AFAP1L1
gene geneOn this page
Also known as FLJ36748
Summary
AFAP1L1 (actin filament associated protein 1 like 1, HGNC:26714) is a protein-coding gene on chromosome 5q32, encoding Actin filament-associated protein 1-like 1 (Q8TED9). May be involved in podosome and invadosome formation.
Predicted to be located in several cellular components, including actin cytoskeleton; anchoring junction; and cell projection. Predicted to be active in cytosol.
Source: NCBI Gene 134265 — RefSeq curated summary.
At a glance
- GWAS associations: 1
- Clinical variants (ClinVar): 143 total
- MANE Select transcript:
NM_152406
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:26714 |
| Approved symbol | AFAP1L1 |
| Name | actin filament associated protein 1 like 1 |
| Location | 5q32 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | FLJ36748 |
| Ensembl gene | ENSG00000157510 |
| Ensembl biotype | protein_coding |
| OMIM | 614410 |
| Entrez | 134265 |
Gene structure
Transcript identifiers
Ensembl transcripts: 14 — 10 protein_coding, 3 retained_intron, 1 protein_coding_CDS_not_defined
ENST00000296721, ENST00000455574, ENST00000508444, ENST00000513665, ENST00000515000, ENST00000522492, ENST00000897012, ENST00000897013, ENST00000951980, ENST00000951981, ENST00000951982, ENST00000951983, ENST00000951984, ENST00000951985
RefSeq mRNA: 4 — MANE Select: NM_152406
NM_001146337, NM_001323062, NM_001323063, NM_152406
CCDS: CCDS34274, CCDS54932
Canonical transcript exons
ENST00000296721 — 19 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001032994 | 149312112 | 149312204 |
| ENSE00001125148 | 149315821 | 149315914 |
| ENSE00003463360 | 149309956 | 149310135 |
| ENSE00003466509 | 149316151 | 149316303 |
| ENSE00003489411 | 149307402 | 149307613 |
| ENSE00003495128 | 149332695 | 149332873 |
| ENSE00003586444 | 149340007 | 149343637 |
| ENSE00003587746 | 149271859 | 149271984 |
| ENSE00003603437 | 149299509 | 149299637 |
| ENSE00003604233 | 149322606 | 149322717 |
| ENSE00003615254 | 149329666 | 149329830 |
| ENSE00003616195 | 149302418 | 149302526 |
| ENSE00003622707 | 149300271 | 149300354 |
| ENSE00003651442 | 149319582 | 149319727 |
| ENSE00003651805 | 149306306 | 149306404 |
| ENSE00003653711 | 149335594 | 149335722 |
| ENSE00003654458 | 149301133 | 149301230 |
| ENSE00003654815 | 149320391 | 149320463 |
| ENSE00003691839 | 149317729 | 149317940 |
Expression profiles
Bgee: expression breadth ubiquitous, 205 present calls, max score 93.28.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 12.2754 / max 431.3137, expressed in 1281 samples.
