ALDH8A1
gene geneOn this page
Also known as ALDH12
Summary
ALDH8A1 (aldehyde dehydrogenase 8 family member A1, HGNC:15471) is a protein-coding gene on chromosome 6q23.3, encoding 2-aminomuconic semialdehyde dehydrogenase (Q9H2A2). Catalyzes the NAD-dependent oxidation of 2-aminomuconic semialdehyde of the kynurenine metabolic pathway in L-tryptophan degradation.
This gene encodes a member of the aldehyde dehydrogenase family of proteins. The encoded protein has been implicated in the synthesis of 9-cis-retinoic acid and in the breakdown of the amino acid tryptophan. This enzyme converts 9-cis-retinal into the retinoid X receptor ligand 9-cis-retinoic acid, and has approximately 40-fold higher activity with 9-cis-retinal than with all-trans-retinal. In addition, this enzyme has been shown to catalyze the conversion of 2-aminomuconic semialdehyde to 2-aminomuconate in the kynurenine pathway of tryptophan catabolism.
Source: NCBI Gene 64577 — RefSeq curated summary.
At a glance
- GWAS associations: 34
- Clinical variants (ClinVar): 59 total — 1 pathogenic
- MANE Select transcript:
NM_022568
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:15471 |
| Approved symbol | ALDH8A1 |
| Name | aldehyde dehydrogenase 8 family member A1 |
| Location | 6q23.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | ALDH12 |
| Ensembl gene | ENSG00000118514 |
| Ensembl biotype | protein_coding |
| OMIM | 606467 |
| Entrez | 64577 |
Gene structure
Transcript identifiers
Ensembl transcripts: 12 — 11 protein_coding, 1 nonsense_mediated_decay
ENST00000265605, ENST00000349305, ENST00000367845, ENST00000367847, ENST00000460753, ENST00000534012, ENST00000876151, ENST00000876152, ENST00000876153, ENST00000876154, ENST00000876155, ENST00000876156
RefSeq mRNA: 3 — MANE Select: NM_022568
NM_001193480, NM_022568, NM_170771
CCDS: CCDS5171, CCDS5172, CCDS55057
Canonical transcript exons
ENST00000265605 — 7 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000798803 | 134929054 | 134929215 |
| ENSE00000798806 | 134942409 | 134942564 |
| ENSE00000798807 | 134943819 | 134943966 |
| ENSE00001215372 | 134917393 | 134918867 |
| ENSE00002153632 | 134949916 | 134950101 |
| ENSE00003499708 | 134939266 | 134939415 |
| ENSE00003658161 | 134932776 | 134933032 |
Expression profiles
Bgee: expression breadth ubiquitous, 211 present calls, max score 98.60.
FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.5184 / max 240.9100, expressed in 21 samples.
FANTOM5 promoters (3 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 75698 | 0.4465 | 21 |
| 75697 | 0.0449 | 10 |
| 75699 | 0.0271 | 8 |
Top tissues by expression
278 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| nephron tubule | UBERON:0001231 | 98.60 | gold quality |
| liver | UBERON:0002107 | 97.93 | gold quality |
| kidney epithelium | UBERON:0004819 | 97.90 | gold quality |
| renal glomerulus | UBERON:0000074 | 97.38 | gold quality |
| right lobe of liver | UBERON:0001114 | 97.17 | gold quality |
| metanephric glomerulus | UBERON:0004736 | 97.02 | gold quality |
| adult mammalian kidney | UBERON:0000082 | 92.49 | gold quality |
| renal medulla | UBERON:0000362 | 91.97 | gold quality |
| kidney | UBERON:0002113 | 90.79 | gold quality |
| cortex of kidney | UBERON:0001225 | 89.21 | gold quality |
| metanephros | UBERON:0000081 | 85.32 | gold quality |
| adult organism | UBERON:0007023 | 84.31 | gold quality |
| metanephros cortex | UBERON:0010533 | 80.70 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 80.32 | silver quality |
