AGBL5-IT1

Summary

AGBL5-IT1 (AGBL5 intronic transcript 1, HGNC:41484) is a long non-coding RNA gene on chromosome 2p23.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:41484
Approved symbol	AGBL5-IT1
Name	AGBL5 intronic transcript 1
Location	2p23.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000229122
Ensembl biotype	lncRNA
Entrez	106481744
RNAcentral	URS0000318C7A — lncRNA, 339 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000411862

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000411862 — 2 exons

Exon	Start	End
ENSE00001768404	27061038	27061206
ENSE00001799876	27061646	27061815

Expression profiles

Bgee: expression breadth ubiquitous, 132 present calls, max score 86.19.

Top tissues by expression

132 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	86.19	gold quality
hypothalamus	UBERON:0001898	74.48	gold quality
cortical plate	UBERON:0005343	73.13	gold quality
anterior cingulate cortex	UBERON:0009835	72.54	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	72.31	gold quality
adenohypophysis	UBERON:0002196	72.01	gold quality
ventricular zone	UBERON:0003053	71.90	gold quality
colonic epithelium	UBERON:0000397	71.78	gold quality
stromal cell of endometrium	CL:0002255	71.74	gold quality
bone marrow cell	CL:0002092	71.62	silver quality
substantia nigra	UBERON:0002038	71.46	gold quality
nucleus accumbens	UBERON:0001882	71.12	gold quality
ganglionic eminence	UBERON:0004023	71.07	gold quality
pituitary gland	UBERON:0000007	70.78	gold quality
amygdala	UBERON:0001876	70.77	gold quality
hindlimb stylopod muscle	UBERON:0004252	70.77	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	70.75	gold quality
Brodmann (1909) area 9	UBERON:0013540	70.73	gold quality
primary visual cortex	UBERON:0002436	70.71	gold quality
temporal lobe	UBERON:0001871	70.70	gold quality
Ammon’s horn	UBERON:0001954	70.68	gold quality
granulocyte	CL:0000094	70.62	gold quality
bone marrow	UBERON:0002371	70.60	gold quality
lower esophagus muscularis layer	UBERON:0035833	70.43	gold quality
lower esophagus	UBERON:0013473	70.30	gold quality
muscle layer of sigmoid colon	UBERON:0035805	70.29	gold quality
caudate nucleus	UBERON:0001873	70.26	gold quality
brain	UBERON:0000955	70.25	gold quality
cerebral cortex	UBERON:0000956	70.01	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	69.95	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.07

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.