FANTOM5 promoters (3 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 59354 | 11.8307 | 1278 |
| 59355 | 0.4134 | 207 |
| 59353 | 0.0314 | 11 |
Top tissues by expression
251 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| apex of heart | UBERON:0002098 | 93.28 | gold quality |
| hindlimb stylopod muscle | UBERON:0004252 | 92.36 | gold quality |
| heart left ventricle | UBERON:0002084 | 91.87 | gold quality |
| sural nerve | UBERON:0015488 | 91.87 | gold quality |
| right atrium auricular region | UBERON:0006631 | 91.82 | gold quality |
| cardiac ventricle | UBERON:0002082 | 91.59 | gold quality |
| cardiac atrium | UBERON:0002081 | 91.50 | gold quality |
| subcutaneous adipose tissue | UBERON:0002190 | 91.03 | gold quality |
| omental fat pad | UBERON:0010414 | 90.71 | gold quality |
| peritoneum | UBERON:0002358 | 90.63 | gold quality |
| adipose tissue of abdominal region | UBERON:0007808 | 90.43 | gold quality |
| tibial nerve | UBERON:0001323 | 90.41 | gold quality |
| tibialis anterior | UBERON:0001385 | 90.14 | gold quality |
| gastrocnemius | UBERON:0001388 | 89.98 | gold quality |
| heart | UBERON:0000948 | 89.96 | gold quality |
| muscle of leg | UBERON:0001383 | 89.94 | gold quality |
| adipose tissue | UBERON:0001013 | 89.39 | gold quality |
| cardiac muscle of right atrium | UBERON:0003379 | 89.21 | gold quality |
| skeletal muscle organ | UBERON:0014892 | 89.00 | gold quality |
| left ventricle myocardium | UBERON:0006566 | 88.71 | gold quality |
| deltoid | UBERON:0001476 | 88.63 | gold quality |
| right lung | UBERON:0002167 | 87.99 | gold quality |
| upper lobe of left lung | UBERON:0008952 | 87.92 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 87.48 | gold quality |
| skeletal muscle tissue | UBERON:0001134 | 87.07 | gold quality |
| upper lobe of lung | UBERON:0008948 | 86.93 | gold quality |
| skeletal muscle tissue of biceps brachii | UBERON:0004502 | 86.89 | gold quality |
| muscle tissue | UBERON:0002385 | 86.45 | gold quality |
| left uterine tube | UBERON:0001303 | 86.13 | gold quality |
| biceps brachii | UBERON:0001507 | 85.34 | gold quality |
Single-cell (SCXA)
Detected in 4 experiment(s), a significant marker in 3.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-HCAD-10 | yes | 30.72 |
| E-MTAB-8271 | yes | 17.82 |
| E-ANND-3 | yes | 8.32 |
| E-MTAB-6058 | no | 53.89 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): SP3
miRNA regulators (miRDB)
131 targeting AFAP1L1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4533 | 100.00 | 69.48 | 2758 |
| HSA-MIR-3120-5P | 100.00 | 65.56 | 965 |
| HSA-MIR-34A-5P | 99.99 | 71.21 | 1784 |
| HSA-MIR-4531 | 99.99 | 69.70 | 3181 |
| HSA-MIR-449A | 99.99 | 71.05 | 1776 |
| HSA-MIR-4775 | 99.98 | 75.00 | 6394 |
| HSA-MIR-6888-3P | 99.97 | 65.95 | 1170 |
| HSA-MIR-6778-3P | 99.96 | 67.29 | 2693 |
| HSA-MIR-302E | 99.96 | 70.74 | 2669 |
| HSA-MIR-3910 | 99.95 | 71.13 | 2227 |
| HSA-MIR-651-3P | 99.94 | 73.48 | 5177 |
| HSA-MIR-141-3P | 99.94 | 72.79 | 2421 |
| HSA-MIR-200A-3P | 99.94 | 72.68 | 2420 |
| HSA-MIR-6744-5P | 99.93 | 66.82 | 748 |
| HSA-MIR-218-5P | 99.93 | 72.22 | 2103 |
| HSA-MIR-6809-3P | 99.91 | 71.45 | 3814 |
| HSA-MIR-589-3P | 99.91 | 69.62 | 2088 |
| HSA-MIR-1297 | 99.91 | 73.41 | 3162 |
| HSA-MIR-4753-3P | 99.90 | 71.03 | 3786 |
| HSA-MIR-5682 | 99.89 | 72.56 | 1005 |
