AHCYL2
gene geneOn this page
Also known as KIAA0828long-IRBITIRBIT2ADOHCYASE3
Summary
AHCYL2 (adenosylhomocysteinase like 2, HGNC:22204) is a protein-coding gene on chromosome 7q32.1, encoding Adenosylhomocysteinase 3 (Q96HN2). May regulate the electrogenic sodium/bicarbonate cotransporter SLC4A4 activity and Mg(2+)-sensitivity.
The protein encoded by this gene acts as a homotetramer and may be involved in the conversion of S-adenosyl-L-homocysteine to L-homocysteine and adenosine. Several transcript variants encoding different isoforms have been found for this gene.
Source: NCBI Gene 23382 — RefSeq curated summary.
At a glance
- GWAS associations: 5
- Clinical variants (ClinVar): 94 total — 4 pathogenic
- MANE Select transcript:
NM_015328
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:22204 |
| Approved symbol | AHCYL2 |
| Name | adenosylhomocysteinase like 2 |
| Location | 7q32.1 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | KIAA0828, long-IRBIT, IRBIT2, ADOHCYASE3 |
| Ensembl gene | ENSG00000158467 |
| Ensembl biotype | protein_coding |
| OMIM | 616520 |
| Entrez | 23382 |
Gene structure
Transcript identifiers
Ensembl transcripts: 18 — 13 protein_coding, 3 retained_intron, 2 protein_coding_CDS_not_defined
ENST00000325006, ENST00000446544, ENST00000460109, ENST00000461161, ENST00000466924, ENST00000466993, ENST00000472554, ENST00000474594, ENST00000477028, ENST00000490911, ENST00000491079, ENST00000492628, ENST00000940557, ENST00000940558, ENST00000940559, ENST00000940560, ENST00000940561, ENST00000960231
RefSeq mRNA: 9 — MANE Select: NM_015328
NM_001130720, NM_001130722, NM_001130723, NM_001393386, NM_001393387, NM_001393388, NM_001393389, NM_001393390, NM_015328
CCDS: CCDS47706, CCDS47707, CCDS47708, CCDS5812
Canonical transcript exons
ENST00000325006 — 17 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001039048 | 129413594 | 129413688 |
| ENSE00001039059 | 129422840 | 129422938 |
| ENSE00001039061 | 129409476 | 129409546 |
| ENSE00001039070 | 129405836 | 129405899 |
| ENSE00001121588 | 129225030 | 129225439 |
| ENSE00001628341 | 129400290 | 129400384 |
| ENSE00001658936 | 129406378 | 129406466 |
| ENSE00001718925 | 129405097 | 129405213 |
| ENSE00001804977 | 129424874 | 129424942 |
| ENSE00001895409 | 129427039 | 129430211 |
| ENSE00003470458 | 129389634 | 129389734 |
| ENSE00003493539 | 129389056 | 129389199 |
| ENSE00003511469 | 129397222 | 129397324 |
| ENSE00003540490 | 129403379 | 129403485 |
| ENSE00003569768 | 129426443 | 129426563 |
| ENSE00003618669 | 129425063 | 129425141 |
| ENSE00003655191 | 129379638 | 129379749 |
Expression profiles
Bgee: expression breadth ubiquitous, 260 present calls, max score 98.83.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 12.8438 / max 367.7639, expressed in 1756 samples.
