AK7
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Also known as FLJ32864FAP75CFAP75
Summary
AK7 (adenylate kinase 7, HGNC:20091) is a protein-coding gene on chromosome 14q32.2, encoding Adenylate kinase 7 (Q96M32). Nucleoside monophosphate (NMP) kinase that catalyzes the reversible transfer of the terminal phosphate group between nucleoside triphosphates and monophosphates.
This gene encodes a member of the adenylate kinase family of enzymes. The encoded enzyme is a phosphotransferase that catalyzes the reversible phosphorylation of adenine nucleotides. This enzyme plays a role in energy homeostasis of the cell. Alternative splicing results in multiple transcript variants. Mutations in the mouse gene are associated with primary ciliary dyskinesia.
Source: NCBI Gene 122481 — RefSeq curated summary.
At a glance
- Gene–disease (curated): non-syndromic male infertility due to sperm motility disorder (Supportive, GenCC) — +3 more curated relationships
- GWAS associations: 4
- Clinical variants (ClinVar): 468 total — 3 pathogenic, 2 likely-pathogenic
- Phenotypes (HPO): 8
- MANE Select transcript:
NM_152327
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:20091 |
| Approved symbol | AK7 |
| Name | adenylate kinase 7 |
| Location | 14q32.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | FLJ32864, FAP75, CFAP75 |
| Ensembl gene | ENSG00000140057 |
| Ensembl biotype | protein_coding |
| OMIM | 615364 |
| Entrez | 122481 |
Gene structure
Transcript identifiers
Ensembl transcripts: 13 — 11 protein_coding, 1 protein_coding_CDS_not_defined, 1 retained_intron
ENST00000267584, ENST00000554313, ENST00000554706, ENST00000555570, ENST00000556643, ENST00000856701, ENST00000856702, ENST00000856703, ENST00000856704, ENST00000856705, ENST00000856706, ENST00000856707, ENST00000856708
RefSeq mRNA: 5 — MANE Select: NM_152327
NM_001350888, NM_001350890, NM_001350891, NM_001350892, NM_152327
CCDS: CCDS9945
Canonical transcript exons
ENST00000267584 — 18 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000870327 | 96478465 | 96478662 |
| ENSE00000870328 | 96482999 | 96483219 |
| ENSE00000941210 | 96442730 | 96442818 |
| ENSE00000941211 | 96446517 | 96446607 |
| ENSE00000941212 | 96451421 | 96451570 |
| ENSE00000941213 | 96456347 | 96456475 |
| ENSE00001011323 | 96472687 | 96472755 |
| ENSE00001093865 | 96471478 | 96471606 |
| ENSE00001093874 | 96437835 | 96437915 |
| ENSE00001093877 | 96449802 | 96449879 |
| ENSE00001175774 | 96392128 | 96392259 |
| ENSE00001269055 | 96486898 | 96487056 |
| ENSE00001310452 | 96458083 | 96458212 |
| ENSE00001365345 | 96488305 | 96489427 |
| ENSE00003500787 | 96398075 | 96398263 |
| ENSE00003608146 | 96420822 | 96420932 |
| ENSE00003622571 | 96408847 | 96408941 |
| ENSE00003635028 | 96404757 | 96404865 |
Expression profiles
Bgee: expression breadth ubiquitous, 168 present calls, max score 95.75.
FANTOM5 (CAGE): breadth broad, TPM avg 2.0714 / max 58.5584, expressed in 787 samples.
