |
| 19:1905437:CAG:C | donor_gain | 0.9500 |
| 19:1912075:CCACA:C | acceptor_loss | 0.9400 |
| 19:1912076:CACA:C | acceptor_loss | 0.9400 |
| 19:1912077:ACAG:A | acceptor_loss | 0.9400 |
| 19:1912078:CA:C | acceptor_loss | 0.9400 |
| 19:1912079:AG:A | acceptor_loss | 0.9400 |
| 19:1912080:G:A | acceptor_loss | 0.9400 |
| 19:1912080:GT:G | acceptor_gain | 0.9400 |
| 19:1913148:G:GG | donor_gain | 0.9400 |
| 19:1912069:T:A | acceptor_loss | 0.9200 |
| 19:1913280:G:GT | donor_gain | 0.9100 |
| 19:1913329:C:A | donor_gain | 0.9100 |
AlphaMissense
2328 scored. Top likely-pathogenic:
dbSNP variants (sampled 300 via entrez): RS1000061983 (19:1905920 A>G), RS1000485286 (19:1912694 T>C,G), RS1000547425 (19:1911345 G>T), RS1000664280 (19:1905257 G>A,T), RS1000665052 (19:1911552 G>A,T), RS1001178243 (19:1907204 C>T), RS1001439717 (19:1912085 C>A,T), RS1001682483 (19:1908017 C>G,T), RS1001894702 (19:1907512 G>A), RS1002285927 (19:1911728 A>G,T), RS1002290216 (19:1907281 C>G,T), RS1002673556 (19:1909528 T>A), RS1002729302 (19:1907161 T>G), RS1002952479 (19:1913614 C>T), RS1003172253 (19:1910211 G>C,T)
Disease associations
OMIM: gene MIM:615302 | disease phenotypes: MIM:615286
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| intellectual disability-strabismus syndrome | Strong | Autosomal recessive |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| intellectual disability-strabismus syndrome | Moderate | AR |
Mondo (3): intellectual disability-strabismus syndrome (MONDO:0014119), microcephaly (MONDO:0001149), intellectual disability (MONDO:0001071)
Orphanet (2): Intellectual disability-strabismus syndrome (Orphanet:363528), NON RARE IN EUROPE: Unexplained intellectual disability (Orphanet:319658)
HPO phenotypes
78 total (30 of 78 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000028 | Cryptorchidism |
| HP:0000047 | Hypospadias |
| HP:0000054 | Micropenis |
| HP:0000154 | Wide mouth |
| HP:0000164 | Abnormality of the dentition |
| HP:0000218 | High palate |
| HP:0000252 | Microcephaly |
| HP:0000276 | Long face |
| HP:0000286 | Epicanthus |
| HP:0000316 | Hypertelorism |
| HP:0000324 | Facial asymmetry |
| HP:0000340 | Sloping forehead |
| HP:0000347 | Micrognathia |
| HP:0000348 | High forehead |
| HP:0000365 | Hearing impairment |
| HP:0000369 | Low-set ears |
| HP:0000400 | Macrotia |
| HP:0000403 | Recurrent otitis media |
| HP:0000418 | Narrow nasal ridge |
| HP:0000448 | Prominent nose |
| HP:0000470 | Short neck |
| HP:0000486 | Strabismus |
| HP:0000506 | Telecanthus |
| HP:0000565 | Esotropia |
| HP:0000582 | Upslanted palpebral fissure |
| HP:0000664 | Synophrys |
| HP:0000718 | Aggressive behavior |
| HP:0000750 | Delayed speech and language development |
| HP:0000752 | Hyperactivity |
GWAS associations
0 associations (top):
MeSH disease descriptors (2)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D008607 | Intellectual Disability | C10.597.606.360; C23.888.592.604.646; F01.700.687; F03.625.539 |
| D008831 | Microcephaly | C05.660.207.620; C10.500.507.400.500; C16.131.621.207.620; C16.131.666.507.400.500 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
25 total (human), top 25 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Smoke | increases expression, decreases expression, increases abundance | 2 |
| Tobacco Smoke Pollution | increases expression | 2 |
