ADGRG4
geneOn this page
Also known as RP1-299I16PGR17
Summary
ADGRG4 (adhesion G protein-coupled receptor G4, HGNC:18992) is a protein-coding gene on chromosome Xq26.3, encoding Adhesion G-protein coupled receptor G4 (Q8IZF6). Orphan adhesion G-protein coupled receptor (aGPCR).
This gene encodes a G-protein coupled receptor belonging to a large family of diverse integral membrane proteins that participate in various physiological functions. Members of this superfamily are characterized by a signature 7-transmembrane domain motif. The ligand for this family member is unknown, and it is therefore an orphan receptor. This receptor is known to be expressed in normal enterochromaffin cells and in gastrointestinal neuroendocrine carcinoma cells, and it is therefore considered to be a novel biomarker or target for immunotherapy.
Source: NCBI Gene 139378 — RefSeq curated summary.
At a glance
- Gene–disease (curated): autism spectrum disorder (Limited, GenCC)
- GWAS associations: 1
- Clinical variants (ClinVar): 466 total — 3 pathogenic, 1 likely-pathogenic
- MANE Select transcript:
NM_153834
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:18992 |
| Approved symbol | ADGRG4 |
| Name | adhesion G protein-coupled receptor G4 |
| Location | Xq26.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | RP1-299I16, PGR17 |
| Ensembl gene | ENSG00000156920 |
| Ensembl biotype | protein_coding |
| OMIM | 301085 |
| Entrez | 139378 |
Gene structure
Transcript identifiers
Ensembl transcripts: 3 — 3 protein_coding
ENST00000370652, ENST00000394141, ENST00000394143
RefSeq mRNA: 1 — MANE Select: NM_153834
NM_153834
CCDS: CCDS35409
Canonical transcript exons
ENST00000394143 — 26 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001029095 | 136399848 | 136400116 |
| ENSE00001029096 | 136397881 | 136398002 |
| ENSE00001029097 | 136393535 | 136393580 |
| ENSE00001029098 | 136392232 | 136392354 |
| ENSE00001029099 | 136403244 | 136403322 |
| ENSE00001029102 | 136395390 | 136395493 |
| ENSE00001251094 | 136414160 | 136414327 |
| ENSE00001251100 | 136405692 | 136405972 |
| ENSE00001251135 | 136372902 | 136373064 |
| ENSE00001251142 | 136371328 | 136371544 |
| ENSE00001251148 | 136363477 | 136363595 |
| ENSE00001251157 | 136361455 | 136361587 |
| ENSE00001251166 | 136344392 | 136350433 |
| ENSE00001453232 | 136412265 | 136412366 |
| ENSE00001453235 | 136387740 | 136387874 |
| ENSE00001453236 | 136359292 | 136359455 |
| ENSE00001453237 | 136357704 | 136357756 |
| ENSE00001453238 | 136356126 | 136356165 |
| ENSE00001453240 | 136353337 | 136353401 |
| ENSE00001453241 | 136351447 | 136351541 |
| ENSE00001517596 | 136304855 | 136305023 |
| ENSE00001517597 | 136304133 | 136304207 |
| ENSE00001517598 | 136300963 | 136301000 |
| ENSE00003535180 | 136322778 | 136323392 |
| ENSE00003584391 | 136308769 | 136308847 |
| ENSE00003891309 | 136416454 | 136416890 |
Expression profiles
Bgee: expression breadth broad, 55 present calls, max score 68.08.
FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0936 / max 54.8273, expressed in 9 samples.