FANTOM5 promoters (3 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 141340 | 1.6858 | 695 |
| 141339 | 0.3766 | 201 |
| 141343 | 0.0090 | 5 |
Top tissues by expression
248 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| bronchial epithelial cell | CL:0002328 | 95.75 | gold quality |
| bronchus | UBERON:0002185 | 94.25 | gold quality |
| right uterine tube | UBERON:0001302 | 92.13 | gold quality |
| olfactory segment of nasal mucosa | UBERON:0005386 | 91.31 | gold quality |
| epithelium of nasopharynx | UBERON:0001951 | 86.46 | gold quality |
| mucosa of paranasal sinus | UBERON:0005030 | 86.03 | gold quality |
| caput epididymis | UBERON:0004358 | 85.06 | gold quality |
| pancreatic ductal cell | CL:0002079 | 83.04 | silver quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 81.72 | gold quality |
| islet of Langerhans | UBERON:0000006 | 80.22 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 77.17 | gold quality |
| fallopian tube | UBERON:0003889 | 76.75 | gold quality |
| oviduct epithelium | UBERON:0004804 | 75.74 | gold quality |
| buccal mucosa cell | CL:0002336 | 74.25 | silver quality |
| skin of leg | UBERON:0001511 | 73.61 | gold quality |
| skin of abdomen | UBERON:0001416 | 72.95 | gold quality |
| nasal cavity mucosa | UBERON:0001826 | 72.92 | gold quality |
| adenohypophysis | UBERON:0002196 | 72.79 | gold quality |
| pituitary gland | UBERON:0000007 | 72.78 | gold quality |
| zone of skin | UBERON:0000014 | 72.02 | gold quality |
| ventricular zone | UBERON:0003053 | 71.31 | gold quality |
| hypothalamus | UBERON:0001898 | 71.22 | gold quality |
| right testis | UBERON:0004534 | 71.17 | gold quality |
| left testis | UBERON:0004533 | 70.70 | gold quality |
| testis | UBERON:0000473 | 70.58 | gold quality |
| right adrenal gland | UBERON:0001233 | 70.11 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 69.95 | gold quality |
| gall bladder | UBERON:0002110 | 69.48 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 69.34 | gold quality |
| pancreas | UBERON:0001264 | 68.93 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 9.00 |
Regulation
Is transcription factor: no
Literature-anchored findings (GeneRIF, showing 6)
- expression is decreased in patients with primary ciliary dyskinesia and is correlated with ciliary beat frequency of nasal epithelium cellsepithelium (PMID:20537283)
- Both AK7 and full-length AK8 showed highest affinity for AMP with ATP as the phosphate donor, and proved to be more efficient in AMP phosphorylation as compared with the major cytosolic isoform AK1 (PMID:21080915)
- AK7 may be involved in the development of Primary ciliary dyskinesia (PCD). (PMID:22801010)
- a novel genetic cause of asthenozoospermia due to MMAF and suggests that in humans, more deleterious mutations of AK7 might induce primary ciliary dyskinesia. (PMID:29365104)
- The mRNA and protein expressions of AK1, AK6 and AK7 are significantly down-regulated in the sperm of asthenospermia patients, which may be closely related with reduced sperm motility. (PMID:32251557)
- A novel homozygous nonsense variant of AK7 is associated with multiple morphological abnormalities of the sperm flagella. (PMID:38492416)
Cross-species orthologs
6 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | ak7b | ENSDARG00000017023 |
| danio_rerio | ak7a | ENSDARG00000019001 |
| mus_musculus | Ak7 | ENSMUSG00000041323 |
| rattus_norvegicus | Ak7 | ENSRNOG00000055714 |
| drosophila_melanogaster | CG9541 | FBGN0032083 |
| caenorhabditis_elegans | WBGENE00008746 |
Paralogs (9): AK2 (ENSG00000004455), AK1 (ENSG00000106992), AK3 (ENSG00000147853), AK5 (ENSG00000154027), AK9 (ENSG00000155085), CMPK1 (ENSG00000162368), AK4 (ENSG00000162433), AK8 (ENSG00000165695), AK4P3 (ENSG00000233381)
Protein
Protein identifiers
Adenylate kinase 7 — Q96M32 (reviewed: Q96M32)
Alternative names: ATP-AMP transphosphorylase 7
All UniProt accessions (3): Q96M32, G3V365, H0YIY5
UniProt curated annotations — full annotation on UniProt →
Function. Nucleoside monophosphate (NMP) kinase that catalyzes the reversible transfer of the terminal phosphate group between nucleoside triphosphates and monophosphates. Has highest activity toward AMP, and weaker activity toward dAMP, CMP and dCMP. Also displays broad nucleoside diphosphate kinase activity. Involved in maintaining ciliary structure and function.
