AIRIM
gene geneOn this page
Also known as FLJ20508
Summary
AIRIM (AFG2 interacting ribosome maturation factor, HGNC:26039) is a protein-coding gene on chromosome 1p34.3, encoding AFG2-interacting ribosome maturation factor (Q9NX04). Part of the 55LCC heterohexameric ATPase complex which is chromatin-associated and promotes replisome proteostasis to maintain replication fork progression and genome stability. It is a common-essential gene (DepMap: required in 95.8% of cancer cell lines).
Involved in ribosomal large subunit biogenesis. Located in cytosol; nucleolus; and nucleoplasm.
Source: NCBI Gene 54955 — RefSeq curated summary.
At a glance
- GWAS associations: 2
- Clinical variants (ClinVar): 9 total
- Cancer dependency (DepMap): dependent in 95.8% of screened cell lines (common-essential)
- MANE Select transcript:
NM_001350770
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:26039 |
| Approved symbol | AIRIM |
| Name | AFG2 interacting ribosome maturation factor |
| Location | 1p34.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | FLJ20508 |
| Ensembl gene | ENSG00000116922 |
| Ensembl biotype | protein_coding |
| OMIM | 614799 |
| Entrez | 54955 |
Gene structure
Transcript identifiers
Ensembl transcripts: 35 — 29 protein_coding, 5 protein_coding_CDS_not_defined, 1 nonsense_mediated_decay
ENST00000358011, ENST00000461359, ENST00000464085, ENST00000464178, ENST00000472584, ENST00000477060, ENST00000486637, ENST00000488137, ENST00000491797, ENST00000491981, ENST00000494120, ENST00000498448, ENST00000609516, ENST00000619962, ENST00000895429, ENST00000895430, ENST00000895431, ENST00000895432, ENST00000895433, ENST00000895434, ENST00000895435, ENST00000895436, ENST00000895437, ENST00000895438, ENST00000895439, ENST00000895440, ENST00000911431, ENST00000911432, ENST00000911433, ENST00000962186, ENST00000962187, ENST00000962188, ENST00000962189, ENST00000962190, ENST00000962191
RefSeq mRNA: 20 — MANE Select: NM_001350770
NM_001303030, NM_001303031, NM_001350755, NM_001350756, NM_001350757, NM_001350758, NM_001350759, NM_001350760, NM_001350761, NM_001350762, NM_001350763, NM_001350764, NM_001350765, NM_001350766, NM_001350767, NM_001350768, NM_001350769, NM_001350770, NM_001350771, NM_017850
CCDS: CCDS423
Canonical transcript exons
ENST00000486637 — 5 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001838445 | 37690002 | 37690529 |
| ENSE00003516572 | 37681570 | 37683160 |
| ENSE00003706663 | 37689606 | 37689883 |
| ENSE00003785675 | 37683319 | 37683437 |
| ENSE00003790239 | 37686273 | 37686452 |
Expression profiles
Bgee: expression breadth ubiquitous, 265 present calls, max score 87.46.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 9.7536 / max 142.2393, expressed in 1741 samples.
