ADNP2
gene geneOn this page
Also known as KIAA0863
Summary
ADNP2 (ADNP homeobox 2, HGNC:23803) is a protein-coding gene on chromosome 18q23, encoding Activity-dependent neuroprotector homeobox protein 2 (Q6IQ32). May be involved in transcriptional regulation.
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific. Predicted to be involved in nervous system development and regulation of gene expression. Predicted to be located in chromatin. Predicted to be active in nucleus.
Source: NCBI Gene 22850 — RefSeq curated summary.
At a glance
- Clinical variants (ClinVar): 291 total — 88 pathogenic, 3 likely-pathogenic
- MANE Select transcript:
NM_014913
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:23803 |
| Approved symbol | ADNP2 |
| Name | ADNP homeobox 2 |
| Location | 18q23 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | KIAA0863 |
| Ensembl gene | ENSG00000101544 |
| Ensembl biotype | protein_coding |
| OMIM | 617422 |
| Entrez | 22850 |
Gene structure
Transcript identifiers
Ensembl transcripts: 9 — 9 protein_coding
ENST00000262198, ENST00000559951, ENST00000560561, ENST00000560752, ENST00000561195, ENST00000929371, ENST00000929372, ENST00000929373, ENST00000929374
RefSeq mRNA: 1 — MANE Select: NM_014913
NM_014913
CCDS: CCDS32853
Canonical transcript exons
ENST00000262198 — 4 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001273396 | 80109262 | 80109472 |
| ENSE00001273418 | 80117530 | 80117650 |
| ENSE00001305079 | 80135612 | 80140346 |
| ENSE00002936676 | 80133103 | 80133192 |
Expression profiles
Bgee: expression breadth ubiquitous, 282 present calls, max score 95.23.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 9.5442 / max 100.8374, expressed in 1755 samples.
FANTOM5 promoters (4 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 170924 | 7.6331 | 1737 |
| 170923 | 0.8790 | 614 |
| 170925 | 0.8336 | 494 |
| 208616 | 0.1986 | 77 |
Top tissues by expression
297 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| secondary oocyte | CL:0000655 | 95.23 | gold quality |
| cauda epididymis | UBERON:0004360 | 92.59 | gold quality |
| corpus epididymis | UBERON:0004359 | 92.28 | gold quality |
| caput epididymis | UBERON:0004358 | 91.73 | gold quality |
| nipple | UBERON:0002030 | 90.88 | gold quality |
| buccal mucosa cell | CL:0002336 | 90.59 | gold quality |
| pigmented layer of retina | UBERON:0001782 | 90.31 | gold quality |
| retina | UBERON:0000966 | 90.28 | gold quality |
| cartilage tissue | UBERON:0002418 | 90.01 | gold quality |
| amniotic fluid | UBERON:0000173 | 89.88 | gold quality |
| oocyte | CL:0000023 | 89.81 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 89.22 | gold quality |
| esophagus squamous epithelium | UBERON:0006920 | 87.91 | gold quality |
| upper leg skin | UBERON:0004262 | 87.49 | gold quality |
| hair follicle | UBERON:0002073 | 87.17 | silver quality |
| cranial nerve II | UBERON:0000941 | 86.76 | gold quality |
| jejunal mucosa | UBERON:0000399 | 86.64 | gold quality |
| epithelium of esophagus | UBERON:0001976 | 86.55 | gold quality |
| eye | UBERON:0000970 | 86.31 | gold quality |
| oral cavity | UBERON:0000167 | 86.28 | gold quality |
| squamous epithelium | UBERON:0006914 | 85.89 | gold quality |
| right testis | UBERON:0004534 | 85.80 | gold quality |
| embryo | UBERON:0000922 | 85.71 | gold quality |
| testis | UBERON:0000473 | 85.47 | gold quality |
| tibia | UBERON:0000979 | 85.36 | gold quality |
| penis | UBERON:0000989 | 85.26 | gold quality |
| tongue squamous epithelium | UBERON:0006919 | 85.23 | silver quality |
| choroid plexus epithelium | UBERON:0003911 | 85.22 | gold quality |
| epithelium of mammary gland | UBERON:0003244 | 85.14 | gold quality |
| palpebral conjunctiva | UBERON:0001812 | 85.00 | gold quality |
Single-cell (SCXA)
Detected in 2 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 5.42 |
| E-GEOD-36552 | no | 273.96 |
Regulation
Is transcription factor: yes
Downstream targets (CollecTRI)
1 targets.