Subcellular location. Cytoplasm. Cytosol. Cell projection. Cilium. Flagellum.
Tissue specificity. Expressed in sperm and airway epithelial cells (at protein level).
Disease relevance. Spermatogenic failure 27 (SPGF27) [MIM:617965] An autosomal recessive infertility disorder caused by spermatogenesis defects that result in multiple morphologic abnormalities of the sperm flagella, including short, irregular, coiled, or absent flagella. The disease is caused by variants affecting the gene represented in this entry.
Similarity. In the central section; belongs to the adenylate kinase family. In the C-terminal section; belongs to the dpy-30 family.
RefSeq proteins (5): NP_001337817, NP_001337819, NP_001337820, NP_001337821, NP_689540* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000850 | Adenylat/UMP-CMP_kin | Family |
| IPR007858 | Dpy-30_motif | Conserved_site |
| IPR027417 | P-loop_NTPase | Homologous_superfamily |
| IPR036291 | NAD(P)-bd_dom_sf | Homologous_superfamily |
| IPR047499 | DD_AK7 | Domain |
Pfam: PF00406, PF05186
Enzyme classification (BRENDA):
- EC 2.7.4.3 — adenylate kinase (BRENDA: 73 organisms, 259 substrates, 134 inhibitors, 192 Km, 47 kcat entries)
Substrate kinetics (BRENDA)
9 substrates with measured Km, best-characterized 9. Km ranges are aggregated across organisms/conditions.
| Substrate | Km (mM) | Measurements |
|---|---|---|
| AMP | 0.0014–1.9 | 59 |
| ATP | 0.0001–7 | 58 |
| ADP | 0.003–16.8 | 27 |
| 2 ADP | 0.006–0.15 | 5 |
| DAMP | 0.507–2 | 2 |
| 2’-DAMP | 0.85 | 1 |
| 7-DEAZAADENOSINE 5’-MONOPHOSPHATE | 0.73 | 1 |
| ADP3- | 0.03 | 1 |
| CMP | 0.0002 | 1 |
Catalyzed reactions (Rhea), 3 shown:
- AMP + ATP = 2 ADP (RHEA:12973)
- a ribonucleoside 5’-diphosphate + ATP = a ribonucleoside 5’-triphosphate + ADP (RHEA:18113)
- a 2’-deoxyribonucleoside 5’-diphosphate + ATP = a 2’-deoxyribonucleoside 5’-triphosphate + ADP (RHEA:44640)
UniProt features (18 total): binding site 6, region of interest 4, sequence variant 3, sequence conflict 2, coiled-coil region 2, chain 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q96M32-F1 | 82.35 | 0.37 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Ligand- & substrate-binding residues (6): 489; 555; 587; 377–382; 432–455; 482–485
Function
Pathways and Gene Ontology
Reactome pathways
3 pathways
| ID | Pathway |
|---|---|
| R-HSA-499943 | Interconversion of nucleotide di- and triphosphates |
| R-HSA-1430728 | Metabolism |
| R-HSA-15869 | Metabolism of nucleotides |
MSigDB gene sets: 133 (showing top):
BHATI_G2M_ARREST_BY_2METHOXYESTRADIOL_DN, GOBP_ORGANOPHOSPHATE_METABOLIC_PROCESS, GOBP_NUCLEOSIDE_PHOSPHATE_BIOSYNTHETIC_PROCESS, GOBP_ORGANOPHOSPHATE_BIOSYNTHETIC_PROCESS, GOBP_NUCLEOBASE_CONTAINING_SMALL_MOLECULE_METABOLIC_PROCESS, SENGUPTA_NASOPHARYNGEAL_CARCINOMA_DN, KEGG_PURINE_METABOLISM, GOBP_NUCLEOSIDE_MONOPHOSPHATE_METABOLIC_PROCESS, GOBP_CELL_PROJECTION_ORGANIZATION, chr14q32, GOCC_MOTILE_CILIUM, GOCC_SPERM_PRINCIPAL_PIECE, GOCC_CILIUM, BOYLAN_MULTIPLE_MYELOMA_C_CLUSTER_DN, GOMF_NUCLEOSIDE_DIPHOSPHATE_KINASE_ACTIVITY
GO Biological Process (5): cell projection organization (GO:0030030), nucleobase-containing compound metabolic process (GO:0006139), nucleotide metabolic process (GO:0009117), nucleoside monophosphate metabolic process (GO:0009123), nucleoside monophosphate phosphorylation (GO:0046940)
