ADCY7

gene
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Also known as KIAA0037AC7

Summary

ADCY7 (adenylate cyclase 7, HGNC:238) is a protein-coding gene on chromosome 16q12.1, encoding Adenylate cyclase type 7 (P51828). Adenylate cyclase that mediates formation of both cyclic AMP (cAMP) and cyclic di-AMP (c-di-AMP).

This gene encodes a membrane-bound adenylate cyclase that catalyses the formation of cyclic AMP from ATP and is inhibitable by calcium. The product of this gene is a member of the adenylyl cyclase class-4/guanylyl cyclase enzyme family that is characterized by the presence of twelve membrane-spanning domains in its sequences. Several transcript variants have been observed for this gene, but the full-length natures of only two have been determined so far.

Source: NCBI Gene 113 — RefSeq curated summary.

At a glance

  • GWAS associations: 8
  • Clinical variants (ClinVar): 176 total — 2 pathogenic
  • Druggable target: yes
  • MANE Select transcript: NM_001114

Identifiers

Gene identifiers

FieldValue
HGNC IDHGNC:238
Approved symbolADCY7
Nameadenylate cyclase 7
Location16q12.1
Locus typegene with protein product
StatusApproved
AliasesKIAA0037, AC7
Ensembl geneENSG00000121281
Ensembl biotypeprotein_coding
OMIM600385
Entrez113

Gene structure

Transcript identifiers

Ensembl transcripts: 16 — 9 protein_coding, 3 protein_coding_CDS_not_defined, 2 nonsense_mediated_decay, 2 retained_intron

ENST00000254235, ENST00000394697, ENST00000537579, ENST00000563677, ENST00000564044, ENST00000564965, ENST00000566433, ENST00000566761, ENST00000567277, ENST00000568731, ENST00000568930, ENST00000568933, ENST00000569265, ENST00000570187, ENST00000673801, ENST00000673973

RefSeq mRNA: 2 — MANE Select: NM_001114 NM_001114, NM_001286057

CCDS: CCDS10741, CCDS73882

Canonical transcript exons

ENST00000673801 — 26 exons

ExonStartEnd
ENSE000008214625031395850314062
ENSE000008214655031169350311786
ENSE000008214665031068750310880
ENSE000008214765030071550300873
ENSE000009016995029890450299031
ENSE000009017055030436050304551
ENSE000009017195031203650312191
ENSE000009017215031289050313036
ENSE000011419045029173650291897
ENSE000011419125029045750290660
ENSE000015192645031535950318135
ENSE000025902165026655150266680
ENSE000026666455028791250288350
ENSE000034610745030705050307147
ENSE000034674135029464050294751
ENSE000034699965031429250314406
ENSE000035055035030866750308792
ENSE000035256685031501450315138
ENSE000035348905030550350305586
ENSE000035424435030108250301214
ENSE000035837245030492550304959
ENSE000035931065030577750305849
ENSE000036044565029267650292825
ENSE000036247205030954850309646
ENSE000036696515029335450293502
ENSE000036714055030832750308411

Expression profiles

Bgee: expression breadth ubiquitous, 271 present calls, max score 97.09.

FANTOM5 (CAGE): breadth ubiquitous, TPM avg 14.2541 / max 254.4711, expressed in 1515 samples.

FANTOM5 promoters (8 alternative TSS)

Promoter IDTPM avgSamples expressed
1539907.01731179
1539923.5256453
1539892.77911123
1539950.5393153
1539930.169070
1539960.104239
1539940.082631
1539970.037029

Top tissues by expression

295 total, by Bgee expression score (0-100, higher = more expressed):

TissueAnatomy IDExpression scoreQuality
granulocyteCL:000009497.09gold quality
monocyteCL:000057696.43gold quality
mononuclear cellCL:000084296.36gold quality
leukocyteCL:000073896.30gold quality
bloodUBERON:000017893.41gold quality
vermiform appendixUBERON:000115491.03gold quality
secondary oocyteCL:000065590.72gold quality
lymph nodeUBERON:000002990.17gold quality
bone marrow cellCL:000209289.52gold quality
spleenUBERON:000210689.51gold quality
skin of hipUBERON:000155489.01gold quality
bone marrowUBERON:000237187.67gold quality
gall bladderUBERON:000211087.04gold quality
caecumUBERON:000115386.45gold quality
upper leg skinUBERON:000426286.44gold quality
placentaUBERON:000198786.33gold quality
upper lobe of left lungUBERON:000895286.30gold quality
trabecular bone tissueUBERON:000248386.14gold quality
upper lobe of lungUBERON:000894885.96gold quality
epithelium of nasopharynxUBERON:000195185.10gold quality
nasopharynxUBERON:000172885.08gold quality
left ovaryUBERON:000211984.95gold quality
oocyteCL:000002384.89gold quality
right ovaryUBERON:000211884.51gold quality
synovial jointUBERON:000221784.39gold quality
ovaryUBERON:000099284.29gold quality
lungUBERON:000204884.21gold quality
esophagus mucosaUBERON:000246983.78gold quality
esophagus squamous epitheliumUBERON:000692083.55gold quality
tonsilUBERON:000237283.35gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

ExperimentMarker?Max mean expression
E-ANND-3yes3.30

Regulation

Is transcription factor: no

miRNA regulators (miRDB)