FANTOM5 promoters (2 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 11792 | 7.1863 | 1670 |
| 11793 | 2.5673 | 1386 |
Top tissues by expression
280 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| ventricular zone | UBERON:0003053 | 87.46 | gold quality |
| stromal cell of endometrium | CL:0002255 | 87.17 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 87.16 | gold quality |
| right coronary artery | UBERON:0001625 | 85.24 | gold quality |
| ganglionic eminence | UBERON:0004023 | 85.24 | gold quality |
| right ovary | UBERON:0002118 | 84.54 | gold quality |
| calcaneal tendon | UBERON:0003701 | 84.42 | gold quality |
| left ovary | UBERON:0002119 | 84.12 | gold quality |
| body of uterus | UBERON:0009853 | 83.31 | gold quality |
| popliteal artery | UBERON:0002250 | 83.30 | gold quality |
| tibial artery | UBERON:0007610 | 83.29 | gold quality |
| gall bladder | UBERON:0002110 | 83.19 | gold quality |
| body of pancreas | UBERON:0001150 | 83.18 | gold quality |
| left adrenal gland | UBERON:0001234 | 83.16 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 83.08 | gold quality |
| right adrenal gland | UBERON:0001233 | 83.06 | gold quality |
| gastrocnemius | UBERON:0001388 | 82.98 | gold quality |
| minor salivary gland | UBERON:0001830 | 82.80 | gold quality |
| ovary | UBERON:0000992 | 82.79 | gold quality |
| aorta | UBERON:0000947 | 82.76 | gold quality |
| muscle of leg | UBERON:0001383 | 82.74 | gold quality |
| prefrontal cortex | UBERON:0000451 | 82.66 | gold quality |
| adrenal gland | UBERON:0002369 | 82.65 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 82.64 | gold quality |
| cortical plate | UBERON:0005343 | 82.63 | gold quality |
| left adrenal gland cortex | UBERON:0035825 | 82.63 | gold quality |
| left coronary artery | UBERON:0001626 | 82.57 | gold quality |
| lower esophagus | UBERON:0013473 | 82.54 | gold quality |
| lower esophagus muscularis layer | UBERON:0035833 | 82.54 | gold quality |
| skin of leg | UBERON:0001511 | 82.53 | gold quality |
Single-cell (SCXA)
Detected in 2 experiment(s), a significant marker in 0.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-MTAB-4850 | no | 258.62 |
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
73 targeting AIRIM, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4262 | 100.00 | 73.26 | 3931 |
| HSA-MIR-450A-1-3P | 100.00 | 69.33 | 1837 |
| HSA-MIR-3134 | 100.00 | 66.43 | 777 |
| HSA-MIR-181A-5P | 99.99 | 72.96 | 2995 |
| HSA-MIR-181B-5P | 99.99 | 72.97 | 2996 |
| HSA-MIR-181C-5P | 99.99 | 72.95 | 2996 |
| HSA-MIR-181D-5P | 99.99 | 73.04 | 2997 |
| HSA-MIR-607 | 99.97 | 73.62 | 5593 |
| HSA-MIR-3148 | 99.97 | 75.06 | 6478 |
| HSA-MIR-1250-3P | 99.96 | 70.04 | 4038 |
| HSA-MIR-8063 | 99.91 | 69.76 | 3146 |
| HSA-MIR-153-5P | 99.89 | 73.86 | 6317 |
| HSA-MIR-6780A-5P | 99.88 | 66.69 | 2776 |
| HSA-MIR-369-3P | 99.85 | 70.52 | 2264 |
| HSA-MIR-4495 | 99.82 | 72.08 | 3080 |
| HSA-MIR-202-5P | 99.78 | 67.65 | 991 |
| HSA-MIR-1273H-5P | 99.77 | 66.32 | 2471 |
| HSA-MIR-1299 | 99.77 | 71.24 | 2389 |
| HSA-MIR-548AG | 99.77 | 69.25 | 1492 |
| HSA-MIR-4766-5P | 99.75 | 69.23 | 2662 |
| HSA-MIR-4677-5P | 99.70 | 70.09 | 1940 |
| HSA-MIR-30B-3P | 99.70 | 65.76 | 2325 |
| HSA-MIR-3689A-3P | 99.70 | 65.73 | 2306 |
| HSA-MIR-3689B-3P | 99.70 | 65.71 | 2311 |
| HSA-MIR-3689C | 99.70 | 65.71 | 2311 |
| HSA-MIR-6779-5P | 99.70 | 65.76 | 2363 |
| HSA-MIR-548M | 99.70 | 68.87 | 1749 |
| HSA-MIR-379-3P | 99.69 | 69.60 | 1524 |
| HSA-MIR-411-3P | 99.69 | 69.63 | 1524 |
| HSA-MIR-548AI | 99.69 | 69.24 | 1494 |
Functional genomics
DepMap (CRISPR cell-line fitness): dependent in 95.8% of screened cell lines, common-essential.