FANTOM5 promoters (21 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 81010 | 11.1826 | 1750 |
| 81019 | 0.3944 | 64 |
| 81014 | 0.2265 | 66 |
| 81020 | 0.1860 | 75 |
| 81018 | 0.1630 | 78 |
| 81017 | 0.1426 | 54 |
| 81015 | 0.1144 | 40 |
| 81031 | 0.0618 | 20 |
| 81024 | 0.0564 | 19 |
| 81013 | 0.0563 | 21 |
Top tissues by expression
289 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| rectum | UBERON:0001052 | 98.83 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 97.48 | gold quality |
| choroid plexus epithelium | UBERON:0003911 | 97.38 | gold quality |
| colonic mucosa | UBERON:0000317 | 96.49 | gold quality |
| gall bladder | UBERON:0002110 | 95.83 | gold quality |
| mucosa of sigmoid colon | UBERON:0004993 | 95.83 | gold quality |
| transverse colon | UBERON:0001157 | 94.07 | gold quality |
| adrenal tissue | UBERON:0018303 | 93.45 | gold quality |
| colonic epithelium | UBERON:0000397 | 92.76 | gold quality |
| pancreatic ductal cell | CL:0002079 | 92.61 | gold quality |
| pigmented layer of retina | UBERON:0001782 | 92.49 | gold quality |
| left lobe of thyroid gland | UBERON:0001120 | 92.01 | gold quality |
| right lobe of thyroid gland | UBERON:0001119 | 91.86 | gold quality |
| thyroid gland | UBERON:0002046 | 91.66 | gold quality |
| large intestine | UBERON:0000059 | 91.08 | gold quality |
| caudate nucleus | UBERON:0001873 | 90.93 | gold quality |
| colon | UBERON:0001155 | 90.84 | gold quality |
| right frontal lobe | UBERON:0002810 | 90.12 | gold quality |
| intestine | UBERON:0000160 | 90.06 | gold quality |
| duodenum | UBERON:0002114 | 90.01 | gold quality |
| nucleus accumbens | UBERON:0001882 | 89.91 | gold quality |
| ileal mucosa | UBERON:0000331 | 89.83 | gold quality |
| upper lobe of left lung | UBERON:0008952 | 89.64 | gold quality |
| gastrocnemius | UBERON:0001388 | 89.63 | gold quality |
| muscle of leg | UBERON:0001383 | 89.62 | gold quality |
| upper lobe of lung | UBERON:0008948 | 89.61 | gold quality |
| medial globus pallidus | UBERON:0002477 | 89.44 | gold quality |
| putamen | UBERON:0001874 | 89.27 | gold quality |
| hindlimb stylopod muscle | UBERON:0004252 | 88.80 | gold quality |
| lung | UBERON:0002048 | 88.46 | gold quality |
Single-cell (SCXA)
Detected in 4 experiment(s), a significant marker in 4.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-HCAD-35 | yes | 72.95 |
| E-CURD-119 | yes | 37.69 |
| E-GEOD-125970 | yes | 25.35 |
| E-ANND-3 | yes | 23.03 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
200 targeting AHCYL2, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-190A-3P | 100.00 | 80.35 | 5520 |
| HSA-MIR-5011-5P | 100.00 | 83.46 | 5820 |
| HSA-MIR-4747-5P | 100.00 | 67.90 | 2681 |
| HSA-MIR-5196-5P | 100.00 | 67.98 | 2761 |
| HSA-MIR-3646 | 100.00 | 73.56 | 5283 |
| HSA-MIR-5692A | 100.00 | 74.40 | 6850 |
| HSA-MIR-3613-3P | 100.00 | 76.36 | 7965 |
| HSA-MIR-3924 | 100.00 | 72.09 | 2394 |
| HSA-MIR-4531 | 99.99 | 69.70 | 3181 |
| HSA-MIR-34A-5P | 99.99 | 71.21 | 1784 |
| HSA-MIR-449A | 99.99 | 71.05 | 1776 |
| HSA-MIR-3667-3P | 99.99 | 67.17 | 1636 |
| HSA-MIR-6077 | 99.99 | 68.04 | 2299 |