| inferior olivary complex | UBERON:0002127 | 79.53 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 78.29 | gold quality |
| Brodmann (1909) area 23 | UBERON:0013554 | 77.16 | gold quality |
| primary visual cortex | UBERON:0002436 | 76.26 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 74.21 | gold quality |
| cerebellar cortex | UBERON:0002129 | 73.94 | gold quality |
| right hemisphere of cerebellum | UBERON:0014890 | 73.47 | gold quality |
| dorsal motor nucleus of vagus nerve | UBERON:0002870 | 73.12 | silver quality |
| parietal pleura | UBERON:0002400 | 72.87 | gold quality |
| cerebellum | UBERON:0002037 | 72.60 | gold quality |
| lower esophagus muscularis layer | UBERON:0035833 | 72.24 | gold quality |
| lower esophagus | UBERON:0013473 | 72.20 | gold quality |
| occipital lobe | UBERON:0002021 | 71.82 | gold quality |
| middle temporal gyrus | UBERON:0002771 | 71.43 | gold quality |
| mucosa of stomach | UBERON:0001199 | 71.05 | gold quality |
| right frontal lobe | UBERON:0002810 | 71.01 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
45 targeting ALDH8A1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4282 | 99.99 | 75.36 | 6408 |
| HSA-MIR-103A-3P | 99.98 | 69.14 | 1595 |
| HSA-MIR-107 | 99.98 | 69.14 | 1595 |
| HSA-MIR-6778-3P | 99.96 | 67.29 | 2693 |
| HSA-MIR-7-1-3P | 99.91 | 71.53 | 4384 |
| HSA-MIR-7-2-3P | 99.91 | 71.40 | 4394 |
| HSA-MIR-380-3P | 99.89 | 70.18 | 1978 |
| HSA-LET-7A-2-3P | 99.87 | 70.53 | 1921 |
| HSA-LET-7G-3P | 99.85 | 70.43 | 1929 |
| HSA-MIR-6515-3P | 99.82 | 68.19 | 1933 |
| HSA-MIR-448 | 99.79 | 72.37 | 2103 |
| HSA-MIR-4694-3P | 99.79 | 69.53 | 2640 |
| HSA-MIR-3059-5P | 99.70 | 69.93 | 2491 |
| HSA-MIR-4804-3P | 99.65 | 67.78 | 866 |
| HSA-MIR-141-5P | 99.57 | 67.86 | 897 |
| HSA-MIR-5689 | 99.50 | 71.26 | 1154 |
| HSA-MIR-519D-5P | 99.41 | 69.30 | 2057 |
| HSA-MIR-103A-1-5P | 99.39 | 67.78 | 1545 |
| HSA-MIR-103A-2-5P | 99.39 | 67.72 | 1577 |
| HSA-MIR-1244 | 99.33 | 68.38 | 832 |
| HSA-MIR-1264 | 99.25 | 66.81 | 1317 |
| HSA-MIR-4727-5P | 99.23 | 67.55 | 1154 |
| HSA-MIR-4478 | 99.07 | 65.16 | 2320 |
| HSA-MIR-670-3P | 99.03 | 68.88 | 2404 |
| HSA-MIR-6749-3P | 99.00 | 65.73 | 1443 |
| HSA-MIR-4755-3P | 98.77 | 65.59 | 1915 |
| HSA-MIR-5572 | 98.55 | 65.84 | 970 |
| HSA-MIR-302F | 98.44 | 69.02 | 1776 |
| HSA-MIR-6837-3P | 98.42 | 66.71 | 1149 |
| HSA-MIR-4691-5P | 98.41 | 66.77 | 1343 |
Cross-species orthologs
4 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | aldh8a1 | ENSDARG00000036776 |
| mus_musculus | Aldh8a1 | ENSMUSG00000037542 |
| rattus_norvegicus | Aldh8a1 | ENSRNOG00000014907 |
| caenorhabditis_elegans | WBGENE00000116 |
Paralogs (17): ALDH3B1 (ENSG00000006534), ALDH3A2 (ENSG00000072210), ALDH3A1 (ENSG00000108602), ALDH2 (ENSG00000111275), ALDH5A1 (ENSG00000112294), ALDH6A1 (ENSG00000119711), ALDH1A2 (ENSG00000128918), ALDH3B2 (ENSG00000132746), ALDH1L2 (ENSG00000136010), ALDH1B1 (ENSG00000137124), ALDH9A1 (ENSG00000143149), ALDH1L1 (ENSG00000144908), ALDH4A1 (ENSG00000159423), ALDH16A1 (ENSG00000161618), ALDH7A1 (ENSG00000164904), ALDH1A1 (ENSG00000165092), ALDH1A3 (ENSG00000184254)
Protein
Protein identifiers
2-aminomuconic semialdehyde dehydrogenase — Q9H2A2 (reviewed: Q9H2A2)
Alternative names: Aldehyde dehydrogenase 12, Aldehyde dehydrogenase family 8 member A1
All UniProt accessions (3): Q9H2A2, E9PKV1, H0YF40
UniProt curated annotations — full annotation on UniProt →
Function. Catalyzes the NAD-dependent oxidation of 2-aminomuconic semialdehyde of the kynurenine metabolic pathway in L-tryptophan degradation.
