AK5
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Summary
AK5 (adenylate kinase 5, HGNC:365) is a protein-coding gene on chromosome 1p31.1, encoding Adenylate kinase isoenzyme 5 (Q9Y6K8). Nucleoside monophosphate (NMP) kinase that catalyzes the reversible transfer of the terminal phosphate group between nucleoside triphosphates and monophosphates.
This gene encodes a member of the adenylate kinase family, which is involved in regulating the adenine nucleotide composition within a cell by catalyzing the reversible transfer of phosphate groups among adenine nucleotides. This member is related to the UMP/CMP kinase of several species. It is located in the cytosol and expressed exclusively in brain. Alternatively spliced transcript variants encoding distinct isoforms have been identified for this gene.
Source: NCBI Gene 26289 — RefSeq curated summary.
At a glance
- GWAS associations: 23
- Clinical variants (ClinVar): 89 total
- MANE Select transcript:
NM_174858
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:365 |
| Approved symbol | AK5 |
| Name | adenylate kinase 5 |
| Location | 1p31.1 |
| Locus type | gene with protein product |
| Status | Approved |
| Ensembl gene | ENSG00000154027 |
| Ensembl biotype | protein_coding |
| OMIM | 608009 |
| Entrez | 26289 |
Gene structure
Transcript identifiers
Ensembl transcripts: 13 — 4 protein_coding_CDS_not_defined, 4 protein_coding, 4 retained_intron, 1 nonsense_mediated_decay
ENST00000317704, ENST00000344720, ENST00000354567, ENST00000465146, ENST00000466114, ENST00000466393, ENST00000469394, ENST00000478255, ENST00000478407, ENST00000524494, ENST00000527263, ENST00000530826, ENST00000531672
RefSeq mRNA: 2 — MANE Select: NM_174858
NM_012093, NM_174858
CCDS: CCDS675, CCDS676
Canonical transcript exons
ENST00000354567 — 14 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001218273 | 77340377 | 77340568 |
| ENSE00001350830 | 77558602 | 77559966 |
| ENSE00002275608 | 77282019 | 77282373 |
| ENSE00003473773 | 77286941 | 77287127 |
| ENSE00003501802 | 77297834 | 77297947 |
| ENSE00003504003 | 77521827 | 77521943 |
| ENSE00003516281 | 77297559 | 77297728 |
| ENSE00003526108 | 77293793 | 77293960 |
| ENSE00003533919 | 77410981 | 77411071 |
| ENSE00003578233 | 77535847 | 77536038 |
| ENSE00003591391 | 77486308 | 77486352 |
| ENSE00003611289 | 77518564 | 77518727 |
| ENSE00003626711 | 77483317 | 77483359 |
| ENSE00003680507 | 77417639 | 77417715 |
Expression profiles
Bgee: expression breadth ubiquitous, 205 present calls, max score 99.33.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 22.0725 / max 803.8024, expressed in 1181 samples.
FANTOM5 promoters (17 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 3586 | 14.7992 | 1110 |
| 3594 | 2.2644 | 354 |
| 3587 | 1.4262 | 358 |
| 3585 | 0.9907 | 407 |
| 3583 | 0.7858 | 259 |
| 3581 | 0.5306 | 195 |
| 3592 | 0.2209 | 59 |
| 3602 | 0.1941 | 85 |
| 3589 | 0.1895 | 82 |
| 3590 | 0.1691 | 56 |
Top tissues by expression
286 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| middle temporal gyrus | UBERON:0002771 | 99.33 | gold quality |
| superior frontal gyrus | UBERON:0002661 | 98.94 | gold quality |
| CA1 field of hippocampus | UBERON:0003881 | 98.88 | gold quality |