| HSA-MIR-103A-3P | 99.98 | 69.14 | 1595 |
| HSA-MIR-107 | 99.98 | 69.14 | 1595 |
| HSA-MIR-520D-5P | 99.98 | 73.34 | 4883 |
| HSA-MIR-524-5P | 99.98 | 73.43 | 4882 |
| HSA-MIR-34C-5P | 99.97 | 70.45 | 1577 |
| HSA-MIR-449B-5P | 99.97 | 70.26 | 1580 |
| HSA-MIR-8075 | 99.97 | 67.20 | 962 |
| HSA-MIR-495-3P | 99.96 | 72.81 | 4197 |
| HSA-MIR-5688 | 99.96 | 73.23 | 4504 |
| HSA-MIR-3658 | 99.96 | 73.87 | 4379 |
| HSA-MIR-4666A-3P | 99.96 | 71.71 | 3434 |
| HSA-MIR-548AT-5P | 99.96 | 70.83 | 2666 |
| HSA-MIR-4458 | 99.96 | 71.64 | 1650 |
| HSA-MIR-6755-5P | 99.95 | 65.59 | 464 |
| HSA-MIR-9718 | 99.94 | 68.91 | 918 |
| HSA-MIR-1236-3P | 99.94 | 68.04 | 1695 |
| HSA-MIR-539-5P | 99.93 | 70.30 | 2855 |
Literature-anchored findings (GeneRIF, showing 1)
- Downregulation of KIAA0828 is associated with colon and lung carcinomas (PMID:16865262)
Cross-species orthologs
6 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | ahcyl2b | ENSDARG00000039343 |
| danio_rerio | ahcyl2a | ENSDARG00000051873 |
| mus_musculus | Ahcyl2 | ENSMUSG00000029772 |
| rattus_norvegicus | Ahcyl2 | ENSRNOG00000039300 |
| drosophila_melanogaster | AhcyL2 | FBGN0015011 |
| drosophila_melanogaster | AhcyL1 | FBGN0035371 |
Paralogs (2): AHCY (ENSG00000101444), AHCYL1 (ENSG00000168710)
Protein
Protein identifiers
Adenosylhomocysteinase 3 — Q96HN2 (reviewed: Q96HN2)
Alternative names: IP(3)Rs binding protein released with IP(3) 2, Long-IRBIT, S-adenosyl-L-homocysteine hydrolase 3, S-adenosylhomocysteine hydrolase-like protein 2
All UniProt accessions (4): Q96HN2, C9JZV7, C9K0S0, H0Y8B3
UniProt curated annotations — full annotation on UniProt →
Function. May regulate the electrogenic sodium/bicarbonate cotransporter SLC4A4 activity and Mg(2+)-sensitivity. On the contrary of its homolog AHCYL1, does not regulate ITPR1 sensitivity to inositol 1,4,5-trisphosphate.
Subunit / interactions. Homotetramer. Forms heteromultimers with AHCYL1 (via the C-terminal region). Interacts with ITPR1; with lower affinity than AHCYL1 and maybe via ITPR1. Interacts with SLC4A4. Interacts with ZCCHC4.
Subcellular location. Cytoplasm. Microsome.
Post-translational modifications. Phosphorylated during neuronal differentiation at the LISN domain.
Cofactor. Binds 1 NAD(+) per subunit.
Pathway. Amino-acid biosynthesis; L-homocysteine biosynthesis; L-homocysteine from S-adenosyl-L-homocysteine: step 1/1.
Similarity. Belongs to the adenosylhomocysteinase family.
Isoforms (4)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q96HN2-1 | 1 | yes |
| Q96HN2-2 | 2 | |
| Q96HN2-3 | 3 | |
| Q96HN2-4 | 4 |
RefSeq proteins (9): NP_001124192, NP_001124194, NP_001124195, NP_001380315, NP_001380316, NP_001380317, NP_001380318, NP_001380319, NP_056143* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000043 | Adenosylhomocysteinase-like | Family |
| IPR015878 | Ado_hCys_hydrolase_NAD-bd | Domain |
| IPR020082 | S-Ado-L-homoCys_hydrolase_CS | Conserved_site |
| IPR036291 | NAD(P)-bd_dom_sf | Homologous_superfamily |
| IPR042172 | Adenosylhomocyst_ase-like_sf | Homologous_superfamily |
Pfam: PF00670, PF05221
Catalyzed reactions (Rhea), 1 shown:
- S-adenosyl-L-homocysteine + H2O = L-homocysteine + adenosine (RHEA:21708)