| Target | Regulation |
|---|---|
| HBB |
miRNA regulators (miRDB)
77 targeting ADNP2, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4668-3P | 100.00 | 68.74 | 2635 |
| HSA-MIR-5696 | 99.98 | 72.36 | 4487 |
| HSA-MIR-4482-3P | 99.98 | 72.50 | 3147 |
| HSA-MIR-520D-5P | 99.98 | 73.34 | 4883 |
| HSA-MIR-524-5P | 99.98 | 73.43 | 4882 |
| HSA-MIR-548AN | 99.97 | 70.91 | 2817 |
| HSA-MIR-302C-5P | 99.97 | 72.56 | 3642 |
| HSA-MIR-570-3P | 99.96 | 72.41 | 4910 |
| HSA-MIR-551B-5P | 99.96 | 71.28 | 3493 |
| HSA-MIR-590-3P | 99.96 | 74.34 | 6478 |
| HSA-MIR-497-5P | 99.92 | 71.83 | 2674 |
| HSA-MIR-7-1-3P | 99.91 | 71.53 | 4384 |
| HSA-MIR-7-2-3P | 99.91 | 71.40 | 4394 |
| HSA-MIR-10527-5P | 99.91 | 72.28 | 3754 |
| HSA-MIR-15A-5P | 99.90 | 72.80 | 2787 |
| HSA-MIR-15B-5P | 99.90 | 72.78 | 2798 |
| HSA-MIR-16-5P | 99.90 | 72.80 | 2780 |
| HSA-MIR-195-5P | 99.90 | 72.81 | 2805 |
| HSA-MIR-124-3P | 99.89 | 73.74 | 3043 |
| HSA-MIR-506-3P | 99.89 | 73.55 | 3057 |
| HSA-MIR-424-5P | 99.89 | 71.90 | 2641 |
| HSA-MIR-6838-5P | 99.89 | 71.94 | 2690 |
| HSA-MIR-548E-5P | 99.89 | 72.73 | 4486 |
| HSA-MIR-544A | 99.84 | 68.66 | 1965 |
| HSA-MIR-4799-5P | 99.82 | 70.60 | 2663 |
| HSA-MIR-4668-5P | 99.79 | 70.58 | 3782 |
| HSA-MIR-4517 | 99.76 | 69.19 | 1867 |
| HSA-MIR-200A-5P | 99.76 | 69.10 | 949 |
| HSA-MIR-200B-5P | 99.76 | 69.05 | 948 |
| HSA-MIR-1200 | 99.71 | 70.42 | 1838 |
Literature-anchored findings (GeneRIF, showing 2)
- In the prefrontal cortex of schizophrenia patients the correlation between ADNP and ADNP2 mRNA levels was apparently higher than in the hippocampus (r=0.854, p<0.001), but did not reach a significant difference (p=0.25). (PMID:20598862)
- This study showed ADNP2 that deregulated in postmortem hippocampal samples from schizophrenia patients, but that now showed a significantly increased expression in lymphocytes from related patients. (PMID:24365867)
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | adnp2b | ENSDARG00000028431 |
| danio_rerio | adnp2a | ENSDARG00000060937 |
| mus_musculus | Adnp2 | ENSMUSG00000053950 |
| rattus_norvegicus | Adnp2 | ENSRNOG00000053370 |
| rattus_norvegicus | Adnp2l1 | ENSRNOG00000053843 |
Paralogs (1): ADNP (ENSG00000101126)
Protein
Protein identifiers
Activity-dependent neuroprotector homeobox protein 2 — Q6IQ32 (reviewed: Q6IQ32)
Alternative names: Zinc finger protein 508
All UniProt accessions (5): Q6IQ32, H0YLN6, H0YM09, K7EPG1, K7ERT3
UniProt curated annotations — full annotation on UniProt →
Function. May be involved in transcriptional regulation. May play a role in neuronal function; perhaps involved in protection of brain tissues from oxidative stress. May be involved in erythroid differentiation.
Subunit / interactions. May interact with SMARCA4/BRG1.
Subcellular location. Nucleus.