Subcellular location. Cytoplasm.
Tissue specificity. Highly expressed in adult kidney and liver. Detected at lower levels in fetal liver and kidney.
Pathway. Amino-acid degradation; L-kynurenine degradation.
Miscellaneous. Lacks enzymatic activity. May be produced at very low levels due to a premature stop codon in the mRNA, leading to nonsense-mediated mRNA decay.
Similarity. Belongs to the aldehyde dehydrogenase family.
Isoforms (4)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q9H2A2-1 | 1 | yes |
| Q9H2A2-2 | 2 | |
| Q9H2A2-3 | 3 | |
| Q9H2A2-4 | 4 |
RefSeq proteins (3): NP_001180409, NP_072090, NP_739577 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR015590 | Aldehyde_DH_dom | Domain |
| IPR016160 | Ald_DH_CS_CYS | Conserved_site |
| IPR016161 | Ald_DH/histidinol_DH | Homologous_superfamily |
| IPR016162 | Ald_DH_N | Homologous_superfamily |
| IPR016163 | Ald_DH_C | Homologous_superfamily |
| IPR029510 | Ald_DH_CS_GLU | Conserved_site |
Pfam: PF00171
Enzyme classification (BRENDA):
- EC 1.2.1.3 — aldehyde dehydrogenase (NAD+) (BRENDA: 46 organisms, 365 substrates, 267 inhibitors, 547 Km, 169 kcat entries)
Substrate kinetics (BRENDA)
128 substrates with measured Km, best-characterized 15. Km ranges are aggregated across organisms/conditions.
| Substrate | Km (mM) | Measurements |
|---|---|---|
| NAD+ | 0.0003–16 | 121 |
| ACETALDEHYDE | 0.0001–80 | 59 |
| PROPANAL | — | 54 |
| BENZALDEHYDE | — | 21 |
| HEXANAL | — | 15 |
| PROPIONALDEHYDE | 0.0028–12 | 15 |
| PHOSPHONOACETALDEHYDE | 0.0032–0.5 | 13 |
| GLYCOLALDEHYDE | 0.005–0.69 | 10 |
| FORMALDEHYDE | 0.031–0.7 | 7 |
| P-NITROBENZALDEHYDE | — | 7 |
| 6-DIMETHYLAMINO-2-NAPHTHALDEHYDE | 0.0017–0.02 | 6 |
| BUTANAL | 0.0002–0.045 | 6 |
| METHYLGLYOXAL | 0.0086–1.876 | 6 |
| NADP+ | 0.27–8.47 | 6 |
| OCTANAL | — | 6 |
Catalyzed reactions (Rhea), 1 shown:
- 2-aminomuconate 6-semialdehyde + NAD(+) + H2O = (2Z,4E)-2-aminomuconate + NADH + 2 H(+) (RHEA:14469)
UniProt features (15 total): splice variant 4, mutagenesis site 3, active site 2, chain 1, sequence variant 1, sequence conflict 1, binding site 1, site 1, modified residue 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q9H2A2-F1 | 97.52 | 0.98 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (3): 253 (proton acceptor); 287 (nucleophile); 155 (transition state stabilizer)
Ligand- & substrate-binding residues (1): 209–215
Post-translational modifications (1): 362
Mutagenesis-validated functional residues (3):
| Position | Phenotype |
|---|---|
| 109 | about 65-fold loss of catalytic efficiency. |
| 155 | complete loss of activity. |
| 451 | complete loss of activity. |
Function
Pathways and Gene Ontology
Reactome pathways
4 pathways
| ID | Pathway |
|---|---|
| R-HSA-5365859 | RA biosynthesis pathway |
| R-HSA-162582 | Signal Transduction |
| R-HSA-5362517 | Signaling by Retinoic Acid |
| R-HSA-9006931 | Signaling by Nuclear Receptors |
MSigDB gene sets: 93 (showing top):