106 targeting ADCY7, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):

miRNAMax scoreAvg scoremiRNA target_count
HSA-MIR-3163100.0077.238605
HSA-MIR-4747-5P100.0067.902681
HSA-MIR-340-5P100.0072.504437
HSA-MIR-3646100.0073.565283
HSA-MIR-126-5P100.0072.713180
HSA-MIR-223-3P99.9970.141140
HSA-MIR-806899.9873.852376
HSA-MIR-569699.9872.364487
HSA-MIR-1213699.9872.815713
HSA-MIR-19A-3P99.9875.332762
HSA-MIR-19B-3P99.9875.442754
HSA-MIR-4789-5P99.9870.762721
HSA-LET-7F-2-3P99.9870.982588
HSA-MIR-1185-1-3P99.9871.042593
HSA-MIR-1185-2-3P99.9871.042593
HSA-MIR-548N99.9871.944170
HSA-MIR-548AN99.9770.912817
HSA-MIR-548AJ-3P99.9673.385345
HSA-MIR-548X-3P99.9673.385345
HSA-MIR-548J-3P99.9472.614881
HSA-MIR-548AE-3P99.9372.664867
HSA-MIR-548AH-3P99.9372.544872
HSA-MIR-548AM-3P99.9372.544872
HSA-MIR-548AQ-3P99.9372.664867
HSA-MIR-539-5P99.9370.302855
HSA-MIR-130599.9171.433443
HSA-MIR-4697-3P99.8967.091123
HSA-MIR-30A-3P99.8769.742928
HSA-MIR-30D-3P99.8769.922917
HSA-MIR-30E-3P99.8769.682942

Literature-anchored findings (GeneRIF, showing 13)

  • construction of soluble adenylyl cyclase from human membrane-bound type 7 adenylyl cyclase (PMID:11665607)
  • The first cytoplasmic domain (residues 506-584) of adenylyl cyclase (AC) type VII is an internal regulatory subunit, interacting with a cardinal activator of AC (Gs alpha) and with the conserved first catalytic domain of type VII AC. (PMID:15581358)
  • Brain type VII adenylyl cyclase isoform plays a sex-specific role in the manifestation of a heritable form of depressive symptoms in genetically modified mice. (PMID:17135423)
  • AC7 is a specific downstream effector of the G(12/13) pathway (PMID:18541530)
  • soluble adenylyl cyclase is responsive to both CO(2) and bicarbonate ion (PMID:19008230)
  • we found that single nucleotide polymorphisms in ADCY7 associate with alcohol dependence in women, and these markers are also associated with ADCY7 expression (messenger RNA) levels. (PMID:21481845)
  • evidence implicates ADCY7 in the modulation of mood regulatory neural mechanisms and, possibly, risk for and pathophysiology of depression. (PMID:22264442)
  • The stronger TNF-alpha responses in young males compared to females may be partly associated with male-specific down-regulation of ADCY7 and ADCY9. (PMID:25959651)
  • The ADCY7 deficiency resulted in decreased cell growth, elevated apoptosis, and lower c-Myc expression in cultured leukemia cells obtained from acute myeloid leukemia patients. (PMID:26220344)
  • We discovered a 0.6% frequency missense variant in ADCY7. (PMID:28067910)
  • AC7 and miR-192 might be new biomarkers and therapeutic targets for patients with relapsed acute promyelocytic leukemia. (PMID:30366671)
  • Hsa_circ_0008234 facilitates proliferation of cutaneous squamous cell carcinoma through targeting miR-127-5p to regulate ADCY7. (PMID:34143288)
  • CRISPR/Cas9 ADCY7 Knockout Stimulates the Insulin Secretion Pathway Leading to Excessive Insulin Secretion. (PMID:34177802)

Cross-species orthologs

3 orthologs

OrganismSymbolGene ID
danio_rerioadcy7ENSDARG00000060070
mus_musculusAdcy7ENSMUSG00000031659
rattus_norvegicusAdcy7ENSRNOG00000014776

Paralogs (17): GUCY1B1 (ENSG00000061918), GUCY2C (ENSG00000070019), ADCY2 (ENSG00000078295), GUCY2F (ENSG00000101890), NPR3 (ENSG00000113389), ADCY4 (ENSG00000129467), GUCY2D (ENSG00000132518), ADCY3 (ENSG00000138031), GUCY1A2 (ENSG00000152402), ADCY8 (ENSG00000155897), NPR2 (ENSG00000159899), ADCY9 (ENSG00000162104), GUCY1A1 (ENSG00000164116), ADCY1 (ENSG00000164742), NPR1 (ENSG00000169418), ADCY5 (ENSG00000173175), ADCY6 (ENSG00000174233)

Protein

Protein identifiers

Adenylate cyclase type 7P51828 (reviewed: P51828)

Alternative names: ATP pyrophosphate-lyase 7, Adenylate cyclase type VII, Adenylyl cyclase 7, Cyclic di-AMP synthase ADCY7

All UniProt accessions (8): A0A669KBF7, F5H4D1, F5H699, H3BMA5, H3BQ93, I3L2Y1, I3L3Q5, P51828

UniProt curated annotations — full annotation on UniProt →

Function. Adenylate cyclase that mediates formation of both cyclic AMP (cAMP) and cyclic di-AMP (c-di-AMP). Acts as a key mediator of G protein-coupled receptor signaling by catalyzing the formation of cAMP downstream of G protein-coupled receptors. Functions in G protein-coupled receptor signaling cascades activated by thrombin, sphingosine 1-phosphate, dopamine and anaphylatoxin C5a. Mediates regulation of cAMP synthesis through synergistic action of the G alpha protein G(s) (GNAS) with G(13) (GNA13). Also involved in inflammation by acting as a diadenylate cyclase that catalyzes the condensation of 2 ATP molecules into c-di-AMP. Following activation by TLR9, mediates formation of c-di-AMP, which directly activates NLRP3, thereby promoting assembly and maturation of the NLRP3 inflammasome. It is also required for the optimal functions of B- and T cells during adaptive immune responses by regulating cAMP synthesis in both B- and T-cells.

Subunit / interactions. Interacts with TLR9; leading to ADCY7 activation and synthesis of cyclic di-AMP (c-di-AMP).

Subcellular location. Membrane.

