ADGB
geneOn this page
Also known as FLJ23121dJ408K24.1CAPN16
Summary
ADGB (androglobin, HGNC:21212) is a protein-coding gene on chromosome 6q24.3, encoding Androglobin (Q8N7X0). Probable chimeric globin with a bis-histidyl six-coordinate heme-iron atom through which it could bind dioxygen, carbon monoxide and nitric oxide.
Predicted to enable several functions, including calcium-dependent cysteine-type endopeptidase activity; heme binding activity; and oxygen binding activity. Predicted to be involved in spermatid development. Predicted to be located in sperm flagellum. Predicted to be active in sperm annulus and sperm midpiece.
Source: NCBI Gene 79747 — RefSeq curated summary.
At a glance
- GWAS associations: 6
- Clinical variants (ClinVar): 280 total — 5 pathogenic
- MANE Select transcript:
NM_024694
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:21212 |
| Approved symbol | ADGB |
| Name | androglobin |
| Location | 6q24.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | FLJ23121, dJ408K24.1, CAPN16 |
| Ensembl gene | ENSG00000118492 |
| Ensembl biotype | protein_coding |
| OMIM | 614630 |
| Entrez | 79747 |
Gene structure
Transcript identifiers
Ensembl transcripts: 13 — 8 protein_coding, 3 nonsense_mediated_decay, 1 retained_intron, 1 protein_coding_CDS_not_defined
ENST00000326916, ENST00000326929, ENST00000367490, ENST00000397944, ENST00000470716, ENST00000473647, ENST00000480328, ENST00000493950, ENST00000522242, ENST00000522396, ENST00000523560, ENST00000681847, ENST00000707164
RefSeq mRNA: 1 — MANE Select: NM_024694
NM_024694
Canonical transcript exons
ENST00000397944 — 36 exons
| Exon | Start | End |
|---|---|---|
| ENSE00002137727 | 146598972 | 146599114 |
| ENSE00002226168 | 146724186 | 146724327 |
| ENSE00002245065 | 146726083 | 146726197 |
| ENSE00003464503 | 146784618 | 146784794 |
| ENSE00003472436 | 146752530 | 146752714 |
| ENSE00003474729 | 146769020 | 146769131 |
| ENSE00003480696 | 146644773 | 146644865 |
| ENSE00003482720 | 146733893 | 146734030 |
| ENSE00003483109 | 146788389 | 146788610 |
| ENSE00003502193 | 146692825 | 146692915 |
| ENSE00003508161 | 146654135 | 146654206 |
| ENSE00003508499 | 146676313 | 146676441 |
| ENSE00003513753 | 146672220 | 146672467 |
| ENSE00003518555 | 146685734 | 146685828 |
| ENSE00003528088 | 146700941 | 146701070 |
| ENSE00003530225 | 146666816 | 146666902 |
| ENSE00003538073 | 146763901 | 146764100 |
| ENSE00003542729 | 146664201 | 146664340 |
| ENSE00003567739 | 146740459 | 146740593 |
| ENSE00003572418 | 146691116 | 146691290 |
| ENSE00003582411 | 146785610 | 146785712 |
| ENSE00003583912 | 146782020 | 146782192 |
| ENSE00003587092 | 146715382 | 146715415 |
| ENSE00003587424 | 146733120 | 146733255 |
| ENSE00003593996 | 146801828 | 146802011 |
| ENSE00003601657 | 146656771 | 146656980 |
| ENSE00003616281 | 146728574 | 146728741 |
| ENSE00003620251 | 146635375 | 146635537 |
| ENSE00003626340 | 146717536 | 146717599 |
| ENSE00003635021 | 146801183 | 146801279 |
| ENSE00003649560 | 146741118 | 146741271 |
| ENSE00003650673 | 146721403 | 146721505 |
| ENSE00003664495 | 146716883 | 146717069 |
| ENSE00003671725 | 146815032 | 146815462 |
| ENSE00003679280 | 146745922 | 146746109 |
| ENSE00003680903 | 146736498 | 146736591 |
Expression profiles
Bgee: expression breadth ubiquitous, 124 present calls, max score 95.10.
FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.3466 / max 86.7638, expressed in 72 samples.
FANTOM5 promoters (4 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 70368 | 0.2293 | 58 |
| 70367 | 0.0960 | 41 |
| 70370 | 0.0184 | 5 |
| 204235 | 0.0030 | 2 |
Top tissues by expression
259 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| right uterine tube | UBERON:0001302 | 95.10 | gold quality |
| bronchial epithelial cell | CL:0002328 | 92.38 | gold quality |
| epithelium of bronchus | UBERON:0002031 | 90.73 | gold quality |
| bronchus | UBERON:0002185 | 89.17 | gold quality |
| olfactory segment of nasal mucosa | UBERON:0005386 | 86.81 | gold quality |
| left testis | UBERON:0004533 | 86.40 | gold quality |
| sperm | CL:0000019 | 85.78 | gold quality |
| right testis | UBERON:0004534 | 85.26 | gold quality |
| testis | UBERON:0000473 | 83.80 | gold quality |
| male germ cell | CL:0000015 | 83.77 | gold quality |
| mucosa of paranasal sinus | UBERON:0005030 | 83.29 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 80.34 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 77.85 | gold quality |
| epithelium of nasopharynx | UBERON:0001951 | 74.27 | gold quality |
| nasal cavity epithelium | UBERON:0005384 | 70.93 | gold quality |
| right lung | UBERON:0002167 | 70.14 | gold quality |
| fallopian tube | UBERON:0003889 | 67.95 | gold quality |
| nasal cavity mucosa | UBERON:0001826 | 67.91 | gold quality |
| oviduct epithelium | UBERON:0004804 | 63.25 | gold quality |
| left uterine tube | UBERON:0001303 | 61.67 | gold quality |
| choroid plexus epithelium | UBERON:0003911 | 60.98 | gold quality |
| caput epididymis | UBERON:0004358 | 60.22 | gold quality |
| rectum | UBERON:0001052 | 57.61 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 54.88 | gold quality |
| hypothalamus | UBERON:0001898 | 54.44 | gold quality |
| lung | UBERON:0002048 | 53.64 | gold quality |
| adult organism | UBERON:0007023 | 53.27 | gold quality |
| corpus callosum | UBERON:0002336 | 53.26 | gold quality |
| granulocyte | CL:0000094 | 52.96 | gold quality |
| endocervix | UBERON:0000458 | 51.70 | gold quality |
Single-cell (SCXA)
Detected in 3 experiment(s), a significant marker in 2.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 10.46 |
| E-MTAB-9388 | yes | 7.06 |
| E-MTAB-7303 | no | 14.02 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
21 targeting ADGB, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4692 | 100.00 | 67.32 | 2066 |
| HSA-MIR-6833-3P | 100.00 | 70.63 | 3197 |
| HSA-MIR-4514 | 99.99 | 67.10 | 1870 |
| HSA-MIR-4482-3P | 99.98 | 72.50 | 3147 |
| HSA-MIR-335-3P | 99.93 | 73.36 | 4958 |
| HSA-MIR-3671 | 99.90 | 73.04 | 3897 |
| HSA-MIR-12119 | 99.87 | 68.35 | 1653 |
| HSA-MIR-579-3P | 99.86 | 71.66 | 3628 |
| HSA-MIR-6079 | 99.84 | 68.54 | 1170 |
| HSA-MIR-664B-3P | 99.84 | 71.65 | 3590 |
| HSA-MIR-200B-5P | 99.76 | 69.05 | 948 |
| HSA-MIR-548AU-3P | 99.70 | 68.22 | 1373 |
| HSA-MIR-4690-5P | 99.65 | 66.24 | 813 |
| HSA-MIR-302A-5P | 99.39 | 68.21 | 1913 |
| HSA-MIR-4263 | 99.18 | 69.25 | 2236 |
| HSA-MIR-6510-5P | 99.14 | 66.59 | 1081 |
| HSA-MIR-3619-5P | 99.00 | 68.87 | 2308 |
| HSA-MIR-214-3P | 98.71 | 68.12 | 2128 |
