ALMS1
gene geneOn this page
Also known as KIAA0328
Summary
ALMS1 (ALMS1 centrosome and basal body associated protein, HGNC:428) is a protein-coding gene on chromosome 2p13.1, encoding Centrosome-associated protein ALMS1 (Q8TCU4). Involved in PCM1-dependent intracellular transport.
This gene encodes a protein containing a large tandem-repeat domain as well as additional low complexity regions. The encoded protein functions in microtubule organization, particularly in the formation and maintanance of cilia. Mutations in this gene cause Alstrom syndrome. There is a pseudogene for this gene located adjacent in the same region of chromosome 2. Alternative splice variants have been described but their full length nature has not been determined.
Source: NCBI Gene 7840 — RefSeq curated summary.
At a glance
- Gene–disease (curated): Alstrom syndrome (Definitive, ClinGen)
- GWAS associations: 75
- Clinical variants (ClinVar): 7,452 total — 635 pathogenic, 297 likely-pathogenic
- Phenotypes (HPO): 144
- Dosage sensitivity (ClinGen): haploinsufficiency autosomal recessive, triplosensitivity no evidence
- MANE Select transcript:
NM_001378454
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:428 |
| Approved symbol | ALMS1 |
| Name | ALMS1 centrosome and basal body associated protein |
| Location | 2p13.1 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | KIAA0328 |
| Ensembl gene | ENSG00000116127 |
| Ensembl biotype | protein_coding |
| OMIM | 606844 |
| Entrez | 7840 |
Gene structure
Transcript identifiers
Ensembl transcripts: 25 — 9 protein_coding, 7 nonsense_mediated_decay, 6 retained_intron, 3 protein_coding_CDS_not_defined
ENST00000423048, ENST00000464408, ENST00000484298, ENST00000490821, ENST00000613296, ENST00000614410, ENST00000620466, ENST00000651057, ENST00000651434, ENST00000651750, ENST00000652487, ENST00000682565, ENST00000682675, ENST00000682801, ENST00000682859, ENST00000682889, ENST00000683108, ENST00000683147, ENST00000683791, ENST00000684148, ENST00000684197, ENST00000684460, ENST00000684548, ENST00000684590, ENST00000684656
RefSeq mRNA: 2 — MANE Select: NM_001378454
NM_001378454, NM_015120
CCDS: CCDS42697
Canonical transcript exons
ENST00000613296 — 23 exons
| Exon | Start | End |
|---|---|---|
| ENSE00003500474 | 73455162 | 73455295 |
| ENSE00003520693 | 73572262 | 73573424 |
| ENSE00003528865 | 73489634 | 73491498 |
| ENSE00003632752 | 73519775 | 73520016 |
| ENSE00003640307 | 73599401 | 73599521 |
| ENSE00003674030 | 73600678 | 73600881 |
| ENSE00003712451 | 73447960 | 73454067 |
| ENSE00003713961 | 73601195 | 73601436 |
| ENSE00003730907 | 73408622 | 73408747 |
| ENSE00003731228 | 73424430 | 73424902 |
| ENSE00003733666 | 73602185 | 73602368 |
| ENSE00003733994 | 73608475 | 73608574 |
| ENSE00003735498 | 73550267 | 73550437 |
| ENSE00003736009 | 73557220 | 73557354 |
| ENSE00003736150 | 73426453 | 73426553 |
| ENSE00003737922 | 73419123 | 73419318 |
| ENSE00003740088 | 73534824 | 73534949 |
| ENSE00003742555 | 73432198 | 73432291 |
| ENSE00003744697 | 73422857 | 73422974 |
| ENSE00003744901 | 73609568 | 73609916 |
| ENSE00003748191 | 73558972 | 73559142 |
| ENSE00003749420 | 73603241 | 73603304 |
| ENSE00003843259 | 73385836 | 73386192 |
Expression profiles
Bgee: expression breadth ubiquitous, 275 present calls, max score 98.83.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 12.2199 / max 193.3725, expressed in 1725 samples.