Post-translational modifications. Phosphorylated by PRKCD.

Activity regulation. Activated by G(s) G alpha protein (GNAS). Inhibited by G(i) G alpha protein GNAI1. Activated by GNA13 and GNA12. Ethanol and phorbol 12,13-dibutanoate significantly potentiate adenylate cyclase activity generated in response to the activation of the prostanoid receptor by the agonist prostaglandin E1(1-) in a PKC-dependent manner. Inhibited by lithium. Activated by TLR9, promoting synthesis of cyclic di-AMP (c-di-AMP).

Cofactor. Binds 2 magnesium ions per subunit. Is also active with manganese (in vitro).

Domain organisation. The protein contains two modules with six transmembrane helices each; both are required for catalytic activity. Isolated N-terminal or C-terminal guanylate cyclase domains have no catalytic activity, but when they are brought together, enzyme activity is restored. The active site is at the interface of the two domains. Both contribute substrate-binding residues, but the catalytic metal ions are bound exclusively via the N-terminal guanylate cyclase domain.

Similarity. Belongs to the adenylyl cyclase class-4/guanylyl cyclase family.

RefSeq proteins (2): NP_001105, NP_001272986 (=MANE)

Domains & families (InterPro)

IDNameType
IPR001054A/G_cyclaseDomain
IPR009398Adcy_conserved_domDomain
IPR018297A/G_cyclase_CSConserved_site
IPR029787Nucleotide_cyclaseHomologous_superfamily
IPR030672AdcyFamily
IPR032628AC_NDomain

Pfam: PF00211, PF06327, PF16214

Enzyme classification (BRENDA):

  • EC 4.6.1.1 — adenylate cyclase (BRENDA: 120 organisms, 167 substrates, 404 inhibitors, 155 Km, 27 kcat entries)

Substrate kinetics (BRENDA)

9 substrates with measured Km, best-characterized 9. Km ranges are aggregated across organisms/conditions.

SubstrateKm (mM)Measurements
ATP0.0005–8.78135
MGATP2-0.009–2.24
MNATP2-0.067–0.0862
ADENYLIMIDODIPHOSPHATE0.331
CAMP141
DATP0.441
DEOXYCAMP131
DIPHOSPHATE1.91
GTP1.381

Catalyzed reactions (Rhea), 2 shown:

  • ATP = 3’,5’-cyclic AMP + diphosphate (RHEA:15389)
  • 2 ATP = 3’,3’-c-di-AMP + 2 diphosphate (RHEA:35655)

UniProt features (44 total): transmembrane region 12, binding site 12, region of interest 5, mutagenesis site 5, topological domain 3, glycosylation site 3, domain 2, chain 1, compositionally biased region 1

Structure

Experimental structures (PDB)

0 structures.

Predicted structure (AlphaFold)

ModelpLDDTFraction very-high
AF-P51828-F177.320.33

Functional residue map

Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.

Ligand- & substrate-binding residues (12): 284–289; 284; 284; 285; 326–328; 328; 328; 372; 931; 1010–1012; 1017–1021; 1057

Glycosylation sites (3): 701, 776, 781

Mutagenesis-validated functional residues (5):

PositionPhenotype
477–482does not affect camp biosynthetic process in response to sphingosine 1-phosphate stimulation. reduces by 40% camp biosyn
485–489reduces camp biosynthetic process in response to c5 alpha chain stimulation and more severely in response to sphingosine
491–496does not affect camp biosynthetic process in response to c5 alpha chain stimulation. reduces by 40?60% camp biosynthetic
494–499does not affect camp biosynthetic process in response to c5 alpha chain stimulation. reduces by 40?60% camp biosynthetic
564–569reduces camp biosynthetic process in response to c5 alpha chain stimulation and more severely in response to sphingosine

Function

Pathways and Gene Ontology

Reactome pathways

46 pathways

IDPathway
R-HSA-163359Glucagon signaling in metabolic regulation
R-HSA-163615PKA activation
R-HSA-164378PKA activation in glucagon signalling
R-HSA-170660Adenylate cyclase activating pathway
R-HSA-170670Adenylate cyclase inhibitory pathway
R-HSA-418555G alpha (s) signalling events
R-HSA-418594G alpha (i) signalling events
R-HSA-418597G alpha (z) signalling events
R-HSA-432040Vasopressin regulates renal water homeostasis via Aquaporins
R-HSA-5610787Hedgehog ‘off’ state
R-HSA-9634597GPER1 signaling
R-HSA-9660821ADORA2B mediated anti-inflammatory cytokines production
R-HSA-9664323FCGR3A-mediated IL10 synthesis
R-HSA-9856530High laminar flow shear stress activates signaling by PIEZO1 and PECAM1:CDH5:KDR in endothelial cells
R-HSA-111885Opioid Signalling
R-HSA-111931PKA-mediated phosphorylation of CREB
R-HSA-111933Calmodulin induced events
R-HSA-111996Ca-dependent events
R-HSA-111997CaM pathway
R-HSA-112040G-protein mediated events
R-HSA-112043PLC beta mediated events
R-HSA-112314Neurotransmitter receptors and postsynaptic signal transmission
R-HSA-112315Transmission across Chemical Synapses
R-HSA-112316Neuronal System
R-HSA-1430728Metabolism
R-HSA-1489509DAG and IP3 signaling
R-HSA-162582Signal Transduction
R-HSA-163685Integration of energy metabolism
R-HSA-1643685Disease
R-HSA-372790Signaling by GPCR