GOBP_ALPHA_AMINO_ACID_METABOLIC_PROCESS, GOBP_REGULATION_OF_HORMONE_LEVELS, GOBP_MONOCARBOXYLIC_ACID_METABOLIC_PROCESS, GOBP_KETONE_METABOLIC_PROCESS, GOBP_ORGANIC_ACID_BIOSYNTHETIC_PROCESS, GOBP_SMALL_MOLECULE_BIOSYNTHETIC_PROCESS, SHETH_LIVER_CANCER_VS_TXNIP_LOSS_PAM4, SHEDDEN_LUNG_CANCER_GOOD_SURVIVAL_A4, GOBP_ORGANIC_ACID_CATABOLIC_PROCESS, GOBP_RETINAL_METABOLIC_PROCESS, GOBP_RETINOIC_ACID_METABOLIC_PROCESS, GOBP_MONOCARBOXYLIC_ACID_BIOSYNTHETIC_PROCESS, GOBP_LIPID_METABOLIC_PROCESS, GOBP_ORGANIC_ACID_METABOLIC_PROCESS, GOBP_SMALL_MOLECULE_CATABOLIC_PROCESS
GO Biological Process (4): retinoic acid metabolic process (GO:0042573), retinal metabolic process (GO:0042574), 9-cis-retinoic acid biosynthetic process (GO:0042904), obsolete L-kynurenine catabolic process (GO:0097053)
GO Molecular Function (4): retinal dehydrogenase (NAD+) activity (GO:0001758), aminomuconate-semialdehyde dehydrogenase activity (GO:0047102), oxidoreductase activity (GO:0016491), oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor (GO:0016620)
GO Cellular Component (3): cytosol (GO:0005829), extracellular exosome (GO:0070062), cytoplasm (GO:0005737)
Reactome top-level categories
Rollup of top-3 pathways:
| Category | Pathways |
|---|---|
| Signaling by Retinoic Acid | 1 |
| Signaling by Nuclear Receptors | 1 |
| Signal Transduction | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| retinoid metabolic process | 2 |
| cellular anatomical structure | 2 |
| monocarboxylic acid metabolic process | 1 |
| hormone metabolic process | 1 |
| aldehyde metabolic process | 1 |
| olefinic compound metabolic process | 1 |
| retinoic acid biosynthetic process | 1 |
| 9-cis-retinoic acid metabolic process | 1 |
| aldehyde dehydrogenase (NAD+) activity | 1 |
| oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | 1 |
| catalytic activity | 1 |
| oxidoreductase activity, acting on the aldehyde or oxo group of donors | 1 |
| cytoplasm | 1 |
| extracellular vesicle | 1 |
| intracellular anatomical structure | 1 |
Protein interactions and networks
STRING
3234 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| ALDH8A1 | ALDH18A1 | P54886 | 615 |
| ALDH8A1 | HBS1L | Q9Y450 | 610 |
| ALDH8A1 | PDE7B | Q9NP56 | 453 |
| ALDH8A1 | AHI1 | Q8N157 | 437 |
| ALDH8A1 | TBPL1 | P62380 | 419 |
| ALDH8A1 | RPS12 | P25398 | 418 |
| ALDH8A1 | ADHFE1 | Q8IWW8 | 416 |
| ALDH8A1 | GRAMD2A | Q8IUY3 | 415 |
| ALDH8A1 | MCEE | Q96PE7 | 402 |
| ALDH8A1 | ADH6 | P28332 | 400 |
| ALDH8A1 | SDR9C7 | Q8NEX9 | 375 |
| ALDH8A1 | RDH16 | O75452 | 365 |
| ALDH8A1 | ADH4 | P08319 | 365 |
| ALDH8A1 | ADH7 | P40394 | 365 |
| ALDH8A1 | VCPIP1 | Q96JH7 | 356 |
IntAct
4 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| ALDH8A1 | ALDH6A1 | psi-mi:“MI:0914”(association) | 0.530 |
| LRRK2 | SF3B1 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (17): RPUSD2 (Affinity Capture-MS), ALDH6A1 (Affinity Capture-MS), SMC4 (Affinity Capture-MS), MED15 (Affinity Capture-MS), ALDH5A1 (Co-fractionation), ALDH8A1 (Co-fractionation), ALDH8A1 (Co-fractionation), DPP3 (Co-fractionation), ESD (Co-fractionation), NPEPL1 (Co-fractionation), ALDH6A1 (Affinity Capture-MS), RPUSD2 (Affinity Capture-MS), ALDH8A1 (Affinity Capture-RNA), RPUSD2 (Affinity Capture-MS), ALDH6A1 (Affinity Capture-MS)