FANTOM5 promoters (1 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 197687 | 0.0936 | 9 |
Top tissues by expression
225 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| buccal mucosa cell | CL:0002336 | 68.08 | gold quality |
| duodenum | UBERON:0002114 | 67.49 | gold quality |
| jejunal mucosa | UBERON:0000399 | 67.16 | gold quality |
| left uterine tube | UBERON:0001303 | 61.92 | gold quality |
| mucosa of stomach | UBERON:0001199 | 60.56 | gold quality |
| jejunum | UBERON:0002115 | 55.05 | gold quality |
| endothelial cell | CL:0000115 | 51.76 | gold quality |
| small intestine | UBERON:0002108 | 51.28 | gold quality |
| small intestine Peyer’s patch | UBERON:0003454 | 49.02 | gold quality |
| fallopian tube | UBERON:0003889 | 46.92 | gold quality |
| calcaneal tendon | UBERON:0003701 | 46.46 | silver quality |
| urinary bladder | UBERON:0001255 | 45.48 | gold quality |
| esophagogastric junction muscularis propria | UBERON:0035841 | 43.86 | gold quality |
| skeletal muscle tissue of rectus abdominis | UBERON:0004511 | 43.37 | gold quality |
| body of uterus | UBERON:0009853 | 43.19 | gold quality |
| right coronary artery | UBERON:0001625 | 43.17 | gold quality |
| secondary oocyte | CL:0000655 | 42.57 | gold quality |
| skeletal muscle tissue | UBERON:0001134 | 42.38 | gold quality |
| muscle tissue | UBERON:0002385 | 42.20 | gold quality |
| skeletal muscle tissue of biceps brachii | UBERON:0004502 | 41.89 | gold quality |
| bone marrow cell | CL:0002092 | 41.79 | gold quality |
| fundus of stomach | UBERON:0001160 | 41.67 | gold quality |
| hindlimb stylopod muscle | UBERON:0004252 | 41.61 | gold quality |
| tibial artery | UBERON:0007610 | 41.48 | gold quality |
| popliteal artery | UBERON:0002250 | 41.46 | gold quality |
| vastus lateralis | UBERON:0001379 | 41.41 | gold quality |
| quadriceps femoris | UBERON:0001377 | 41.37 | gold quality |
| superficial temporal artery | UBERON:0001614 | 41.33 | gold quality |
| oviduct epithelium | UBERON:0004804 | 41.27 | gold quality |
| biceps brachii | UBERON:0001507 | 41.12 | gold quality |
Single-cell (SCXA)
Detected in 2 experiment(s), a significant marker in 2.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 6.65 |
| E-GEOD-125970 | yes | 6.64 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
41 targeting ADGRG4, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-5692A | 100.00 | 74.40 | 6850 |
| HSA-MIR-4760-3P | 99.93 | 70.50 | 2385 |
| HSA-MIR-153-5P | 99.89 | 73.86 | 6317 |
| HSA-MIR-6780A-5P | 99.88 | 66.69 | 2776 |
| HSA-MIR-1273H-5P | 99.77 | 66.32 | 2471 |
| HSA-MIR-6885-3P | 99.75 | 70.36 | 3187 |
| HSA-MIR-4446-5P | 99.72 | 69.19 | 2544 |
| HSA-MIR-30B-3P | 99.70 | 65.76 | 2325 |
| HSA-MIR-3689A-3P | 99.70 | 65.73 | 2306 |
| HSA-MIR-3689B-3P | 99.70 | 65.71 | 2311 |
| HSA-MIR-3689C | 99.70 | 65.71 | 2311 |
| HSA-MIR-6779-5P | 99.70 | 65.76 | 2363 |
| HSA-MIR-587 | 99.64 | 70.86 | 2611 |
| HSA-MIR-6081 | 99.48 | 66.07 | 1446 |
| HSA-MIR-140-5P | 99.44 | 67.20 | 792 |
| HSA-MIR-6513-5P | 99.43 | 67.81 | 1071 |
| HSA-MIR-513A-3P | 99.39 | 70.63 | 3620 |
| HSA-MIR-513C-3P | 99.39 | 70.63 | 3620 |
| HSA-MIR-4460 | 99.37 | 68.52 | 615 |
| HSA-MIR-19A-5P | 99.36 | 66.93 | 1675 |
| HSA-MIR-19B-1-5P | 99.36 | 67.07 | 1669 |
| HSA-MIR-19B-2-5P | 99.36 | 67.07 | 1669 |
| HSA-MIR-4652-3P | 99.33 | 70.02 | 2742 |