MSigDB gene sets: 401 (showing top): GOBP_RESPONSE_TO_NITROGEN_COMPOUND, GOBP_RESPONSE_TO_ETHANOL, MULLIGHAN_NPM1_SIGNATURE_3_UP, BROWNE_HCMV_INFECTION_6HR_DN, WALLACE_PROSTATE_CANCER_RACE_UP, GOBP_INFLAMMATORY_RESPONSE, GOBP_TOLL_LIKE_RECEPTOR_9_SIGNALING_PATHWAY, GOBP_RESPONSE_TO_FLUID_SHEAR_STRESS, GOBP_REGULATION_OF_ADAPTIVE_IMMUNE_RESPONSE, REACTOME_G_ALPHA_Z_SIGNALLING_EVENTS, MODULE_45, GOBP_CELLULAR_RESPONSE_TO_FLUID_SHEAR_STRESS, GRAESSMANN_APOPTOSIS_BY_SERUM_DEPRIVATION_UP, GRAESSMANN_RESPONSE_TO_MC_AND_SERUM_DEPRIVATION_UP, MORI_IMMATURE_B_LYMPHOCYTE_UP

GO Biological Process (12): regulation of adaptive immune response (GO:0002819), renal water homeostasis (GO:0003091), cAMP biosynthetic process (GO:0006171), adenylate cyclase-activating G protein-coupled receptor signaling pathway (GO:0007189), intracellular signal transduction (GO:0035556), maternal process involved in female pregnancy (GO:0060135), cellular response to lithium ion (GO:0071285), cellular response to ethanol (GO:0071361), cellular response to glucagon stimulus (GO:0071377), vascular endothelial cell response to laminar fluid shear stress (GO:0097700), negative regulation of cytokine production involved in inflammatory response (GO:1900016), cyclic nucleotide biosynthetic process (GO:0009190)

GO Molecular Function (6): adenylate cyclase activity (GO:0004016), ATP binding (GO:0005524), metal ion binding (GO:0046872), nucleotide binding (GO:0000166), lyase activity (GO:0016829), phosphorus-oxygen lyase activity (GO:0016849)

GO Cellular Component (2): plasma membrane (GO:0005886), membrane (GO:0016020)

Reactome top-level categories

Rollup of top-18 pathways:

CategoryPathways
GPCR downstream signalling3
G-protein mediated events2
Anti-inflammatory response favouring Leishmania parasite infection2
Integration of energy metabolism1
PKA-mediated phosphorylation of CREB1
Glucagon signaling in metabolic regulation1
Activation of GABAB receptors1
Aquaporin-mediated transport1
Signaling by Hedgehog1
G alpha (s) signalling events1
Response of endothelial cells to shear stress1
G alpha (i) signalling events1
Calmodulin induced events1
CaM pathway1
PLC beta mediated events1

GO top-level categories

Rollup of top GO terms by namespace:

CategoryTerms
adaptive immune response1
regulation of immune response1
renal system process1
multicellular organismal-level water homeostasis1
purine ribonucleotide biosynthetic process1
cyclic nucleotide biosynthetic process1
cAMP metabolic process1
adenylate cyclase-modulating G protein-coupled receptor signaling pathway1
adenylate cyclase activator activity1
intracellular anatomical structure1
signal transduction1
female pregnancy1
multicellular organismal reproductive process1
response to lithium ion1
cellular response to metal ion1
response to ethanol1
cellular response to alcohol1
response to glucagon1
cellular response to peptide hormone stimulus1
cellular response to laminar fluid shear stress1
vascular endothelial cell response to fluid shear stress1
negative regulation of cytokine production1
cytokine production involved in inflammatory response1
regulation of cytokine production involved in inflammatory response1
nucleotide biosynthetic process1
cyclic nucleotide metabolic process1
cyclase activity1
phosphorus-oxygen lyase activity1
adenyl ribonucleotide binding1
purine ribonucleoside triphosphate binding1
cation binding1
nucleoside phosphate binding1
heterocyclic compound binding1
catalytic activity1
lyase activity1
membrane1
cell periphery1
cellular anatomical structure1

Protein interactions and networks

STRING

1174 interactions, top by confidence (×1000):

Protein AProtein BPartner UniProtScore
ADCY7SLC5A2P31639903
ADCY7SLC6A2P23975840
ADCY7CALML5Q9NZT1533
ADCY7RAPGEF4Q8WZA2531
ADCY7GNB1P04697498
ADCY7GNG7O60262495
ADCY7BRD7Q9NPI1493
ADCY7PDE4BQ07343485
ADCY7PDE7BQ9NP56484
ADCY7NKD1Q969G9474
ADCY7GNAI1P04898461
ADCY7CLBA1Q96F83457
ADCY7GNB2P11016439
ADCY7DRD3P35462436
ADCY7ADCY1Q08828432
ADCY7POLR1DP0DPB6432

IntAct

15 interactions, top by confidence:

ABTypeScore
VAPBFAM83Gpsi-mi:“MI:0914”(association)0.730
ADCY7H2BC9psi-mi:“MI:0915”(physical association)0.400
XRCC6ADCY7psi-mi:“MI:0915”(physical association)0.370
BUD31ADCY7psi-mi:“MI:0915”(physical association)0.370
ADCY7PLSCR1psi-mi:“MI:0915”(physical association)0.370
PIGHILVBLpsi-mi:“MI:0914”(association)0.350
ZDHHC12FAAHpsi-mi:“MI:0914”(association)0.350
CXCR3RIMOC1psi-mi:“MI:0914”(association)0.350
CXCR4ESYT2psi-mi:“MI:0914”(association)0.350
S1PR3STXBP3psi-mi:“MI:0914”(association)0.350
MFSD5ILVBLpsi-mi:“MI:0914”(association)0.350
SLC2A7GPR89Apsi-mi:“MI:0914”(association)0.350
SLC31A1DENND11psi-mi:“MI:0914”(association)0.350
SLC9A3ESYT3psi-mi:“MI:0914”(association)0.350