FANTOM5 promoters (5 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 20955 | 5.0529 | 1275 |
| 20956 | 4.6086 | 1479 |
| 20953 | 1.5019 | 802 |
| 20957 | 0.6707 | 427 |
| 20954 | 0.3859 | 155 |
Top tissues by expression
288 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| buccal mucosa cell | CL:0002336 | 98.83 | gold quality |
| periodontal ligament | UBERON:0008266 | 98.24 | silver quality |
| cardia of stomach | UBERON:0001162 | 98.07 | gold quality |
| renal medulla | UBERON:0000362 | 98.02 | gold quality |
| ventral tegmental area | UBERON:0002691 | 97.90 | gold quality |
| pylorus | UBERON:0001166 | 97.72 | gold quality |
| inferior vagus X ganglion | UBERON:0005363 | 97.71 | gold quality |
| subthalamic nucleus | UBERON:0001906 | 97.63 | gold quality |
| nipple | UBERON:0002030 | 97.55 | gold quality |
| superior surface of tongue | UBERON:0007371 | 97.44 | silver quality |
| superior vestibular nucleus | UBERON:0007227 | 97.43 | gold quality |
| sperm | CL:0000019 | 97.42 | gold quality |
| lateral globus pallidus | UBERON:0002476 | 97.41 | gold quality |
| trigeminal ganglion | UBERON:0001675 | 97.31 | gold quality |
| endothelial cell | CL:0000115 | 96.83 | gold quality |
| pericardium | UBERON:0002407 | 96.70 | silver quality |
| substantia nigra pars compacta | UBERON:0001965 | 96.52 | silver quality |
| substantia nigra pars reticulata | UBERON:0001966 | 96.39 | gold quality |
| vena cava | UBERON:0004087 | 96.38 | silver quality |
| pharyngeal mucosa | UBERON:0000355 | 96.24 | silver quality |
| lateral nuclear group of thalamus | UBERON:0002736 | 96.17 | silver quality |
| saphenous vein | UBERON:0007318 | 96.11 | gold quality |
| pancreatic ductal cell | CL:0002079 | 96.06 | gold quality |
| medulla oblongata | UBERON:0001896 | 95.89 | gold quality |
| urethra | UBERON:0000057 | 95.79 | gold quality |
| male germ cell | CL:0000015 | 95.75 | gold quality |
| pons | UBERON:0000988 | 95.54 | silver quality |
| dorsal root ganglion | UBERON:0000044 | 95.18 | silver quality |
| tongue | UBERON:0001723 | 94.99 | silver quality |
| penis | UBERON:0000989 | 94.76 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 6.99 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): SP1
miRNA regulators (miRDB)
20 targeting ALMS1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4789-3P | 99.99 | 70.75 | 2484 |
| HSA-MIR-548N | 99.98 | 71.94 | 4170 |
| HSA-MIR-7162-3P | 99.89 | 68.16 | 1682 |
| HSA-MIR-12119 | 99.87 | 68.35 | 1653 |
| HSA-MIR-3121-3P | 99.82 | 71.96 | 3630 |
| HSA-MIR-4799-5P | 99.82 | 70.60 | 2663 |
| HSA-MIR-561-3P | 99.64 | 70.90 | 3647 |
| HSA-MIR-4649-3P | 99.56 | 66.90 | 1783 |
| HSA-MIR-4717-3P | 99.06 | 66.34 | 1072 |
| HSA-MIR-548L | 99.06 | 70.90 | 2560 |
| HSA-MIR-760 | 98.81 | 66.65 | 1392 |
| HSA-MIR-3922-5P | 98.77 | 66.53 | 1059 |
| HSA-MIR-4272 | 98.76 | 68.74 | 1810 |
| HSA-MIR-1972 | 97.67 | 67.38 | 1172 |
| HSA-MIR-3928-3P | 97.61 | 66.53 | 1096 |
| HSA-MIR-526B-5P | 97.41 | 67.99 | 1074 |
| HSA-MIR-4475 | 97.36 | 66.95 | 761 |
| HSA-MIR-3059-3P | 96.71 | 67.08 | 606 |
| HSA-MIR-365A-5P | 94.91 | 63.72 | 471 |
| HSA-MIR-365B-5P | 94.91 | 63.79 | 470 |
Functional genomics
ClinGen dosage: haploinsufficiency 30 (autosomal recessive), triplosensitivity 0 (no evidence). ClinGen Gene Dosage Map
Literature-anchored findings (GeneRIF, showing 40)
- Mutations in ALMS1 cause obesity, type 2 diabetes and neurosensory degeneration in Alstrom syndrome. (PMID:11941369)
- Mutation of ALMS1, a large gene with a tandem repeat encoding 47 amino acids, causes Alstrom syndrome. (PMID:11941370)
- Variation not associated with NIDDM. (PMID:12827243)
- “Alstrom syndrome is an autosomal recessive disease mapped to chromosome 2p12-13. The mutation of the ALMS1 gene causes obesity…and neurosensory degeneration in Alstrom synddrome” p. 297 (PMID:14646408)
- ALSM1 involved in central role for basal body and centrosome dysfunction in the pathogenesis of obesity, insulin resistance, and type 2 diabetes (PMID:15855349)
- Common variations in the ALMS1 gene were not associated with type 2 diabetes in a large study of a white UK population. (PMID:16601972)
