AK8
gene geneOn this page
Also known as FLJ32704
Summary
AK8 (adenylate kinase 8, HGNC:26526) is a protein-coding gene on chromosome 9q34.13, encoding Adenylate kinase 8 (Q96MA6). Nucleoside monophosphate (NMP) kinase that catalyzes the reversible transfer of the terminal phosphate group between nucleoside triphosphates and monophosphates.
Enables AMP binding activity and nucleobase-containing compound kinase activity. Predicted to be involved in nucleoside monophosphate phosphorylation. Predicted to act upstream of or within ventricular system development. Located in 9+2 motile cilium.
Source: NCBI Gene 158067 — RefSeq curated summary.
At a glance
- GWAS associations: 3
- Clinical variants (ClinVar): 89 total — 3 pathogenic
- MANE Select transcript:
NM_152572
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:26526 |
| Approved symbol | AK8 |
| Name | adenylate kinase 8 |
| Location | 9q34.13 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | FLJ32704 |
| Ensembl gene | ENSG00000165695 |
| Ensembl biotype | protein_coding |
| OMIM | 615365 |
| Entrez | 158067 |
Gene structure
Transcript identifiers
Ensembl transcripts: 11 — 7 protein_coding, 4 protein_coding_CDS_not_defined
ENST00000298545, ENST00000467161, ENST00000476719, ENST00000477396, ENST00000482422, ENST00000885291, ENST00000885292, ENST00000885293, ENST00000885294, ENST00000930666, ENST00000942971
RefSeq mRNA: 7 — MANE Select: NM_152572
NM_001317958, NM_001317959, NM_001371771, NM_001371772, NM_001371773, NM_001371774, NM_152572
CCDS: CCDS6954
Canonical transcript exons
ENST00000298545 — 13 exons
| Exon | Start | End |
|---|---|---|
| ENSE00003459899 | 132878172 | 132878284 |
| ENSE00003465305 | 132828645 | 132828726 |
| ENSE00003465403 | 132823205 | 132823336 |
| ENSE00003491314 | 132814638 | 132814727 |
| ENSE00003535039 | 132866904 | 132866953 |
| ENSE00003574512 | 132725578 | 132725925 |
| ENSE00003578566 | 132875115 | 132875199 |
| ENSE00003585649 | 132826854 | 132827054 |
| ENSE00003588100 | 132792634 | 132792775 |
| ENSE00003621094 | 132727454 | 132727534 |
| ENSE00003638023 | 132828013 | 132828084 |
| ENSE00003638073 | 132863665 | 132863778 |
| ENSE00003684101 | 132854857 | 132854925 |
Expression profiles
Bgee: expression breadth ubiquitous, 166 present calls, max score 94.61.
FANTOM5 (CAGE): breadth broad, TPM avg 1.5739 / max 91.1192, expressed in 740 samples.
FANTOM5 promoters (2 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 102910 | 1.4201 | 680 |
| 102911 | 0.1538 | 62 |
Top tissues by expression
248 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| right uterine tube | UBERON:0001302 | 94.61 | gold quality |
| cardiac muscle of right atrium | UBERON:0003379 | 94.37 | gold quality |
| kidney epithelium | UBERON:0004819 | 94.00 | gold quality |
| bronchial epithelial cell | CL:0002328 | 93.84 | gold quality |
| left ventricle myocardium | UBERON:0006566 | 93.34 | gold quality |
| bronchus | UBERON:0002185 | 93.15 | gold quality |
| left testis | UBERON:0004533 | 88.06 | gold quality |
| myocardium | UBERON:0002349 | 88.04 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 87.78 | gold quality |
| upper arm skin | UBERON:0004263 | 87.52 | gold quality |
| right testis | UBERON:0004534 | 87.50 | gold quality |
| vastus lateralis | UBERON:0001379 | 87.14 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 86.95 | gold quality |
| skeletal muscle tissue of biceps brachii | UBERON:0004502 | 86.70 | gold quality |
| olfactory segment of nasal mucosa | UBERON:0005386 | 86.38 | gold quality |
| testis | UBERON:0000473 | 86.05 | gold quality |