| HSA-MIR-761 | 98.71 | 68.07 | 2051 |
| HSA-MIR-5694 | 97.06 | 67.70 | 682 |
| HSA-MIR-4661-5P | 93.34 | 67.13 | 400 |
Literature-anchored findings (GeneRIF, showing 4)
- Molecular evolutionary analyses indicate that this chimeric globin family is phylogenetically ancient and originated in the common ancestor to animals and choanoflagellates. In humans and mice, the gene is predominantly expressed in testis tissue. (PMID:22115833)
- Suggest ADGB is involved in the progression of glioma in vitro. (PMID:24966926)
- Androglobin gene expression patterns and FOXJ1-dependent regulation indicate its functional association with ciliogenesis. (PMID:33453283)
- ADGB variants cause asthenozoospermia and male infertility. (PMID:36995441)
Cross-species orthologs
11 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | adgb | ENSDARG00000005595 |
| mus_musculus | Adgb | ENSMUSG00000050994 |
| rattus_norvegicus | Adgb | ENSRNOG00000042741 |
| caenorhabditis_elegans | WBGENE00000542 | |
| caenorhabditis_elegans | clp-3 | WBGENE00000544 |
| caenorhabditis_elegans | WBGENE00000546 | |
| caenorhabditis_elegans | WBGENE00000547 | |
| caenorhabditis_elegans | clp-8 | WBGENE00009695 |
| caenorhabditis_elegans | clpr-3 | WBGENE00010417 |
| caenorhabditis_elegans | clpr-1 | WBGENE00012233 |
| caenorhabditis_elegans | clpr-3 | WBGENE00013184 |
Paralogs (20): CAPN1 (ENSG00000014216), SRI (ENSG00000075142), CAPN6 (ENSG00000077274), CAPN3 (ENSG00000092529), CAPN15 (ENSG00000103326), GCA (ENSG00000115271), CAPNS1 (ENSG00000126247), CAPN7 (ENSG00000131375), CAPN9 (ENSG00000135773), CAPN11 (ENSG00000137225), CAPN10 (ENSG00000142330), CAPN5 (ENSG00000149260), PEF1 (ENSG00000162517), CAPN2 (ENSG00000162909), CAPN13 (ENSG00000162949), CAPN12 (ENSG00000182472), CAPN8 (ENSG00000203697), CAPN14 (ENSG00000214711), PDCD6 (ENSG00000249915), CAPNS2 (ENSG00000256812)
Protein
Protein identifiers
Androglobin — Q8N7X0 (reviewed: Q8N7X0)
All UniProt accessions (11): A0A7P0T963, A0AA34QVR3, Q8N7X0, E5RFN4, E5RG76, E5RGD1, E5RIM8, F8W7W4, H0Y334, H0YBE5, H0YC38
UniProt curated annotations — full annotation on UniProt →
Function. Probable chimeric globin with a bis-histidyl six-coordinate heme-iron atom through which it could bind dioxygen, carbon monoxide and nitric oxide. Required for sperm flagellum formation and maturation of elongating spermatids, thus playing an essential role in male fertility.
Subunit / interactions. Interacts with septin SEPT10; contributes to in vitro proteolytic cleavage of SEPT10 in a calmodulin-dependent manner. Interacts with CFAP69. Interacts with SPEF2. May interact with calmodulin.
Subcellular location. Cell projection. Cilium. Flagellum.
Disease relevance. Defects in ADGB may be the cause of asthenozoospermia, a condition in which the percentage of progressively motile sperm is abnormally low.
Domain organisation. The globin domain is circularly permuted. The globin domain, which normally consists of eight consecutive alpha-helices from A (N-terminal) to H (C-terminal), is circularly permutated and split into two parts. The part containing helices A and B is shifted C-terminally and is separated from the main globin sequence (helices C-H) by a potential calmodulin-binding IQ domain.