- data may have implications for the understanding of the molecular mechanisms of ALMS1 and provides the basis for further investigation of how alternative splicing of ALMS1 contributes to the severity of the disease (PMID:17594715)
- Data show that Alms1 is expressed at higher level in preadipocytes suggesting a role of the gene in the early phase of adipogenesis. Changes in fat cell insulin sensitivity do not imply any effect on Alms1 expression. (PMID:18506366)
- ALMS1 gene is a marker for a progressive autosomal recessive genetic disorders affecting multiple organs. (PMID:19091203)
- By reporting four novel alleles, we use Alstrom disease to exemplify the interesting observation of allelic heterogeneity for a very rare autosomal recessive disorder in a highly inbred population. (PMID:19283855)
- In summary, this work provides the first data on transcription factors regulating general and context-specific transcription of the disease-associated gene ALMS1. (PMID:20381594)
- data suggest centrosomal functions for C10orf90 and KIAA1731 and new centriole-related functions for ALMS1 (PMID:20844083)
- ALMS1-deficient fibroblasts showed a constitutively activated myofibroblast phenotype even if they do not derive from a fibrotic lesion. (PMID:21541333)
- in a set of consanguineous patient families with Leber congenital amaurosis study identified five putative disease-causing mutations, including four novel alleles, in six families; These five mutations are located in four genes, ALMS1, IQCB1, CNGA3, and MYO7A (PMID:21901789)
- Dilated cardiomyopathy (DCM) is one of the major manifestations of ALMS and ranges from sudden-onset infantile congestive heart failure (CHF) and DCM, which often resolves with treatment, to adult-onset cardiomyopathy (PMID:22447358)
- a role for ALMS1 variants in the recycling endosome pathway (PMID:22693585)
- Four mutations in ALMS1-two novel nonsense mutations in one family (p.Y1715X and p.S616X), one two previously described mutations were identified in Spanish families with Alstrom syndrome. (PMID:22876109)
- Data show that mutations in ALMS1 were indicated in 20 of 23 subjects. (PMID:23445176)
- Our observation broadens the clinical spectrum of Alstrom syndrome and suggests that ALMS1 mutations may be considered in patients who initially present with an acute onset of insulin-dependent diabetes (PMID:23652376)
- The purpose of this study was to identify ALMS1 mutations and to assess the clinical features of Chinese patients with Alstrom syndrome. (PMID:24049434)
- Data indicate that representative single-nucleotide polymorphisms of the Alstrom syndrome 1 gene (ALMS1) promoter region were significantly associated with early-onset myocardial infarction (MI) in both Japanese and Korean populations. (PMID:24122612)
- A novel ALMS1 mutation (p.Q2051X) causes Alstrom syndrome in two Japanese brothers but spares their heterozygous parents. (PMID:24319333)
- Our study expands the clinical spectrum associated with ALMS1 mutations and supports complete ALMS1 gene sequencing in children that present with infantile cardiomyopathy and retinopathy. (PMID:24503146)
- Data conclude that deficiency of Alstrom protein impairs postnatal cardiomyocyte cell cycle arrest. (PMID:24595103)
- regulates Notch activation and the accumulation of receptor in late endosomes (PMID:24681783)
- Identification of a homozygous deleterious mutation in the ALMS1 gene as the cause of mitogenic cardiomyopathy in two siblings. (PMID:24972238)
- ALMS has a relatively high incidence in Turkey and the present study shows that the ALMS1 mutations are largely heterogeneous. In addition, 49 variants of uncertain pathogenicity were noted, and four of these were very rare. (PMID:25296579)
- The study represents the most comprehensive mutation analysis in patients with Alstrom Syndrome, identifying the largest number of novel mutations in a single study worldwide. (PMID:25846608)
- In this study, we have characterized the presenting ophthalmic phenotype of young children molecularly confirmed to harbor recessive homozygous ALMS1 mutations but not yet diagnosed with Alstrom syndrome. (PMID:25864795)