ESM2 similar proteins: A0R909, A1B4L2, A4IJP9, A4IPB2, A4IPF5, A5F3A7, A6X2G8, A7GKJ4, A9VRG6, B7GFV3, B7H4V1, B7HSW8, B7IUW8, B7JM99, B9J1L9, C1EV77, C3L546, C3PBP4, F8JX40, P0C6D7, P25526, P25553, P37685, P46368, P46369, P62028, P63938, P76149, P9WNY0, P9WNY1, Q29228, Q2KJH9, Q5KYK0, Q5KYR4, Q5L3K8, Q63GS0, Q66I21, Q6HP91, Q81IP0, Q81ZF8
Diamond homologs: A0A7W3RCJ3, A0B2F6, A0PST9, A0QMB9, A0R4Q0, A1KJE8, A1UVS4, A2RWD6, A3MEC6, A3NKP8, A3P6B0, A3PI00, A4JJG5, A4WUY6, A5U390, A5VPA5, A6X2G8, A6ZR27, A9AN00, A9M9H7, B0CKN3, B0RNV0, B1K708, B1Z033, B2SA42, B2TCJ9, B3VMC0, B4EHJ1, B9F3B6, B9KNS6, C0RHQ3, D4GP41, D5E1S7, E1V7V8, O32507, O93344, P05091, P0DOV9, P11884, P12762
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
59 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 1 |
| Likely pathogenic | 0 |
| Uncertain significance | 48 |
| Likely benign | 5 |
| Benign | 2 |
Top pathogenic / likely-pathogenic (1)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1180549 | GRCh37/hg19 6q23.2-24.1(chr6:133810210-140046615)x1 | Pathogenic |
SpliceAI
1096 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 6:134932772:ATAC:A | donor_loss | 1.0000 |
| 6:134932773:TACCT:T | donor_loss | 1.0000 |
| 6:134932774:A:AC | donor_gain | 1.0000 |
| 6:134932774:ACC:A | donor_loss | 1.0000 |
| 6:134932775:C:CC | donor_gain | 1.0000 |
| 6:134933030:CAC:C | acceptor_gain | 1.0000 |
| 6:134939412:CCAG:C | acceptor_gain | 1.0000 |
| 6:134939413:CAGC:C | acceptor_gain | 1.0000 |
| 6:134942405:TCAC:T | donor_loss | 1.0000 |
| 6:134942407:A:AC | donor_gain | 1.0000 |
| 6:134942408:C:CC | donor_gain | 1.0000 |
| 6:134942408:CCGA:C | donor_gain | 1.0000 |
| 6:134942560:TTTCC:T | acceptor_gain | 1.0000 |
| 6:134942561:TTCC:T | acceptor_gain | 1.0000 |
| 6:134942562:TCC:T | acceptor_gain | 1.0000 |
| 6:134942563:CC:C | acceptor_gain | 1.0000 |
| 6:134942563:CCCTG:C | acceptor_gain | 1.0000 |
| 6:134942564:CC:C | acceptor_gain | 1.0000 |
| 6:134942565:C:CC | acceptor_gain | 1.0000 |
| 6:134942565:C:T | acceptor_gain | 1.0000 |
| 6:134942566:T:C | acceptor_loss | 1.0000 |
| 6:134942567:G:C | acceptor_gain | 1.0000 |
| 6:134942567:G:GC | acceptor_gain | 1.0000 |
| 6:134942576:A:T | acceptor_gain | 1.0000 |
| 6:134943813:TCTCA:T | donor_loss | 1.0000 |
| 6:134943814:CTCA:C | donor_loss | 1.0000 |
| 6:134943815:TCACC:T | donor_loss | 1.0000 |
| 6:134943816:CA:C | donor_loss | 1.0000 |
| 6:134943817:A:AC | donor_gain | 1.0000 |
| 6:134943818:C:CC | donor_gain | 1.0000 |
AlphaMissense
3194 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 6:134918700:A:C | F393L | 0.998 |
| 6:134918700:A:T | F393L | 0.998 |
| 6:134918702:A:G | F393L | 0.998 |
| 6:134918508:G:C | F457L | 0.997 |
| 6:134918508:G:T | F457L | 0.997 |
| 6:134918510:A:G | F457L | 0.997 |
| 6:134918549:A:G | W444R | 0.997 |
| 6:134918549:A:T | W444R | 0.997 |
| 6:134929181:A:T | V295D | 0.997 |
| 6:134939393:A:C | N155K | 0.997 |
| 6:134939393:A:T | N155K | 0.997 |
| 6:134932933:C:T | G231E | 0.996 |
| 6:134918527:C:A | R451M | 0.995 |
| 6:134918673:A:C | F402L | 0.995 |
| 6:134918673:A:T | F402L | 0.995 |