Similarity. Belongs to the krueppel C2H2-type zinc-finger protein family.
RefSeq proteins (1): NP_055728* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001356 | HD | Domain |
| IPR009057 | Homeodomain-like_sf | Homologous_superfamily |
| IPR013087 | Znf_C2H2_type | Domain |
| IPR038861 | ADNP/ADNP2 | Family |
| IPR045762 | ADNP_Znf | Domain |
Pfam: PF19627
UniProt features (21 total): zinc finger region 9, cross-link 6, chain 1, DNA-binding region 1, region of interest 1, compositionally biased region 1, modified residue 1, sequence conflict 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q6IQ32-F1 | 58.42 | 0.08 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (7): 1024, 118, 146, 979, 1018, 1032, 1032
Function
Pathways and Gene Ontology
Reactome pathways
1 pathways
| ID | Pathway |
|---|---|
| R-HSA-9940465 | ChAHP complex assembly |
MSigDB gene sets: 145 (showing top):
GGGTGGRR_PAX4_03, PUJANA_CHEK2_PCC_NETWORK, GTGCCTT_MIR506, MODULE_331, OSWALD_HEMATOPOIETIC_STEM_CELL_IN_COLLAGEN_GEL_UP, SCHAEFFER_PROSTATE_DEVELOPMENT_6HR_DN, OCT1_06, MODULE_123, CREB_Q2_01, DODD_NASOPHARYNGEAL_CARCINOMA_UP, MODULE_98, OCT1_B, MILI_PSEUDOPODIA_CHEMOTAXIS_DN, CREBP1CJUN_01, OSMAN_BLADDER_CANCER_DN
GO Biological Process (3): nervous system development (GO:0007399), regulation of gene expression (GO:0010468), regulation of transcription by RNA polymerase II (GO:0006357)
GO Molecular Function (5): DNA-binding transcription factor activity, RNA polymerase II-specific (GO:0000981), DNA binding (GO:0003677), zinc ion binding (GO:0008270), protein binding (GO:0005515), metal ion binding (GO:0046872)
GO Cellular Component (2): chromatin (GO:0000785), nucleus (GO:0005634)
Reactome top-level categories
Rollup of top-1 pathways:
| Category | Pathways |
|---|---|
| CHD3, CHD4, CHD5 subfamily | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| system development | 1 |
| gene expression | 1 |
| regulation of macromolecule biosynthetic process | 1 |
| regulation of DNA-templated transcription | 1 |
| transcription by RNA polymerase II | 1 |
| chromatin | 1 |
| RNA polymerase II transcription regulatory region sequence-specific DNA binding | 1 |
| DNA-binding transcription factor activity | 1 |
| regulation of transcription by RNA polymerase II | 1 |
| nucleic acid binding | 1 |
| transition metal ion binding | 1 |
| binding | 1 |
| cation binding | 1 |
| chromosome | 1 |
| cellular anatomical structure | 1 |
| intracellular membrane-bounded organelle | 1 |
Protein interactions and networks
STRING
634 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| ADNP2 | ZNF407 | Q9C0G0 | 528 |
| ADNP2 | RRP36 | Q96EU6 | 516 |
| ADNP2 | SLC66A2 | Q8N2U9 | 487 |
| ADNP2 | PARD6G | Q9BYG4 | 460 |
| ADNP2 | ABCF3 | Q9NUQ8 | 458 |
| ADNP2 | ZNF280C | Q8ND82 | 456 |
| ADNP2 | CCDC70 | Q6NSX1 | 445 |
| ADNP2 | PLAGL2 | Q9UPG8 | 431 |
| ADNP2 | KCNG2 | Q9UJ96 | 431 |
| ADNP2 | AHCTF1 | Q8WYP5 | 424 |
| ADNP2 | TMPO | P08918 | 420 |
| ADNP2 | MAP6 | Q96JE9 | 395 |
| ADNP2 | CCNC | P24863 | 393 |
| ADNP2 | SMARCE1 | Q969G3 | 390 |
| ADNP2 | Q3MI93 | Q3MI93 | 378 |
| ADNP2 | MPHOSPH8 | Q99549 | 378 |
IntAct
39 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| ADNP2 | CBX1 | psi-mi:“MI:0915”(physical association) | 0.820 |