- We conclude that two independent mutations in ALMS1 and DYSF cause CRD and muscular dystrophy in the studied consanguineous Israeli Arab family. (PMID:26077327)
- ALMS1 homozygous mutation is associated with Alstrom syndrome. (PMID:26910739)
- Two novel mutations causing phenotypic LCA and Alstrom syndrome in Saudi patients from consanguineous families expand the genotypic spectrum of congenital retinal dystrophies. (PMID:26957854)
- DNA microarray analysis suggested that ALMS1 might be differentially expressed between Hodgkin lymphoma (HL) cells and normal tissues. (PMID:28135309)
- Genetic study included polymerase chain reaction amplification and direct nucleotide sequencing of the entire ALMS1 gene in DNA from seven related Alstrom Syndrome patients. A homozygous single-nucleotide c.10480C>T substitution in exon 16, predicting a p.Q3494* nonsense mutation, was identified in all affected subjects (PMID:28402684)
- Only genetic testing analysing both nonsyndromic retinal disease (RD) genes and syndromic ciliopathy genes by comprehensive panel sequencing can result in the correct diagnosis, genetically and clinically, with important implication for the physical health of the individual. (PMID:29193673)
- After adjusting for age, there were no significant associations of kidney dysfunction with type 2 diabetes mellitus, dyslipidemia, hypertension, cardiomyopathy or portal hypertension suggesting that kidney disease in AS is a primary manifestation of the syndrome due to lack of ALMS1 protein. (PMID:30064963)
- This review presents mechanistic details on the role of ALMS1 in several processes including endosomal trafficking, actin organisation, maintenance of centrosome cohesion and transcription. In line with a more complex picture, multiple isoforms of the protein likely exist and non-centrosomal sites of localisation have been reported. This review outlines the evidence for both ciliary and extra-ciliary functions [review] (PMID:30421101)
- Homozygous mutations in the ALMS1 gene is associated with Non-syndromic retinal dystrophy. (PMID:30488743)
- Phenotypic and mutational spectrum of 21 Chinese patients with Alstrom syndrome. (PMID:31755649)
- Two North American siblings who presented with a mild clinical phenotype of Alstrom syndrome were found to have novel mutations in ALMS1. These two frame-shift mutations segregated with the disease phenotype lending evidence to their pathogenicity. (PMID:31810438)
Cross-species orthologs
2 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| mus_musculus | Alms1 | ENSMUSG00000063810 |
| rattus_norvegicus | Alms1 | ENSRNOG00000022343 |
Paralogs (3): C10orf90 (ENSG00000154493), CEP295 (ENSG00000166004), CEP295NL (ENSG00000178404)
Protein
Protein identifiers
Centrosome-associated protein ALMS1 — Q8TCU4 (reviewed: Q8TCU4)
Alternative names: Alstrom syndrome protein 1
All UniProt accessions (16): Q8TCU4, A0A087WTU9, A0A087WV20, A0A494BZW1, A0A494C003, A0A494C0F1, A0A494C1N9, A0A804HI60, A0A804HIB7, A0A804HJ69, A0A804HJA5, A0A804HJW3, A0A804HKC0, A0A804HKP4, A0A804HL70, H7C1D9
UniProt curated annotations — full annotation on UniProt →
Function. Involved in PCM1-dependent intracellular transport. Required, directly or indirectly, for the localization of NCAPD2 to the proximal ends of centrioles. Required for proper formation and/or maintenance of primary cilia (PC), microtubule-based structures that protrude from the surface of epithelial cells.
Subcellular location. Cytoplasm. Cytoskeleton. Microtubule organizing center. Centrosome. Cilium basal body. Spindle pole.
Tissue specificity. Expressed in all tissues tested including adipose and pancreas. Expressed by beta-cells of the islets in the pancreas (at protein level).
Disease relevance. Alstrom syndrome (ALMS) [MIM:203800] A rare autosomal recessive disorder characterized by progressive cone-rod retinal dystrophy, neurosensory hearing loss, early childhood obesity and diabetes mellitus type 2. Dilated cardiomyopathy, acanthosis nigricans, male hypogonadism, hypothyroidism, developmental delay and hepatic dysfunction can also be associated with the syndrome. The disease is caused by variants affecting the gene represented in this entry.