| 6:134918675:A:G | F402L | 0.995 |
| 6:134929198:A:C | C289W | 0.995 |
| 6:134932934:C:A | G231W | 0.995 |
| 6:134939324:C:A | K178N | 0.995 |
| 6:134939324:C:G | K178N | 0.995 |
| 6:134939361:G:T | A166D | 0.995 |
| 6:134939398:A:G | W154R | 0.995 |
| 6:134939398:A:T | W154R | 0.995 |
| 6:134939402:G:C | S152R | 0.995 |
| 6:134939402:G:T | S152R | 0.995 |
| 6:134939404:T:G | S152R | 0.995 |
| 6:134918488:C:T | G464E | 0.994 |
| 6:134918506:C:T | G458E | 0.994 |
| 6:134918618:C:G | A421P | 0.994 |
| 6:134929214:C:A | G284V | 0.994 |
dbSNP variants (sampled 300 via entrez): RS1000015663 (6:134928398 T>C), RS1000071204 (6:134928031 A>T), RS1000124967 (6:134941945 C>A,T), RS1000135309 (6:134934629 C>A), RS1000266697 (6:134951652 C>G), RS1000563379 (6:134943372 C>G,T), RS1000585206 (6:134939224 C>T), RS1000773289 (6:134932532 G>T), RS1000921271 (6:134933278 G>A), RS1001009200 (6:134949398 T>C), RS1001022471 (6:134926979 C>A), RS1001025154 (6:134937966 G>A,T), RS1001136626 (6:134943095 T>C), RS1001158644 (6:134927548 A>C), RS1001209556 (6:134927485 CCTTT>C)
Disease associations
OMIM: gene MIM:606467 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
34 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST002097_6 | Coronary artery calcification | 7.000000e-06 |
| GCST006629_57 | Pulse pressure | 1.000000e-13 |
| GCST010796_369 | Electrocardiogram morphology (amplitude at temporal datapoints) | 3.000000e-08 |
| GCST010796_370 | Electrocardiogram morphology (amplitude at temporal datapoints) | 3.000000e-08 |
| GCST010796_371 | Electrocardiogram morphology (amplitude at temporal datapoints) | 3.000000e-09 |
| GCST010796_372 | Electrocardiogram morphology (amplitude at temporal datapoints) | 2.000000e-10 |
| GCST010796_373 | Electrocardiogram morphology (amplitude at temporal datapoints) | 2.000000e-09 |
| GCST010796_374 | Electrocardiogram morphology (amplitude at temporal datapoints) | 2.000000e-08 |
| GCST010796_375 | Electrocardiogram morphology (amplitude at temporal datapoints) | 2.000000e-09 |
| GCST010796_751 | Electrocardiogram morphology (amplitude at temporal datapoints) | 1.000000e-09 |
| GCST010796_752 | Electrocardiogram morphology (amplitude at temporal datapoints) | 3.000000e-08 |
| GCST010796_753 | Electrocardiogram morphology (amplitude at temporal datapoints) | 4.000000e-08 |
| GCST010796_754 | Electrocardiogram morphology (amplitude at temporal datapoints) | 1.000000e-08 |
| GCST010796_755 | Electrocardiogram morphology (amplitude at temporal datapoints) | 9.000000e-09 |
| GCST010796_756 | Electrocardiogram morphology (amplitude at temporal datapoints) | 5.000000e-09 |
| GCST010796_757 | Electrocardiogram morphology (amplitude at temporal datapoints) | 7.000000e-09 |
| GCST010796_758 | Electrocardiogram morphology (amplitude at temporal datapoints) | 4.000000e-08 |
| GCST010796_759 | Electrocardiogram morphology (amplitude at temporal datapoints) | 1.000000e-09 |
| GCST010796_760 | Electrocardiogram morphology (amplitude at temporal datapoints) | 2.000000e-09 |
| GCST010796_761 | Electrocardiogram morphology (amplitude at temporal datapoints) | 2.000000e-08 |