| Brodmann (1909) area 23 | UBERON:0013554 | 98.86 | gold quality |
| postcentral gyrus | UBERON:0002581 | 98.81 | gold quality |
| orbitofrontal cortex | UBERON:0004167 | 98.81 | gold quality |
| prefrontal cortex | UBERON:0000451 | 98.52 | gold quality |
| entorhinal cortex | UBERON:0002728 | 98.49 | gold quality |
| Brodmann (1909) area 46 | UBERON:0006483 | 98.42 | gold quality |
| parietal lobe | UBERON:0001872 | 98.37 | gold quality |
| Brodmann (1909) area 9 | UBERON:0013540 | 97.97 | gold quality |
| dorsolateral prefrontal cortex | UBERON:0009834 | 97.88 | gold quality |
| Ammon’s horn | UBERON:0001954 | 97.78 | gold quality |
| endothelial cell | CL:0000115 | 97.68 | gold quality |
| primary visual cortex | UBERON:0002436 | 97.59 | gold quality |
| frontal cortex | UBERON:0001870 | 97.54 | gold quality |
| temporal lobe | UBERON:0001871 | 97.35 | gold quality |
| cingulate cortex | UBERON:0003027 | 96.96 | gold quality |
| anterior cingulate cortex | UBERON:0009835 | 96.96 | gold quality |
| neocortex | UBERON:0001950 | 96.95 | gold quality |
| cerebral cortex | UBERON:0000956 | 96.89 | gold quality |
| occipital lobe | UBERON:0002021 | 96.85 | gold quality |
| amygdala | UBERON:0001876 | 96.69 | gold quality |
| nucleus accumbens | UBERON:0001882 | 96.43 | gold quality |
| telencephalon | UBERON:0001893 | 96.25 | gold quality |
| right frontal lobe | UBERON:0002810 | 95.94 | gold quality |
| C1 segment of cervical spinal cord | UBERON:0006469 | 95.30 | gold quality |
| corpus callosum | UBERON:0002336 | 95.25 | gold quality |
| secondary oocyte | CL:0000655 | 94.70 | gold quality |
| caudate nucleus | UBERON:0001873 | 93.83 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 5.47 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): NR4A3
miRNA regulators (miRDB)
50 targeting AK5, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-5692A | 100.00 | 74.40 | 6850 |
| HSA-MIR-4531 | 99.99 | 69.70 | 3181 |
| HSA-MIR-3662 | 99.99 | 73.82 | 5684 |
| HSA-MIR-6888-3P | 99.97 | 65.95 | 1170 |
| HSA-MIR-493-5P | 99.96 | 72.47 | 2382 |
| HSA-MIR-5688 | 99.96 | 73.23 | 4504 |
| HSA-MIR-495-3P | 99.96 | 72.81 | 4197 |
| HSA-MIR-551B-5P | 99.96 | 71.28 | 3493 |
| HSA-LET-7C-3P | 99.95 | 73.42 | 2862 |
| HSA-MIR-450B-5P | 99.92 | 71.48 | 3175 |
| HSA-MIR-3680-3P | 99.75 | 72.51 | 3095 |
| HSA-MIR-1255A | 99.74 | 68.09 | 744 |
| HSA-MIR-1255B-5P | 99.74 | 68.16 | 741 |
| HSA-MIR-494-3P | 99.70 | 71.45 | 2795 |
| HSA-MIR-33A-3P | 99.70 | 70.27 | 3362 |
| HSA-MIR-4729 | 99.69 | 72.18 | 4233 |
| HSA-MIR-7156-5P | 99.64 | 68.81 | 1369 |
| HSA-MIR-4743-3P | 99.62 | 68.12 | 2095 |
| HSA-MIR-6073 | 99.60 | 70.36 | 793 |
| HSA-MIR-6832-5P | 99.58 | 64.82 | 1132 |
| HSA-MIR-4273 | 99.45 | 67.93 | 1206 |
| HSA-MIR-19A-5P | 99.36 | 66.93 | 1675 |
| HSA-MIR-19B-1-5P | 99.36 | 67.07 | 1669 |
| HSA-MIR-19B-2-5P | 99.36 | 67.07 | 1669 |
| HSA-MIR-642A-3P | 99.23 | 67.67 | 1258 |
| HSA-MIR-642B-3P | 99.23 | 67.67 | 1258 |
| HSA-MIR-6739-3P | 99.22 | 68.84 | 1843 |
| HSA-MIR-196A-3P | 99.19 | 67.34 | 1204 |
| HSA-MIR-361-5P | 98.95 | 70.16 | 1340 |
| HSA-MIR-374A-3P | 98.87 | 67.82 | 1531 |
Literature-anchored findings (GeneRIF, showing 4)
- Data demonstrate that human adenylate kinase 5 has two separate functional domains and that both have enzymatic activity. (PMID:19647735)