| HSA-MIR-4697-3P | 99.89 | 67.09 | 1123 |
| HSA-MIR-302A-3P | 99.89 | 71.23 | 1777 |
| HSA-MIR-302B-3P | 99.89 | 71.23 | 1777 |
| HSA-MIR-302C-3P | 99.89 | 71.20 | 1778 |
| HSA-MIR-302D-3P | 99.89 | 71.25 | 1777 |
| HSA-MIR-605-3P | 99.88 | 69.22 | 1833 |
| HSA-MIR-1321 | 99.84 | 65.30 | 1811 |
| HSA-MIR-4739 | 99.84 | 65.25 | 1832 |
| HSA-MIR-4756-5P | 99.84 | 64.98 | 1809 |
| HSA-MIR-130B-5P | 99.83 | 68.50 | 1888 |
Literature-anchored findings (GeneRIF, showing 8)
- Data suggest that AFAP1L1 may forge unique protein interactions in which AFAP1 is less efficient, and these interactions may allow AFAP1L1 to affect invadosome formation. (PMID:21333378)
- AFAP1L1 has a role in the progression of spindle cell sarcomas and is a prognostic biomarker. (PMID:21516130)
- Findings indicate a role for transcription factor Sp3 in sarcomas as a driver for expression of the metastasis-related gene AFAP1L1 (actin filament-associated protein 1-like 1). (PMID:23326307)
- AFAP1L1 plays a role in the progression of colorectal cancer by modulating cell shape and motility and by inhibiting anoikis, presumably through interactions with vinculin-including protein complexes. (PMID:24723436)
- data define a novel pathway that directs Lyn/Src family tyrosine kinase signals to sarcoma cell invadopodia through specific recruitment of Vav2 and Nck2 to phosphorylated AFAP1L1, to control cell migration and invasion (PMID:26212012)
- AFAP1L1 promotes cell proliferation, accelerates cell cycle progression, and prevents cell apoptosis in lung cancer cells. (PMID:29323101)
- AFAP1L1 promotes gastric cancer progression by interacting with VAV2 to facilitate CDC42-mediated activation of ITGA5 signaling pathway. (PMID:36631800)
- Hypoxia-induced AFAP1L1 regulates pathological neovascularization via the YAP-DLL4-NOTCH axis. (PMID:37737201)
Cross-species orthologs
4 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | afap1l1b | ENSDARG00000056453 |
| danio_rerio | afap1l1a | ENSDARG00000089162 |
| mus_musculus | Afap1l1 | ENSMUSG00000033032 |
| rattus_norvegicus | Afap1l1 | ENSRNOG00000019403 |
Paralogs (2): AFAP1L2 (ENSG00000169129), AFAP1 (ENSG00000196526)
Protein
Protein identifiers
Actin filament-associated protein 1-like 1 — Q8TED9 (reviewed: Q8TED9)
All UniProt accessions (1): Q8TED9
UniProt curated annotations — full annotation on UniProt →
Function. May be involved in podosome and invadosome formation.
Subunit / interactions. Interacts with CTTN.
Subcellular location. Cytoplasm. Cell projection. Podosome. Invadopodium. Cytoskeleton. Stress fiber.
Tissue specificity. Expressed in breast, colon and brain. In all 3 tissues, expressed in the microvasculature (at protein level). In addition, in the breast, found in the contractile myoepithelial cell layer which surrounds the breast ducts (at protein level). In the colon, expressed in the mucous membrane and colonic crypts and in the smooth muscle cell layer which provide movement of the colon (at protein level). In the cerebellum, localized around the Purkinje neurons and the granule cells of the granular layer, but not inside cell bodies (at protein level). Outside of the cerebellar cortex, expressed in glial cells (at protein level). Highly expressed away from the cell bodies within the dentate nucleus (at protein level).