| CBX3 | ADNP2 | psi-mi:“MI:0915”(physical association) | 0.810 |
| KPNA1 | TCERG1 | psi-mi:“MI:0914”(association) | 0.640 |
| CBX1 | ZNF292 | psi-mi:“MI:0914”(association) | 0.530 |
| CBX1 | KPNA3 | psi-mi:“MI:0914”(association) | 0.530 |
| ZNRD2 | CCDC85C | psi-mi:“MI:0914”(association) | 0.530 |
| Kif1c | ABLIM1 | psi-mi:“MI:0914”(association) | 0.350 |
| Cbx1 | psi-mi:“MI:0914”(association) | 0.350 | |
| Cobll1 | ABLIM1 | psi-mi:“MI:0914”(association) | 0.350 |
| ITPKB | PDE4A | psi-mi:“MI:0914”(association) | 0.350 |
| MYEF2 | PRMT5 | psi-mi:“MI:0914”(association) | 0.350 |
| Ppp2r5c | ELL2 | psi-mi:“MI:0914”(association) | 0.350 |
| Ppp2r2d | KLF4 | psi-mi:“MI:0914”(association) | 0.350 |
| CBX1 | EXOC5 | psi-mi:“MI:0914”(association) | 0.350 |
| NCKAP1 | ENAH | psi-mi:“MI:0914”(association) | 0.350 |
| MAD2L1 | MED19 | psi-mi:“MI:0914”(association) | 0.350 |
| PIPSL | C1orf226 | psi-mi:“MI:0914”(association) | 0.350 |
| FTL | SH3PXD2B | psi-mi:“MI:0914”(association) | 0.350 |
| PRPS2 | SMCHD1 | psi-mi:“MI:0914”(association) | 0.350 |
| CBX3 | ZNF324 | psi-mi:“MI:0914”(association) | 0.350 |
| ADNP2 | GLI4 | psi-mi:“MI:0914”(association) | 0.350 |
| CBX3 | MYL12B | psi-mi:“MI:0914”(association) | 0.350 |
| SOX7 | NFIB | psi-mi:“MI:2364”(proximity) | 0.270 |
| SRF | ZNF292 | psi-mi:“MI:2364”(proximity) | 0.270 |
| ZMYM2 | ZBTB5 | psi-mi:“MI:2364”(proximity) | 0.270 |
| ZMYM2 | TRIM24 | psi-mi:“MI:2364”(proximity) | 0.270 |
BioGRID (82): ADNP2 (Affinity Capture-RNA), ADNP2 (Affinity Capture-RNA), ADNP2 (Affinity Capture-RNA), ADNP2 (Affinity Capture-MS), ADNP2 (Affinity Capture-MS), ADNP2 (Affinity Capture-MS), ADNP2 (Affinity Capture-MS), ADNP2 (Affinity Capture-MS), ADNP2 (Affinity Capture-MS), ADNP2 (Affinity Capture-MS), ADNP2 (Affinity Capture-MS), ADNP2 (Affinity Capture-MS), ADNP2 (Affinity Capture-MS), ADNP2 (Affinity Capture-RNA), ADNP2 (Affinity Capture-MS)
ESM2 similar proteins: A0A1L8H0H2, A0JN51, A0JNE3, A4IFD2, A4QP16, D4A4D7, F8VPJ6, O13186, O15060, O46567, O57415, O73590, P13056, P59759, P79269, P79686, Q14188, Q1LVF3, Q2T9I9, Q3UH06, Q505F1, Q5HZN1, Q5R7F2, Q5RCZ5, Q5ZIX8, Q6DJS0, Q6IQ32, Q6IRB8, Q6P4L9, Q6P4R8, Q6PIJ4, Q6S7F2, Q6XLJ0, Q6ZPK0, Q7ZXG4, Q80VX4, Q8AYC1, Q8AYC2, Q8C0C0, Q8C966
Diamond homologs: F1QLG5, Q6IQ32, Q9H2P0, Q9JKL8, Q9Z103, Q8CHC8
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
291 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 88 |
| Likely pathogenic | 3 |
| Uncertain significance | 171 |
| Likely benign | 22 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 144196 | GRCh38/hg38 18q23(chr18:77263709-80252149)x1 | Pathogenic |
| 144207 | GRCh38/hg38 18q21.32-23(chr18:59567681-80252149)x1 | Pathogenic |
| 144342 | GRCh38/hg38 18q22.2-23(chr18:69200589-80252149)x1 | Pathogenic |
| 146087 | GRCh38/hg38 18q21.2-23(chr18:51190429-80252149)x1 | Pathogenic |
| 146226 | GRCh38/hg38 18q22.3-23(chr18:72426712-80252149)x1 | Pathogenic |
| 146311 | GRCh38/hg38 18q21.33-23(chr18:61576009-80252149)x1 | Pathogenic |
| 146547 | GRCh38/hg38 18q22.3-23(chr18:71067804-80252149)x1 | Pathogenic |
| 146574 | GRCh38/hg38 18q21.33-23(chr18:63306200-80252149)x1 | Pathogenic |