Similarity. Belongs to the ALMS1 family.
Isoforms (3)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q8TCU4-1 | 1 | yes |
| Q8TCU4-2 | 2 | |
| Q8TCU4-3 | 3 |
RefSeq proteins (2): NP_001365383, NP_055935 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR029299 | ALMS_motif | Domain |
| IPR040972 | ALMS_repeat | Repeat |
Pfam: PF15309, PF18727
UniProt features (99 total): repeat 34, region of interest 21, compositionally biased region 20, sequence variant 10, modified residue 6, sequence conflict 4, splice variant 3, chain 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
No AlphaFold model available for Q8TCU4 — AlphaFold DB does not currently provide models for proteins above ~3000 aa.
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (6): 464, 1189, 2143, 2466, 2632, 2805
Function
Pathways and Gene Ontology
Reactome pathways
16 pathways
| ID | Pathway |
|---|---|
| R-HSA-2565942 | Regulation of PLK1 Activity at G2/M Transition |
| R-HSA-380259 | Loss of Nlp from mitotic centrosomes |
| R-HSA-380270 | Recruitment of mitotic centrosome proteins and complexes |
| R-HSA-380284 | Loss of proteins required for interphase microtubule organization from the centrosome |
| R-HSA-380320 | Recruitment of NuMA to mitotic centrosomes |
| R-HSA-5620912 | Anchoring of the basal body to the plasma membrane |
| R-HSA-8854518 | AURKA Activation by TPX2 |
| R-HSA-1640170 | Cell Cycle |
| R-HSA-1852241 | Organelle biogenesis and maintenance |
| R-HSA-380287 | Centrosome maturation |
| R-HSA-453274 | Mitotic G2-G2/M phases |
| R-HSA-5617833 | Cilium Assembly |
| R-HSA-68877 | Mitotic Prometaphase |
| R-HSA-68886 | M Phase |
| R-HSA-69275 | G2/M Transition |
| R-HSA-69278 | Cell Cycle, Mitotic |
MSigDB gene sets: 462 (showing top):
BROWNE_HCMV_INFECTION_30MIN_DN, BROWNE_HCMV_INFECTION_6HR_DN, GOBP_ACTIN_FILAMENT_BUNDLE_ORGANIZATION, GOBP_REGULATION_OF_MICROTUBULE_BASED_PROCESS, GOBP_VESICLE_MEDIATED_TRANSPORT, GOBP_REGULATION_OF_CELLULAR_COMPONENT_BIOGENESIS, GOCC_MICROTUBULE_ORGANIZING_CENTER, EFC_Q6, GOBP_REGULATION_OF_ACTIN_FILAMENT_BASED_PROCESS, GOBP_REGULATION_OF_CENTRIOLE_REPLICATION, BROWNE_HCMV_INFECTION_48HR_DN, GOBP_CENTRIOLE_ASSEMBLY, BLALOCK_ALZHEIMERS_DISEASE_UP, GOBP_ACTIN_FILAMENT_ORGANIZATION, GOBP_REGULATION_OF_CELL_CYCLE
GO Biological Process (4): endosomal transport (GO:0016197), regulation of centriole replication (GO:0046599), regulation of stress fiber assembly (GO:0051492), positive regulation of cold-induced thermogenesis (GO:0120162)
GO Molecular Function (1): protein binding (GO:0005515)
GO Cellular Component (13): spindle pole (GO:0000922), nucleoplasm (GO:0005654), mitochondrion (GO:0005739), centrosome (GO:0005813), cytosol (GO:0005829), microtubule cytoskeleton (GO:0015630), ciliary basal body (GO:0036064), sperm end piece (GO:0097229), cytoplasm (GO:0005737), centriole (GO:0005814), cytoskeleton (GO:0005856), cilium (GO:0005929), cell projection (GO:0042995)
Reactome top-level categories
Rollup of top-10 pathways:
| Category | Pathways |
|---|---|
| G2/M Transition | 3 |
| Centrosome maturation | 2 |
| Cell Cycle, Mitotic | 2 |
| Loss of proteins required for interphase microtubule organization from the centrosome | 1 |