| quadriceps femoris | UBERON:0001377 | 85.89 | gold quality |
| biceps brachii | UBERON:0001507 | 85.81 | gold quality |
| sperm | CL:0000019 | 83.23 | silver quality |
| epithelial cell of pancreas | CL:0000083 | 82.96 | gold quality |
| skeletal muscle tissue of rectus abdominis | UBERON:0004511 | 82.94 | gold quality |
| corpus epididymis | UBERON:0004359 | 82.86 | gold quality |
| caput epididymis | UBERON:0004358 | 81.86 | gold quality |
| mucosa of paranasal sinus | UBERON:0005030 | 81.33 | silver quality |
| parotid gland | UBERON:0001831 | 81.31 | gold quality |
| oviduct epithelium | UBERON:0004804 | 80.87 | gold quality |
| epithelium of nasopharynx | UBERON:0001951 | 80.06 | silver quality |
| fallopian tube | UBERON:0003889 | 79.91 | gold quality |
| lateral nuclear group of thalamus | UBERON:0002736 | 79.87 | gold quality |
| subthalamic nucleus | UBERON:0001906 | 79.82 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 6.22 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
5 targeting AK8, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-3119 | 99.92 | 71.34 | 2390 |
| HSA-MIR-4731-5P | 99.89 | 67.23 | 2537 |
| HSA-MIR-5787 | 99.22 | 67.86 | 2628 |
| HSA-MIR-328-5P | 99.08 | 64.65 | 1000 |
| HSA-MIR-5586-5P | 96.29 | 68.02 | 685 |
Literature-anchored findings (GeneRIF, showing 1)
- Both AK7 and full-length AK8 showed highest affinity for AMP with ATP as the phosphate donor, and proved to be more efficient in AMP phosphorylation as compared with the major cytosolic isoform AK1 (PMID:21080915)
Cross-species orthologs
4 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| mus_musculus | Ak8 | ENSMUSG00000026807 |
| rattus_norvegicus | Ak8 | ENSRNOG00000012761 |
| drosophila_melanogaster | CG9541 | FBGN0032083 |
| caenorhabditis_elegans | WBGENE00008746 |
Paralogs (9): AK2 (ENSG00000004455), AK1 (ENSG00000106992), AK7 (ENSG00000140057), AK3 (ENSG00000147853), AK5 (ENSG00000154027), AK9 (ENSG00000155085), CMPK1 (ENSG00000162368), AK4 (ENSG00000162433), AK4P3 (ENSG00000233381)
Protein
Protein identifiers
Adenylate kinase 8 — Q96MA6 (reviewed: Q96MA6)
Alternative names: ATP-AMP transphosphorylase 8
All UniProt accessions (1): Q96MA6
UniProt curated annotations — full annotation on UniProt →
Function. Nucleoside monophosphate (NMP) kinase that catalyzes the reversible transfer of the terminal phosphate group between nucleoside triphosphates and monophosphates. Has highest activity toward AMP, and weaker activity toward dAMP, CMP and dCMP. Also displays broad nucleoside diphosphate kinase activity.
Subunit / interactions. Interacts with CFAP45 and CFAP52; CFAP45 and AK8 dimerization may create a cavity at the interface of the dimer that can accommodate AMP.
Subcellular location. Cytoplasm. Cytosol. Cytoskeleton. Cilium axoneme.
Tissue specificity. Expressed in respiratory cells (at protein level).
Similarity. Belongs to the adenylate kinase family.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q96MA6-1 | 1 | yes |
| Q96MA6-2 | 2 |
RefSeq proteins (7): NP_001304887, NP_001304888, NP_001358700, NP_001358701, NP_001358702, NP_001358703, NP_689785* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000850 | Adenylat/UMP-CMP_kin | Family |
| IPR027417 | P-loop_NTPase | Homologous_superfamily |
| IPR036193 | ADK_active_lid_dom_sf | Homologous_superfamily |
Pfam: PF00406
Enzyme classification (BRENDA):
- EC 2.7.4.3 — adenylate kinase (BRENDA: 73 organisms, 259 substrates, 134 inhibitors, 192 Km, 47 kcat entries)
Substrate kinetics (BRENDA)
9 substrates with measured Km, best-characterized 9. Km ranges are aggregated across organisms/conditions.