| 146891 | GRCh38/hg38 18q22.1-23(chr18:68417596-80252149)x1 | Pathogenic |
| 147397 | GRCh38/hg38 18q23(chr18:79922576-80252149)x1 | Pathogenic |
| 147495 | GRCh38/hg38 18q21.2-23(chr18:53865057-80252149)x1 | Pathogenic |
| 147608 | GRCh38/hg38 18q23(chr18:75424051-80224243)x1 | Pathogenic |
| 147749 | GRCh38/hg38 18q23(chr18:75988877-80252149)x1 | Pathogenic |
| 147763 | GRCh38/hg38 18q22.1-23(chr18:65693588-80252149)x1 | Pathogenic |
| 148304 | GRCh38/hg38 18q22.1-23(chr18:68563422-80254946)x1 | Pathogenic |
| 148742 | GRCh38/hg38 18q22.1-23(chr18:66190016-80254946)x1 | Pathogenic |
| 149650 | GRCh38/hg38 18q22.1-23(chr18:66649227-80254936)x1 | Pathogenic |
| 149756 | GRCh38/hg38 18q22.3-23(chr18:73332839-80254946)x3 | Pathogenic |
| 149757 | GRCh38/hg38 18q22.3-23(chr18:73332839-80254946)x1 | Pathogenic |
| 150633 | GRCh38/hg38 18q22.3-23(chr18:71872883-80254946)x3 | Pathogenic |
| 150640 | GRCh38/hg38 18q21.33-23(chr18:63756916-80254946)x1 | Pathogenic |
| 150873 | GRCh38/hg38 18q21.32-23(chr18:59996934-80254946)x1 | Pathogenic |
| 152338 | GRCh38/hg38 18q22.1-23(chr18:68340002-80256240)x1 | Pathogenic |
| 1526630 | GRCh37/hg19 18q21.33-23(chr18:59332806-78014123) | Pathogenic |
| 1526643 | GRCh37/hg19 18q22.3-23(chr18:70333866-78014123) | Pathogenic |
| 154000 | GRCh38/hg38 18q22.1-23(chr18:66456349-80256240)x1 | Pathogenic |
| 154513 | GRCh38/hg38 18q23(chr18:76635470-80252149)x1 | Pathogenic |
| 154622 | GRCh38/hg38 18q22.1-23(chr18:67686362-80252149)x3 | Pathogenic |
| 155129 | GRCh38/hg38 18q22.3-23(chr18:72639340-80254946)x1 | Pathogenic |
| 155490 | GRCh38/hg38 18q22.1-23(chr18:68857904-80256240)x1 | Pathogenic |
SpliceAI
878 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 18:80109470:GCG:G | donor_gain | 1.0000 |
| 18:80117524:TTTAA:T | acceptor_loss | 1.0000 |
| 18:80117525:TTAA:T | acceptor_loss | 1.0000 |
| 18:80117526:TAAGG:T | acceptor_loss | 1.0000 |
| 18:80117527:A:AG | acceptor_gain | 1.0000 |
| 18:80117527:AAG:A | acceptor_gain | 1.0000 |
| 18:80117528:A:AC | acceptor_loss | 1.0000 |
| 18:80117528:A:AG | acceptor_gain | 1.0000 |
| 18:80117529:G:GG | acceptor_gain | 1.0000 |
| 18:80117529:GGA:G | acceptor_gain | 1.0000 |
| 18:80117529:GGAA:G | acceptor_gain | 1.0000 |
| 18:80117529:GGAAA:G | acceptor_gain | 1.0000 |
| 18:80133098:A:AG | acceptor_gain | 1.0000 |
| 18:80133098:AAAAG:A | acceptor_gain | 1.0000 |
| 18:80133099:A:G | acceptor_gain | 1.0000 |
| 18:80133102:G:C | acceptor_loss | 1.0000 |
| 18:80133189:AGTGG:A | donor_loss | 1.0000 |
| 18:80133190:GTG:G | donor_gain | 1.0000 |
| 18:80133192:GGTA:G | donor_loss | 1.0000 |
| 18:80133193:G:A | donor_loss | 1.0000 |
| 18:80133193:G:GG | donor_gain | 1.0000 |
| 18:80133194:T:G | donor_loss | 1.0000 |
| 18:80135611:GA:G | acceptor_gain | 1.0000 |
| 18:80135611:GAGAT:G | acceptor_gain | 1.0000 |
| 18:80109473:G:GG | donor_gain | 0.9900 |
| 18:80117528:AG:A | acceptor_gain | 0.9900 |
| 18:80117529:G:A | acceptor_gain | 0.9900 |
| 18:80117598:TGA:T | donor_gain | 0.9900 |
| 18:80117600:AAAG:A | donor_gain | 0.9900 |
| 18:80117657:GGAC:G | donor_gain | 0.9900 |
AlphaMissense
7373 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 18:80135882:T:C | C157R | 1.000 |
| 18:80135884:T:G | C157W | 1.000 |