- Results indicate that AK5 expression significantly decreased in temporal lobe epilepsy: the expression of AK5 in epileptic brain tissue may play important roles in epilepsy, especially refractory epilepsy (PMID:27288770)
- AK5, a novel prognosis marker, inhibits apoptosis and promotes autophagy as well as proliferation in human gastric cancer. (PMID:31799658)
- Identification of novel DNA hypermethylation of the adenylate kinase 5 promoter in colorectal adenocarcinoma. (PMID:34135408)
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | ak5l | ENSDARG00000017739 |
| mus_musculus | Ak5 | ENSMUSG00000039058 |
| rattus_norvegicus | Ak5 | ENSRNOG00000046947 |
| drosophila_melanogaster | CG9541 | FBGN0032083 |
| caenorhabditis_elegans | WBGENE00008746 |
Paralogs (9): AK2 (ENSG00000004455), AK1 (ENSG00000106992), AK7 (ENSG00000140057), AK3 (ENSG00000147853), AK9 (ENSG00000155085), CMPK1 (ENSG00000162368), AK4 (ENSG00000162433), AK8 (ENSG00000165695), AK4P3 (ENSG00000233381)
Protein
Protein identifiers
Adenylate kinase isoenzyme 5 — Q9Y6K8 (reviewed: Q9Y6K8)
Alternative names: ATP-AMP transphosphorylase 5
All UniProt accessions (4): Q9Y6K8, E9PIS7, E9PQQ8, H0YEZ1
UniProt curated annotations — full annotation on UniProt →
Function. Nucleoside monophosphate (NMP) kinase that catalyzes the reversible transfer of the terminal phosphate group between nucleoside triphosphates and monophosphates. Active on AMP and dAMP with ATP as a donor. When GTP is used as phosphate donor, the enzyme phosphorylates AMP, CMP, and to a small extent dCMP. Also displays broad nucleoside diphosphate kinase activity.
Subunit / interactions. Monomer. Interacts with YWHAZ.
Subcellular location. Cytoplasm.
Tissue specificity. Brain specific.
Miscellaneous. It is unsure whether Met-1 or Met-5 is the initiator.
Similarity. Belongs to the adenylate kinase family.
Isoforms (3)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q9Y6K8-1 | 1 | yes |
| Q9Y6K8-2 | 2 | |
| Q9Y6K8-3 | 3, Adenylate kinase 6 |
RefSeq proteins (2): NP_036225, NP_777283* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000850 | Adenylat/UMP-CMP_kin | Family |
| IPR006267 | AK1/5 | Family |
| IPR027417 | P-loop_NTPase | Homologous_superfamily |
| IPR033690 | Adenylat_kinase_CS | Conserved_site |
Pfam: PF00406
Enzyme classification (BRENDA):
- EC 2.7.4.3 — adenylate kinase (BRENDA: 73 organisms, 259 substrates, 134 inhibitors, 192 Km, 47 kcat entries)
Substrate kinetics (BRENDA)
9 substrates with measured Km, best-characterized 9. Km ranges are aggregated across organisms/conditions.
| Substrate | Km (mM) | Measurements |
|---|---|---|
| AMP | 0.0014–1.9 | 59 |
| ATP | 0.0001–7 | 58 |
| ADP | 0.003–16.8 | 27 |
| 2 ADP | 0.006–0.15 | 5 |
| DAMP | 0.507–2 | 2 |
| 2’-DAMP | 0.85 | 1 |
| 7-DEAZAADENOSINE 5’-MONOPHOSPHATE | 0.73 | 1 |
| ADP3- | 0.03 | 1 |
| CMP | 0.0002 | 1 |
Catalyzed reactions (Rhea), 3 shown:
- AMP + ATP = 2 ADP (RHEA:12973)
- a ribonucleoside 5’-diphosphate + ATP = a ribonucleoside 5’-triphosphate + ADP (RHEA:18113)
- a 2’-deoxyribonucleoside 5’-diphosphate + ATP = a 2’-deoxyribonucleoside 5’-triphosphate + ADP (RHEA:44640)
UniProt features (49 total): binding site 17, helix 9, sequence conflict 8, region of interest 6, strand 5, splice variant 2, chain 1, sequence variant 1