GO Molecular Function (9): AMP kinase activity (GO:0004017), nucleoside diphosphate kinase activity (GO:0004550), ATP binding (GO:0005524), dCMP kinase activity (GO:0036431), nucleotide binding (GO:0000166), kinase activity (GO:0016301), transferase activity (GO:0016740), phosphotransferase activity, phosphate group as acceptor (GO:0016776), nucleobase-containing compound kinase activity (GO:0019205)
GO Cellular Component (6): cytoplasm (GO:0005737), cytosol (GO:0005829), sperm principal piece (GO:0097228), cilium (GO:0005929), motile cilium (GO:0031514), cell projection (GO:0042995)
Reactome top-level categories
Rollup of top-2 pathways:
| Category | Pathways |
|---|---|
| Metabolism of nucleotides | 1 |
| Metabolism | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 4 |
| nucleoside phosphate metabolic process | 2 |
| transferase activity, transferring phosphorus-containing groups | 2 |
| cellular component organization | 1 |
| primary metabolic process | 1 |
| nucleoside monophosphate metabolic process | 1 |
| nucleotide biosynthetic process | 1 |
| nucleoside monophosphate kinase activity | 1 |
| phosphotransferase activity, phosphate group as acceptor | 1 |
| nucleobase-containing compound kinase activity | 1 |
| adenyl ribonucleotide binding | 1 |
| purine ribonucleoside triphosphate binding | 1 |
| deoxynucleoside phosphate kinase activity, ATP as phosphate donor | 1 |
| nucleoside phosphate binding | 1 |
| heterocyclic compound binding | 1 |
| catalytic activity | 1 |
| kinase activity | 1 |
| intracellular anatomical structure | 1 |
| cytoplasm | 1 |
| sperm flagellum | 1 |
| intraciliary transport particle | 1 |
| membrane-bounded organelle | 1 |
| plasma membrane bounded cell projection | 1 |
| cilium | 1 |
Protein interactions and networks
STRING
3039 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| AK7 | AK8 | Q96MA6 | 812 |
| AK7 | AK1 | P00568 | 750 |
| AK7 | AK5 | Q9Y6K8 | 735 |
| AK7 | AK3 | Q9UIJ7 | 692 |
| AK7 | AK4 | P27144 | 664 |
| AK7 | SIRT2 | Q8IXJ6 | 602 |
| AK7 | CFAP69 | A5D8W1 | 583 |
| AK7 | DNAH6 | Q9C0G6 | 574 |
| AK7 | DNAH17 | Q9UFH2 | 574 |
| AK7 | DPCD | Q9BVM2 | 568 |
| AK7 | CFAP43 | Q8NDM7 | 556 |
| AK7 | ARMC2 | Q8NEN0 | 554 |
| AK7 | CEP135 | Q66GS9 | 543 |
| AK7 | TTC29 | Q8NA56 | 543 |
| AK7 | QRICH2 | Q9H0J4 | 538 |
IntAct
3 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| ASH2L | KMT2D | psi-mi:“MI:0914”(association) | 0.890 |
| AK7 | ZC3H14 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (12): TNPO3 (Affinity Capture-MS), GPKOW (Affinity Capture-MS), MUC13 (Affinity Capture-MS), ZC3H14 (Affinity Capture-MS), AK7 (Affinity Capture-MS), AK7 (Affinity Capture-MS), AK7 (Affinity Capture-MS), AK7 (Affinity Capture-RNA), AK7 (Proximity Label-MS), AK7 (Proximity Label-MS), AK7 (Proximity Label-MS), AK7 (Proximity Label-MS)
ESM2 similar proteins: A3KMX7, A5PKL6, F1MKX4, F1R2X6, F4IVI0, O94952, P35574, P42700, P51398, P97259, Q08834, Q09328, Q14997, Q2TBQ7, Q2TBU5, Q3U1V6, Q3V3E1, Q498D5, Q4R6Y8, Q5F204, Q5I0G3, Q5IH13, Q5IH14, Q5R5S1, Q5R7E8, Q5RL51, Q5SSW2, Q6IQC7, Q6NRP2, Q6NTT6, Q6P2P2, Q6YXW6, Q8BGG7, Q8C5P5, Q8CEL2, Q8N1I0, Q8NEC7, Q8NHU2, Q8R4G6, Q8TB36