| GCST010796_762 | Electrocardiogram morphology (amplitude at temporal datapoints) | 2.000000e-08 |
| GCST010796_763 | Electrocardiogram morphology (amplitude at temporal datapoints) | 2.000000e-08 |
| GCST010796_764 | Electrocardiogram morphology (amplitude at temporal datapoints) | 6.000000e-09 |
| GCST010796_765 | Electrocardiogram morphology (amplitude at temporal datapoints) | 1.000000e-09 |
| GCST010796_766 | Electrocardiogram morphology (amplitude at temporal datapoints) | 5.000000e-10 |
| GCST010796_767 | Electrocardiogram morphology (amplitude at temporal datapoints) | 3.000000e-08 |
| GCST010796_768 | Electrocardiogram morphology (amplitude at temporal datapoints) | 2.000000e-08 |
| GCST010796_769 | Electrocardiogram morphology (amplitude at temporal datapoints) | 8.000000e-09 |
| GCST010796_770 | Electrocardiogram morphology (amplitude at temporal datapoints) | 8.000000e-09 |
| GCST010796_771 | Electrocardiogram morphology (amplitude at temporal datapoints) | 6.000000e-09 |
EFO canonical traits (3, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004723 | coronary artery calcification |
| EFO:0005763 | pulse pressure measurement |
| EFO:0004327 | electrocardiography |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
57 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Benzo(a)pyrene | affects methylation, decreases expression | 8 |
| Aflatoxin B1 | affects expression, decreases expression, decreases methylation | 5 |
| Valproic Acid | increases expression, decreases expression, affects cotreatment | 4 |
| Cyclosporine | decreases expression | 3 |
| ochratoxin A | increases expression | 2 |
| (+)-JQ1 compound | decreases expression, increases expression | 2 |
| Rotenone | increases expression, decreases expression | 2 |
| Tetrachlorodibenzodioxin | increases expression, affects expression | 2 |
| aristolochic acid I | increases expression | 1 |
| OTX015 | decreases expression | 1 |
| mivebresib | decreases expression | 1 |
| methyleugenol | decreases expression | 1 |
| 6-hydroxy-5-((p- sulfophenyl)azo)-2-naphthalenesulfonic acid disodium salt | affects cotreatment, decreases expression | 1 |
| senecionine | decreases expression | 1 |
| senkirkine | decreases expression | 1 |
| heliotrine | decreases expression | 1 |
| sodium bichromate | increases expression | 1 |
| cypermethrin | decreases expression | 1 |
| sodium arsenite | decreases expression | 1 |
| aflatoxin B2 | increases methylation | 1 |
| racecadotril | decreases expression | 1 |
| perfluorooctane sulfonic acid | decreases expression | 1 |
| pentabromodiphenyl ether | increases expression | 1 |
| CGP 52608 | increases reaction, affects binding | 1 |
| perfluoro-n-nonanoic acid | decreases expression | 1 |
| deguelin | decreases expression | 1 |
| PCB 180 | affects expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, increases expression | 1 |
| 2,2’,4,4’-tetrabromodiphenyl ether | increases expression | 1 |
| dorsomorphin | affects cotreatment, increases expression | 1 |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.