ALG9-IT1

Summary

ALG9-IT1 (ALG9 intronic transcript 1, HGNC:41409) is a long non-coding RNA gene on chromosome 11q23.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:41409
Approved symbol	ALG9-IT1
Name	ALG9 intronic transcript 1
Location	11q23.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000254450
Ensembl biotype	lncRNA
Entrez	100874303
RNAcentral	URS000060D3B6 — lncRNA, 684 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000531305

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000531305 — 2 exons

Exon	Start	End
ENSE00002142605	111817214	111817539
ENSE00002144400	111828855	111829212

Expression profiles

Bgee: expression breadth broad, 93 present calls, max score 78.38.

Top tissues by expression

93 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	78.38	gold quality
bone marrow cell	CL:0002092	73.77	silver quality
colonic epithelium	UBERON:0000397	69.95	silver quality
tonsil	UBERON:0002372	63.80	silver quality
uterine cervix	UBERON:0000002	59.70	silver quality
bone marrow	UBERON:0002371	57.51	gold quality
urinary bladder	UBERON:0001255	55.77	silver quality
calcaneal tendon	UBERON:0003701	55.14	gold quality
corpus callosum	UBERON:0002336	52.43	silver quality
liver	UBERON:0002107	51.95	silver quality
blood	UBERON:0000178	50.54	silver quality
adrenal gland	UBERON:0002369	50.27	gold quality
superior frontal gyrus	UBERON:0002661	49.98	gold quality
islet of Langerhans	UBERON:0000006	49.96	gold quality
endometrium	UBERON:0001295	49.72	silver quality
hindlimb stylopod muscle	UBERON:0004252	49.42	gold quality
placenta	UBERON:0001987	48.63	gold quality
pancreas	UBERON:0001264	48.58	gold quality
right lobe of liver	UBERON:0001114	48.31	silver quality
muscle of leg	UBERON:0001383	47.57	gold quality
kidney	UBERON:0002113	47.34	silver quality
ovary	UBERON:0000992	47.29	silver quality
cortex of kidney	UBERON:0001225	47.28	silver quality
saliva-secreting gland	UBERON:0001044	47.09	gold quality
monocyte	CL:0000576	46.97	silver quality
adult mammalian kidney	UBERON:0000082	46.55	gold quality
adrenal tissue	UBERON:0018303	46.36	silver quality
primary visual cortex	UBERON:0002436	45.98	silver quality
right atrium auricular region	UBERON:0006631	45.87	silver quality
body of pancreas	UBERON:0001150	45.53	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.61

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.