| Mitotic Prometaphase | 1 |
| Assembly of the 9+0 primary cilium | 1 |
| Organelle biogenesis and maintenance | 1 |
| M Phase | 1 |
| Mitotic G2-G2/M phases | 1 |
| Cell Cycle | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 6 |
| microtubule organizing center | 3 |
| cytoplasm | 2 |
| intracellular membraneless organelle | 2 |
| vesicle-mediated transport | 1 |
| intracellular transport | 1 |
| centriole replication | 1 |
| regulation of centrosome duplication | 1 |
| regulation of organelle assembly | 1 |
| regulation of actin filament bundle assembly | 1 |
| stress fiber assembly | 1 |
| regulation of actomyosin structure organization | 1 |
| positive regulation of multicellular organismal process | 1 |
| cold-induced thermogenesis | 1 |
| regulation of cold-induced thermogenesis | 1 |
| binding | 1 |
| spindle | 1 |
| nuclear lumen | 1 |
| intracellular membrane-bounded organelle | 1 |
| centriole | 1 |
| cytoskeleton | 1 |
| cilium | 1 |
| sperm flagellum | 1 |
| intracellular anatomical structure | 1 |
| intraciliary transport particle | 1 |
| membrane-bounded organelle | 1 |
| plasma membrane bounded cell projection | 1 |
Protein interactions and networks
STRING
2638 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| ALMS1 | XPNPEP3 | Q9NQH7 | 831 |
| ALMS1 | SLC4A5 | Q9BY07 | 824 |
| ALMS1 | CEP290 | O15078 | 773 |
| ALMS1 | DNAAF1 | Q8NEP3 | 765 |
| ALMS1 | BBS7 | Q8IWZ6 | 741 |
| ALMS1 | BBS1 | Q8NFJ9 | 710 |
| ALMS1 | BBS10 | Q8TAM1 | 632 |
| ALMS1 | RHO | P08100 | 625 |
| ALMS1 | BBS2 | Q9BXC9 | 617 |
| ALMS1 | BBS4 | Q96RK4 | 598 |
| ALMS1 | BBS12 | Q6ZW61 | 584 |
| ALMS1 | INS | P01308 | 566 |
| ALMS1 | BBS5 | Q8N3I7 | 559 |
| ALMS1 | ACTN4 | O43707 | 521 |
| ALMS1 | SLC12A1 | Q13621 | 512 |
IntAct
124 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| IKBKG | IKBKB | psi-mi:“MI:0914”(association) | 0.980 |
| CEP97 | CCP110 | psi-mi:“MI:2364”(proximity) | 0.950 |
| ATG13 | ULK1 | psi-mi:“MI:2364”(proximity) | 0.940 |
| MED4 | MED19 | psi-mi:“MI:2364”(proximity) | 0.900 |
| BBS7 | BBS9 | psi-mi:“MI:0914”(association) | 0.860 |
| MLF1 | DNAJB6 | psi-mi:“MI:0914”(association) | 0.750 |
| ORF | EIF3F | psi-mi:“MI:0914”(association) | 0.560 |
| CEP104 | CCDC66 | psi-mi:“MI:2364”(proximity) | 0.540 |
| HSPB8 | VWA8 | psi-mi:“MI:0914”(association) | 0.530 |
| FHL2 | CNOT1 | psi-mi:“MI:0914”(association) | 0.530 |
| DISC1 | AP4M1 | psi-mi:“MI:0914”(association) | 0.530 |
| TFDP3 | E2F3 | psi-mi:“MI:0914”(association) | 0.530 |
| SKP2 | DPYSL4 | psi-mi:“MI:0914”(association) | 0.530 |
| MLF1 | NDC80 | psi-mi:“MI:0914”(association) | 0.530 |
| DYSF | ALMS1 | psi-mi:“MI:0403”(colocalization) | 0.500 |
| DYSF | ALMS1 | psi-mi:“MI:2364”(proximity) | 0.500 |
| POC1A | TXNDC9 | psi-mi:“MI:0914”(association) | 0.480 |
| GSK3B | SEC16A | psi-mi:“MI:2364”(proximity) | 0.420 |
| H2AC4 | ALMS1 | psi-mi:“MI:0915”(physical association) | 0.400 |
| ALMS1 | GTF2IRD1 | psi-mi:“MI:0915”(physical association) | 0.370 |
| MEGF10 | ALMS1 | psi-mi:“MI:0915”(physical association) | 0.370 |
| LACC1 | FLJ10842 | psi-mi:“MI:0914”(association) | 0.350 |