Diamond homologs: O74861, Q10661, Q2NKU6, Q8K3E7, Q95JP6, Q96M32, Q99LT0, Q9C005, Q9D2H2, Q9VKQ9, P56597, Q99MH5, B0TC77, B2A4G2, B3QS41, Q6DGQ8, Q6FD71, Q73NP0, Q8XHU4, C5CGI1, O29581, Q0SQG5, Q0TMR7, B1I3R5
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
468 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 3 |
| Likely pathogenic | 2 |
| Uncertain significance | 237 |
| Likely benign | 177 |
| Benign | 27 |
Top pathogenic / likely-pathogenic (5)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1340262 | GRCh37/hg19 14q32.13-32.31(chr14:95871795-102457523)x1 | Pathogenic |
| 3391923 | GRCh37/hg19 14q31.1-32.2(chr14:79886061-96870809)x1 | Pathogenic |
| 564136 | GRCh37/hg19 14q31.2-32.2(chr14:84783137-96908198)x1 | Pathogenic |
| 1807735 | GRCh37/hg19 14q31.1-32.2(chr14:81593708-97059276)x3 | Likely pathogenic |
| 4845715 | NM_152327.5(AK7):c.690+1G>T | Likely pathogenic |
SpliceAI
3737 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 14:96392257:A:T | donor_gain | 1.0000 |
| 14:96392257:AAGG:A | donor_loss | 1.0000 |
| 14:96392258:AGG:A | donor_loss | 1.0000 |
| 14:96392259:GGTGA:G | donor_loss | 1.0000 |
| 14:96392260:GTG:G | donor_loss | 1.0000 |
| 14:96392261:T:A | donor_loss | 1.0000 |
| 14:96398264:G:GG | donor_gain | 1.0000 |
| 14:96404844:G:GT | donor_gain | 1.0000 |
| 14:96404869:A:AG | donor_gain | 1.0000 |
| 14:96404870:G:GG | donor_gain | 1.0000 |
| 14:96408845:A:AG | acceptor_gain | 1.0000 |
| 14:96408846:G:GG | acceptor_gain | 1.0000 |
| 14:96408942:G:GG | donor_gain | 1.0000 |
| 14:96420815:A:AG | acceptor_gain | 1.0000 |
| 14:96420816:T:G | acceptor_gain | 1.0000 |
| 14:96420817:A:AG | acceptor_gain | 1.0000 |
| 14:96420817:AATAG:A | acceptor_gain | 1.0000 |
| 14:96420818:A:G | acceptor_gain | 1.0000 |
| 14:96420820:AGG:A | acceptor_loss | 1.0000 |
| 14:96420820:AGGAG:A | acceptor_gain | 1.0000 |
| 14:96420821:G:A | acceptor_loss | 1.0000 |
| 14:96420821:GGA:G | acceptor_gain | 1.0000 |
| 14:96420821:GGAGG:G | acceptor_gain | 1.0000 |
| 14:96420929:AAAG:A | donor_gain | 1.0000 |
| 14:96420929:AAAGG:A | donor_loss | 1.0000 |
| 14:96420930:AAGG:A | donor_loss | 1.0000 |
| 14:96420931:AG:A | donor_gain | 1.0000 |
| 14:96420931:AGGTA:A | donor_loss | 1.0000 |
| 14:96420932:GG:G | donor_gain | 1.0000 |
| 14:96420933:G:GA | donor_loss | 1.0000 |
AlphaMissense
4799 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 14:96420866:A:C | R181S | 0.998 |
| 14:96420866:A:T | R181S | 0.998 |
| 14:96420865:G:C | R181T | 0.997 |
| 14:96442812:T:C | L258P | 0.995 |
| 14:96437860:T:A | V212D | 0.994 |
| 14:96446567:C:A | A277D | 0.994 |
| 14:96408915:T:A | W158R | 0.992 |
| 14:96408915:T:C | W158R | 0.992 |
| 14:96451496:T:A | W342R | 0.992 |
| 14:96451496:T:C | W342R | 0.992 |
| 14:96471549:G:C | G477R | 0.992 |
| 14:96408901:C:G | S153W | 0.991 |
| 14:96471588:G:C | A490P | 0.991 |
| 14:96398079:T:C | L37P | 0.990 |
| 14:96420904:A:T | E194V | 0.990 |
| 14:96437869:G:A | G215E | 0.990 |
| 14:96442736:T:A | W233R | 0.990 |
| 14:96442736:T:C | W233R | 0.990 |
| 14:96471550:G:A | G477D | 0.990 |
| 14:96398208:G:A | G80D | 0.989 |