| HSA-MIR-5582-5P | 99.27 | 71.42 | 1879 |
| HSA-MIR-329-5P | 99.27 | 68.11 | 1597 |
| HSA-MIR-664A-3P | 99.22 | 71.08 | 2696 |
| HSA-MIR-3606-3P | 99.11 | 69.84 | 3254 |
| HSA-MIR-3675-3P | 99.09 | 67.70 | 968 |
| HSA-MIR-6506-5P | 99.04 | 65.66 | 1386 |
| HSA-MIR-1257 | 98.97 | 68.02 | 1133 |
Literature-anchored findings (GeneRIF, showing 3)
- This study described the structure-function relationship of adhesion G protein-coupled receptors (ADGRs) using ADGRGr as a model receptor. (PMID:26823453)
- The dimerized pentraxin-like domain of the adhesion G protein-coupled receptor 112 (ADGRG4) suggests function in sensing mechanical forces. (PMID:37863265)
- Exome sequencing identifies ADGRG4 G-protein-coupled receptors gene as a novel cancer biomarker in ovarian cancer patients from North India. (PMID:38462741)
Cross-species orthologs
2 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| mus_musculus | Adgrg4 | ENSMUSG00000053852 |
| rattus_norvegicus | ENSRNOG00000079314 |
Paralogs (42): CALCR (ENSG00000004948), GIPR (ENSG00000010310), ADGRA2 (ENSG00000020181), CALCRL (ENSG00000064989), GLP2R (ENSG00000065325), ADGRF5 (ENSG00000069122), ADGRL1 (ENSG00000072071), ADCYAP1R1 (ENSG00000078549), SCTR (ENSG00000080293), VIPR2 (ENSG00000106018), CRHR2 (ENSG00000106113), GHRHR (ENSG00000106128), ADGRD1 (ENSG00000111452), GLP1R (ENSG00000112164), ADGRG6 (ENSG00000112414), VIPR1 (ENSG00000114812), ADGRL2 (ENSG00000117114), CRHR1 (ENSG00000120088), ADGRB2 (ENSG00000121753), ADGRE5 (ENSG00000123146), ADGRE2 (ENSG00000127507), ADGRE3 (ENSG00000131355), ADGRB3 (ENSG00000135298), PTH2R (ENSG00000144407), ADGRG7 (ENSG00000144820), ADGRL3 (ENSG00000150471), ADGRA3 (ENSG00000152990), ADGRF1 (ENSG00000153292), ADGRF4 (ENSG00000153294), ADGRG5 (ENSG00000159618), PTH1R (ENSG00000160801), ADGRL4 (ENSG00000162618), EVA1C (ENSG00000166979), ADGRF3 (ENSG00000173567), ADGRG2 (ENSG00000173698), ADGRE1 (ENSG00000174837), ADGRD2 (ENSG00000180264), ADGRB1 (ENSG00000181790), ADGRG3 (ENSG00000182885), ADGRA1 (ENSG00000197177)
Protein
Protein identifiers
Adhesion G-protein coupled receptor G4 — Q8IZF6 (reviewed: Q8IZF6)
Alternative names: G-protein coupled receptor 112
All UniProt accessions (1): Q8IZF6
UniProt curated annotations — full annotation on UniProt →
Function. Orphan adhesion G-protein coupled receptor (aGPCR). Ligand binding causes a conformation change that triggers signaling via guanine nucleotide-binding proteins (G proteins) and modulates the activity of downstream effectors, such as adenylate cyclase. ADGRG4 is coupled to G(s) G proteins and mediates activation of adenylate cyclase activity. May be act as sensor of mechanical forces.
Subunit / interactions. Homodimer; homodimerizes via its Pentraxin domain in a calcium-independent manner. Heterodimer of 2 chains generated by proteolytic processing; the large extracellular N-terminal fragment and the membrane-bound C-terminal fragment predominantly remain associated and non-covalently linked.
Subcellular location. Membrane.
Tissue specificity. Detected in fetal retina. Highly expressed in normal enterochromaffin cells and in neuroendocrine carcinoma. Detected in normal liver; highly expressed in primary liver carcinoma.
Post-translational modifications. Autoproteolytically processed at the GPS region of the GAIN-B domain; this cleavage modulates receptor activity. N-glycosylated.