Structure
Experimental structures (PDB)
1 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 2BWJ | X-RAY DIFFRACTION | 2.3 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q9Y6K8-F1 | 78.51 | 0.43 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Ligand- & substrate-binding residues (17): 219–222; 226; 257; 263; 274; 386–391; 407; 412; 433–435; 462–465; 469; 500 …
Function
Pathways and Gene Ontology
Reactome pathways
3 pathways
| ID | Pathway |
|---|---|
| R-HSA-499943 | Interconversion of nucleotide di- and triphosphates |
| R-HSA-1430728 | Metabolism |
| R-HSA-15869 | Metabolism of nucleotides |
MSigDB gene sets: 190 (showing top):
GOBP_NUCLEOSIDE_DIPHOSPHATE_METABOLIC_PROCESS, GOBP_ORGANOPHOSPHATE_METABOLIC_PROCESS, GOBP_NUCLEOSIDE_PHOSPHATE_BIOSYNTHETIC_PROCESS, GOBP_ORGANOPHOSPHATE_BIOSYNTHETIC_PROCESS, GOBP_CARBOHYDRATE_DERIVATIVE_METABOLIC_PROCESS, GOBP_NUCLEOBASE_CONTAINING_SMALL_MOLECULE_METABOLIC_PROCESS, LEE_NAIVE_T_LYMPHOCYTE, GOBP_PYRIMIDINE_NUCLEOTIDE_METABOLIC_PROCESS, AP1_Q4_01, ROZANOV_MMP14_TARGETS_UP, CHARAFE_BREAST_CANCER_BASAL_VS_MESENCHYMAL_DN, GOBP_CARBOHYDRATE_DERIVATIVE_BIOSYNTHETIC_PROCESS, GOBP_NUCLEOSIDE_TRIPHOSPHATE_METABOLIC_PROCESS, TCF11_01, GOBP_PYRIMIDINE_CONTAINING_COMPOUND_METABOLIC_PROCESS
GO Biological Process (8): ADP biosynthetic process (GO:0006172), dADP biosynthetic process (GO:0006173), pyrimidine ribonucleotide biosynthetic process (GO:0009220), ATP metabolic process (GO:0046034), nucleobase-containing compound metabolic process (GO:0006139), nucleotide metabolic process (GO:0009117), nucleoside monophosphate metabolic process (GO:0009123), nucleoside monophosphate phosphorylation (GO:0046940)
GO Molecular Function (8): AMP kinase activity (GO:0004017), nucleoside diphosphate kinase activity (GO:0004550), ATP binding (GO:0005524), nucleotide binding (GO:0000166), kinase activity (GO:0016301), transferase activity (GO:0016740), phosphotransferase activity, phosphate group as acceptor (GO:0016776), nucleobase-containing compound kinase activity (GO:0019205)
GO Cellular Component (3): cytoplasm (GO:0005737), cytosol (GO:0005829), centriolar satellite (GO:0034451)
Reactome top-level categories
Rollup of top-2 pathways:
| Category | Pathways |
|---|---|
| Metabolism of nucleotides | 1 |
| Metabolism | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 3 |
| nucleoside phosphate metabolic process | 2 |
| transferase activity, transferring phosphorus-containing groups | 2 |
| purine ribonucleotide biosynthetic process | 1 |
| purine ribonucleoside diphosphate biosynthetic process | 1 |
| ADP metabolic process | 1 |
| purine deoxyribonucleotide biosynthetic process | 1 |
| purine deoxyribonucleoside diphosphate biosynthetic process | 1 |
| deoxyribonucleoside diphosphate biosynthetic process | 1 |
| dADP metabolic process | 1 |
| pyrimidine nucleotide biosynthetic process | 1 |
| pyrimidine ribonucleotide metabolic process | 1 |
| ribonucleotide biosynthetic process | 1 |
| purine ribonucleotide metabolic process | 1 |
| purine ribonucleoside triphosphate metabolic process | 1 |
| primary metabolic process | 1 |
| nucleoside monophosphate metabolic process | 1 |
| nucleotide biosynthetic process | 1 |