| 14:96420865:G:T | R181I | 0.989 |
| 14:96420905:A:C | E194D | 0.989 |
| 14:96420905:A:T | E194D | 0.989 |
| 14:96486998:T:C | L692P | 0.989 |
| 14:96398207:G:C | G80R | 0.988 |
| 14:96408889:T:C | F149S | 0.988 |
| 14:96488305:G:C | A712P | 0.988 |
| 14:96392216:T:C | F21S | 0.987 |
| 14:96404788:T:C | L109P | 0.987 |
| 14:96404796:T:C | C112R | 0.987 |
dbSNP variants (sampled 300 via entrez): RS1000022206 (14:96394567 A>C), RS1000030455 (14:96394285 A>G), RS1000058204 (14:96454341 G>A), RS1000063346 (14:96425147 T>C), RS1000099411 (14:96436676 T>C), RS1000103121 (14:96477778 T>C), RS1000130851 (14:96418964 C>T), RS1000136476 (14:96394813 T>G), RS1000162463 (14:96420889 A>G), RS1000163396 (14:96483386 A>G), RS1000235104 (14:96462007 C>A,T), RS1000243310 (14:96400271 C>A), RS1000252326 (14:96455486 A>G), RS1000262403 (14:96466335 C>A), RS1000279011 (14:96460157 A>G)
Disease associations
OMIM: gene MIM:615364 | disease phenotypes: MIM:617965, MIM:244400
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| non-syndromic male infertility due to sperm motility disorder | Supportive | Autosomal recessive |
| primary ciliary dyskinesia | Limited | Autosomal recessive |
| spermatogenic failure 27 | Limited | Autosomal recessive |
ClinGen Gene-Disease Validity (2)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| spermatogenic failure | Limited | AR |
| primary ciliary dyskinesia | Disputed | AR |
Mondo (3): spermatogenic failure 27 (MONDO:0054731), primary ciliary dyskinesia (MONDO:0016575), (MONDO:0017173)
Orphanet (1): Primary ciliary dyskinesia (Orphanet:244)
HPO phenotypes
8 total (8 of 8 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000007 | Autosomal recessive inheritance |
| HP:0003251 | Male infertility |
| HP:0011462 | Young adult onset |
| HP:0012207 | Reduced sperm motility |
| HP:0032558 | Absent sperm flagella |
| HP:0032559 | Short sperm flagella |
| HP:0032560 | Coiled sperm flagella |
| HP:0033525 | Absent sperm axoneme central pair complex |
GWAS associations
4 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST008157_51 | Body fat mass | 2.000000e-06 |
| GCST009391_748 | Metabolite levels | 8.000000e-07 |
| GCST010796_5098 | Electrocardiogram morphology (amplitude at temporal datapoints) | 4.000000e-08 |
| GCST90006998_10 | Gut microbiota relative abundance (Dorea) | 7.000000e-06 |
EFO canonical traits (3, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0010390 | sphingomyelin 14:0 measurement |
| EFO:0004327 | electrocardiography |
| EFO:0007874 | gut microbiome measurement |
MeSH disease descriptors (2)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D002925 | Ciliary Motility Disorders | C08.200; C09.150; C16.131.077.245.500; C16.320.184.500 |
| D007619 | Kartagener Syndrome | C08.127.384.500; C08.200.531; C08.695.501; C09.150.531; C14.240.400.280.500; C14.280.400.280.500; C16.131.077.245.500.531; C16.131.240.400.280.500; C16.131.740.501; C16.131.810.250.500; C16.320.184.500.531; C16.320.480 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
23 total (human), top 23 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects expression, increases expression | 3 |
| Air Pollutants | increases abundance, increases expression, decreases expression | 2 |