Literature-anchored findings (GeneRIF, showing 3)
- our findings suggest that C1ORF109 may be the downstream target of protein kinase CK2 and involved in the regulation of cancer cell proliferation. (PMID:22548824)
- Labeling of heterochronic ribosomes reveals C1ORF109 and SPATA5 control a late step in human ribosome assembly. (PMID:35354024)
- C1orf109 promotes malignant phenotype of liver cancer via wnt signaling pathway in a CK2-dependent manner. (PMID:36988773)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | airim | ENSDARG00000012113 |
| mus_musculus | Airim | ENSMUSG00000044730 |
| rattus_norvegicus | Airim | ENSRNOG00000025065 |
Protein
Protein identifiers
AFG2-interacting ribosome maturation factor — Q9NX04 (reviewed: Q9NX04)
Alternative names: Ribosome biogenesis protein C1orf109
All UniProt accessions (7): A0A087WUX7, Q9NX04, V9GY35, V9GYI2, V9GYN4, V9GYQ8, V9GYT8
UniProt curated annotations — full annotation on UniProt →
Function. Part of the 55LCC heterohexameric ATPase complex which is chromatin-associated and promotes replisome proteostasis to maintain replication fork progression and genome stability. Required for replication fork progression, sister chromatid cohesion, and chromosome stability. The ATPase activity is specifically enhanced by replication fork DNA and is coupled to cysteine protease-dependent cleavage of replisome substrates in response to replication fork damage. Uses ATPase activity to process replisome substrates in S-phase, facilitating their proteolytic turnover from chromatin to ensure DNA replication and mitotic fidelity. Involved in the cytoplasmic maturation steps of pre-60S ribosomal particles by promoting the release of shuttling protein RSL24D1/RLP24 from the pre-ribosomal particles.
Subunit / interactions. Part of the 55LCC heterohexameric ATPase complex composed at least of AIRIM, AFG2A, AFG2B and CINP. Does not associate with pre-60S ribosomal particles.
Subcellular location. Nucleus. Cytoplasm.
Post-translational modifications. Phosphorylated on serines by CK2 kinase.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q9NX04-1 | 1 | yes |
| Q9NX04-2 | 2 |
RefSeq proteins (20): NP_001289959, NP_001289960, NP_001337684, NP_001337685, NP_001337686, NP_001337687, NP_001337688, NP_001337689, NP_001337690, NP_001337691, NP_001337692, NP_001337693, NP_001337694, NP_001337695, NP_001337696, NP_001337697, NP_001337698, NP_001337699, NP_001337700, NP_060320 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR029159 | CA109-like | Family |
Pfam: PF15011
UniProt features (9 total): mutagenesis site 6, splice variant 2, chain 1
Structure
Experimental structures (PDB)
2 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 9GWJ | X-RAY DIFFRACTION | 3.69 |
| 8RHN | ELECTRON MICROSCOPY | 4.5 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q9NX04-F1 | 94.17 | 0.88 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Mutagenesis-validated functional residues (6):
| Position | Phenotype |
|---|---|
| 63 | loss of interaction with cinp. no effect on interaction with interaction with afg2a and afg2b. |
| 69 | loss of interaction with cinp. no effect on interaction with interaction with afg2a and afg2b. |
| 73 | loss of interaction with cinp. no effect on interaction with interaction with afg2a and afg2b. |
| 104 | abolishes phosphorylation by ck2 kinase; when associated with a-134 and a-182. |