Isoforms (4)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q8TED9-1 | 1 | yes |
| Q8TED9-2 | 2 | |
| Q8TED9-3 | 3 | |
| Q8TED9-4 | 4 |
RefSeq proteins (3): NP_001139809, NP_001309991, NP_689619* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001849 | PH_domain | Domain |
| IPR011993 | PH-like_dom_sf | Homologous_superfamily |
| IPR030113 | AFAP | Family |
Pfam: PF00169
UniProt features (27 total): modified residue 8, compositionally biased region 4, splice variant 4, region of interest 4, sequence conflict 3, domain 2, chain 1, coiled-coil region 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q8TED9-F1 | 64.40 | 0.29 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (8): 94, 98, 104, 153, 329, 343, 557, 747
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 74 (showing top):
LINDGREN_BLADDER_CANCER_CLUSTER_2A_DN, RICKMAN_TUMOR_DIFFERENTIATED_WELL_VS_POORLY_DN, BASAKI_YBX1_TARGETS_UP, chr5q32, GOCC_ACTIN_FILAMENT_BUNDLE, GOCC_ACTOMYOSIN, SANSOM_APC_TARGETS, GOCC_PODOSOME, GEORGES_TARGETS_OF_MIR192_AND_MIR215, RAY_TUMORIGENESIS_BY_ERBB2_CDC25A_DN, MEISSNER_NPC_HCP_WITH_H3_UNMETHYLATED, MEISSNER_BRAIN_HCP_WITH_H3K4ME3_AND_H3K27ME3, MIKKELSEN_MCV6_HCP_WITH_H3K27ME3, CHYLA_CBFA2T3_TARGETS_UP, PEDRIOLI_MIR31_TARGETS_DN
GO Biological Process (0):
GO Molecular Function (1): protein binding (GO:0005515)
GO Cellular Component (7): stress fiber (GO:0001725), podosome (GO:0002102), cytosol (GO:0005829), cell projection (GO:0042995), cytoplasm (GO:0005737), cytoskeleton (GO:0005856), anchoring junction (GO:0070161)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 3 |
| binding | 1 |
| actomyosin | 1 |
| contractile actin filament bundle | 1 |
| actin-based cell projection | 1 |
| cytoplasm | 1 |
| intracellular anatomical structure | 1 |
| intracellular membraneless organelle | 1 |
| cell junction | 1 |
Protein interactions and networks
STRING
434 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| AFAP1L1 | GRPEL2 | Q8TAA5 | 575 |
| AFAP1L1 | HCLS1 | P14317 | 555 |
| AFAP1L1 | CTTN | Q14247 | 552 |
| AFAP1L1 | ABLIM3 | O94929 | 502 |
| AFAP1L1 | SYT10 | Q6XYQ8 | 471 |
| AFAP1L1 | RCBTB2 | O95199 | 463 |
| AFAP1L1 | TDRD5 | Q8NAT2 | 463 |
| AFAP1L1 | VPS53 | Q5VIR6 | 460 |
| AFAP1L1 | PCYOX1L | Q8NBM8 | 457 |
| AFAP1L1 | RPH3AL | Q9UNE2 | 457 |
| AFAP1L1 | GEMIN4 | P57678 | 442 |
| AFAP1L1 | OR2D3 | Q8NGH3 | 431 |
| AFAP1L1 | CNTN6 | Q9UQ52 | 421 |
| AFAP1L1 | GLB1L2 | Q8IW92 | 411 |
| AFAP1L1 | NSA2 | O95478 | 401 |
IntAct
19 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| GADD45G | AFAP1L1 | psi-mi:“MI:0915”(physical association) | 0.780 |
| AFAP1L1 | GADD45G | psi-mi:“MI:0915”(physical association) | 0.780 |
| AFAP1L1 | PPIB | psi-mi:“MI:0915”(physical association) | 0.400 |