| 18:80135891:T:A | C160S | 1.000 |
| 18:80135891:T:C | C160R | 1.000 |
| 18:80135892:G:C | C160S | 1.000 |
| 18:80135926:G:C | K171N | 1.000 |
| 18:80135926:G:T | K171N | 1.000 |
| 18:80135937:T:C | L175P | 1.000 |
| 18:80136062:T:C | C217R | 1.000 |
| 18:80136153:T:C | L247P | 1.000 |
| 18:80137490:T:A | W693R | 1.000 |
| 18:80137490:T:C | W693R | 1.000 |
| 18:80137492:G:C | W693C | 1.000 |
| 18:80137492:G:T | W693C | 1.000 |
| 18:80137499:T:C | C696R | 1.000 |
| 18:80135735:T:C | C108R | 0.999 |
| 18:80135876:T:C | F155L | 0.999 |
| 18:80135878:C:A | F155L | 0.999 |
| 18:80135878:C:G | F155L | 0.999 |
| 18:80135882:T:A | C157S | 0.999 |
| 18:80135883:G:A | C157Y | 0.999 |
| 18:80135883:G:C | C157S | 0.999 |
| 18:80135892:G:A | C160Y | 0.999 |
| 18:80135892:G:T | C160F | 0.999 |
| 18:80135893:T:G | C160W | 0.999 |
| 18:80135930:C:A | H173N | 0.999 |
| 18:80135930:C:G | H173D | 0.999 |
| 18:80135931:A:C | H173P | 0.999 |
| 18:80135931:A:G | H173R | 0.999 |
| 18:80135932:T:A | H173Q | 0.999 |
dbSNP variants (sampled 300 via entrez): RS1000057194 (18:80139139 A>G), RS1000108639 (18:80129111 T>TG), RS1000191065 (18:80114705 A>C,G), RS1000254383 (18:80123495 C>T), RS1000329905 (18:80112428 C>T), RS1000338306 (18:80134513 A>G), RS1000733305 (18:80110240 C>T), RS1000951259 (18:80140591 G>A), RS1000953477 (18:80116019 C>T), RS1001070164 (18:80113653 C>T), RS1001192103 (18:80122007 C>T), RS1001246846 (18:80116181 A>G), RS1001429184 (18:80133455 A>G,T), RS1001502780 (18:80139768 G>C), RS1001556771 (18:80139551 C>T)
Disease associations
OMIM: gene MIM:617422 | disease phenotypes: MIM:601808, MIM:608572, MIM:193250
GenCC curated gene-disease
Mondo (4): chromosome 18q deletion syndrome (MONDO:0011147), choanal atresia-hearing loss-cardiac defects-craniofacial dysmorphism syndrome (MONDO:0012064), volvulus of midgut (MONDO:0008666), neurodevelopmental disorder (MONDO:0700092)
Orphanet (5): Monosomy 18q syndrome (Orphanet:1600), Burn-McKeown syndrome (Orphanet:1200), OBSOLETE: Familial intestinal malrotation-facial anomalies syndrome (Orphanet:2454), Familial intestinal malrotation (Orphanet:508410), Partial deletion of the long arm of chromosome 18 syndrome (Orphanet:262146)
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
0 associations (top):
MeSH disease descriptors (4)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D065886 | Neurodevelopmental Disorders | F03.625 |
| C536580 | Chromosome 18 deletion syndrome (supp.) | |
| C563682 | Oculootofacial Dysplasia (supp.) | |
| C562456 | Volvulus Of Midgut (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
33 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| 7,8-Dihydro-7,8-dihydroxybenzo(a)pyrene 9,10-oxide | decreases expression | 3 |
| Cadmium Chloride | increases expression | 3 |
| sodium arsenite | decreases expression, increases abundance, increases expression | 2 |
| Smoke | decreases expression, increases abundance | 2 |
| Valproic Acid | decreases expression, increases expression | 2 |
| aristolochic acid I | decreases expression | 1 |
| GSK-J4 | decreases expression | 1 |
| FR900359 | decreases phosphorylation | 1 |
| testosterone enanthate | affects expression | 1 |
| beta-lapachone | increases expression | 1 |