| Substrate | Km (mM) | Measurements |
|---|---|---|
| AMP | 0.0014–1.9 | 59 |
| ATP | 0.0001–7 | 58 |
| ADP | 0.003–16.8 | 27 |
| 2 ADP | 0.006–0.15 | 5 |
| DAMP | 0.507–2 | 2 |
| 2’-DAMP | 0.85 | 1 |
| 7-DEAZAADENOSINE 5’-MONOPHOSPHATE | 0.73 | 1 |
| ADP3- | 0.03 | 1 |
| CMP | 0.0002 | 1 |
Catalyzed reactions (Rhea), 3 shown:
- AMP + ATP = 2 ADP (RHEA:12973)
- a ribonucleoside 5’-diphosphate + ATP = a ribonucleoside 5’-triphosphate + ADP (RHEA:18113)
- a 2’-deoxyribonucleoside 5’-diphosphate + ATP = a 2’-deoxyribonucleoside 5’-triphosphate + ADP (RHEA:44640)
UniProt features (19 total): binding site 9, region of interest 6, sequence variant 2, chain 1, splice variant 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q96MA6-F1 | 87.47 | 0.53 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Ligand- & substrate-binding residues (9): 203; 278–283; 325–327; 354–357; 361; 392; 67–72; 140–143; 147
Function
Pathways and Gene Ontology
Reactome pathways
3 pathways
| ID | Pathway |
|---|---|
| R-HSA-499943 | Interconversion of nucleotide di- and triphosphates |
| R-HSA-1430728 | Metabolism |
| R-HSA-15869 | Metabolism of nucleotides |
MSigDB gene sets: 99 (showing top):
GOBP_ORGANOPHOSPHATE_METABOLIC_PROCESS, MEF2_02, GOBP_NUCLEOSIDE_PHOSPHATE_BIOSYNTHETIC_PROCESS, GOBP_VENTRICULAR_SYSTEM_DEVELOPMENT, GOBP_ORGANOPHOSPHATE_BIOSYNTHETIC_PROCESS, NKX61_01, GOBP_NUCLEOBASE_CONTAINING_SMALL_MOLECULE_METABOLIC_PROCESS, GOBP_HEAD_DEVELOPMENT, RYTTCCTG_ETS2_B, GOBP_NUCLEOSIDE_MONOPHOSPHATE_METABOLIC_PROCESS, CDPCR3HD_01, PITX2_Q2, GOCC_CYTOPLASMIC_REGION, GOCC_MOTILE_CILIUM, MEF2_03
GO Biological Process (5): ventricular system development (GO:0021591), nucleobase-containing compound metabolic process (GO:0006139), nucleotide metabolic process (GO:0009117), nucleoside monophosphate metabolic process (GO:0009123), nucleoside monophosphate phosphorylation (GO:0046940)
GO Molecular Function (11): AMP kinase activity (GO:0004017), nucleoside diphosphate kinase activity (GO:0004550), ATP binding (GO:0005524), AMP binding (GO:0016208), dCMP kinase activity (GO:0036431), nucleotide binding (GO:0000166), protein binding (GO:0005515), kinase activity (GO:0016301), transferase activity (GO:0016740), phosphotransferase activity, phosphate group as acceptor (GO:0016776), nucleobase-containing compound kinase activity (GO:0019205)
GO Cellular Component (7): cytoplasm (GO:0005737), cytosol (GO:0005829), axoneme (GO:0005930), sperm flagellum (GO:0036126), 9+2 motile cilium (GO:0097729), cytoskeleton (GO:0005856), cell projection (GO:0042995)
Reactome top-level categories
Rollup of top-2 pathways:
| Category | Pathways |
|---|---|
| Metabolism of nucleotides | 1 |
| Metabolism | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 4 |
| nucleoside phosphate metabolic process | 2 |
| adenyl ribonucleotide binding | 2 |
| transferase activity, transferring phosphorus-containing groups | 2 |
| brain development | 1 |
| system development | 1 |
| primary metabolic process | 1 |
| nucleoside monophosphate metabolic process | 1 |
| nucleotide biosynthetic process | 1 |
| nucleoside monophosphate kinase activity | 1 |
| phosphotransferase activity, phosphate group as acceptor | 1 |