BioGRID (24): HIST1H2BH (Proximity Label-MS), ADCY7 (Affinity Capture-MS), ADCY7 (Affinity Capture-MS), ADCY7 (Affinity Capture-MS), ADCY7 (Affinity Capture-RNA), ADCY7 (Cross-Linking-MS (XL-MS)), ALDH5A1 (Co-fractionation), ALDH6A1 (Co-fractionation), AMIGO2 (Co-fractionation), DMWD (Co-fractionation), HACL1 (Co-fractionation), KCTD12 (Co-fractionation), MME (Co-fractionation), MST1R (Co-fractionation), PNPT1 (Co-fractionation)

ESM2 similar proteins: A0JMH2, A5K3F9, A6XGL0, A8IRK7, B0BNM1, B7QDG3, C3YDS7, D3ZEY4, D3ZU57, E2QRY6, E7FCP8, F6W8I0, F7DL67, F7FIH8, O14976, O88444, P16386, P51828, P52333, P52824, P53370, P70563, Q08828, Q0PIT9, Q17QN2, Q2KI13, Q2KI24, Q3TIU4, Q4R4T6, Q5GA22, Q5RAR6, Q5ZHX9, Q6AXQ5, Q6DHK1, Q6L8Q7, Q6P5E8, Q6QRN6, Q8CH40, Q8K2J9, Q8K4Z3

Diamond homologs: A0A0U1RPR8, A0A509APX1, B1Q257, E7EAU8, G5EEE9, O02740, O16544, O16715, O19179, O54865, O60503, O62179, P0A4Y1, P16065, P16066, P16067, P16068, P18293, P18910, P19686, P19687, P20594, P20595, P23897, P25092, P26770, P46197, P51828, P51830, P51839, P51840, P51841, P51842, P52785, P55202, P55203, P55204, P55205, P70106, P91550

SIGNOR signaling

3 interactions.

AEffectBMechanism
NF1up-regulatesADCY7
ADCY7“up-regulates quantity”“3’,5’-cyclic AMP”“chemical modification”
PRKCD“up-regulates activity”ADCY7phosphorylation

Disease & clinical

Clinical variants and AI predictions

ClinVar

176 variants total. Per-class counts are floors (≥ shown; pagination cap):

ClassificationCount (floor)
Pathogenic2
Likely pathogenic0
Uncertain significance129
Likely benign11
Benign7

Top pathogenic / likely-pathogenic (2)

Variant IDHGVSClassification
148654GRCh38/hg38 16q12.1-12.2(chr16:49570553-53467065)x1Pathogenic
59489GRCh38/hg38 16q12.1(chr16:49740807-51876620)x1Pathogenic

SpliceAI

4827 predictions. Top by Δscore:

VariantEffectΔscore
16:50288347:GGGG:Gdonor_gain1.0000
16:50288348:G:GTdonor_gain1.0000
16:50288348:GGG:Gdonor_gain1.0000
16:50288349:GG:Gdonor_gain1.0000
16:50288349:GGG:Gdonor_gain1.0000
16:50288350:GG:Gdonor_gain1.0000
16:50288351:G:Tdonor_loss1.0000
16:50288352:T:Gdonor_loss1.0000
16:50288353:GAGT:Gdonor_loss1.0000
16:50290658:CAG:Cdonor_loss1.0000
16:50290659:AGGTA:Adonor_loss1.0000
16:50290660:GG:Gdonor_loss1.0000
16:50290661:G:GAdonor_loss1.0000
16:50290662:T:Gdonor_loss1.0000
16:50292668:A:AGacceptor_gain1.0000
16:50292669:C:Gacceptor_gain1.0000
16:50292673:CA:Cacceptor_loss1.0000
16:50292674:A:AGacceptor_gain1.0000
16:50292674:A:Gacceptor_loss1.0000
16:50292674:AGCT:Aacceptor_gain1.0000
16:50292675:G:GCacceptor_gain1.0000
16:50292675:GC:Gacceptor_gain1.0000
16:50292675:GCT:Gacceptor_gain1.0000
16:50292675:GCTG:Gacceptor_gain1.0000
16:50292675:GCTGC:Gacceptor_gain1.0000
16:50292821:AGCAG:Adonor_loss1.0000
16:50292822:GCAG:Gdonor_gain1.0000
16:50292822:GCAGG:Gdonor_loss1.0000
16:50292823:CAGG:Cdonor_loss1.0000
16:50292824:AGG:Adonor_loss1.0000

AlphaMissense

0 scored. Top likely-pathogenic:

dbSNP variants (sampled 300 via entrez): RS1000025031 (16:50254565 G>A,C), RS1000048117 (16:50294012 C>A), RS1000121288 (16:50312450 C>G,T), RS1000164472 (16:50277426 G>A), RS1000183954 (16:50316571 C>T), RS1000278725 (16:50276235 C>T), RS1000311696 (16:50248481 C>T), RS1000314822 (16:50288338 C>T), RS1000323166 (16:50270996 C>G), RS1000340364 (16:50317054 G>A), RS1000358711 (16:50283473 C>T), RS1000360639 (16:50243144 C>T), RS1000378136 (16:50316783 C>CTTTT), RS1000391375 (16:50242942 G>A), RS1000463528 (16:50242800 G>A)

Disease associations

OMIM: gene MIM:600385 | disease phenotypes: MIM:107480, MIM:614844

GenCC curated gene-disease

Mondo (3): breast ductal adenocarcinoma (MONDO:0005590), Townes-Brocks syndrome (MONDO:0007142), nephronophthisis 14 (MONDO:0013916)

Orphanet (3): Syndromic anorectal malformation (Orphanet:117573), Joubert syndrome with oculorenal defect (Orphanet:2318), Townes-Brocks syndrome (Orphanet:857)

HPO phenotypes

0 total (0 of 0 shown, HPO-id order):

GWAS associations

8 associations (top):