| 134 | abolishes phosphorylation by ck2 kinase; when associated with a-104 and a-182. |
| 182 | abolishes phosphorylation by ck2 kinase; when associated with a-104 and a-134. |
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 115 (showing top):
GOBP_RIBOSOME_BIOGENESIS, GOBP_REGULATION_OF_CELLULAR_COMPONENT_BIOGENESIS, MONNIER_POSTRADIATION_TUMOR_ESCAPE_UP, WEI_MYCN_TARGETS_WITH_E_BOX, chr1p34, ZHOU_INFLAMMATORY_RESPONSE_LIVE_DN, DODD_NASOPHARYNGEAL_CARCINOMA_UP, CCAGGGG_MIR331, GOBP_RIBONUCLEOPROTEIN_COMPLEX_BIOGENESIS, GOBP_RIBOSOMAL_LARGE_SUBUNIT_BIOGENESIS, GOBP_DNA_REPLICATION, MARSON_BOUND_BY_E2F4_UNSTIMULATED, GOCC_ATPASE_COMPLEX, GOCC_NUCLEOLUS, GOBP_DNA_METABOLIC_PROCESS
GO Biological Process (2): ribosomal large subunit biogenesis (GO:0042273), ribosome biogenesis (GO:0042254)
GO Molecular Function (1): protein binding (GO:0005515)
GO Cellular Component (5): nucleus (GO:0005634), nucleoplasm (GO:0005654), nucleolus (GO:0005730), cytoplasm (GO:0005737), cytosol (GO:0005829)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 3 |
| ribonucleoprotein complex biogenesis | 2 |
| nuclear lumen | 2 |
| ribosome biogenesis | 1 |
| binding | 1 |
| intracellular membrane-bounded organelle | 1 |
| intracellular membraneless organelle | 1 |
| intracellular anatomical structure | 1 |
| cytoplasm | 1 |
Protein interactions and networks
STRING
640 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| AIRIM | CINP | Q9BW66 | 592 |
| AIRIM | TMEM239 | Q8WW34 | 580 |
| AIRIM | MTBP | Q96DY7 | 472 |
| AIRIM | SPC24 | Q8NBT2 | 455 |
| AIRIM | ZBED8 | Q8IZ13 | 432 |
| AIRIM | TTC33 | Q6PID6 | 400 |
| AIRIM | LRRC61 | Q9BV99 | 400 |
| AIRIM | RMP64 | Q6NW34 | 397 |
| AIRIM | SNRNP48 | Q6IEG0 | 389 |
| AIRIM | ASPHD2 | Q6ICH7 | 378 |
| AIRIM | AHCTF1 | Q8WYP5 | 375 |
| AIRIM | TMEM60 | Q9H2L4 | 369 |
| AIRIM | AUNIP | Q9H7T9 | 369 |
| AIRIM | AFG2B | Q9BVQ7 | 353 |
| AIRIM | IFFO1 | Q0D2I5 | 351 |
| AIRIM | KIAA1586 | Q9HCI6 | 351 |
IntAct
549 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| AIRIM | CINP | psi-mi:“MI:0915”(physical association) | 0.920 |
| CINP | AIRIM | psi-mi:“MI:0915”(physical association) | 0.920 |
| AIRIM | ZBED1 | psi-mi:“MI:0915”(physical association) | 0.780 |
| ZBED1 | AIRIM | psi-mi:“MI:0915”(physical association) | 0.780 |
| AIRIM | CEP55 | psi-mi:“MI:0915”(physical association) | 0.720 |
| AIRIM | NECAB2 | psi-mi:“MI:0915”(physical association) | 0.720 |
| AIRIM | TADA2A | psi-mi:“MI:0915”(physical association) | 0.720 |
| STX11 | AIRIM | psi-mi:“MI:0915”(physical association) | 0.720 |
| AIRIM | KRT19 | psi-mi:“MI:0915”(physical association) | 0.720 |
| AIRIM | TRAF1 | psi-mi:“MI:0915”(physical association) | 0.720 |
| KRT31 | AIRIM | psi-mi:“MI:0915”(physical association) | 0.720 |
| RINT1 | AIRIM | psi-mi:“MI:0915”(physical association) | 0.720 |
| AIRIM | IHO1 | psi-mi:“MI:0915”(physical association) | 0.720 |
| AIRIM | VPS52 | psi-mi:“MI:0915”(physical association) | 0.720 |
| AIRIM | LZTS2 | psi-mi:“MI:0915”(physical association) | 0.720 |
| KATNAL1 | AIRIM | psi-mi:“MI:0915”(physical association) | 0.720 |
| TRIM54 | AIRIM | psi-mi:“MI:0915”(physical association) | 0.720 |
| AIRIM | RNF41 | psi-mi:“MI:0915”(physical association) | 0.720 |
| AIRIM | TFIP11 | psi-mi:“MI:0915”(physical association) | 0.720 |
| AIRIM | IKZF3 | psi-mi:“MI:0915”(physical association) | 0.720 |
| NECAB2 | AIRIM | psi-mi:“MI:0915”(physical association) | 0.720 |