Activity regulation. Forms a heterodimer of 2 chains generated by proteolytic processing that remain associated through non-covalent interactions mediated by the GAIN-B domain. In the inactivated receptor, the Stachel sequence (also named stalk) is embedded in the GAIN-B domain, where it adopts a beta-strand conformation. On activation, the Stachel moves into the 7 transmembrane region and adopts a twisted hook-shaped configuration that forms contacts within the receptor, leading to coupling of a G-alpha protein, which activates signaling. The cleaved GAIN-B and N-terminal domains can then dissociate from the rest of the receptor.
Domain organisation. The Stachel sequence (also named stalk) in the C-terminal part of the extracellular domain (ECD) functions as a tethered agonist. In the inactivated receptor, the Stachel sequence (also named stalk) is embedded in the GAIN-B domain, where it adopts a beta-strand conformation. On activation, the Stachel moves into the 7 transmembrane region and adopts a twisted hook-shaped configuration that forms contacts within the receptor, leading to coupling of a G-alpha protein, which activates signaling.
Similarity. Belongs to the G-protein coupled receptor 2 family. Adhesion G-protein coupled receptor (ADGR) subfamily.
Isoforms (3)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q8IZF6-1 | 1 | yes |
| Q8IZF6-2 | 2 | |
| Q8IZF6-3 | 3 |
RefSeq proteins (1): NP_722576* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000203 | GPS | Conserved_site |
| IPR000832 | GPCR_2_secretin-like | Family |
| IPR001759 | PTX_dom | Domain |
| IPR013320 | ConA-like_dom_sf | Homologous_superfamily |
| IPR017981 | GPCR_2-like_7TM | Domain |
| IPR017983 | GPCR_2_secretin-like_CS | Conserved_site |
| IPR036445 | GPCR_2_extracell_dom_sf | Homologous_superfamily |
| IPR046338 | GAIN_dom_sf | Homologous_superfamily |
| IPR057244 | GAIN_B | Domain |
Pfam: PF00002, PF00354, PF01825
UniProt features (115 total): helix 18, strand 15, mutagenesis site 10, topological domain 8, glycosylation site 8, turn 7, transmembrane region 7, splice variant 7, region of interest 6, compositionally biased region 6, disulfide bond 5, sequence variant 5, sequence conflict 5, chain 3, domain 2, signal peptide 1, binding site 1, site 1
Structure
Experimental structures (PDB)
2 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 8B55 | X-RAY DIFFRACTION | 1.36 |
| 7WUJ | ELECTRON MICROSCOPY | 3.3 |
Predicted structure (AlphaFold)
No AlphaFold model available for Q8IZF6 — AlphaFold DB does not currently provide models for proteins above ~3000 aa.
Antibody-complex structures (SAbDab): 1 — 7WUJ
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (1): 2721–2722 (cleavage; by autolysis)
Ligand- & substrate-binding residues (1): 202
Disulfide bonds (5): 58–123, 200–228, 2685–2716, 2704–2718, 2809–2886
Glycosylation sites (8): 233, 487, 836, 899, 1020, 1519, 2361, 2640
Mutagenesis-validated functional residues (10):
| Position | Phenotype |
|---|---|
| 2660 | increased basal g protein-coupled receptor activity. |
| 2671 | increased basal g protein-coupled receptor activity. |
| 2683 | increased basal g protein-coupled receptor activity. |
| 2747 | strongly decreased g protein-coupled receptor activity. |
| 2794 | strongly decreased g protein-coupled receptor activity. |
| 2820 | decreased g protein-coupled receptor activity. |
| 2885 | strongly decreased g protein-coupled receptor activity. |