| nucleoside monophosphate kinase activity | 1 |
| phosphotransferase activity, phosphate group as acceptor | 1 |
| nucleobase-containing compound kinase activity | 1 |
| adenyl ribonucleotide binding | 1 |
| purine ribonucleoside triphosphate binding | 1 |
| nucleoside phosphate binding | 1 |
| heterocyclic compound binding | 1 |
| catalytic activity | 1 |
| kinase activity | 1 |
| intracellular anatomical structure | 1 |
| cytoplasm | 1 |
| centrosome | 1 |
Protein interactions and networks
STRING
3371 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| AK5 | AK7 | Q96M32 | 735 |
| AK5 | CPNE6 | O95741 | 622 |
| AK5 | AK2 | P54819 | 567 |
| AK5 | FBXL13 | Q8NEE6 | 560 |
| AK5 | AK6 | Q9Y3D8 | 528 |
| AK5 | IGLON5 | A6NGN9 | 527 |
| AK5 | TRIM46 | Q7Z4K8 | 500 |
| AK5 | DPYSL5 | Q9BPU6 | 490 |
| AK5 | AK3 | Q9UIJ7 | 483 |
| AK5 | BRSK2 | Q8IWQ3 | 465 |
| AK5 | STXBP3 | O00186 | 453 |
| AK5 | AK9 | Q5TCS8 | 431 |
| AK5 | NME3 | Q13232 | 425 |
| AK5 | NME7 | Q9Y5B8 | 419 |
| AK5 | PNMA2 | Q9UL42 | 417 |
IntAct
9 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| AK5 | YWHAZ | psi-mi:“MI:0915”(physical association) | 0.400 |
| PB2 | psi-mi:“MI:0914”(association) | 0.350 | |
| INTS15 | AK5 | psi-mi:“MI:0915”(physical association) | 0.000 |
| AK5 | CPNE6 | psi-mi:“MI:0915”(physical association) | 0.000 |
| NUCKS1 | AK5 | psi-mi:“MI:0915”(physical association) | 0.000 |
| STRN4 | AK5 | psi-mi:“MI:0915”(physical association) | 0.000 |
| TRIM46 | AK5 | psi-mi:“MI:0915”(physical association) | 0.000 |
| UGDH | AK5 | psi-mi:“MI:0915”(physical association) | 0.000 |
| RNF114 | AK5 | psi-mi:“MI:0915”(physical association) | 0.000 |
BioGRID (15): AK5 (Two-hybrid), AK5 (Two-hybrid), AK5 (Two-hybrid), AK5 (Two-hybrid), AK5 (Two-hybrid), AK5 (Two-hybrid), AK5 (Two-hybrid), AK5 (Affinity Capture-RNA), AK5 (Positive Genetic), CMPK1 (Negative Genetic), AK5 (Affinity Capture-MS), AK5 (Protein-peptide), AK5 (Affinity Capture-MS), AK5 (Affinity Capture-MS), AK5 (Affinity Capture-MS)
ESM2 similar proteins: A0A4X1T4U3, A4IFD0, O00329, O14936, O35904, O61069, O65583, O70589, P07953, P16118, P25114, P49872, P70266, Q13057, Q16875, Q16877, Q24210, Q28901, Q298L5, Q2UM43, Q32M07, Q4R3W4, Q4R8B6, Q4V8A1, Q502L7, Q5B5L3, Q5M7G4, Q5R9C1, Q623S8, Q62915, Q68FP8, Q6DGQ8, Q6DTY7, Q6P618, Q80UN9, Q8IMX7, Q8MIR4, Q91309, Q91348, Q91YL3
Diamond homologs: A0ALU7, A0RQ72, A1VYZ9, A2BTB8, A2BYR7, A3PF28, A4J592, A4QBP4, A5GIS6, A5GVX9, A6L0Z9, A6Q322, A6QAE9, A7GXF6, A7H4H3, A7HWT2, A7I057, A7IPP9, A7ZEH4, A8FL60, A8G742, A9BCM8, B0RP52, B1MVZ4, B1VEX6, B2FT48, B2RIY8, B2UTK9, B4SI37, B5E6H6, B5Z6Y9, B8DB29, B9KFZ2, B9L9Y8, C0R000, C1KZF9, C3PL31, C4LL05, G4V9S0, O04905
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
89 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 72 |
| Likely benign | 4 |
| Benign | 4 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
2856 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 1:77282334:G:GT | donor_gain | 1.0000 |
| 1:77293791:A:AG | acceptor_gain | 1.0000 |
| 1:77293792:G:GA | acceptor_gain | 1.0000 |
| 1:77293792:GTAAT:G | acceptor_gain | 1.0000 |
| 1:77293905:G:GT | donor_gain | 1.0000 |
| 1:77293905:GGA:G | donor_gain | 1.0000 |
| 1:77293906:GAG:G | donor_gain | 1.0000 |