| KRT19 | AIRIM | psi-mi:“MI:0915”(physical association) | 0.720 |
| TRAF1 | AIRIM | psi-mi:“MI:0915”(physical association) | 0.720 |
BioGRID (191): C1orf109 (Two-hybrid), C1orf109 (Two-hybrid), C1orf109 (Two-hybrid), C1orf109 (Two-hybrid), C1orf109 (Two-hybrid), C1orf109 (Two-hybrid), C1orf109 (Two-hybrid), C1orf109 (Two-hybrid), C1orf109 (Two-hybrid), C1orf109 (Two-hybrid), C1orf109 (Two-hybrid), C1orf109 (Two-hybrid), C1orf109 (Two-hybrid), C1orf109 (Two-hybrid), C1orf109 (Two-hybrid)
ESM2 similar proteins: A0A0B4K7J2, A0A8W7Q4I4, A3N0I5, A4GCJ9, A5PK29, A7MEF1, A8C8J6, A8GDD4, A8GG50, B2SYW1, B3H1G2, B3R8A8, B4I608, B4QAF0, F7IW82, O84621, O86418, P03487, P0C267, P0DOF4, P0DOF7, P10355, P22047, P35937, P63234, P73889, P74103, Q0A2E3, Q13U06, Q2ICQ8, Q2PIK4, Q2PIM0, Q2PIM4, Q30NP9, Q38SQ6, Q3TC33, Q3YPZ3, Q44212, Q463X3, Q67161
Diamond homologs: Q28I03, Q499E6, Q8JHH5, Q9NX04
SIGNOR signaling
1 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| AIRIM | “form complex” | “SPATA5-SPATA5L1 ATPase complex” | binding |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 70 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Formation of the cornified envelope | 7 | 18.6× | 1e-05 |
| Keratinization | 7 | 11.8× | 1e-04 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| morphogenesis of an epithelium | 7 | 39.5× | 2e-07 |
| intermediate filament organization | 7 | 27.6× | 1e-06 |
| epithelial cell differentiation | 5 | 14.4× | 3e-03 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
9 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 2 |
| Likely benign | 1 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
955 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 1:37683158:TAT:T | acceptor_gain | 1.0000 |
| 1:37683158:TATCT:T | acceptor_loss | 1.0000 |
| 1:37683160:TCTGA:T | acceptor_loss | 1.0000 |
| 1:37683161:C:CC | acceptor_gain | 1.0000 |
| 1:37683161:CT:C | acceptor_loss | 1.0000 |
| 1:37683162:T:C | acceptor_loss | 1.0000 |
| 1:37686272:CGA:C | donor_gain | 1.0000 |
| 1:37686293:AATAT:A | donor_gain | 1.0000 |
| 1:37686336:A:AC | donor_gain | 1.0000 |
| 1:37686337:C:CC | donor_gain | 1.0000 |
| 1:37686337:CTG:C | donor_gain | 1.0000 |
| 1:37686448:TGGCT:T | acceptor_gain | 1.0000 |
| 1:37686449:GGCT:G | acceptor_gain | 1.0000 |
| 1:37686450:GCTC:G | acceptor_loss | 1.0000 |
| 1:37686451:CT:C | acceptor_gain | 1.0000 |
| 1:37686452:TCTGC:T | acceptor_loss | 1.0000 |
| 1:37686453:C:CC | acceptor_gain | 1.0000 |
| 1:37686453:CTGC:C | acceptor_loss | 1.0000 |
| 1:37686454:T:G | acceptor_loss | 1.0000 |
| 1:37689604:A:AC | donor_gain | 1.0000 |
| 1:37689604:ACAGC:A | donor_gain | 1.0000 |
| 1:37689605:C:CC | donor_gain | 1.0000 |
| 1:37689605:CAG:C | donor_gain | 1.0000 |
| 1:37689605:CAGCC:C | donor_gain | 1.0000 |
| 1:37689612:T:A | donor_gain | 1.0000 |
| 1:37689619:G:C | donor_gain | 1.0000 |
| 1:37689656:A:AC | donor_gain | 1.0000 |
| 1:37689656:ACG:A | donor_gain | 1.0000 |
| 1:37689657:C:CC | donor_gain | 1.0000 |
| 1:37689657:CG:C | donor_gain | 1.0000 |
AlphaMissense
715 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 1:37689683:G:C | F66L | 0.949 |
| 1:37689683:G:T | F66L | 0.949 |
| 1:37689685:A:G | F66L | 0.949 |
| 1:37689663:A:G | L73P | 0.923 |
| 1:37689735:A:G | L49P | 0.897 |
| 1:37689799:A:G | W28R | 0.887 |
| 1:37689799:A:T | W28R | 0.887 |
| 1:37689827:G:C | F18L | 0.879 |
| 1:37689827:G:T | F18L | 0.879 |