| aristolochic acid I | increases expression | 1 |
| beta-lapachone | decreases expression | 1 |
| sodium arsenite | decreases expression | 1 |
| 4-aminophenylarsenoxide | affects binding, decreases reaction | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| ICG 001 | decreases expression | 1 |
| licochalcone B | increases expression | 1 |
| Resveratrol | affects cotreatment, decreases expression | 1 |
| Sunitinib | increases expression | 1 |
| Arsenic Trioxide | affects binding, decreases reaction | 1 |
| Acetaminophen | increases expression | 1 |
| Air Pollutants | increases expression, increases abundance | 1 |
| Benzo(a)pyrene | decreases methylation | 1 |
| Dichlorodiphenyl Dichloroethylene | decreases expression | 1 |
| Methotrexate | decreases expression | 1 |
| Plant Extracts | affects cotreatment, decreases expression | 1 |
| Rotenone | decreases expression | 1 |
| Toluene | decreases expression, increases methylation | 1 |
| Urethane | increases expression | 1 |
| Valproic Acid | increases methylation | 1 |
| Sodium Selenite | increases expression | 1 |
| Copper Sulfate | increases expression | 1 |
| Particulate Matter | decreases expression | 1 |
Cellosaurus cell lines
1 cell lines: 1 induced pluripotent stem cell
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_B7E1 | FMUPDCi001-A | Induced pluripotent stem cell | Female |
Clinical trials (associated diseases)
211 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT05657860 | PHASE4 | COMPLETED | Guanfacine Extended Release for the Reduction of Aggression and Self-injurious Behavior Associated With Prader-Willi Syndrome |
| NCT05744479 | PHASE4 | RECRUITING | Metformin for Antipsychotic-induced Weight Gain in Adults With Intellectual Disability |
| NCT06107829 | PHASE4 | WITHDRAWN | Valbenazine Treatment of Tardive Dyskinesia in Adults With Intellectual/Developmental Disabilities |
| NCT06997198 | PHASE4 | NOT_YET_RECRUITING | Deutetrabenazine Treatment for Tardive Dyskinesia in Intellectual/Developmental Disabilities |
| NCT02270736 | PHASE3 | COMPLETED | Clinical Study to Investigate the Efficacy and Safety of NT 201 Compared to Placebo in the Treatment of Chronic Troublesome Drooling Associated With Neurological Disorders and/or Intellectual Disability |
| NCT02304302 | PHASE2 | COMPLETED | Down Syndrome Memantine Follow-up Study |
| NCT03862950 | PHASE2 | COMPLETED | A Trial of Metformin in Individuals With Fragile X Syndrome (Met) |
| NCT04529226 | PHASE2 | UNKNOWN | Study to Compare Clozapine vs Treatment as Usual in People With Intellectual Disability & Treatment-resistant Psychosis |
| NCT04821856 | PHASE2 | COMPLETED | Evaluation of the Effectiveness of Cannabidiol in Treating Severe Behavioural Problems in Children and Adolescents With Intellectual Disability |
| NCT05273320 | PHASE1 | COMPLETED | Clinical Trial of Nabilone for Aggression in Adults With Intellectual and Developmental Disabilities |
| NCT05301361 | PHASE1 | ENROLLING_BY_INVITATION | Sensitivity of the NIH Toolbox to Stimulant Treatment in Intellectual Disabilities |
| NCT06016764 | PHASE1 | COMPLETED | Use of MRI and cTBS for Catatonia in Autism |
| NCT06586827 | PHASE1 | COMPLETED | Impact of Competency-Based Training and Technical Assistance Employment Outcomes of Individuals With ID/DD |
| NCT07531940 | PHASE1 | NOT_YET_RECRUITING | Escalating Doses of Memantine in Down Syndrome (MEDS-123) |