| nucleobase-containing compound kinase activity | 1 |
| purine ribonucleoside triphosphate binding | 1 |
| anion binding | 1 |
| cation binding | 1 |
| deoxynucleoside phosphate kinase activity, ATP as phosphate donor | 1 |
| nucleoside phosphate binding | 1 |
| heterocyclic compound binding | 1 |
| binding | 1 |
| catalytic activity | 1 |
| kinase activity | 1 |
| intracellular anatomical structure | 1 |
| cytoplasm | 1 |
| cytoskeleton | 1 |
| microtubule | 1 |
| ciliary plasm | 1 |
| 9+2 motile cilium | 1 |
| radial spoke | 1 |
| motile cilium | 1 |
| inner dynein arm | 1 |
| outer dynein arm | 1 |
| axonemal central pair | 1 |
| axonemal doublet microtubule | 1 |
| intracellular membraneless organelle | 1 |
Protein interactions and networks
STRING
2761 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| AK8 | AK7 | Q96M32 | 812 |
| AK8 | AK9 | Q5TCS8 | 566 |
| AK8 | CATIP | Q7Z7H3 | 526 |
| AK8 | TPGS1 | Q6ZTW0 | 504 |
| AK8 | GUCY1B1 | Q02153 | 488 |
| AK8 | SNAPC4 | Q5SXM2 | 476 |
| AK8 | SURF6 | O75683 | 475 |
| AK8 | AK6 | Q9Y3D8 | 470 |
| AK8 | TMCO5A | Q8N6Q1 | 460 |
| AK8 | SPACA9 | Q96E40 | 450 |
| AK8 | TEX55 | Q96M34 | 446 |
| AK8 | NME5 | P56597 | 444 |
| AK8 | CAMSAP1 | Q5T5Y3 | 443 |
| AK8 | FBXL13 | Q8NEE6 | 442 |
| AK8 | PMPCA | Q10713 | 438 |
IntAct
82 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| AK8 | MAP3K7CL | psi-mi:“MI:0915”(physical association) | 0.720 |
| MAP3K7CL | AK8 | psi-mi:“MI:0915”(physical association) | 0.720 |
| AK8 | MCM7 | psi-mi:“MI:0915”(physical association) | 0.670 |
| MCM7 | AK8 | psi-mi:“MI:0915”(physical association) | 0.670 |
| CCDC102B | AK8 | psi-mi:“MI:0915”(physical association) | 0.560 |
| AK8 | RBM39 | psi-mi:“MI:0915”(physical association) | 0.560 |
| HAUS1 | AK8 | psi-mi:“MI:0915”(physical association) | 0.560 |
| ZMAT2 | AK8 | psi-mi:“MI:0915”(physical association) | 0.560 |
| AK8 | ALKBH3 | psi-mi:“MI:0915”(physical association) | 0.560 |
| UBE2Z | AK8 | psi-mi:“MI:0915”(physical association) | 0.560 |
| MID1IP1 | AK8 | psi-mi:“MI:0915”(physical association) | 0.560 |
| AK8 | CCDC102B | psi-mi:“MI:0915”(physical association) | 0.560 |
| AK8 | HAUS1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| ALKBH3 | AK8 | psi-mi:“MI:0915”(physical association) | 0.560 |
| AK8 | UBE2Z | psi-mi:“MI:0915”(physical association) | 0.560 |
| AK8 | MID1IP1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| RBM39 | AK8 | psi-mi:“MI:0915”(physical association) | 0.560 |
BioGRID (19): AK8 (Two-hybrid), AK8 (Two-hybrid), AK8 (Two-hybrid), AK8 (Two-hybrid), AK8 (Two-hybrid), AK8 (Two-hybrid), AK8 (Two-hybrid), AK8 (Two-hybrid), ALKBH3 (Two-hybrid), AK8 (Biochemical Activity), AK8 (Two-hybrid), AK8 (Two-hybrid), AK8 (Two-hybrid), AK8 (Two-hybrid), AK8 (Two-hybrid)
ESM2 similar proteins: A0A4X1T4U3, A4IFD0, O00329, O14936, O35904, O61069, O65583, O70589, P07953, P16118, P25114, P49872, P70266, Q13057, Q16875, Q16877, Q24210, Q28901, Q298L5, Q2UM43, Q32M07, Q4R3W4, Q4R8B6, Q4V8A1, Q502L7, Q5B5L3, Q5M7G4, Q5R9C1, Q623S8, Q62915, Q68FP8, Q6DGQ8, Q6DTY7, Q6P618, Q80UN9, Q8IMX7, Q8MIR4, Q91309, Q91348, Q91YL3