| Phenylmercuric Acetate | affects cotreatment, decreases expression | 2 |
| Smoke | decreases expression, increases abundance, increases expression | 2 |
| aristolochic acid I | decreases expression | 1 |
| bisphenol A | decreases expression | 1 |
| deoxynivalenol | decreases expression | 1 |
| trichostatin A | increases expression | 1 |
| beta-lapachone | decreases expression | 1 |
| S-(1,2-dichlorovinyl)cysteine | affects response to substance, increases expression | 1 |
| 2-palmitoylglycerol | increases expression | 1 |
| entinostat | increases expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, decreases expression | 1 |
| belinostat | increases expression | 1 |
| abrine | decreases expression | 1 |
| dorsomorphin | affects cotreatment, decreases expression | 1 |
| Vorinostat | increases expression | 1 |
| Benzo(a)pyrene | decreases expression | 1 |
| Lipopolysaccharides | affects response to substance, increases expression | 1 |
| Silicon Dioxide | decreases expression | 1 |
| Tobacco Smoke Pollution | decreases expression | 1 |
| Okadaic Acid | decreases expression | 1 |
| Particulate Matter | increases expression | 1 |
Cellosaurus cell lines
1 cell lines: 1 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_A9N7 | GIST-R5 | Cancer cell line |
Clinical trials (associated diseases)
71 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT02871778 | PHASE2 | COMPLETED | Clearing Lungs With ENaC Inhibition in Primary Ciliary Dyskinesia |
| NCT07318974 | PHASE2 | ACTIVE_NOT_RECRUITING | Melatonin Therapy for Improving ICSI Outcomes in Women With Diminished Ovarian Reserve |
| NCT05737485 | PHASE1 | COMPLETED | Study Evaluating the Safety and Tolerability of RCT1100 in Healthy and PCD Subjects |
| NCT06600425 | PHASE1 | COMPLETED | A Study to Assess the Safety, Tolerability, Ciliary Rescue, and Pharmacodynamics of RCT1100 in Adults With PCD |
| NCT06633757 | PHASE1 | COMPLETED | Study of Inhaled RCT1100 in Adults With PCD Caused by Pathogenic Mutations in the DNAI1 Gene to Measure Mucociliary Clearance |
| NCT04901715 | EARLY_PHASE1 | COMPLETED | Functional Studies of Novel Genes Mutated in Primary Ciliary Dyskinesia II: Genotype to Phenotype |
| NCT00005650 | Not specified | COMPLETED | Genetic Study of Patients With Primary Ciliary Dyskinesia |
| NCT00323167 | Not specified | COMPLETED | Rare Genetic Disorders of the Breathing Airways |
| NCT00368446 | Not specified | COMPLETED | Genetic Disorders of Mucociliary Clearance in Nontuberculous Mycobacterial Lung Disease |
| NCT00450918 | Not specified | COMPLETED | Evaluating Progression of and Diagnostic Tools for Primary Ciliary Dyskinesia in Children and Adolescents |
| NCT00608556 | Not specified | COMPLETED | Dyskinesia, Heterotaxy and Congenital Heart Disease |
| NCT00686309 | Not specified | UNKNOWN | Comparison of On-line and Off-line Measurements of Exhaled Nitric Oxide (NO) |
| NCT00722878 | Not specified | COMPLETED | Long-term Lung Function and Disease Progression in Children With Early Onset Primary Ciliary Dyskinesia Lung Disease |
| NCT00739817 | Not specified | UNKNOWN | Screening for Primary Ciliary Dyskinesia Using Nasal Nitric Oxide |