| CTBP1 | TAF15 | psi-mi:“MI:0914”(association) | 0.350 |
| ATG16L1 | ESYT2 | psi-mi:“MI:0914”(association) | 0.350 |
| HSD17B1 | RAD21 | psi-mi:“MI:0914”(association) | 0.350 |
| AFAP1L1 | KDM4A | psi-mi:“MI:0914”(association) | 0.350 |
| AFAP1L1 | DDX3Y | psi-mi:“MI:0914”(association) | 0.350 |
| INSR | RIMOC1 | psi-mi:“MI:0914”(association) | 0.350 |
| AFAP1L1 | psi-mi:“MI:0915”(physical association) | 0.000 | |
| TRIP6 | AFAP1L1 | psi-mi:“MI:0915”(physical association) | 0.000 |
| GADD45G | AFAP1L1 | psi-mi:“MI:0915”(physical association) | 0.000 |
| AFAP1L1 | ezrA | psi-mi:“MI:0915”(physical association) | 0.000 |
BioGRID (23): AFAP1L1 (Two-hybrid), AFAP1L1 (Affinity Capture-RNA), AFAP1L1 (Affinity Capture-MS), AFAP1L1 (Affinity Capture-RNA), AFAP1L1 (Two-hybrid), AFAP1L1 (Proximity Label-MS), DECR1 (Affinity Capture-MS), KDM4A (Affinity Capture-MS), AFAP1L1 (Affinity Capture-MS), KLHDC2 (Affinity Capture-MS), YWHAG (Affinity Capture-MS), YWHAE (Affinity Capture-MS), KLHL42 (Affinity Capture-MS), FEM1B (Affinity Capture-MS), YWHAB (Affinity Capture-MS)
ESM2 similar proteins: A0JN71, A4IFK0, A5PMU4, A6QQV9, O15034, O15040, O62666, O62674, O62675, O62676, O62677, O62678, O75995, P49796, P52734, P59672, P78314, P97432, P98174, Q06649, Q0V8R5, Q13905, Q14596, Q3U0J8, Q501R9, Q53GL0, Q5BJM5, Q5F3C8, Q5RC94, Q5SUE8, Q6AI12, Q6ZMT1, Q7Z5H3, Q80U40, Q80UZ0, Q80XA6, Q80YS6, Q8BL80, Q8K352, Q8N556
Diamond homologs: A6QQV9, D4AB98, F7EL49, Q17R10, Q4V8Y7, Q5DTU0, Q6PF55, Q80YS6, Q8BZI0, Q8N4X5, Q8N556, Q8TED9, Q8VH46, Q90738
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
143 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 129 |
| Likely benign | 2 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
2968 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 5:149271983:GG:G | donor_gain | 1.0000 |
| 5:149271984:GG:G | donor_gain | 1.0000 |
| 5:149299504:CGCA:C | acceptor_loss | 1.0000 |
| 5:149299505:GCA:G | acceptor_loss | 1.0000 |
| 5:149299506:CA:C | acceptor_loss | 1.0000 |
| 5:149299507:A:AG | acceptor_gain | 1.0000 |
| 5:149299507:AGT:A | acceptor_gain | 1.0000 |
| 5:149299508:G:GA | acceptor_gain | 1.0000 |
| 5:149299508:GT:G | acceptor_gain | 1.0000 |
| 5:149299508:GTG:G | acceptor_gain | 1.0000 |
| 5:149299508:GTGC:G | acceptor_gain | 1.0000 |
| 5:149299508:GTGCT:G | acceptor_gain | 1.0000 |
| 5:149299634:CCAGG:C | donor_loss | 1.0000 |
| 5:149299637:GG:G | donor_loss | 1.0000 |
| 5:149299638:G:C | donor_loss | 1.0000 |
| 5:149299639:T:A | donor_loss | 1.0000 |
| 5:149300267:A:AG | acceptor_gain | 1.0000 |
| 5:149300268:C:G | acceptor_gain | 1.0000 |
| 5:149300269:A:AG | acceptor_gain | 1.0000 |
| 5:149300269:A:C | acceptor_loss | 1.0000 |
| 5:149300270:G:GC | acceptor_gain | 1.0000 |