StudyTraitp-value
GCST001729_21Crohn’s disease6.000000e-209
GCST003097_44Pediatric autoimmune diseases6.000000e-09
GCST004131_82Inflammatory bowel disease2.000000e-12
GCST004133_49Ulcerative colitis3.000000e-13
GCST008658_1Ulcerative colitis1.000000e-14
GCST010571_64Autoimmune thyroid disease1.000000e-14
GCST90002381_88Eosinophil count1.000000e-11
GCST90002382_439Eosinophil percentage of white cells9.000000e-17

EFO canonical traits (2, from GWAS)

EFO IDTrait name
EFO:0004842eosinophil count
EFO:0007991eosinophil percentage of leukocytes

MeSH disease descriptors (2)

DescriptorNameTree numbers
D018270Carcinoma, Ductal, BreastC04.557.470.200.025.232.500; C04.557.470.615.132.500; C04.588.180.390; C17.800.090.500.390
C536974Townes-Brocks syndrome (supp.)

Drugs & pharmacology

Drug and pharmacology data

Is drug target: yes

ChEMBL targets (1): CHEMBL2097167 (PROTEIN FAMILY)

PharmGKB: 1 entry (VIP=true, CPIC=false)

GtoPdb / IUPHAR curated pharmacology

(IUPHAR/BPS Guide to Pharmacology — expert-curated)

Target class: enzyme — Adenylyl cyclases (ACs)

ChEMBL bioactivities

24 potent at pChembl≥5 of 24 total, top 24 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).

pChemblTypeValueUnitMolecule
9.06Ki0.88nMCHEMBL3142312
8.77Ki1.7nMCHEMBL3142318
8.77Ki1.7nMCHEMBL3142332
8.72Ki1.9nMCHEMBL3142329
8.60Ki2.5nMCHEMBL3142331
8.59Ki2.6nMCHEMBL2369777
8.41Ki3.9nMCHEMBL2369525
8.38Ki4.2nMCHEMBL2369778
8.11Ki7.8nMCHEMBL3142313
7.85Ki14nMCHEMBL66087
7.77Ki17nMCHEMBL418135
7.70Ki20nMCHEMBL293907
7.54Ki29nMCHEMBL305151
7.48Ki33nMCHEMBL62123
7.16Ki69nMCHEMBL305151
7.15EC5071nM(R)-SKF-38393
6.96Ki110nMCHEMBL62412
6.84Ki144nMCHEMBL64475
6.59Ki254nMCHEMBL62444
6.52Ki300nMCHEMBL62892
6.50Ki317nMCHEMBL64646
6.21Ki610nMCHEMBL418468
6.00Ki1000nMCHEMBL64955
5.28EC505200nMCHEMBL57873

PubChem BioAssay actives

24 with measured affinity, of 52 total; 23 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.