| 1:37689829:A:G | F18L | 0.879 |
| 1:37689840:A:G | L14P | 0.876 |
| 1:37689828:A:G | F18S | 0.873 |
| 1:37686432:C:G | R99P | 0.871 |
| 1:37689756:A:G | L42P | 0.864 |
| 1:37689730:C:G | A51P | 0.862 |
| 1:37689639:C:T | G81D | 0.853 |
| 1:37689653:C:A | K76N | 0.848 |
| 1:37689653:C:G | K76N | 0.848 |
| 1:37689737:C:A | Q48H | 0.844 |
| 1:37689737:C:G | Q48H | 0.844 |
| 1:37689744:G:T | A46E | 0.837 |
| 1:37689675:A:G | L69S | 0.836 |
| 1:37689745:C:G | A46P | 0.830 |
| 1:37689828:A:C | F18C | 0.824 |
| 1:37689756:A:T | L42H | 0.823 |
| 1:37689797:C:A | W28C | 0.819 |
| 1:37689797:C:G | W28C | 0.819 |
| 1:37686423:A:T | V102D | 0.805 |
| 1:37689640:C:G | G81R | 0.804 |
| 1:37689684:A:G | F66S | 0.800 |
dbSNP variants (sampled 300 via entrez): RS1000159373 (1:37687826 G>C), RS1000316293 (1:37688188 C>T), RS1000468782 (1:37691486 C>T), RS1000496392 (1:37686764 G>A,T), RS1000823175 (1:37691036 G>C), RS1001104245 (1:37692150 A>C), RS1001147502 (1:37690485 A>C,T), RS1001206307 (1:37690624 C>T), RS1001287945 (1:37687448 T>A), RS1001416104 (1:37684448 C>G,T), RS1001764068 (1:37684179 A>C,T), RS1001945945 (1:37692632 C>A), RS1002159646 (1:37691930 C>A,G,T), RS1002211938 (1:37692100 A>G), RS1002363912 (1:37685507 A>G)
Disease associations
OMIM: gene MIM:614799 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
2 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST002115_4 | Axial length | 4.000000e-13 |
| GCST003476_2 | Eyebrow thickness | 7.000000e-06 |
EFO canonical traits (1, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0005318 | axial length measurement |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
25 total (human), top 25 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Air Pollutants | increases oxidation, increases expression, affects cotreatment, decreases expression, increases abundance | 3 |
| Tetrachlorodibenzodioxin | decreases expression | 2 |
| Particulate Matter | decreases expression, increases abundance, increases expression | 2 |
| aristolochic acid I | increases expression | 1 |
| alpha-pinene | affects cotreatment, decreases expression, increases oxidation, increases abundance | 1 |
| bisphenol A | affects cotreatment, decreases methylation | 1 |
| sodium arsenite | increases expression | 1 |
| methacrylaldehyde | increases oxidation, increases abundance, affects cotreatment, decreases expression | 1 |
| 2-palmitoylglycerol | increases expression | 1 |
| Bortezomib | increases expression | 1 |
| Sunitinib | increases expression | 1 |
| Fulvestrant | affects cotreatment, decreases methylation | 1 |
| Acrolein | increases abundance, affects cotreatment, decreases expression, increases oxidation | 1 |
| Benzo(a)pyrene | decreases methylation | 1 |
| Estradiol | increases expression | 1 |
| Hydrogen Peroxide | decreases expression | 1 |
| Ozone | decreases expression, increases oxidation, increases abundance, affects cotreatment | 1 |
| Phthalic Acids | affects methylation | 1 |
| Silicon Dioxide | increases expression | 1 |
| Smoke | decreases expression | 1 |
| Dronabinol | decreases expression | 1 |
| Tobacco Smoke Pollution | increases expression | 1 |
| Valproic Acid | increases expression, increases methylation | 1 |
| Cyclosporine | increases expression | 1 |
| Volatile Organic Compounds | affects cotreatment, decreases expression, increases oxidation | 1 |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.