UniProt features (71 total): helix 22, strand 13, binding site 12, modified residue 6, splice variant 5, compositionally biased region 5, turn 4, region of interest 2, initiator methionine 1, chain 1
Structure
Experimental structures (PDB)
1 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 3GVP | X-RAY DIFFRACTION | 2.25 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q96HN2-F1 | 80.14 | 0.69 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Ligand- & substrate-binding residues (12): 310; 335; 336–338; 365; 369; 370; 401–406; 422; 457; 478–479; 525; 236
Post-translational modifications (6): 2, 107, 149, 152, 155, 158
Function
Pathways and Gene Ontology
Reactome pathways
4 pathways
| ID | Pathway |
|---|---|
| R-HSA-425381 | Bicarbonate transporters |
| R-HSA-382551 | Transport of small molecules |
| R-HSA-425393 | |
| R-HSA-425407 | SLC-mediated transmembrane transport |
MSigDB gene sets: 251 (showing top):
TGCTGCT_MIR15A_MIR16_MIR15B_MIR195_MIR424_MIR497, KEGG_CYSTEINE_AND_METHIONINE_METABOLISM, GOZGIT_ESR1_TARGETS_DN, GRAESSMANN_APOPTOSIS_BY_DOXORUBICIN_UP, CACCAGC_MIR138, MODULE_205, GOBP_S_ADENOSYLMETHIONINE_METABOLIC_PROCESS, SHEDDEN_LUNG_CANCER_GOOD_SURVIVAL_A4, chr7q32, GOBP_ONE_CARBON_METABOLIC_PROCESS, SCHAEFFER_PROSTATE_DEVELOPMENT_48HR_UP, TTGGAGA_MIR5155P_MIR519E, GOCC_NEURON_PROJECTION, CCCAGAG_MIR326, BREDEMEYER_RAG_SIGNALING_NOT_VIA_ATM_UP
GO Biological Process (2): one-carbon metabolic process (GO:0006730), L-methionine cycle (GO:0033353)
GO Molecular Function (2): hydrolase activity (GO:0016787), protein binding (GO:0005515)
GO Cellular Component (4): cytosol (GO:0005829), neuron projection (GO:0043005), cytoplasm (GO:0005737), endoplasmic reticulum (GO:0005783)
Reactome top-level categories
Rollup of top-2 pathways:
| Category | Pathways |
|---|---|
| SLC-mediated transport of inorganic anions | 1 |
| Transport of small molecules | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cytoplasm | 2 |
| cellular anatomical structure | 2 |
| small molecule metabolic process | 1 |
| L-methionine metabolic process | 1 |
| modified amino acid metabolic process | 1 |
| purine ribonucleoside metabolic process | 1 |
| S-adenosylmethionine metabolic process | 1 |
| homocysteine metabolic process | 1 |
| catalytic activity | 1 |
| binding | 1 |
| plasma membrane bounded cell projection | 1 |
| intracellular anatomical structure | 1 |
| endomembrane system | 1 |
| intracellular membrane-bounded organelle | 1 |
Protein interactions and networks
STRING
2251 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| AHCYL2 | BHMT | Q93088 | 590 |
| AHCYL2 | SLC4A4 | Q9Y6R1 | 574 |
| AHCYL2 | BHMT2 | Q9H2M3 | 559 |
| AHCYL2 | CTH | P32929 | 550 |
| AHCYL2 | MTR | Q99707 | 541 |
| AHCYL2 | SHMT1 | P34896 | 527 |
| AHCYL2 | MAT1A | Q00266 | 523 |
| AHCYL2 | P0DN79 | P0DN79 | 522 |
| AHCYL2 | H7C2H4 | H7C2H4 | 521 |
| AHCYL2 | SHMT2 | P34897 | 521 |
| AHCYL2 | GNMT | Q14749 | 511 |
| AHCYL2 | MAT2A | P31153 | 483 |
| AHCYL2 | MTHFR | P42898 | 483 |
| AHCYL2 | MTHFD2 | P13995 | 438 |
| AHCYL2 | MARS1 | P56192 | 429 |
IntAct