| beta-methylcholine | affects expression | 1 |
| tamibarotene | affects expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, decreases expression | 1 |
| ICG 001 | increases expression | 1 |
| abrine | increases expression | 1 |
| Grape Seed Proanthocyanidins | affects cotreatment, increases expression | 1 |
| dorsomorphin | decreases expression, affects cotreatment | 1 |
| PCI 5002 | affects cotreatment, increases expression | 1 |
| Leflunomide | increases expression | 1 |
| Air Pollutants | increases abundance, decreases expression | 1 |
| Arsenic | decreases expression, increases abundance | 1 |
| Catechin | affects cotreatment, increases expression | 1 |
| Dichlorodiphenyl Dichloroethylene | increases expression | 1 |
| Dinitrochlorobenzene | affects binding | 1 |
| Formaldehyde | decreases expression | 1 |
| Lithium | increases expression | 1 |
| Phenylmercuric Acetate | decreases expression, affects cotreatment | 1 |
| Thiram | increases expression | 1 |
| Tobacco Smoke Pollution | increases expression | 1 |
| Tretinoin | decreases expression | 1 |
Clinical trials (associated diseases)
203 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT04586348 | PHASE4 | UNKNOWN | Prenatal Iodine Supplementation and Early Childhood Neurodevelopment |
| NCT04873115 | PHASE4 | UNKNOWN | Double-blind, Placebo-controlled, Randomized Clinical Trial Comparing the Efficacy and Safety of Sialanar Plus orAl rehabiLitation Against Placebo Plus Oral Rehabilitation for chIldren and Adolescents With seVere Sialorrhoea and Neurodisabilties, |
| NCT02559102 | PHASE3 | COMPLETED | Dexmedetomidine Sedation Versus General Anaesthesia for Inguinal Hernia Surgery in Infants |
| NCT02757079 | PHASE3 | COMPLETED | Study of the Efficacy and Safety of NPC-15 for Sleep Disorders of Children With Neurodevelopmental Disorders |
| NCT06915480 | PHASE3 | RECRUITING | Reducing Missed Appointments |
| NCT07377032 | PHASE3 | RECRUITING | TAP-GRIN: Interventional Study on Patients With GRIN-related Neurodevelopmental Disorders |
| NCT02909959 | PHASE2 | COMPLETED | Sulforaphane for the Treatment of Young Men With Autism Spectrum Disorder |
| NCT06081348 | PHASE2 | RECRUITING | Sertraline vs. Placebo in the Treatment of Anxiety in Children and AdoLescents With NeurodevelopMental Disorders |
| NCT06352372 | PHASE2 | COMPLETED | Safety and Efficacy of tPBM for Epileptiform Activity in Autism |
| NCT00503191 | PHASE1 | COMPLETED | NeuroModulation Technique Treatment of Autism |
| NCT04475848 | PHASE1 | COMPLETED | A Study to Investigate the Safety, Tolerability, Pharmacokinetics, Pharmacodynamics and Food Effect of RO6953958 in Healthy Participants |
| NCT06300398 | PHASE1 | COMPLETED | IAMA-6 Oral Dose Study in Healthy Adults |
| NCT03356314 | Not specified | COMPLETED | Prenatal Ultrasound Screening of Intestinal Malrotation With a Higher Risk of Volvulus |
| NCT01783041 | PHASE2/PHASE3 | COMPLETED | Effect of Early L-Carnitine Supplementation on Neurodevelopmental Outcomes in Very Preterm Infants |
| NCT05767385 | PHASE2/PHASE3 | RECRUITING | Fetal Cerebrovascular Autoregulation in Congenital Heart Disease and Association With Neonatal Neurobehavior |