| 1:77297829:A:AG | acceptor_gain | 1.0000 |
| 1:77297829:AAAAG:A | acceptor_gain | 1.0000 |
| 1:77297948:G:GG | donor_gain | 1.0000 |
| 1:77313901:GCCT:G | donor_gain | 1.0000 |
| 1:77340565:GACA:G | donor_gain | 1.0000 |
| 1:77340569:G:GG | donor_gain | 1.0000 |
| 1:77410968:T:A | acceptor_gain | 1.0000 |
| 1:77410976:CCCA:C | acceptor_loss | 1.0000 |
| 1:77410979:A:AG | acceptor_gain | 1.0000 |
| 1:77410979:AGTT:A | acceptor_loss | 1.0000 |
| 1:77410979:AGTTT:A | acceptor_gain | 1.0000 |
| 1:77410980:G:GT | acceptor_gain | 1.0000 |
| 1:77410980:GT:G | acceptor_gain | 1.0000 |
| 1:77410980:GTT:G | acceptor_gain | 1.0000 |
| 1:77410980:GTTT:G | acceptor_gain | 1.0000 |
| 1:77410980:GTTTG:G | acceptor_gain | 1.0000 |
| 1:77411068:GCAG:G | donor_gain | 1.0000 |
| 1:77411069:CAGGT:C | donor_loss | 1.0000 |
| 1:77411070:AGG:A | donor_loss | 1.0000 |
| 1:77411072:G:GG | donor_gain | 1.0000 |
| 1:77411073:T:A | donor_loss | 1.0000 |
| 1:77417637:A:AG | acceptor_gain | 1.0000 |
| 1:77417638:G:GG | acceptor_gain | 1.0000 |
AlphaMissense
3710 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 1:77297643:T:C | L167S | 1.000 |
| 1:77297681:T:A | W180R | 1.000 |
| 1:77297681:T:C | W180R | 1.000 |
| 1:77297683:G:C | W180C | 1.000 |
| 1:77297683:G:T | W180C | 1.000 |
| 1:77297711:G:A | G190R | 1.000 |
| 1:77297711:G:C | G190R | 1.000 |
| 1:77297712:G:A | G190E | 1.000 |
| 1:77297712:G:T | G190V | 1.000 |
| 1:77297721:C:A | A193D | 1.000 |
| 1:77297895:T:A | V216D | 1.000 |
| 1:77297904:G:A | G219E | 1.000 |
| 1:77297910:C:A | P221Q | 1.000 |
| 1:77286945:T:C | L22P | 0.999 |
| 1:77286957:T:C | L26P | 0.999 |
| 1:77293867:A:C | S108R | 0.999 |
| 1:77293869:T:A | S108R | 0.999 |
| 1:77293869:T:G | S108R | 0.999 |
| 1:77293960:G:C | G139R | 0.999 |
| 1:77297559:G:A | G139D | 0.999 |
| 1:77297562:G:A | G140D | 0.999 |
| 1:77297568:G:A | G142E | 0.999 |
| 1:77297570:A:C | S143R | 0.999 |
| 1:77297572:T:A | S143R | 0.999 |
| 1:77297572:T:G | S143R | 0.999 |
| 1:77297574:G:A | G144E | 0.999 |
| 1:77297576:A:C | K145Q | 0.999 |
| 1:77297578:G:C | K145N | 0.999 |
| 1:77297578:G:T | K145N | 0.999 |
| 1:77297633:G:A | G164R | 0.999 |
dbSNP variants (sampled 300 via entrez): RS1000008430 (1:77551192 C>G), RS1000012205 (1:77434254 G>C), RS1000026381 (1:77538912 A>G), RS1000034177 (1:77457573 C>T), RS1000036472 (1:77298575 G>A), RS1000043197 (1:77520681 A>T), RS1000061477 (1:77372284 T>G), RS1000081071 (1:77479798 G>A), RS1000084876 (1:77426883 C>G,T), RS1000100137 (1:77507912 T>A), RS1000121255 (1:77323200 C>G,T), RS1000138164 (1:77421219 T>A,C), RS1000152852 (1:77384853 G>A), RS1000153747 (1:77322921 T>C), RS1000163054 (1:77281933 G>A,C,T)
Disease associations
OMIM: gene MIM:608009 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
23 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST002783_151 | Body mass index | 7.000000e-06 |
| GCST002783_204 | Body mass index | 7.000000e-06 |
| GCST003429_14 | Morning vs. evening chronotype | 8.000000e-12 |
| GCST003453_4 | Chronotype | 2.000000e-12 |
| GCST003454_3 | Morning vs. evening chronotype | 2.000000e-09 |
| GCST003837_2 | Chronotype | 2.000000e-21 |
| GCST003838_2 | Morning vs. evening chronotype | 1.000000e-12 |
| GCST003982_2 | Sleep traits (multi-trait analysis) | 1.000000e-09 |