128 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| HEXIM2 | AHCYL1 | psi-mi:“MI:0914”(association) | 0.740 |
| JOSD2 | AHCYL1 | psi-mi:“MI:0914”(association) | 0.740 |
| CAMKV | AP3B1 | psi-mi:“MI:0914”(association) | 0.640 |
| TGIF2LY | PGP | psi-mi:“MI:0914”(association) | 0.640 |
| NUAK2 | PPP1R12A | psi-mi:“MI:0914”(association) | 0.640 |
| HOXC9 | AHCYL1 | psi-mi:“MI:0914”(association) | 0.640 |
| DHX8 | AHCYL1 | psi-mi:“MI:0914”(association) | 0.640 |
| CEP72 | AHCYL1 | psi-mi:“MI:0914”(association) | 0.640 |
| ZNF414 | AHCYL1 | psi-mi:“MI:0914”(association) | 0.640 |
| tat | PPM1G | psi-mi:“MI:0914”(association) | 0.560 |
| ODAPH | TCAF2 | psi-mi:“MI:0914”(association) | 0.530 |
| PIP4K2A | AP3B1 | psi-mi:“MI:0914”(association) | 0.530 |
| FOXD4 | PDHX | psi-mi:“MI:0914”(association) | 0.530 |
| SOST | KPNA4 | psi-mi:“MI:0914”(association) | 0.530 |
| GREM2 | ZZEF1 | psi-mi:“MI:0914”(association) | 0.530 |
| RASL10B | AHCYL1 | psi-mi:“MI:0914”(association) | 0.530 |
| C1orf174 | AHCYL1 | psi-mi:“MI:0914”(association) | 0.530 |
| FBXW11 | AHCYL1 | psi-mi:“MI:0914”(association) | 0.530 |
| ABCF2 | AHCYL1 | psi-mi:“MI:0914”(association) | 0.530 |
| VSX2 | USP12 | psi-mi:“MI:0914”(association) | 0.530 |
| MSL1 | MSL3B | psi-mi:“MI:0914”(association) | 0.530 |
| ZNF263 | AHCYL1 | psi-mi:“MI:0914”(association) | 0.530 |
| FGF11 | CHD1 | psi-mi:“MI:0914”(association) | 0.530 |
| CSNK1E | ZSWIM8 | psi-mi:“MI:0914”(association) | 0.530 |
BioGRID (236): AHCYL2 (Affinity Capture-MS), AHCYL2 (Affinity Capture-MS), AHCYL2 (Affinity Capture-MS), AHCYL2 (Affinity Capture-MS), AHCYL2 (Affinity Capture-MS), AHCYL2 (Affinity Capture-MS), AHCYL2 (Affinity Capture-MS), AHCYL2 (Affinity Capture-MS), AHCYL2 (Affinity Capture-MS), AHCYL2 (Affinity Capture-MS), AHCYL2 (Affinity Capture-MS), AHCYL2 (Affinity Capture-MS), AHCYL2 (Affinity Capture-MS), AHCYL2 (Affinity Capture-MS), AHCYL2 (Affinity Capture-MS)
ESM2 similar proteins: A0A1D5AG16, A0A1S3XSG2, A0A1S4BDC4, A0MH68, A1ZB91, A2XV58, A2Y6Z7, A2ZAK8, A6QLP2, B3N538, B4GH42, B4HWV2, B4JE52, B4Q9T2, B5E0H4, D7PHZ4, H2A0M3, O24575, O42890, O80452, P12807, P23225, P46881, P84193, Q00681, Q07121, Q07123, Q07422, Q0JC10, Q12556, Q23695, Q382V9, Q4E409, Q4W9G3, Q53WK1, Q59118, Q68FL4, Q69RJ0, Q7XVN7, Q8GSM3
Diamond homologs: A0M5W6, A1V8Z2, A1WXM7, A2C620, A2S6W2, A3MQW7, A3NER1, A3P0L8, A3PFB5, A4G975, A5ENA7, A5FJK3, A5GI30, A6GW32, A6QLP2, A6T2Y9, A8G7D1, A9BD69, A9IGY5, A9KD88, B1Y647, B2AGG2, B2JIP4, B2S994, B2T6X2, B2U774, B3EDY3, B3QJT3, B3QMF5, B5DFN2, B6J3R0, B6J6H1, B9MD45, C0RFY3, O13639, O43865, O93477, P10760, P10819, P23526
SIGNOR signaling
2 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| AHCYL2 | “down-regulates activity” | PAPOLA | binding |
| AHCYL2 | “down-regulates activity” | PAPOLB | binding |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 159 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| regulation of intracellular pH | 6 | 26.4× | 9e-05 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
94 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 4 |
| Likely pathogenic | 0 |
| Uncertain significance | 69 |