Similarity. In the central section; belongs to the globin family. In the N-terminal section; belongs to the peptidase C2 family.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q8N7X0-1 | 1 | yes |
| Q8N7X0-2 | 2 |
RefSeq proteins (1): NP_078970* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001300 | Peptidase_C2_calpain_cat | Domain |
| IPR012292 | Globin/Proto | Homologous_superfamily |
| IPR038765 | Papain-like_cys_pep_sf | Homologous_superfamily |
| IPR053033 | Androglobin-like | Family |
| IPR054093 | Androglobin_II | Domain |
| IPR054094 | Androglobin_IV | Domain |
| IPR054095 | Androglobin_V | Domain |
| IPR057249 | Globin_CP_ADGB | Domain |
Pfam: PF00648, PF22068, PF22069, PF22070
UniProt features (37 total): compositionally biased region 10, sequence conflict 8, region of interest 6, domain 4, sequence variant 3, binding site 2, splice variant 2, chain 1, coiled-coil region 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q8N7X0-F1 | 67.79 | 0.25 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Ligand- & substrate-binding residues (2): 792 (distal binding residue); 824 (proximal binding residue)
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 68 (showing top):
GSE45365_NK_CELL_VS_CD8A_DC_DN, GOBP_MALE_GAMETE_GENERATION, GOMF_CYSTEINE_TYPE_PEPTIDASE_ACTIVITY, GOBP_CELLULAR_PROCESS_INVOLVED_IN_REPRODUCTION_IN_MULTICELLULAR_ORGANISM, GOBP_DEVELOPMENTAL_PROCESS_INVOLVED_IN_REPRODUCTION, ACEVEDO_METHYLATED_IN_LIVER_CANCER_DN, GOMF_OXYGEN_BINDING, GOCC_MOTILE_CILIUM, GOCC_SPERM_MIDPIECE, GOBP_PROTEOLYSIS, GOCC_CILIUM, MULLIGHAN_MLL_SIGNATURE_1_UP, GOMF_PEPTIDASE_ACTIVITY, GOMF_TETRAPYRROLE_BINDING, DODD_NASOPHARYNGEAL_CARCINOMA_DN
GO Biological Process (4): proteolysis (GO:0006508), spermatid development (GO:0007286), spermatogenesis (GO:0007283), cell differentiation (GO:0030154)
GO Molecular Function (4): calcium-dependent cysteine-type endopeptidase activity (GO:0004198), oxygen binding (GO:0019825), heme binding (GO:0020037), metal ion binding (GO:0046872)
GO Cellular Component (6): sperm midpiece (GO:0097225), sperm annulus (GO:0097227), cilium (GO:0005929), motile cilium (GO:0031514), sperm flagellum (GO:0036126), cell projection (GO:0042995)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 3 |
| sperm flagellum | 2 |
| protein metabolic process | 1 |
| germ cell development | 1 |
| spermatid differentiation | 1 |
| developmental process involved in reproduction | 1 |
| male gamete generation | 1 |
| cellular developmental process | 1 |
| cysteine-type endopeptidase activity | 1 |
| small molecule binding | 1 |
| tetrapyrrole binding | 1 |
| cation binding | 1 |
| intraciliary transport particle | 1 |
| membrane-bounded organelle | 1 |
| plasma membrane bounded cell projection | 1 |
| cilium | 1 |
| 9+2 motile cilium | 1 |
Protein interactions and networks
STRING
1017 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| ADGB | NGB | Q9NPG2 | 846 |
| ADGB | CYGB | Q8WWM9 | 735 |
| ADGB | MB | P02144 | 716 |
| ADGB | GBE1 | Q04446 | 529 |
| ADGB | CCDC149 | Q6ZUS6 | 521 |