| 2953 | strongly decreased g protein-coupled receptor activity. |
| 2957 | strongly decreased g protein-coupled receptor activity. |
| 2971 | strongly decreased g protein-coupled receptor activity. |
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 44 (showing top):
WWTAAGGC_UNKNOWN, CMYB_01, CAGCTG_AP4_Q5, SRF_Q5_01, GOBP_ADENYLATE_CYCLASE_MODULATING_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY, SRF_C, WTGAAAT_UNKNOWN, TGANTCA_AP1_C, TGACATY_UNKNOWN, MYB_Q5_01, GOBP_ADENYLATE_CYCLASE_ACTIVATING_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY, GOMF_TRANSMEMBRANE_SIGNALING_RECEPTOR_ACTIVITY, MYB_Q6, GOMF_G_PROTEIN_COUPLED_RECEPTOR_ACTIVITY, chrXq26
GO Biological Process (4): cell surface receptor signaling pathway (GO:0007166), G protein-coupled receptor signaling pathway (GO:0007186), adenylate cyclase-activating G protein-coupled receptor signaling pathway (GO:0007189), signal transduction (GO:0007165)
GO Molecular Function (2): G protein-coupled receptor activity (GO:0004930), transmembrane signaling receptor activity (GO:0004888)
GO Cellular Component (2): plasma membrane (GO:0005886), membrane (GO:0016020)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| signal transduction | 2 |
| G protein-coupled receptor activity | 1 |
| adenylate cyclase-modulating G protein-coupled receptor signaling pathway | 1 |
| adenylate cyclase activator activity | 1 |
| cell communication | 1 |
| cellular process | 1 |
| signaling | 1 |
| regulation of cellular process | 1 |
| cellular response to stimulus | 1 |
| transmembrane signaling receptor activity | 1 |
| G protein-coupled receptor signaling pathway | 1 |
| signaling receptor activity | 1 |
| membrane | 1 |
| cell periphery | 1 |
| cellular anatomical structure | 1 |
Protein interactions and networks
STRING
754 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| ADGRG4 | OR4X2 | Q8NGF9 | 488 |
| ADGRG4 | GEMIN8 | Q9NWZ8 | 392 |
| ADGRG4 | OR51E1 | Q8TCB6 | 370 |
| ADGRG4 | ADGRG7 | Q96K78 | 367 |
| ADGRG4 | SLC6A18 | Q96N87 | 364 |
| ADGRG4 | ADGRF2P | Q8IZF7 | 358 |
| ADGRG4 | ADGRF3 | Q8IZF5 | 354 |
| ADGRG4 | ADGRA1 | Q86SQ6 | 351 |
| ADGRG4 | ADGRD1 | Q6QNK2 | 351 |
| ADGRG4 | TBC1D3D | A0A087WVF3 | 350 |
| ADGRG4 | ADGRG5 | Q8IZF4 | 339 |
| ADGRG4 | ADGRF4 | Q8IZF3 | 335 |
| ADGRG4 | ADGRF1 | Q5T601 | 333 |
| ADGRG4 | ADGRA3 | Q8IWK6 | 320 |
| ADGRG4 | SERPINA10 | Q9UK55 | 314 |
IntAct
3 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| ADGRG4 | H2BC9 | psi-mi:“MI:0915”(physical association) | 0.400 |
| P | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (11): HIST1H2BH (Proximity Label-MS), GPR112 (Affinity Capture-MS), GPR112 (Affinity Capture-RNA), GPR112 (Affinity Capture-RNA), GPR112 (Affinity Capture-MS), GPR112 (Cross-Linking-MS (XL-MS)), GPR112 (Cross-Linking-MS (XL-MS)), GPR112 (Affinity Capture-MS), GPR112 (Affinity Capture-RNA), GPR112 (Affinity Capture-RNA), GPR112 (Affinity Capture-MS)
ESM2 similar proteins: A0JPP4, B7ZCC9, B9EKR1, E9Q7X6, J3KML8, O00592, O57604, P13611, P23471, P30005, P34910, P52549, P70628, Q01036, Q06093, Q1XI86, Q28858, Q2TA21, Q2TBJ9, Q3MIW9, Q3TNW5, Q3TYV2, Q5XI99, Q62059, Q62656, Q62781, Q68FD9, Q69558, Q6MG22, Q6R8J2, Q7TST5, Q80XH2, Q86TY3, Q8BT18, Q8BUE7, Q8C633, Q8IZF6, Q8N3K9, Q8VD58, Q8WXI7
Diamond homologs: B7ZCC9, C6KFA3, G5ECX0, G5EDW2, O88917, O94910, O97817, O97827, O97831, Q2Q421, Q2Q426, Q3V3Z3, Q50DM5, Q50DM6, Q50DM7, Q50DM8, Q6F3F9, Q6QNK2, Q7SY09, Q80TR1, Q80TS3, Q86SQ3, Q86SQ4, Q86Y34, Q8CJ11, Q8CJ12, Q8IZF4, Q8IZF6, Q8IZP9, Q8JZZ7, Q8K209, Q8SQA4, Q923X1, Q9BY15, Q9ESC1, Q9HAR2, Q9HBW9, Q9HCU4, Q9QYP2, Q9R0M0