Diamond homologs: A0A4X1T4U3, A0K9X1, A0PXW7, A0R8K1, A1AVD5, A1TQ96, A1V117, A1VNK2, A1W895, A1WSH6, A2S516, A3M3G1, A3MN48, A3N6K4, A3NS87, A4J592, A4SVI8, A4XLR0, A7GK41, A7Z0Q9, A9AGK1, A9BWI1, A9VP98, B0TC77, B0UT69, B0V9Q9, B0VSA9, B1I8L9, B1JXF8, B1Y6I7, B1YVE0, B2HVT0, B2IS63, B2JDV1, B3R0X7, B4E9G1, B5E6H6, B5YHP1, B7GXT4, B7HJ69
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
89 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 3 |
| Likely pathogenic | 0 |
| Uncertain significance | 74 |
| Likely benign | 4 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (3)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1176589 | GRCh37/hg19 9q34.13(chr9:135668021-135804259)x1 | Pathogenic |
| 397550 | NC_000009.11:g.(135750586_135753559)_(135772997_135776102)del | Pathogenic |
| 872680 | GRCh37/hg19 9q34.13(chr9:135668021-135804259)x3 | Pathogenic |
SpliceAI
3388 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 9:132725921:GGTAC:G | acceptor_gain | 1.0000 |
| 9:132725926:C:CC | acceptor_gain | 1.0000 |
| 9:132725926:CTGCA:C | acceptor_loss | 1.0000 |
| 9:132725927:T:A | acceptor_loss | 1.0000 |
| 9:132727457:T:A | donor_gain | 1.0000 |
| 9:132727531:CACC:C | acceptor_gain | 1.0000 |
| 9:132727532:ACCC:A | acceptor_loss | 1.0000 |
| 9:132727533:CC:C | acceptor_gain | 1.0000 |
| 9:132727534:CC:C | acceptor_gain | 1.0000 |
| 9:132727534:CCTA:C | acceptor_loss | 1.0000 |
| 9:132727535:C:CA | acceptor_loss | 1.0000 |
| 9:132727536:T:G | acceptor_loss | 1.0000 |
| 9:132792628:GCTCA:G | donor_loss | 1.0000 |
| 9:132792629:CTCA:C | donor_loss | 1.0000 |
| 9:132792630:TCA:T | donor_loss | 1.0000 |
| 9:132792631:CA:C | donor_loss | 1.0000 |
| 9:132792633:C:CA | donor_loss | 1.0000 |
| 9:132792771:AGGAA:A | acceptor_gain | 1.0000 |
| 9:132792772:GGAA:G | acceptor_gain | 1.0000 |
| 9:132792773:GAA:G | acceptor_gain | 1.0000 |
| 9:132792774:AA:A | acceptor_gain | 1.0000 |
| 9:132792776:C:CC | acceptor_gain | 1.0000 |
| 9:132814728:C:CC | acceptor_gain | 1.0000 |
| 9:132826852:AC:A | donor_gain | 1.0000 |
| 9:132826853:CC:C | donor_gain | 1.0000 |
| 9:132826950:C:CA | donor_gain | 1.0000 |
| 9:132827050:AATCT:A | acceptor_gain | 1.0000 |
| 9:132827053:CT:C | acceptor_gain | 1.0000 |
| 9:132827054:TC:T | acceptor_loss | 1.0000 |
| 9:132827055:C:CC | acceptor_gain | 1.0000 |
AlphaMissense
3166 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 9:132828723:A:G | W136R | 0.996 |
| 9:132828723:A:T | W136R | 0.996 |
| 9:132827035:A:C | F192L | 0.995 |
| 9:132827035:A:T | F192L | 0.995 |
| 9:132827037:A:G | F192L | 0.995 |
| 9:132828047:T:A | R174S | 0.995 |
| 9:132828047:T:G | R174S | 0.995 |
| 9:132792707:A:G | W350R | 0.994 |
| 9:132792707:A:T | W350R | 0.994 |
| 9:132866933:C:G | G64R | 0.994 |
| 9:132875183:A:G | L34P | 0.994 |
| 9:132823241:C:G | A285P | 0.993 |
| 9:132828048:C:G | R174T | 0.993 |
| 9:132725743:A:T | V462D | 0.991 |
| 9:132823257:A:C | S279R | 0.991 |
| 9:132823257:A:T | S279R | 0.991 |
| 9:132823259:T:G | S279R | 0.991 |
| 9:132828057:A:G | L171P | 0.991 |
| 9:132863768:A:G | L77P | 0.991 |
| 9:132863778:C:G | A74P | 0.991 |
| 9:132866932:C:T | G64D | 0.991 |
| 9:132866938:A:T | I62K | 0.990 |
| 9:132727493:C:G | R388P | 0.989 |
| 9:132823270:C:T | G275E | 0.989 |