| ADGB | DRC11 | Q86XH1 | 480 |
| ADGB | OR9A2 | Q8NGT5 | 476 |
| ADGB | SAMD5 | Q5TGI4 | 470 |
| ADGB | WBP2NL | Q6ICG8 | 447 |
| ADGB | NAALAD2 | Q9Y3Q0 | 441 |
| ADGB | UROS | P10746 | 439 |
| ADGB | TEX38 | Q6PEX7 | 432 |
| ADGB | SLC36A1 | Q7Z2H8 | 428 |
| ADGB | ULK4 | Q96C45 | 427 |
| ADGB | ALAD | P13716 | 427 |
IntAct
8 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| ADGB | H1-1 | psi-mi:“MI:0915”(physical association) | 0.400 |
| ADGB | H1-5 | psi-mi:“MI:0915”(physical association) | 0.400 |
| ADGB | H2AC4 | psi-mi:“MI:0915”(physical association) | 0.400 |
| ADGB | H3C13 | psi-mi:“MI:0915”(physical association) | 0.400 |
| ADGB | IK | psi-mi:“MI:0915”(physical association) | 0.400 |
| DND1 | RPSA2 | psi-mi:“MI:0914”(association) | 0.350 |
| BMI1 | MEIS3P1 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (12): ADGB (Proximity Label-MS), ADGB (Proximity Label-MS), ADGB (Proximity Label-MS), ADGB (Proximity Label-MS), ADGB (Proximity Label-MS), ADGB (Affinity Capture-MS), ADGB (Proximity Label-MS), NPM1 (Cross-Linking-MS (XL-MS)), STIP1 (Cross-Linking-MS (XL-MS)), ADGB (Cross-Linking-MS (XL-MS)), SFPQ (Cross-Linking-MS (XL-MS)), ADGB (Affinity Capture-MS)
ESM2 similar proteins: A0A0R4IXF6, A1A5R8, A9ZLX4, D3YXJ0, E9PUQ8, G3UZ78, O00750, O15164, O54828, P30052, P40818, P48984, P52963, P59997, P97496, Q02225, Q08AX9, Q08BR4, Q08D35, Q16760, Q1LUC3, Q2I6J1, Q3UWM4, Q498F0, Q5JSH3, Q5JTW2, Q5RHD1, Q60665, Q64398, Q68FF0, Q6INA9, Q6NSI8, Q6NVE8, Q6PDG5, Q6ZMT4, Q7ZVP1, Q80U87, Q86XP1, Q8C5W4, Q8N7X0
Diamond homologs: A0FKG7, G3UZ78, Q00204, Q6BH66, Q7RZP7, Q8N7X0, Q9HFC8, Q92177, Q9R1S8, Q9Y6W3, Q9Y6Z8, Q5AK25, Q9VXH6
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
280 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 5 |
| Likely pathogenic | 0 |
| Uncertain significance | 254 |
| Likely benign | 10 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (5)
| Variant ID | HGVS | Classification |
|---|---|---|
| 242923 | NC_000006.11:g.146735206_147036914del301709 | Pathogenic |
| 394905 | GRCh37/hg19 6q24.2-25.1(chr6:144075695-152337005)x1 | Pathogenic |
| 563240 | GRCh37/hg19 6q24.2-25.1(chr6:144947731-150266155)x1 | Pathogenic |
| 57320 | GRCh38/hg38 6q24.3-25.1(chr6:146481119-151427629)x1 | Pathogenic |
| 58452 | GRCh38/hg38 6q24.2-25.2(chr6:144932561-152985364)x1 | Pathogenic |
SpliceAI
6215 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 6:146599112:AGA:A | donor_gain | 1.0000 |
| 6:146599113:GA:G | donor_gain | 1.0000 |
| 6:146599113:GAG:G | donor_gain | 1.0000 |
| 6:146599115:G:GG | donor_gain | 1.0000 |
| 6:146664341:G:GG | donor_gain | 1.0000 |
| 6:146672218:A:AG | acceptor_gain | 1.0000 |
| 6:146672219:G:GG | acceptor_gain | 1.0000 |
| 6:146676438:GATT:G | donor_gain | 1.0000 |
| 6:146685825:GATG:G | donor_gain | 1.0000 |
| 6:146716982:A:T | donor_gain | 1.0000 |
| 6:146716993:G:GT | donor_gain | 1.0000 |
| 6:146717070:G:GG | donor_gain | 1.0000 |
| 6:146717534:A:AG | acceptor_gain | 1.0000 |
| 6:146717535:G:GG | acceptor_gain | 1.0000 |