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
466 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 3 |
| Likely pathogenic | 1 |
| Uncertain significance | 336 |
| Likely benign | 49 |
| Benign | 2 |
Top pathogenic / likely-pathogenic (4)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1458589 | NC_000023.10:g.(?135067662)(136652229_?)del | Pathogenic |
| 2685720 | GRCh37/hg19 Xq26.1-26.3(chrX:129627661-135812056)x1 | Pathogenic |
| 57989 | GRCh38/hg38 Xq26.3(chrX:136121668-136310367)x1 | Pathogenic |
| 152215 | GRCh38/hg38 Xq26.2-26.3(chrX:133532321-137519462)x2 | Likely pathogenic |
SpliceAI
3907 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| X:136322766:A:AG | acceptor_gain | 1.0000 |
| X:136322767:A:G | acceptor_gain | 1.0000 |
| X:136351445:A:AG | acceptor_gain | 1.0000 |
| X:136351446:G:GG | acceptor_gain | 1.0000 |
| X:136357702:A:AG | acceptor_gain | 1.0000 |
| X:136357703:G:GG | acceptor_gain | 1.0000 |
| X:136359291:GTT:G | acceptor_gain | 1.0000 |
| X:136359291:GTTGT:G | acceptor_gain | 1.0000 |
| X:136361451:GTAG:G | acceptor_loss | 1.0000 |
| X:136361452:TA:T | acceptor_loss | 1.0000 |
| X:136361453:A:AC | acceptor_loss | 1.0000 |
| X:136361453:A:AG | acceptor_gain | 1.0000 |
| X:136361454:G:A | acceptor_loss | 1.0000 |
| X:136361454:G:GA | acceptor_gain | 1.0000 |
| X:136361454:GA:G | acceptor_gain | 1.0000 |
| X:136361454:GAGC:G | acceptor_gain | 1.0000 |
| X:136361588:G:GG | donor_gain | 1.0000 |
| X:136363475:A:AG | acceptor_gain | 1.0000 |
| X:136363476:G:GG | acceptor_gain | 1.0000 |
| X:136392226:CTGCA:C | acceptor_loss | 1.0000 |
| X:136392227:TGCA:T | acceptor_loss | 1.0000 |
| X:136392228:GCA:G | acceptor_loss | 1.0000 |
| X:136392229:CAGAC:C | acceptor_loss | 1.0000 |
| X:136392230:A:AG | acceptor_gain | 1.0000 |
| X:136392230:AGACC:A | acceptor_loss | 1.0000 |
| X:136392231:G:GA | acceptor_gain | 1.0000 |
| X:136392231:GA:G | acceptor_gain | 1.0000 |
| X:136392231:GACC:G | acceptor_gain | 1.0000 |
| X:136392231:GACCA:G | acceptor_gain | 1.0000 |
| X:136392350:ACCAG:A | donor_loss | 1.0000 |
AlphaMissense
0 scored. Top likely-pathogenic:
dbSNP variants (sampled 300 via entrez): RS1000030419 (X:136373484 A>G), RS1000041487 (X:136311897 G>A), RS1000067605 (X:136408604 T>C), RS1000144040 (X:136373989 A>C,G), RS1000155684 (X:136311370 T>C), RS1000161928 (X:136397233 G>A), RS1000199478 (X:136318190 A>G), RS1000200357 (X:136313939 G>A), RS1000256347 (X:136383736 G>A), RS1000261285 (X:136363428 T>G), RS1000276899 (X:136397753 C>A,T), RS1000312659 (X:136304454 G>A,C), RS1000321697 (X:136323682 C>G), RS1000337815 (X:136365266 C>T), RS1000367404 (X:136408127 TG>T)
Disease associations
OMIM: gene MIM:301085 | disease phenotypes: MIM:300243, MIM:306955, MIM:308230
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| autism spectrum disorder | Limited | Autosomal dominant |
Mondo (4): Christianson syndrome (MONDO:0010278), heterotaxy, visceral, 1, X-linked (MONDO:0010607), hyper-IgM syndrome type 1 (MONDO:0010626), autism spectrum disorder (MONDO:0005258)
Orphanet (3): X-linked hyper-IgM syndrome (Orphanet:101088), Visceral heterotaxy (Orphanet:450), Christianson syndrome (Orphanet:85278)
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
1 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST006442_461 | Educational attainment (years of education) | 2.000000e-08 |