| GCST004125_10 | Type 2 diabetes (age of onset) | 8.000000e-06 |
| GCST004600_61 | Eosinophil percentage of white cells | 4.000000e-09 |
| GCST004744_76 | Lung adenocarcinoma | 3.000000e-10 |
| GCST004748_63 | Lung cancer | 3.000000e-11 |
| GCST004749_58 | Lung cancer in ever smokers | 2.000000e-08 |
| GCST006586_44 | Urinary albumin excretion | 2.000000e-08 |
| GCST007565_94 | Morning person | 4.000000e-40 |
| GCST007565_98 | Morning person | 5.000000e-45 |
| GCST007576_297 | Chronotype | 5.000000e-45 |
| GCST008058_32 | Estimated glomerular filtration rate | 6.000000e-11 |
| GCST009524_136 | Household income (MTAG) | 5.000000e-08 |
| GCST009640_4 | Urinary albumin-to-creatinine ratio | 3.000000e-08 |
| GCST90002386_367 | High light scatter reticulocyte percentage of red cells | 1.000000e-12 |
| GCST90002387_227 | Immature fraction of reticulocytes | 1.000000e-09 |
| GCST90002396_136 | Mean reticulocyte volume | 5.000000e-10 |
EFO canonical traits (9, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004340 | body mass index |
| EFO:0007875 | excessive daytime sleepiness measurement |
| EFO:0007876 | insomnia measurement |
| EFO:0007991 | eosinophil percentage of leukocytes |
| EFO:0004285 | albuminuria |
| EFO:0008328 | chronotype measurement |
| EFO:0009695 | household income |
| EFO:0007778 | urinary albumin to creatinine ratio |
| EFO:0010701 | mean reticulocyte volume |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
46 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| (+)-JQ1 compound | decreases expression | 2 |
| Benzo(a)pyrene | decreases expression, increases methylation | 2 |
| Phenylmercuric Acetate | decreases expression, affects cotreatment | 2 |
| methylmercuric chloride | decreases expression | 1 |
| bisphenol A | affects cotreatment, increases methylation | 1 |
| terbufos | increases methylation | 1 |
| trichostatin A | decreases expression | 1 |
| mono-(2-ethylhexyl)phthalate | increases expression | 1 |
| afimoxifene | decreases response to substance | 1 |
| potassium chromate(VI) | increases expression | 1 |
| S-(1,2-dichlorovinyl)cysteine | affects cotreatment, decreases expression | 1 |
| perfluorooctane sulfonic acid | increases expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| 2-palmitoylglycerol | increases expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, decreases expression | 1 |
| 2,2’,4,4’,5-brominated diphenyl ether | increases expression | 1 |
| abrine | decreases expression | 1 |
| dorsomorphin | affects cotreatment, decreases expression | 1 |
| jinfukang | increases expression | 1 |
| NSC 689534 | affects binding, decreases expression | 1 |
| 3-(2-hydroxy-4-(2-methylnonan-2-yl)phenyl)cyclohexan-1-ol | increases expression | 1 |
| Dasatinib | decreases expression | 1 |
| Zoledronic Acid | decreases expression | 1 |
| Fulvestrant | affects cotreatment, increases methylation | 1 |
| Azacitidine | increases expression | 1 |
| Calcitriol | decreases expression | 1 |
| Copper | affects binding, decreases expression | 1 |
| Bucladesine | affects cotreatment, increases expression | 1 |
| Diethylhexyl Phthalate | decreases expression | 1 |
| Fonofos | increases methylation | 1 |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.