| 6:146717535:GAA:G | acceptor_gain | 1.0000 |
| 6:146717535:GAAAT:G | acceptor_gain | 1.0000 |
| 6:146733891:A:AG | acceptor_gain | 1.0000 |
| 6:146733892:G:GG | acceptor_gain | 1.0000 |
| 6:146740458:GACTA:G | acceptor_gain | 1.0000 |
| 6:146745920:A:AG | acceptor_gain | 1.0000 |
| 6:146745920:AGAAG:A | acceptor_gain | 1.0000 |
| 6:146745921:G:GG | acceptor_gain | 1.0000 |
| 6:146745921:GAA:G | acceptor_gain | 1.0000 |
| 6:146745921:GAAGG:G | acceptor_gain | 1.0000 |
| 6:146746091:A:G | donor_gain | 1.0000 |
| 6:146752527:CAGGT:C | acceptor_loss | 1.0000 |
| 6:146752528:A:T | acceptor_loss | 1.0000 |
| 6:146752529:G:GC | acceptor_loss | 1.0000 |
| 6:146752713:GT:G | donor_gain | 1.0000 |
| 6:146752715:G:GG | donor_gain | 1.0000 |
AlphaMissense
11002 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 6:146635451:T:A | W51R | 0.999 |
| 6:146635451:T:C | W51R | 0.999 |
| 6:146664294:T:A | W236R | 0.999 |
| 6:146664294:T:C | W236R | 0.999 |
| 6:146664212:A:C | R208S | 0.998 |
| 6:146664212:A:T | R208S | 0.998 |
| 6:146635442:T:A | W48R | 0.997 |
| 6:146635442:T:C | W48R | 0.997 |
| 6:146635481:T:A | W61R | 0.997 |
| 6:146635481:T:C | W61R | 0.997 |
| 6:146745982:T:A | W1080R | 0.997 |
| 6:146745982:T:C | W1080R | 0.997 |
| 6:146745992:G:C | R1083P | 0.997 |
| 6:146784764:G:C | W1394C | 0.997 |
| 6:146784764:G:T | W1394C | 0.997 |
| 6:146656888:T:A | W174R | 0.996 |
| 6:146656888:T:C | W174R | 0.996 |
| 6:146664211:G:C | R208T | 0.996 |
| 6:146691239:T:A | W479R | 0.996 |
| 6:146691239:T:C | W479R | 0.996 |
| 6:146692866:A:C | S510R | 0.996 |
| 6:146692868:T:A | S510R | 0.996 |
| 6:146692868:T:G | S510R | 0.996 |
| 6:146717035:T:A | W632R | 0.996 |
| 6:146717035:T:C | W632R | 0.996 |
| 6:146769062:T:A | W1265R | 0.996 |
| 6:146769062:T:C | W1265R | 0.996 |
| 6:146784762:T:A | W1394R | 0.996 |
| 6:146784762:T:C | W1394R | 0.996 |
| 6:146656944:T:A | N192K | 0.995 |
dbSNP variants (sampled 300 via entrez): RS1000004379 (6:146640299 C>A), RS1000009915 (6:146682260 C>T), RS1000026708 (6:146776329 A>G), RS1000053788 (6:146755715 A>C), RS1000054393 (6:146776065 A>G), RS1000062775 (6:146603631 A>C,T), RS1000063543 (6:146686297 T>C,G), RS1000079642 (6:146772428 TA>T), RS1000099426 (6:146669894 C>A,T), RS1000107981 (6:146764658 T>C), RS1000110591 (6:146731514 A>C), RS1000139486 (6:146678475 C>T), RS1000156859 (6:146719453 G>T), RS1000162913 (6:146649482 AT>A), RS1000167988 (6:146783092 A>G)
Disease associations
OMIM: gene MIM:614630 | disease phenotypes: MIM:300624
GenCC curated gene-disease
Mondo (1): fragile X syndrome (MONDO:0010383)
Orphanet (2): OBSOLETE: Symptomatic form of fragile X syndrome in female carriers (Orphanet:449291), Fragile X syndrome (Orphanet:908)
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
6 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST004691_2 | Huntington’s disease progression | 9.000000e-07 |
| GCST005727_1 | Peanut allergy (parent-of-origin effect) | 3.000000e-07 |
| GCST007239_13 | Ovarian cancer | 7.000000e-06 |
| GCST009202_4 | Rostral middle frontal gyrus volume | 4.000000e-06 |