| 5:149300270:GC:G | acceptor_gain | 1.0000 |
| 5:149300270:GCA:G | acceptor_gain | 1.0000 |
| 5:149300270:GCAA:G | acceptor_gain | 1.0000 |
| 5:149300270:GCAAA:G | acceptor_gain | 1.0000 |
| 5:149300350:ATTTG:A | donor_gain | 1.0000 |
| 5:149300351:TTTG:T | donor_gain | 1.0000 |
| 5:149300352:TTG:T | donor_gain | 1.0000 |
| 5:149300352:TTGGT:T | donor_loss | 1.0000 |
| 5:149300353:TG:T | donor_gain | 1.0000 |
AlphaMissense
5013 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 5:149310127:T:A | W307R | 0.999 |
| 5:149310127:T:C | W307R | 0.999 |
| 5:149307422:A:C | S186R | 0.998 |
| 5:149307424:C:A | S186R | 0.998 |
| 5:149307424:C:G | S186R | 0.998 |
| 5:149307425:A:C | S187R | 0.998 |
| 5:149307427:C:A | S187R | 0.998 |
| 5:149307427:C:G | S187R | 0.998 |
| 5:149307542:T:C | F226L | 0.998 |
| 5:149307544:C:A | F226L | 0.998 |
| 5:149307544:C:G | F226L | 0.998 |
| 5:149307572:T:A | W236R | 0.998 |
| 5:149307572:T:C | W236R | 0.998 |
| 5:149307574:G:C | W236C | 0.998 |
| 5:149307574:G:T | W236C | 0.998 |
| 5:149309959:T:G | Y251D | 0.998 |
| 5:149310059:T:C | L284P | 0.998 |
| 5:149319609:T:A | W503R | 0.998 |
| 5:149319609:T:C | W503R | 0.998 |
| 5:149307555:A:T | K230I | 0.997 |
| 5:149340012:G:C | W763C | 0.997 |
| 5:149340012:G:T | W763C | 0.997 |
| 5:149299533:T:C | L14P | 0.996 |
| 5:149307546:T:C | L227P | 0.996 |
| 5:149307567:G:A | G234E | 0.996 |
| 5:149307609:T:C | L248P | 0.996 |
| 5:149310129:G:C | W307C | 0.996 |
| 5:149310129:G:T | W307C | 0.996 |
| 5:149307431:T:C | Y189H | 0.995 |
| 5:149307556:A:C | K230N | 0.995 |
dbSNP variants (sampled 300 via entrez): RS1000017539 (5:149298840 A>G), RS1000027254 (5:149319677 G>A), RS1000047758 (5:149323695 G>A), RS1000085958 (5:149277984 C>T), RS1000095430 (5:149331352 G>A), RS1000141045 (5:149319435 G>A), RS1000159279 (5:149295235 T>C), RS1000204907 (5:149274368 C>G,T), RS1000347976 (5:149310472 A>G), RS1000371470 (5:149307233 C>A,T), RS1000398399 (5:149300805 G>A), RS1000420663 (5:149307493 C>T), RS1000434 (5:149285090 G>A), RS1000434812 (5:149278327 C>G,T), RS1000469287 (5:149282825 G>A,C)
Disease associations
OMIM: gene MIM:614410 | disease phenotypes:
GenCC curated gene-disease
Mondo (1): neuromuscular disease (MONDO:0019056)
Orphanet (1): Neuromuscular disease (Orphanet:68381)
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
1 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST001762_729 | Obesity-related traits | 9.000000e-06 |
EFO canonical traits (1, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0003939 | energy intake |
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D009468 | Neuromuscular Diseases | C10.668 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
PharmGKB variants
1 variants.