EFO canonical traits (1, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004784 | self reported educational attainment |
MeSH disease descriptors (2)
| Descriptor | Name | Tree numbers |
|---|---|---|
| C538116 | Heterotaxy, visceral, X-linked (supp.) | |
| C567484 | Mental Retardation, X-Linked, Syndromic, Christianson Type (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
GtoPdb / IUPHAR curated pharmacology
(IUPHAR/BPS Guide to Pharmacology — expert-curated)
Target class: gpcr — Adhesion Class GPCRs
CTD chemical–gene interactions
9 total (human), top 9 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Benzo(a)pyrene | affects methylation, decreases methylation, increases methylation | 2 |
| sodium arsenite | increases expression | 1 |
| Acetaminophen | increases expression | 1 |
| Arsenic | affects methylation | 1 |
| Atrazine | increases expression | 1 |
| Quercetin | decreases expression | 1 |
| Thiram | increases expression | 1 |
| Aflatoxin B1 | increases methylation | 1 |
| Antirheumatic Agents | decreases expression | 1 |
Clinical trials (associated diseases)
304 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00391261 | PHASE4 | COMPLETED | An Open-label Trial of Metformin for Weight Control of Pediatric Patients on Antipsychotic Medications. |
| NCT01028820 | PHASE4 | COMPLETED | FMRI Brain Activation of Aripiprazole Treatment in Autism Spectrum Disorders |
| NCT01333865 | PHASE4 | COMPLETED | A Study of Memantine Hydrochloride (Namenda®) for Cognitive and Behavioral Impairment in Adults With Autism Spectrum Disorders |
| NCT01337700 | PHASE4 | COMPLETED | Milnacipran in Autism and the Functional Locus Coeruleus and Noradrenergic Model of Autism |
| NCT01695200 | PHASE4 | COMPLETED | Omega-3 Fatty Acids in Autism Spectrum Disorders |
| NCT02096952 | PHASE4 | COMPLETED | Methylphenidate ER Liquid Formulation in Adults With ASD and ADHD |
| NCT02235467 | PHASE4 | COMPLETED | Multisite Study: Parental Training Using Video Modelling to Develop Social Skills in Children With Autism |
| NCT02940574 | PHASE4 | COMPLETED | Neural and Behavioral Effects of Oxytocin in Autism Spectrum Disorders |
| NCT03333629 | PHASE4 | COMPLETED | Promoting Positive Outcomes for Individuals With ASD: Linking Early Detection, Treatment, and Long-term Outcomes |
| NCT03337646 | PHASE4 | COMPLETED | Evaluation of the Effect and Safety of Lisdexamfetamine in Children Aged 6-12 With ADHD and Autism |
| NCT03538431 | PHASE4 | COMPLETED | Improving Driving in Young People With Autism Spectrum Disorders |
| NCT03757585 | PHASE4 | COMPLETED | Natural Treatments for the Management of Emotional Dysregulation in Youth With Non-verbal Learning Disability (NVLD) and/or Autism Spectrum Disorders (ASD) |
| NCT04903353 | PHASE4 | COMPLETED | Pragmatic Trial Comparing Weight Gain in Children With Autism Taking Risperidone Versus Aripiprazole |
| NCT05063656 | PHASE4 | COMPLETED | Biomarker-Driven Pharmacological Treatment of Adolescents With Autism Spectrum Disorder With Gabapentin |
| NCT05146245 | PHASE4 | UNKNOWN | Safety and Pharmacokinetics of Antipsychotics in Children 2: Studying TDM in an RCT |
| NCT05916339 | PHASE4 | RECRUITING | AWARE: Management of ADHD in Autism Spectrum Disorder |
| NCT05954052 | PHASE4 | TERMINATED | A Study of Glutathione in Children With Autism Spectrum Disorder |