CompoundAssayTypeValueUnit
(4R,7S,10S,13S,16S)-N-[(2R)-1-[[(2R)-1-amino-5-(diaminomethylideneamino)-1-oxopentan-2-yl]amino]-5-(diaminomethylideneamino)-1-oxopentan-2-yl]-7-(2-amino-2-oxoethyl)-13-benzyl-20,20-dicyclopentyl-16-[(4-ethoxyphenyl)methyl]-6,9,12,15,18-pentaoxo-10-propan-2-yl-1,2-dithia-5,8,11,14,17-pentazacycloicosane-4-carboxamide34311: Compound was evaluated for the inhibition constant for inhibition of 8-lysine-vasopressin stimulated adenylate cyclase of pig kidney medullary membraneki0.0009uM
(4R,7S,10S,13S,16S)-N-[(2S)-1-[[(2S)-1-amino-5-(diaminomethylideneamino)-1-oxopentan-2-yl]amino]-5-(diaminomethylideneamino)-1-oxopentan-2-yl]-7-(2-amino-2-oxoethyl)-13-benzyl-20,20-dicyclopentyl-16-[(4-ethoxyphenyl)methyl]-6,9,12,15,18-pentaoxo-10-propan-2-yl-1,2-dithia-5,8,11,14,17-pentazacycloicosane-4-carboxamide34311: Compound was evaluated for the inhibition constant for inhibition of 8-lysine-vasopressin stimulated adenylate cyclase of pig kidney medullary membraneki0.0017uM
(4R,7S,10S,13S,16S)-N-[(2S)-1-[[(2R)-1-amino-5-(diaminomethylideneamino)-1-oxopentan-2-yl]amino]-5-(diaminomethylideneamino)-1-oxopentan-2-yl]-7-(2-amino-2-oxoethyl)-13-benzyl-20,20-dicyclopentyl-16-[(4-ethoxyphenyl)methyl]-6,9,12,15,18-pentaoxo-10-propan-2-yl-1,2-dithia-5,8,11,14,17-pentazacycloicosane-4-carboxamide34311: Compound was evaluated for the inhibition constant for inhibition of 8-lysine-vasopressin stimulated adenylate cyclase of pig kidney medullary membraneki0.0017uM
(4R,7S,10S,13S,16S)-N-[(2R)-1-[[(2S)-1-amino-5-(diaminomethylideneamino)-1-oxopentan-2-yl]amino]-5-(diaminomethylideneamino)-1-oxopentan-2-yl]-7-(2-amino-2-oxoethyl)-13-benzyl-20,20-dicyclopentyl-16-[(4-ethoxyphenyl)methyl]-6,9,12,15,18-pentaoxo-10-propan-2-yl-1,2-dithia-5,8,11,14,17-pentazacycloicosane-4-carboxamide34311: Compound was evaluated for the inhibition constant for inhibition of 8-lysine-vasopressin stimulated adenylate cyclase of pig kidney medullary membraneki0.0019uM
(4R,7S,10S,13S,16S)-N-[(2S)-1-amino-5-(diaminomethylideneamino)-1-oxopentan-2-yl]-7-(2-amino-2-oxoethyl)-13-benzyl-20,20-dicyclopentyl-16-[(4-ethoxyphenyl)methyl]-6,9,12,15,18-pentaoxo-10-propan-2-yl-1,2-dithia-5,8,11,14,17-pentazacycloicosane-4-carboxamide34312: Compound was evaluated for the inhibition constant for inhibition of 8-lysine-vasopressin stimulated adenylate cyclase of pig kidney medullary membraneki0.0025uM
(4R,7S,10S,13S,16R)-7-(2-amino-2-oxoethyl)-13-benzyl-20,20-dicyclopentyl-N-[(2S)-5-(diaminomethylideneamino)-1-[[(2S)-1,6-diamino-1-oxohexan-2-yl]amino]-1-oxopentan-2-yl]-16-[(4-ethoxyphenyl)methyl]-6,9,12,15,18-pentaoxo-10-propan-2-yl-1,2-dithia-5,8,11,14,17-pentazacycloicosane-4-carboxamide34311: Compound was evaluated for the inhibition constant for inhibition of 8-lysine-vasopressin stimulated adenylate cyclase of pig kidney medullary membraneki0.0026uM
(2S)-N-[(2S)-1-amino-5-(diaminomethylideneamino)-1-oxopentan-2-yl]-1-[(4R,7S,10S,13S,16R)-7-(2-amino-2-oxoethyl)-13-benzyl-20,20-dicyclopentyl-16-[(4-ethoxyphenyl)methyl]-6,9,12,15,18-pentaoxo-10-propan-2-yl-1,2-dithia-5,8,11,14,17-pentazacycloicosane-4-carbonyl]pyrrolidine-2-carboxamide34311: Compound was evaluated for the inhibition constant for inhibition of 8-lysine-vasopressin stimulated adenylate cyclase of pig kidney medullary membraneki0.0039uM
(4R,7S,10S,13S,16R)-N-[(2S)-6-amino-1-[[(2S)-1-amino-5-(diaminomethylideneamino)-1-oxopentan-2-yl]amino]-1-oxohexan-2-yl]-7-(2-amino-2-oxoethyl)-13-benzyl-20,20-dicyclopentyl-16-[(4-ethoxyphenyl)methyl]-6,9,12,15,18-pentaoxo-10-propan-2-yl-1,2-dithia-5,8,11,14,17-pentazacycloicosane-4-carboxamide34311: Compound was evaluated for the inhibition constant for inhibition of 8-lysine-vasopressin stimulated adenylate cyclase of pig kidney medullary membraneki0.0042uM
(2S)-2-[[(2S)-2-[[(4R,7S,10S,13S,16S)-7-(2-amino-2-oxoethyl)-13-benzyl-20,20-dicyclopentyl-16-[(4-ethoxyphenyl)methyl]-6,9,12,15,18-pentaoxo-10-propan-2-yl-1,2-dithia-5,8,11,14,17-pentazacycloicosane-4-carbonyl]amino]-5-(diaminomethylideneamino)pentanoyl]amino]-5-(diaminomethylideneamino)pentanoic acid34311: Compound was evaluated for the inhibition constant for inhibition of 8-lysine-vasopressin stimulated adenylate cyclase of pig kidney medullary membraneki0.0078uM
3-[[4-[1-[4-(2,4-dichlorophenyl)anilino]-1-oxooctan-2-yl]oxybenzoyl]amino]propanoic acid34294: In vitro inhibitory activity against glucagon induced human adenylate cyclaseki0.0140uM
3-[[4-[1-[4-(1-benzofuran-2-yl)anilino]-1-oxooctan-2-yl]oxybenzoyl]amino]propanoic acid34294: In vitro inhibitory activity against glucagon induced human adenylate cyclaseki0.0170uM
3-[[4-[2-[[4-(1-benzofuran-2-yl)phenyl]carbamoyl]octyl]benzoyl]amino]propanoic acid34294: In vitro inhibitory activity against glucagon induced human adenylate cyclaseki0.0200uM
3-[[4-[3-[4-(1-benzofuran-2-yl)anilino]-2-(4-tert-butylphenyl)-3-oxopropyl]benzoyl]amino]propanoic acid34296: In vitro inhibitory activity against glucagon induced human adenylate cyclaseki0.0290uM
3-[[4-[2-(4-tert-butylphenyl)-3-[4-(2,4-dichlorophenyl)anilino]-3-oxopropyl]benzoyl]amino]propanoic acid34296: In vitro inhibitory activity against glucagon induced human adenylate cyclaseki0.0330uM
(5R)-5-phenyl-2,3,4,5-tetrahydro-1H-3-benzazepine-7,8-diol34592: Compound was tested for the adenylate cyclase stimulationec500.0710uM
3-[[4-[2-(4-tert-butylphenyl)-3-oxo-3-[4-(trifluoromethoxy)anilino]propyl]benzoyl]amino]propanoic acid34296: In vitro inhibitory activity against glucagon induced human adenylate cyclaseki0.1100uM
3-[[4-[1-(4-tert-butylphenyl)-2-oxo-2-(4-phenylanilino)ethoxy]benzoyl]amino]propanoic acid34294: In vitro inhibitory activity against glucagon induced human adenylate cyclaseki0.1440uM
3-[[4-[[(4-tert-butylcyclohexyl)-[[4-(trifluoromethoxy)phenyl]carbamoyl]amino]methyl]benzoyl]amino]propanoic acid34294: In vitro inhibitory activity against glucagon induced human adenylate cyclaseki0.2540uM
3-[[4-[2-(4-tert-butylphenyl)-3-oxo-3-(4-phenylanilino)propyl]benzoyl]amino]propanoic acid34296: In vitro inhibitory activity against glucagon induced human adenylate cyclaseki0.3000uM
4-[1-(4-tert-butylphenyl)-2-oxo-2-(4-phenylanilino)ethoxy]-N-(2H-tetrazol-5-yl)benzamide34294: In vitro inhibitory activity against glucagon induced human adenylate cyclaseki0.3170uM
3-[[4-[2-(4-tert-butylphenyl)-3-oxo-3-(quinolin-3-ylamino)propyl]benzoyl]amino]propanoic acid34294: In vitro inhibitory activity against glucagon induced human adenylate cyclaseki0.6100uM
3-[[4-[2-(4-tert-butylphenyl)-3-[4-(hydroxymethyl)anilino]-3-oxopropyl]benzoyl]amino]propanoic acid34294: In vitro inhibitory activity against glucagon induced human adenylate cyclaseki1.0000uM
2,3,4,5-tetrahydro-1H-3-benzazepine-7,8-diol34592: Compound was tested for the adenylate cyclase stimulationec505.2000uM