| Variant | Genes | Level | Score | #Clin annots | Drugs |
|---|---|---|---|---|---|
| rs1438692 | AFAP1L1 | 0.00 | 0 |
CTD chemical–gene interactions
42 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects cotreatment, increases expression, affects expression | 9 |
| bisphenol A | decreases expression, increases expression, decreases reaction, increases abundance | 2 |
| trichostatin A | increases expression | 2 |
| Panobinostat | affects cotreatment, increases expression | 2 |
| Benzo(a)pyrene | affects methylation | 2 |
| Phenylmercuric Acetate | affects cotreatment, increases expression | 2 |
| Aflatoxin B1 | decreases methylation, increases expression, increases methylation | 2 |
| FR900359 | affects phosphorylation | 1 |
| sotorasib | affects cotreatment, decreases expression | 1 |
| ginger extract | decreases expression, decreases reaction, increases abundance | 1 |
| pirinixic acid | increases activity, increases expression, affects binding | 1 |
| 2,5,2’,5’-tetrachlorobiphenyl | increases expression | 1 |
| sodium arsenite | increases expression | 1 |
| butyraldehyde | increases expression | 1 |
| potassium chromate(VI) | increases expression | 1 |
| aflatoxin B2 | decreases methylation, increases methylation | 1 |
| pentanal | increases expression | 1 |
| monomethylarsonous acid | increases expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | increases expression, affects cotreatment | 1 |
| abrine | decreases expression | 1 |
| dorsomorphin | increases expression, affects cotreatment | 1 |
| jinfukang | affects cotreatment, increases expression | 1 |
| incobotulinumtoxinA | decreases expression | 1 |
| trametinib | affects cotreatment, decreases expression | 1 |
| NVP-BKM120 | affects cotreatment, decreases expression | 1 |
| Sunitinib | increases expression | 1 |
| Acetaminophen | increases expression | 1 |
| Cisplatin | affects cotreatment, increases expression | 1 |
| Dexamethasone | increases expression | 1 |
| Diethylhexyl Phthalate | increases expression | 1 |
Clinical trials (associated diseases)
198 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00331656 | PHASE4 | UNKNOWN | Comparative Study of Non-Invasive Mask Ventilation vs Cuirass Ventilation in Patients With Acute Respiratory Failure. |
| NCT00994552 | PHASE4 | UNKNOWN | Comparison of Pressure Support and Pressure Control Ventilation in Chronic Respiratory Failure |
| NCT00839033 | PHASE3 | TERMINATED | Evaluation of a Mechanical Device During Acute Respiratory Failure in Patients With Neuromuscular Disorders |
| NCT00942227 | PHASE3 | COMPLETED | The Value of Traction in Treatment of Lumbar Radiculopathy |
| NCT00979108 | PHASE3 | COMPLETED | The Value of Traction in the Treatment of Cervical Radiculopathy |
| NCT01826487 | PHASE3 | COMPLETED | Phase 3 Study of Ataluren in Participants With Nonsense Mutation Duchenne Muscular Dystrophy (nmDMD) |
| NCT02090959 | PHASE3 | TERMINATED | An Extension Study of Ataluren (PTC124) in Participants With Nonsense Mutation Dystrophinopathy |
| NCT02436096 | PHASE3 | COMPLETED | A Study to Evaluate eFFIcacy and Safety of Sublingual TNX-102 SL Tablet Taken at Bedtime in Patients With fibRoMyalgia |
| NCT02829814 | PHASE3 | TERMINATED | Repeat of: A Study to Evaluate Efficacy and Safety of Sublingual TNX-102 SL Tablet Taken at Bedtime in Patients With Fibromyalgia |
| NCT03179631 | PHASE3 | COMPLETED | Long-Term Outcomes of Ataluren in Duchenne Muscular Dystrophy |
| NCT05126758 | PHASE3 | ACTIVE_NOT_RECRUITING | A Study of Deramiocel (CAP-1002) in Ambulatory and Non-Ambulatory Patients With Duchenne Muscular Dystrophy |