| NCT00783887 | Not specified | COMPLETED | Diagnosis of Primary Ciliary Dyskinesia |
| NCT00807482 | Not specified | RECRUITING | Pathogenesis of Primary Ciliary Dyskinesia (PCD) Lung Disease |
| NCT01070914 | Not specified | UNKNOWN | Early Detection and Characterization of Primary Ciliary Dyskinesia |
| NCT01155115 | Not specified | COMPLETED | Inflammatory and Microbiologic Markers in Sputum: Comparing Cystic Fibrosis With Primary Ciliary Dyskinesia |
| NCT01246258 | Not specified | COMPLETED | Otolith Function in Patients With Primary Ciliary Dyskinesia |
| NCT01929356 | Not specified | RECRUITING | Chest Physiotherapy and Lung Function in Primary Ciliary Dyskinesia |
| NCT02389049 | Not specified | COMPLETED | Genetics of Primary Ciliary Dyskinesia |
| NCT02419365 | Not specified | RECRUITING | International Primary Ciliary Dyskinesia (PCD) Registry |
| NCT02699177 | Not specified | UNKNOWN | In Vivo Measurements of Nasal Ciliary Beat Frequency by Using Interferometry |
| NCT02704455 | Not specified | NOT_YET_RECRUITING | Registry Study on Primary Ciliary Dyskinesia in Chinese Children |
| NCT03271840 | Not specified | COMPLETED | Registry for Primary Ciliary Dyskinesia |
| NCT03279965 | Not specified | UNKNOWN | MRI in Cystic Fibrosis and Primary Ciliary Dyskinesia |
| NCT03320382 | Not specified | UNKNOWN | Multiple Breath Washout, a Clinimetric Dataset |
| NCT03370029 | Not specified | COMPLETED | Respiratory Muscle Strength, Exercise Capacity and Physical Activity Levels in Children Primary Ciliary Dyskinesia |
| NCT03494894 | Not specified | COMPLETED | Bacteriological Link Between Upper and Lower Airways in Cystic Fibrosis and Primary Ciliary Dyskinesia |
| NCT03517865 | Not specified | ACTIVE_NOT_RECRUITING | International Primary Ciliary Dyskinesia Cohort |
| NCT03606200 | Not specified | RECRUITING | Swiss Primary Ciliary Dyskinesia Registry |
| NCT03704207 | Not specified | RECRUITING | Utility of PCD Diagnostics to Improve Clinical Care |
| NCT03704896 | Not specified | UNKNOWN | PRospective Observational Multicentre Study on VAriability of Lung Function in Stable PCD Patients |
| NCT03801395 | Not specified | COMPLETED | PCD New Gene Discovery |
| NCT03809091 | Not specified | UNKNOWN | WGS of Korean Idiopathic Bronchiectasis |
| NCT03832491 | Not specified | COMPLETED | Effect of Game Based Approach on Oxygenation, Functional Capacity and Quality of Life in Primary Ciliary Dyskinesia |
| NCT04161313 | Not specified | COMPLETED | Respiratory Function, Exercise Capacity and Peripheral Muscle Strength Among Patients With CF, PCD and Healthy Children |
| NCT04476433 | Not specified | COMPLETED | Intervention in Chronic Pediatric Patients and Their Families. |
| NCT04489472 | Not specified | UNKNOWN | The Effect of a Dietary Supplement Rich in Nitric Oxide in Patients Diagnosed With Primary Ciliary Dyskinesia. |
| NCT04602481 | Not specified | RECRUITING | Living With Primary Ciliary Dyskinesia (Living With PCD) |
Related Atlas pages
- Associated diseases: primary ciliary dyskinesia, spermatogenic failure 27, spermatogenic failure 50
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): primary ciliary dyskinesia, spermatogenic failure 27