CTD chemical–gene interactions

54 total (human), top 30 by PubMed support.

ChemicalActions (top 5)PubMed papers
Valproic Acidincreases methylation, affects expression, increases expression4
(+)-JQ1 compounddecreases expression3
Benzo(a)pyreneaffects methylation, increases expression3
Air Pollutantsincreases expression, affects cotreatment, decreases expression, increases abundance2
Phenylmercuric Acetateaffects cotreatment, decreases expression2
Cyclosporineincreases expression2
ammonium 2,3,3,3-tetrafluoro-2-(heptafluoropropoxy)-propanoateaffects expression, affects cotreatment1
dicrotophosincreases expression1
methylmercuric chloridedecreases expression1
triphenyl phosphateaffects expression1
alpha-pineneaffects cotreatment, decreases expression, increases abundance1
2,2’-methylenebis(4-methyl-6-tert-butylphenol)affects expression, affects response to substance1
trichostatin Aincreases expression1
tris(2-butoxyethyl) phosphateaffects expression1
beta-lapachoneincreases expression1
arseniteaffects binding, decreases reaction1
tris(1,3-dichloro-2-propyl)phosphateincreases expression1
perfluorooctanoic acidaffects cotreatment, affects expression1
benzo(e)pyreneincreases methylation1
aflatoxin B2decreases methylation1
nickel sulfatedecreases expression1
methacrylaldehydedecreases expression, increases abundance, affects cotreatment1
S-(1,2-dichlorovinyl)cysteineaffects cotreatment, decreases expression1
perfluorooctane sulfonic acidaffects expression, affects cotreatment1
CGP 52608increases reaction, affects binding1
entinostatincreases expression1
4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamideaffects cotreatment, decreases expression1
abrinedecreases expression1
dorsomorphinaffects cotreatment, decreases expression1
perfluorobutanesulfonic acidaffects cotreatment, affects expression1

ChEMBL screening assays

16 unique, capped per target: 14 binding, 2 functional

Representative assays (with source publication via chembl_document):

Assay IDTypeDescriptionSource paper
CHEMBL3284336BindingAgonist activity at adenylyl cyclase (unknown origin) at 1.35 x 10’-4 MSynthesis of a fragment of human parathyroid hormore, hPTH-(44-68). — J Med Chem
CHEMBL645298FunctionalIn vitro antagonist activity was measured by inhibition of vasopressin-stimulated adenylate cyclase in renal medullary preparation in pigDicarbavasopressin antagonist analogues exhibit reduced in vivo agonist activity. — J Med Chem

Cellosaurus cell lines

3 cell lines: 3 cancer cell line

First 10 cell lines (id-ordered, not curated):

CellosaurusNameCategorySex
CVCL_B1J4Abcam HeLa ADCY7 KOCancer cell lineFemale
CVCL_SB69HAP1 ADCY7 (-) 1Cancer cell lineMale
CVCL_XL06HAP1 ADCY7 (-) 2Cancer cell lineMale

Clinical trials (associated diseases)

11 trials via MONDO — disease-level, not drug-specific.

TrialPhaseStatusTitle
NCT03414970PHASE3ACTIVE_NOT_RECRUITINGHypofractionated Radiation Therapy After Mastectomy in Preventing Recurrence in Patients With Stage IIa-IIIa Breast Cancer
NCT00461344PHASE2TERMINATEDDocetaxel + Doxorubicin as Neoadjuvant Chemotherapy in Patients With Breast Cancer
NCT07499999PHASE2NOT_YET_RECRUITINGRandomized Double-Blind Phase II Trial of Baby Exemestane Versus Baby Tamoxifen in Post-Menopausal Women at High Risk for Breast Cancer
NCT00637364PHASE1/PHASE2SUSPENDEDHigh Intensity Focused Ultrasound Tumor Treatment for Pancreatic Cancer Pain
NCT02779855PHASE1/PHASE2COMPLETEDTalimogene Laherparepvec in Combination With Neoadjuvant Chemotherapy in Triple Negative Breast Cancer
NCT01753908EARLY_PHASE1COMPLETEDBroccoli Sprout Extract in Treating Patients With Breast Cancer
NCT01796041EARLY_PHASE1COMPLETEDIntraoperative Imaging of Breast Cancer With Indocyanine Green
NCT01208974Not specifiedACTIVE_NOT_RECRUITINGNipple-Areola Complex (NAC) Irradiation After Nipple-Sparing Mastectomy and Reconstruction
NCT01875198Not specifiedTERMINATEDOncologic Impact of Splenectomy-omitting Radical Pancreatectomy in Well-selected Left-sided Pancreatic Cancer
NCT03543397Not specifiedUNKNOWNMRI in Ductal Carcinoma in Situ (DCIS)
NCT03834532Not specifiedCOMPLETEDLiving Well After Breast Surgery