| GCST009532_10 | Circulating leptin levels in high cardiovascular risk | 8.000000e-06 |
| GCST009532_24 | Circulating leptin levels in high cardiovascular risk | 7.000000e-06 |
EFO canonical traits (4, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0008336 | disease progression measurement |
| EFO:0005939 | parental genotype effect measurement |
| EFO:0007017 | peanut allergy measurement |
| EFO:0005000 | leptin measurement |
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D005600 | Fragile X Syndrome | C10.597.606.360.455.500; C16.131.260.830.300; C16.320.180.830.300; C16.320.322.500.500; C16.320.400.525.500 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
10 total (human), top 10 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Aflatoxin B1 | decreases methylation | 2 |
| bisphenol A | decreases methylation | 1 |
| sodium arsenite | affects methylation | 1 |
| Air Pollutants | increases abundance, increases expression | 1 |
| Arsenic | affects methylation | 1 |
| Benzo(a)pyrene | increases methylation, affects methylation | 1 |
| Methotrexate | decreases expression | 1 |
| Potassium Dichromate | decreases expression | 1 |
| Smoke | increases abundance, increases expression | 1 |
| Tobacco Smoke Pollution | decreases expression | 1 |
Clinical trials (associated diseases)
104 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00768820 | PHASE4 | RECRUITING | The Psychiatric and Cognitive Phenotypes in Velocardiofacial Syndrome |
| NCT00895752 | PHASE4 | COMPLETED | Riluzole in Fragile X Syndrome |
| NCT02642653 | PHASE4 | COMPLETED | Combining Lovastatin and a Parent-Implemented Language Intervention for Fragile X Syndrome |
| NCT05120505 | PHASE4 | RECRUITING | Metformin in Children With Fragile X Syndrome |
| NCT01282268 | PHASE3 | COMPLETED | Efficacy and Safety Study of STX209 (Arbaclofen) for Social Withdrawal in Adolescents and Adults With Fragile X Syndrome |
| NCT01325220 | PHASE3 | COMPLETED | Efficacy and Safety Study of STX209 (Arbaclofen) for the Treatment of Social Withdrawal in Children With Fragile X Syndrome |
| NCT01555333 | PHASE3 | TERMINATED | An Open Label Extension Study in Subjects With Fragile X Syndrome |
| NCT04977986 | PHASE3 | COMPLETED | Clinical Study of Cannabidiol in Children, Adolescents, and Young Adults With Fragile X Syndrome |
| NCT05358886 | PHASE3 | COMPLETED | A Study of BPN14770 in Male Adults (Aged 18 to 45) With Fragile X Syndrome |
| NCT05367960 | PHASE3 | ACTIVE_NOT_RECRUITING | An Open-Label Extension Study of BPN14770 in Subjects With Fragile X Syndrome |
| NCT00054730 | PHASE2 | COMPLETED | Effects of CX516 on Functioning in Fragile X Syndrome and Autism |
| NCT00420459 | PHASE2 | COMPLETED | A Prospective Open-label Study of Aripiprazole in Fragile X Syndrome |
| NCT00718341 | PHASE2 | COMPLETED | Efficacy, Safety and Tolerability of AFQ056 in Fragile X Patients |
| NCT00788073 | PHASE2 | COMPLETED | Safety, Tolerability and Efficacy Study of STX209 in Subjects With Fragile X Syndrome |