| Likely benign | 0 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (4)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1527391 | GRCh37/hg19 7q31.33-33(chr7:123967475-132729981) | Pathogenic |
| 154485 | GRCh38/hg38 7q31.33-33(chr7:124170657-134163594)x1 | Pathogenic |
| 2685269 | GRCh37/hg19 7q31.33-32.2(chr7:127076892-129405807)x1 | Pathogenic |
| 60295 | GRCh38/hg38 7q31.33-32.3(chr7:126859732-132750936)x1 | Pathogenic |
SpliceAI
4526 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 7:129225436:GAAG:G | donor_gain | 1.0000 |
| 7:129225436:GAAGG:G | donor_loss | 1.0000 |
| 7:129225437:AAGGT:A | donor_loss | 1.0000 |
| 7:129225438:AGG:A | donor_loss | 1.0000 |
| 7:129379636:A:AG | acceptor_gain | 1.0000 |
| 7:129379637:G:GG | acceptor_gain | 1.0000 |
| 7:129379637:GCA:G | acceptor_gain | 1.0000 |
| 7:129379639:A:AG | acceptor_gain | 1.0000 |
| 7:129379640:G:GG | acceptor_gain | 1.0000 |
| 7:129379747:CAGG:C | donor_loss | 1.0000 |
| 7:129379748:AGGT:A | donor_loss | 1.0000 |
| 7:129379750:G:A | donor_loss | 1.0000 |
| 7:129379750:G:GG | donor_gain | 1.0000 |
| 7:129379751:T:A | donor_loss | 1.0000 |
| 7:129389054:A:AG | acceptor_gain | 1.0000 |
| 7:129389054:AGCG:A | acceptor_gain | 1.0000 |
| 7:129389055:G:GG | acceptor_gain | 1.0000 |
| 7:129389055:GC:G | acceptor_gain | 1.0000 |
| 7:129389055:GCGG:G | acceptor_gain | 1.0000 |
| 7:129389055:GCGGC:G | acceptor_gain | 1.0000 |
| 7:129389199:GGTAA:G | donor_loss | 1.0000 |
| 7:129389201:T:G | donor_loss | 1.0000 |
| 7:129397219:CAGGT:C | acceptor_loss | 1.0000 |
| 7:129397220:A:AG | acceptor_gain | 1.0000 |
| 7:129397220:AGGT:A | acceptor_gain | 1.0000 |
| 7:129397220:AGGTG:A | acceptor_loss | 1.0000 |
| 7:129397221:G:GG | acceptor_gain | 1.0000 |
| 7:129397221:GGT:G | acceptor_gain | 1.0000 |
| 7:129397221:GGTG:G | acceptor_gain | 1.0000 |
| 7:129397322:GTG:G | donor_gain | 1.0000 |
AlphaMissense
3986 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 7:129389190:G:C | A204P | 1.000 |
| 7:129389685:T:C | L224S | 1.000 |
| 7:129389706:G:A | G231D | 1.000 |
| 7:129397249:G:T | G250W | 1.000 |
| 7:129397264:T:A | W255R | 1.000 |
| 7:129397264:T:C | W255R | 1.000 |
| 7:129397278:C:A | N259K | 1.000 |
| 7:129397278:C:G | N259K | 1.000 |
| 7:129400307:T:A | W281R | 1.000 |
| 7:129400307:T:C | W281R | 1.000 |
| 7:129400342:T:G | C292W | 1.000 |
| 7:129403385:G:C | D309H | 1.000 |
| 7:129403385:G:T | D309Y | 1.000 |
| 7:129403386:A:T | D309V | 1.000 |
| 7:129403392:G:A | G311E | 1.000 |
| 7:129403395:G:A | G312E | 1.000 |
| 7:129403451:G:C | G331R | 1.000 |
| 7:129403452:G:A | G331D | 1.000 |
| 7:129403466:A:C | S336R | 1.000 |
| 7:129403468:T:A | S336R | 1.000 |
| 7:129403468:T:G | S336R | 1.000 |
| 7:129403475:G:A | G339R | 1.000 |
| 7:129403475:G:C | G339R | 1.000 |
| 7:129403476:G:A | G339E | 1.000 |
| 7:129403479:T:A | V340D | 1.000 |
| 7:129405099:T:C | L343P | 1.000 |
| 7:129405108:T:C | L346P | 1.000 |
| 7:129405138:C:A | A356D | 1.000 |
| 7:129405145:T:A | N358K | 1.000 |