| 9:132827049:A:C | Y188D | 0.989 |
| 9:132823333:A:G | L254P | 0.988 |
| 9:132823231:A:C | L288R | 0.987 |
| 9:132823271:C:G | G275R | 0.987 |
| 9:132823271:C:T | G275R | 0.987 |
| 9:132725765:C:A | G455W | 0.986 |
dbSNP variants (sampled 300 via entrez): RS1000012 (9:132827654 A>C,T), RS1000012188 (9:132862955 G>A), RS1000022193 (9:132787051 G>A), RS1000040966 (9:132770070 C>A,G,T), RS1000055535 (9:132804833 A>C,G,T), RS1000058959 (9:132781689 T>C), RS1000074596 (9:132786837 A>G,T), RS1000088886 (9:132763159 T>C), RS1000118044 (9:132765313 A>G), RS1000134964 (9:132782319 G>A), RS1000176957 (9:132844130 G>C), RS1000233824 (9:132736024 AT>A), RS1000250553 (9:132844396 A>G,T), RS1000256533 (9:132857327 G>A), RS1000294128 (9:132872961 G>A,C)
Disease associations
OMIM: gene MIM:615365 | disease phenotypes: MIM:191100
GenCC curated gene-disease
Mondo (2): developmental and epileptic encephalopathy (MONDO:0100620), tuberous sclerosis 1 (MONDO:0008612)
Orphanet (1): Tuberous sclerosis complex (Orphanet:805)
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
3 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST000246_1 | Attention deficit hyperactivity disorder | 6.000000e-08 |
| GCST001762_689 | Obesity-related traits | 5.000000e-06 |
| GCST001850_43 | Major depressive disorder | 8.000000e-06 |
EFO canonical traits (1, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004810 | interleukin-6 measurement |
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| C565346 | Tuberous Sclerosis 1 (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
18 total (human), top 18 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Benzo(a)pyrene | affects methylation, decreases expression | 2 |
| Smoke | decreases expression, increases abundance, increases expression | 2 |
| bisphenol A | decreases methylation | 1 |
| trichostatin A | affects expression | 1 |
| ferrous chloride | decreases expression | 1 |
| S-(1,2-dichlorovinyl)cysteine | affects response to substance, increases expression, affects cotreatment | 1 |
| jinfukang | increases expression | 1 |
| Fulvestrant | decreases methylation | 1 |
| Air Pollutants | increases abundance, increases expression | 1 |
| Cisplatin | decreases expression | 1 |
| Lipopolysaccharides | affects response to substance, increases expression, affects cotreatment | 1 |
| Phthalic Acids | increases methylation | 1 |
| Silicon Dioxide | decreases expression | 1 |
| Sodium Dodecyl Sulfate | increases expression | 1 |
| Tobacco Smoke Pollution | decreases expression | 1 |
| Valproic Acid | increases methylation | 1 |
| Aflatoxin B1 | decreases expression | 1 |
| Okadaic Acid | decreases expression | 1 |
Clinical trials (associated diseases)
26 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT03347526 | PHASE3 | SUSPENDED | A Novel Approach to Infantile Spasms |
| NCT03421496 | PHASE3 | TERMINATED | A Study to Assess Cannabidiol Oral Solution With Vigabatrin as Initial Therapy in Participants With Infantile Spasms |
| NCT06719141 | PHASE3 | RECRUITING | A Study to Investigate LP352 in Children and Adults With Developmental and Epileptic Encephalopathies (DEE) |