| NCT06853665 | PHASE4 | RECRUITING | The TEAM Study - Treatment Efficacy for Autism/Attention Using Mixed Amphetamine |
| NCT07054697 | PHASE4 | COMPLETED | Pilot-RCT With Individualized Homeopathic Treatment in the Children With Autism Spectrum Disorder |
| NCT07161804 | PHASE4 | COMPLETED | Pilot RCT Using Homeopathic Medicines in ASD |
| NCT07439042 | PHASE4 | NOT_YET_RECRUITING | Buspirone for Anxiety in Autistic Youth |
| NCT01302964 | PHASE3 | COMPLETED | Mirtazapine Treatment of Anxiety in Children and Adolescents With Pervasive Developmental Disorders |
| NCT01706523 | PHASE3 | TERMINATED | Open Label Extension Study of STX209 (Arbaclofen) in Autism Spectrum Disorders |
| NCT01825798 | PHASE3 | COMPLETED | Treatment of Overweight Induced by Antipsychotic Medication in Young People With Autism Spectrum Disorders (ASD) |
| NCT01972074 | PHASE3 | COMPLETED | Behavioral and Neural Response to Memantine in Adolescents With Autism Spectrum Disorder |
| NCT02985749 | PHASE3 | COMPLETED | A Study of Oxytocin for the Treatment of Social Impairment in Individuals With High Functioning Autism Spectrum Disorder |
| NCT03197922 | PHASE3 | COMPLETED | Treatment of Encopresis in Children With Autism Spectrum Disorders |
| NCT03504917 | PHASE3 | TERMINATED | A Study of Balovaptan in Adults With Autism Spectrum Disorder With a 2-Year Open-Label Extension |
| NCT03553875 | PHASE3 | TERMINATED | Memantine for the Treatment of Social Deficits in Youth With Disorders of Impaired Social Interactions |
| NCT03640156 | PHASE3 | COMPLETED | Modulating Socially Adaptive Mirror System Functioning in Autism by Oxytocin |
| NCT03715153 | PHASE3 | TERMINATED | Efficacy and Safety of Bumetanide Oral Liquid Formulation in Children Aged From 2 to Less Than 7 Years Old With Autism Spectrum Disorder. |
| NCT03715166 | PHASE3 | TERMINATED | Efficacy and Safety of Bumetanide Oral Liquid Formulation in Children and Adolescents Aged From 7 to Less Than 18 Years Old With Autism Spectrum Disorder |
| NCT04233502 | PHASE3 | WITHDRAWN | Efficacy and Safety of Slenyto for Insomnia in Children With ASD |
| NCT04578756 | PHASE3 | COMPLETED | Open-Label, Flexible-dose Study to Evaluate the Long-Term Safety and Tolerability of Cariprazine in the Treatment of Pediatric Participants With Schizophrenia, Bipolar I Disorder, or Autism Spectrum Disorder |
| NCT04623398 | PHASE3 | COMPLETED | Effect of Lithium in Patients With Autism Spectrum Disorder and Phelan-McDermid Syndrome (SHANK3 Haploinsufficiency) |
| NCT04725383 | PHASE3 | TERMINATED | Amitriptyline for Repetitive Behaviors in Autism Spectrum Disorders |
| NCT05212493 | PHASE3 | COMPLETED | The Effects of Medical Cannabis in Children With Autistic Spectrum Disorder |
| NCT05361707 | PHASE3 | UNKNOWN | Evaluating the Effects of Tasimelteon in Individuals With Autism Spectrum Disorder (ASD) and Sleep Disturbances |
| NCT05439616 | PHASE3 | COMPLETED | Study of Cariprazine Oral Capsules or Solution to Assess Adverse Events and Change in Irritability Due to Autism Spectrum Disorder (ASD) in Participants Aged 5-17 Years With ASD |
| NCT06229210 | PHASE3 | RECRUITING | Safety and Tolerability Trial of Lumateperone in Pediatric Patients With Schizophrenia, Bipolar Disorder or Autism Spectrum Disorder |
Related Atlas pages
- Associated diseases: autism spectrum disorder
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): autism spectrum disorder, Christianson syndrome, heterotaxy, visceral, 1, X-linked, hyper-IgM syndrome type 1