| 7:129405145:T:G | N358K | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000012187 (7:129249672 G>A,T), RS1000020343 (7:129290468 T>C), RS1000041003 (7:129407247 G>A), RS1000045756 (7:129353442 C>T), RS1000055915 (7:129344920 C>T), RS1000059390 (7:129360248 C>G), RS1000095109 (7:129307061 A>C,G), RS1000104249 (7:129354666 A>G), RS1000110999 (7:129351754 C>T), RS1000114947 (7:129337410 A>T), RS1000119532 (7:129351730 G>A), RS1000135246 (7:129293095 G>A), RS1000146721 (7:129260909 C>G), RS1000168152 (7:129398340 T>A), RS1000180767 (7:129378379 A>T)
Disease associations
OMIM: gene MIM:616520 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
5 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST001371_11 | Inflammatory biomarkers | 2.000000e-06 |
| GCST003013_11 | White matter hyperintensity burden | 9.000000e-07 |
| GCST003013_25 | White matter hyperintensity burden | 8.000000e-07 |
| GCST90002383_437 | Hematocrit | 2.000000e-10 |
| GCST90002384_162 | Hemoglobin | 4.000000e-12 |
EFO canonical traits (3, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0005665 | white matter hyperintensity measurement |
| EFO:0004348 | hematocrit |
| EFO:0004509 | hemoglobin measurement |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
39 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | increases expression, increases methylation | 3 |
| bisphenol A | decreases expression, increases expression | 2 |
| Air Pollutants | affects expression, increases abundance, increases methylation | 2 |
| Benzo(a)pyrene | affects methylation, decreases expression | 2 |
| aristolochic acid I | decreases expression | 1 |
| bismuth tripotassium dicitrate | decreases expression | 1 |
| 2,4,6-tribromophenol | decreases expression | 1 |
| methylmercuric chloride | increases expression | 1 |
| decabromobiphenyl ether | decreases expression | 1 |
| sodium arsenite | affects cotreatment, increases abundance, increases expression | 1 |
| tetrabromobisphenol A | decreases expression | 1 |
| manganese chloride | affects cotreatment, increases abundance, increases expression | 1 |
| 4-aminophenylarsenoxide | affects binding, decreases reaction | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, increases expression | 1 |
| 2,2’,4,4’-tetrabromodiphenyl ether | decreases expression | 1 |
| pentabrominated diphenyl ether 100 | decreases expression | 1 |
| hexabrominated diphenyl ether 153 | decreases expression | 1 |
| LDN 193189 | increases expression, affects cotreatment | 1 |
| (+)-JQ1 compound | increases expression | 1 |
| Resveratrol | affects cotreatment, increases expression | 1 |
| Temozolomide | decreases expression | 1 |
| Sunitinib | increases expression | 1 |
| Arsenic Trioxide | decreases reaction, affects binding | 1 |
| Arsenic | affects cotreatment, increases abundance, increases expression | 1 |
| Atrazine | increases expression | 1 |
| Doxorubicin | decreases expression | 1 |
| Ivermectin | decreases expression | 1 |
| Manganese | affects cotreatment, increases abundance, increases expression | 1 |
| Nitrogen Oxides | affects expression, increases abundance, increases methylation | 1 |
Cellosaurus cell lines
1 cell lines: 1 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_D9XF | Ubigene HeLa AHCYL2 KO | Cancer cell line | Female |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.