| NCT05518188 | PHASE1/PHASE2 | RECRUITING | Melpida: Recombinant Adeno-associated Virus (serotype 9) Encoding a Codon Optimized Human AP4M1 Transgene (hAP4M1opt) |
| NCT00001639 | Not specified | COMPLETED | Evaluation of Patients With Unresolved Chromosome Abnormalities |
| NCT01151462 | Not specified | WITHDRAWN | Postnatal HCMV Infection in Very Preterm Infants. Implications, Morbidity, Growth and Neurodevelopmental Outcomes. |
| NCT01565005 | Not specified | COMPLETED | Microcephaly Genetic Deficiency in Neural Progenitors |
| NCT02510170 | Not specified | COMPLETED | Fetal and Maternal Head Circumference During Pregnancy in Israeli Population |
| NCT02741882 | Not specified | COMPLETED | Zika and Microcephaly: Case-control Study |
| NCT02943304 | Not specified | COMPLETED | Neurodevelopment Outcome of Newborns Exposed to Zika Virus (ZIKV) in Utero |
| NCT03255369 | Not specified | UNKNOWN | Vertical Exposure to Zika Virus and Its Consequences for Child Neurodevelopment (ZIKVIRUSIFF) |
| NCT03325946 | Not specified | RECRUITING | The FBRI VTC Neuromotor Research Clinic |
| NCT03330600 | Not specified | COMPLETED | Efficacy of Aquatic Physiotherapy in Children With Microcephaly by Zika Virus Congenital Syndrome |
| NCT03548779 | Not specified | COMPLETED | North Carolina Genomic Evaluation by Next-generation Exome Sequencing, 2 |
| NCT03651687 | Not specified | COMPLETED | Guangzhou Surveillance and Clinical Study in Microcephaly (GSCSM) |
| NCT03922594 | Not specified | TERMINATED | Surveillance of Zika-related Microcephaly in Sub-Saharan Africa and Asia |
| NCT04816175 | Not specified | COMPLETED | Intensive Therapy for Children With Microcephaly, Hyperkinetic Movements, or Global Developmental Delay |
| NCT05322980 | Not specified | COMPLETED | Summary of Infants Weighing 500 Grams or Less |
| NCT06019182 | Not specified | RECRUITING | MEHMO Natural History and Biomarkers |
| NCT06566066 | Not specified | RECRUITING | Register for Patients With Thyroid Hormone Resistance. |
| NCT03479476 | PHASE2/PHASE3 | COMPLETED | A Trial of Metformin in Individuals With Fragile X Syndrome |
| NCT02616796 | PHASE1/PHASE2 | COMPLETED | Effects of Social Gaze Training on Brain and Behavior in Fragile X Syndrome |
| NCT06860672 | EARLY_PHASE1 | RECRUITING | Clinical Trial of the Dual Vector Base Editor for the Treatment of the CHD3-R1025W Mutation |
| NCT00597948 | Not specified | COMPLETED | Healthy Lifestyles for People With Intellectual Disabilities |
| NCT01087320 | Not specified | RECRUITING | Genome Medical Sequencing for Gene Discovery |
| NCT01652963 | Not specified | UNKNOWN | Picture-based Computerised Assessment and Training of Cognitive Behaviour Therapy Skills |
| NCT01695395 | Not specified | COMPLETED | Mental Health Care Provision for Adults With Intellectual Disability and a Mental Disorder |
| NCT01867554 | Not specified | COMPLETED | Research and Characterization of New Genes Involved in Intellectual Disability |
| NCT01915381 | Not specified | COMPLETED | Improving Adherence Healthy Lifestyle With a Smartphone Application Based on Adults With Intellectual Disabilities |
Related Atlas pages
- Associated diseases: intellectual disability-strabismus syndrome
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): intellectual disability-strabismus syndrome