| NCT05675098 | EARLY_PHASE1 | NOT_YET_RECRUITING | Central Nervous System Stimulants and Physical Function in Children With Cerebral Palsy |
| NCT00783783 | Not specified | COMPLETED | CYP2D6 Pharmacogenetics in Risperidone-Treated Children |
| NCT01778504 | Not specified | RECRUITING | Studying Childhood-onset Behavioral, Psychiatric, and Developmental Disorders |
| NCT01850784 | Not specified | UNKNOWN | High Energy Formula Feeding in Infants With Congenital Heart Disease |
| NCT01922791 | Not specified | COMPLETED | Nutrition and Pregnancy Intervention Study |
| NCT01942525 | Not specified | UNKNOWN | Influence of Intrauterine Growth Restriction on Amplitude-integrated EEG in Preterm Infants |
| NCT02003170 | Not specified | COMPLETED | Etiology and Early Diagnosis of Neurodevelopmental Disorders |
| NCT02118649 | Not specified | ACTIVE_NOT_RECRUITING | Enhancing Behavior and Brain Response to Visual Targets Using a Computer Game |
| NCT02557191 | Not specified | TERMINATED | Biomarkers, Neurodevelopment and Preterm Infants |
| NCT02690675 | Not specified | COMPLETED | Iron Supplement Effect on Child Development |
| NCT02694003 | Not specified | COMPLETED | Better Nights, Better Days for Children With Neurodevelopment Disorders |
| NCT02792894 | Not specified | COMPLETED | Family Networks (FaNs) for Children With Developmental Disorders and Delays |
| NCT02871674 | Not specified | UNKNOWN | Good Night Project: Behavioural Sleep Interventions for Children With ADHD: A Randomised Controlled Trial |
| NCT02887157 | Not specified | COMPLETED | Analyzing Retinal Microanatomy in ROP |
| NCT02898298 | Not specified | COMPLETED | Positive Emotion Regulation Training in Children, Adolescents and Young Adults With and Without Developmental Disorder |
| NCT02912780 | Not specified | UNKNOWN | Introduction of Microsystems in a Level 3 Neonatal Intensive Care Unit |
| NCT03023293 | Not specified | COMPLETED | n-3 PUFAs, Irisin and Maternal Glucose Metabolism From Pregnancy to Postpartum |
| NCT03023644 | Not specified | COMPLETED | Improving Neurodevelopmental Outcomes in Children With Congenital Heart Disease: An Intervention Study |
| NCT03032991 | Not specified | UNKNOWN | Early Biomarkers of Neurodevelopment in Offspring of Diabetic Mothers |
| NCT03088189 | Not specified | TERMINATED | Effect of Parental Peri-conceptional Vitamin B12 Supplementation on Infant Neurocognitive Development in Offspring |
| NCT03096028 | Not specified | COMPLETED | Developmental Origins of Mental Health Disorders |
| NCT03148782 | Not specified | COMPLETED | Brain Plasticity Underlying Acquisition of New Organizational Skills in Children-R61 Phase |
| NCT03172104 | Not specified | COMPLETED | Neurobehavioural Development of Infants Born <30 Weeks Gestational Age Between Birth and Five Years of Age |
| NCT03222375 | Not specified | RECRUITING | SQUED™ Series 28.1 Home-use and Treatment of Autowave Reverberator of Autism |
| NCT03229928 | Not specified | COMPLETED | Clinical Testing of a Real-Time Behavior Measurement Tool: Measuring Outcomes for CHAnge |
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): choanal atresia-hearing loss-cardiac defects-craniofacial dysmorphism syndrome, chromosome 18q deletion syndrome, volvulus of midgut