| NCT06908226 | PHASE3 | ENROLLING_BY_INVITATION | A Study to Investigate LP352 in Children and Adults With Developmental and Epileptic Encephalopathy (DEE) |
| NCT04289467 | PHASE2 | RECRUITING | Treatment of Refractory Infantile Spasms With Fenfluramine |
| NCT05626634 | PHASE2 | COMPLETED | Open-label, Long-term Safety Study of LP352 in Subjects With Developmental and Epileptic Encephalopathy |
| NCT02201212 | PHASE2 | COMPLETED | Everolimus for Cancer With TSC1 or TSC2 Mutation |
| NCT05103358 | PHASE2 | ACTIVE_NOT_RECRUITING | Phase 2 Basket Trial of Nab-sirolimus in Patients With Malignant Solid Tumors With Pathogenic Alterations in TSC1/TSC2 Genes (PRECISION 1) |
| NCT04727970 | PHASE1 | COMPLETED | Tricaprilin Infantile Spasms Pilot Study |
| NCT06700811 | PHASE1 | RECRUITING | Ketogenic Diet for Prevention of Epileptic Spasms in Infantile Onset Genetic Epilepsies |
| NCT03876444 | PHASE2/PHASE3 | UNKNOWN | Intravenous Methylprednisolone Versus Oral Prednisolone for Infantile Spasms |
| NCT05279118 | PHASE2/PHASE3 | ACTIVE_NOT_RECRUITING | Ketogenic Diet vs ACTH for the Treatment of Children With West Syndrome |
| NCT05364021 | PHASE1/PHASE2 | COMPLETED | Study to Investigate LP352 in Subjects With Developmental and Epileptic Encephalopathies |
| NCT06983158 | PHASE1/PHASE2 | SUSPENDED | A Clinical Trial of CAP-002 Gene Therapy in Pediatric Patients With Syntaxin-Binding Protein 1 (STXBP1) Encephalopathy |
| NCT04937062 | EARLY_PHASE1 | ACTIVE_NOT_RECRUITING | Phenylbutyrate for Monogenetic Developmental and Epileptic Encephalopathy |
| NCT04302116 | Not specified | RECRUITING | Vigabatrin With High Dose Prednisolone Combination Therapy vs Vigabatrin Alone for Infantile Spasm |
| NCT05538936 | Not specified | COMPLETED | The Effect of Spa and Massage on Babies on Colic Symptoms |
| NCT06149663 | Not specified | AVAILABLE | Intermediate-Size Expanded Access Protocol (EAP) for LP352 |
| NCT06266234 | Not specified | RECRUITING | Characterization by Automated System on Infantile Spasmes |
| NCT06380192 | Not specified | RECRUITING | Developmental and Epileptic Encephalopathy of Genetic Etiology: Natural History Through Reuse of Clinical Data |
| NCT07396883 | Not specified | NOT_YET_RECRUITING | Developmental and Epileptic Encephalopathies Diagnosed Via Long-read Genome Sequencing |
| NCT07413211 | Not specified | RECRUITING | Genetic Developmental and Epileptic Encephalopathy Natural History Study for Clinical Trial Readiness |
| NCT07531511 | Not specified | NOT_YET_RECRUITING | SLC6A1-NDD Prospective Longitudinal Natural History Study |
| NCT07585643 | Not specified | NOT_YET_RECRUITING | IBIS - Investigating Reliability of BIS and SEDLINE Monitoring in Children With Developmental and Epileptic Encephalopathies (DEE). |
| NCT03655223 | Not specified | ENROLLING_BY_INVITATION | Early Check: Expanded Screening in Newborns |
| NCT03817515 | Not specified | APPROVED_FOR_MARKETING | Expanded Access for ABI-009 in Patients With Advanced PEComa and Patients With a Malignancy With Relevant Genetic Mutations or mTOR Pathway Activation |
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): developmental and epileptic encephalopathy, tuberous sclerosis 1