| NCT05156320 | PHASE3 | COMPLETED | Efficacy and Safety of Apitegromab in Patients With Later-Onset Spinal Muscular Atrophy Treated With Nusinersen or Risdiplam |
| NCT05337553 | PHASE3 | ACTIVE_NOT_RECRUITING | A Study to Evaluate the Efficacy and Safety of Taldefgrobep Alfa in Participants With Spinal Muscular Atrophy |
| NCT05626855 | PHASE3 | ACTIVE_NOT_RECRUITING | Long-Term Safety & Efficacy of Apitegromab in Patients With SMA Who Completed Previous Trials of Apitegromab |
| NCT06672237 | PHASE3 | RECRUITING | A Phase 3 Study of NTLA-2001 in ATTRv-PN |
| NCT01074359 | PHASE2 | TERMINATED | Safety and Efficacy Study of A0001 in Patients With the A3243G Mitochondrial DNA Point Mutation |
| NCT01371149 | PHASE2 | COMPLETED | Patient -Ventilator Interaction in Chronic Respiratory Failure |
| NCT02022072 | PHASE2 | TERMINATED | Evaluation of Vital Capacity |
| NCT03127514 | PHASE2 | COMPLETED | AMX0035 in Patients With Amyotrophic Lateral Sclerosis (ALS) |
| NCT03406780 | PHASE2 | COMPLETED | A Study of CAP-1002 in Ambulatory and Non-Ambulatory Patients With Duchenne Muscular Dystrophy |
| NCT03921528 | PHASE2 | COMPLETED | An Active Treatment Study of SRK-015 in Patients With Type 2 or Type 3 Spinal Muscular Atrophy |
| NCT05479981 | PHASE2 | COMPLETED | Extension of AOC 1001-CS1 (MARINA) Study in Adult Myotonic Dystrophy Type 1 (DM1) Patients |
| NCT06339580 | PHASE2 | RECRUITING | Assessment of Volume-targeted Ventilation in Patients With Neuromuscular Disease |
| NCT07071935 | PHASE2 | NOT_YET_RECRUITING | A Clinical Trial of Early Ventilation in Amyotrophic Lateral Sclerosis (EVENT ALS) |
| NCT07287189 | PHASE2 | RECRUITING | Phase 2 Study of SAT-3247 in Pediatric Ambulatory Patients |
| NCT00252252 | PHASE1 | COMPLETED | AutoVPAP Versus VPAP; Assessment of Sleep and Ventilation |
| NCT01560741 | PHASE1 | UNKNOWN | Telemedicine and Ventilator Titration in Chronic Respiratory Patients Initiating Non-invasive Ventilation |
| NCT01621984 | PHASE1 | COMPLETED | Therapeutic Riding and Neuromuscular Disease |
| NCT01758510 | PHASE1 | COMPLETED | Safety Study of HLA-haplo Matched Allogenic Bone Marrow Derived Stem Cell Treatment in Amyotrophic Lateral Sclerosis |
| NCT03440034 | PHASE1 | COMPLETED | Study of Pioglitazone in Sporadic Inclusion Body Myositis |
| NCT05730842 | PHASE1 | COMPLETED | Absorption, Metabolism, Excretion and Absolute Bioavailability of EDG-5506 in Healthy Volunteers |
| NCT03272802 | PHASE2/PHASE3 | UNKNOWN | Treatment Effect of Edaravone in Patients With Amyotrophic Lateral Sclerosis (ALS) |
| NCT00860951 | PHASE1/PHASE2 | COMPLETED | P300 Brain Computer Interface Keyboard to Operate Assistive Technology |
| NCT02362425 | PHASE1/PHASE2 | COMPLETED | Antioxidant Therapy in RYR1-Related Congenital Myopathy |
| NCT00001201 | Not specified | COMPLETED | Evaluation of Neuromuscular Disease |
| NCT00002044 | Not specified | COMPLETED | A Pilot Study To Evaluate the Effect of Retrovir (Zidovudine: AZT) in the Treatment of Human Immunodeficiency Virus (HIV) Associated Dementia and Neuromuscular Diseases |
| NCT00004553 | Not specified | COMPLETED | Electromyography to Diagnose Neuromuscular Disorders |
| NCT00015470 | Not specified | COMPLETED | Diagnostic Evaluation of Patients With Neuromuscular Disease |
| NCT00017745 | Not specified | COMPLETED | Phenotype/Genotype Correlations in Neuromuscular Disorders |
| NCT00695591 | Not specified | COMPLETED | Home Sleep Testing in Neuromuscular Disease Patients |
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): neuromuscular disease