ALDH1L1-AS1

Summary

ALDH1L1-AS1 (ALDH1L1 antisense RNA 1, HGNC:40244) is a long non-coding RNA gene on chromosome 3q21.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:40244
Approved symbol	ALDH1L1-AS1
Name	ALDH1L1 antisense RNA 1
Location	3q21.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000250218
Ensembl biotype	lncRNA
Entrez	100874204
RNAcentral	URS0002853B58 — lncRNA, 1260 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 6 — 6 lncRNA

ENST00000507924, ENST00000511301, ENST00000512384, ENST00000656531, ENST00000661819, ENST00000718059

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000507924 — 8 exons

Exon	Start	End
ENSE00002053489	126092565	126092721
ENSE00002055197	126084327	126084452
ENSE00002058327	126095189	126095481
ENSE00004034005	126103457	126103666
ENSE00004034006	126105533	126108046
ENSE00004034007	126103824	126103965
ENSE00004034008	126096276	126096326
ENSE00004034011	126104611	126104692

Expression profiles

Bgee: expression breadth ubiquitous, 112 present calls, max score 82.77.

Top tissues by expression

112 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	82.77	silver quality
ganglionic eminence	UBERON:0004023	68.04	gold quality
right lobe of liver	UBERON:0001114	66.99	gold quality
hindlimb stylopod muscle	UBERON:0004252	66.67	gold quality
liver	UBERON:0002107	66.58	gold quality
skeletal muscle tissue	UBERON:0001134	64.56	gold quality
primary visual cortex	UBERON:0002436	63.64	gold quality
amygdala	UBERON:0001876	62.92	gold quality
bone marrow	UBERON:0002371	60.17	gold quality
caudate nucleus	UBERON:0001873	60.15	gold quality
Brodmann (1909) area 9	UBERON:0013540	60.08	gold quality
nucleus accumbens	UBERON:0001882	59.73	gold quality
muscle of leg	UBERON:0001383	59.67	gold quality
superior frontal gyrus	UBERON:0002661	59.42	gold quality
cortex of kidney	UBERON:0001225	59.36	gold quality
ascending aorta	UBERON:0001496	59.18	gold quality
thoracic aorta	UBERON:0001515	59.01	gold quality
lower esophagus mucosa	UBERON:0035834	58.97	gold quality
putamen	UBERON:0001874	58.85	gold quality
descending thoracic aorta	UBERON:0002345	58.85	gold quality
gastrocnemius	UBERON:0001388	58.78	gold quality
metanephros cortex	UBERON:0010533	58.72	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	58.42	gold quality
prefrontal cortex	UBERON:0000451	58.39	gold quality
tibial artery	UBERON:0007610	58.34	gold quality
popliteal artery	UBERON:0002250	58.24	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	58.15	gold quality
cerebral cortex	UBERON:0000956	57.40	gold quality
right hemisphere of cerebellum	UBERON:0014890	57.37	gold quality
frontal cortex	UBERON:0001870	57.33	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.28

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.