| NCT01013480 | PHASE2 | TERMINATED | An Open Label Extension Study of STX209 in Subjects With Fragile X Syndrome |
| NCT01015430 | PHASE2 | COMPLETED | A Study With RO4917523 in Patients With Fragile X Syndrome |
| NCT01120626 | PHASE2 | COMPLETED | Randomized Controlled Study of Donepezil in Fragile X Syndrome |
| NCT01253629 | PHASE2 | COMPLETED | Safety and Efficacy of AFQ056 in Adult Patients With Fragile X Syndrome |
| NCT01254045 | PHASE2 | COMPLETED | Double-blind Placebo Controlled Study of Oxytocin in Fragile X Syndrome |
| NCT01300923 | PHASE2 | COMPLETED | Acamprosate in Youth With Fragile X Syndrome |
| NCT01325740 | PHASE2 | SUSPENDED | A Study to Assess the Tolerability of a Single Dose of STX107 in Adults With Fragile X Syndrome |
| NCT01329770 | PHASE2 | COMPLETED | Safety and Efficacy Study of Antioxidants for the Treatment of the Fragile X Syndrome |
| NCT01348087 | PHASE2 | TERMINATED | Long-term, Safety, Tolerability and Efficacy Study of AFQ056 in Adult Patients With Fragile X Syndrome |
| NCT01357239 | PHASE2 | COMPLETED | Safety and Efficacy of AFQ056 in Adolescent Patients With Fragile X Syndrome |
| NCT01474746 | PHASE2 | COMPLETED | Trial of Sertraline to Treat Children With Fragile X Syndrome |
| NCT01517698 | PHASE2 | COMPLETED | A Study of RO4917523 in Patients With Fragile X Syndrome |
| NCT01725152 | PHASE2 | COMPLETED | Ganaxolone Treatment in Children With Fragile X Syndrome |
| NCT01750957 | PHASE2 | COMPLETED | A Study of RO4917523 in Pediatric Patients With Fragile X Syndrome |
| NCT01855971 | PHASE2 | COMPLETED | Using Epigallocatechin Gallate (EGCG) and Cognitive Training to Modulate Cognitive Performance in Patients With Fragile X Syndrome (TESFX) |
| NCT01894958 | PHASE2 | COMPLETED | A Safety Study of NNZ-2566 in Patients With Fragile X Syndrome |
| NCT02126995 | PHASE2 | COMPLETED | A 6-week, Study of MG01CI Low Dose and High Dose Compared With Placebo in Adults and Adolescents With Fragile X Syndrome |
| NCT02680379 | PHASE2 | COMPLETED | Combined Treatment of Minocycline and Lovastatin to Treat Individuals With Fragile X Syndrome |
| NCT02920892 | PHASE2 | COMPLETED | AFQ056 for Language Learning in Children With FXS |
| NCT03569631 | PHASE2 | COMPLETED | A 2-Period Crossover Study of BPN14770 in Adults Males With Fragile X Syndrome |
| NCT03697161 | PHASE2 | COMPLETED | A Study of OV101 in Individuals With Fragile X Syndrome |
| NCT03722290 | PHASE2 | COMPLETED | Metformin in Children and Adults With Fragile X Syndrome |
| NCT03862950 | PHASE2 | COMPLETED | A Trial of Metformin in Individuals With Fragile X Syndrome (Met) |
| NCT04823052 | PHASE2 | WITHDRAWN | Investigation of Sulindac (HLX-0201) and Gaboxadol (HLX-0206) in Male Fragile X Syndrome Patients Aged 13-40 |
| NCT05030129 | PHASE2 | COMPLETED | ERG/5-HTP in Fragile X Syndrome (FXS) |
| NCT05418049 | PHASE2 | ACTIVE_NOT_RECRUITING | Evaluating the Neurophysiologic and Clinical Effects of Single Dose Drug Challenge |
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): fragile X syndrome, Huntington disease, ovarian carcinoma