| NS1 | ESYT2 | psi-mi:“MI:0914”(association) | 0.350 |
| NS1 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (214): ALMS1 (Affinity Capture-MS), ALMS1 (Affinity Capture-MS), ALMS1 (Affinity Capture-MS), ALMS1 (Affinity Capture-MS), ALMS1 (Affinity Capture-MS), ALMS1 (Affinity Capture-MS), ALMS1 (Affinity Capture-MS), ALMS1 (Synthetic Growth Defect), ALMS1 (Proximity Label-MS), ALMS1 (Proximity Label-MS), ALMS1 (Proximity Label-MS), ALMS1 (Proximity Label-MS), ALMS1 (Proximity Label-MS), ALMS1 (Proximity Label-MS), ALMS1 (Proximity Label-MS)
ESM2 similar proteins: A0A0P0XCU3, A0A1P8BH59, A1YFC1, A1YGK6, A2T7F2, A6NJ88, B7SY83, F1QU13, F4HXQ7, F4ICX9, F4INW9, F4KCE9, O04251, O81472, O96001, P0CV01, P0CV36, P0CV42, P0CV43, P0CV45, P0CV46, P0CV55, P0CV57, P0CV58, P10322, P16531, P48786, Q0DVU4, Q10P83, Q2EI21, Q3URU2, Q5JY77, Q5QNA6, Q5R7U0, Q5SRN2, Q5U4C1, Q5XPK0, Q6K5K2, Q7T2B3, Q8N3K9
Diamond homologs: D2J0Y4, Q8K4E0, Q8TCU4, Q96M02
SIGNOR signaling
0 interactions.
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 155 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Loss of Nlp from mitotic centrosomes | 9 | 15.0× | 1e-06 |
| Loss of proteins required for interphase microtubule organization from the centrosome | 9 | 15.0× | 1e-06 |
| AURKA Activation by TPX2 | 9 | 14.4× | 1e-06 |
| Regulation of PLK1 Activity at G2/M Transition | 10 | 13.4× | 1e-06 |
| Recruitment of mitotic centrosome proteins and complexes | 9 | 12.9× | 2e-06 |
| Recruitment of NuMA to mitotic centrosomes | 10 | 12.3× | 1e-06 |
| Anchoring of the basal body to the plasma membrane | 10 | 11.9× | 1e-06 |
| Translocation of SLC2A4 (GLUT4) to the plasma membrane | 6 | 9.8× | 2e-03 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| centriole replication | 8 | 43.1× | 5e-09 |
| centrosome duplication | 5 | 34.4× | 8e-05 |
| positive regulation of autophagy | 8 | 12.2× | 8e-05 |
| autophagosome assembly | 7 | 11.6× | 4e-04 |
| intracellular protein localization | 10 | 7.7× | 1e-04 |
| cilium assembly | 10 | 5.4× | 2e-03 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
7452 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 635 |
| Likely pathogenic | 297 |
| Uncertain significance | 3101 |
| Likely benign | 2628 |
| Benign | 88 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1033321 | NM_001378454.1(ALMS1):c.2464C>T (p.Gln822Ter) | Pathogenic |
| 1065120 | NM_001378454.1(ALMS1):c.11668+1G>A | Pathogenic |
| 1068526 | NM_001378454.1(ALMS1):c.7589C>G (p.Ser2530Ter) | Pathogenic |
| 1068901 | NM_001378454.1(ALMS1):c.6528dup (p.Gln2177fs) | Pathogenic |
| 1069142 | NM_001378454.1(ALMS1):c.1910del (p.Pro637fs) | Pathogenic |
| 1069267 | NM_001378454.1(ALMS1):c.1348G>T (p.Glu450Ter) | Pathogenic |
| 1070273 | NC_000002.11:g.(?73659316)(73659429_?)del | Pathogenic |
| 1070274 | NC_000002.11:g.(?73716751)(73747153_?)del | Pathogenic |
| 1070275 | NC_000002.11:g.(?73746892)(73762086_?)del | Pathogenic |
| 1070276 | NC_000002.11:g.(?73777384)(73800561_?)del | Pathogenic |
| 1070448 | NM_001378454.1(ALMS1):c.9442C>T (p.Gln3148Ter) | Pathogenic |
| 1070537 | NM_001378454.1(ALMS1):c.149del (p.Ala50fs) | Pathogenic |
| 1070538 | NM_001378454.1(ALMS1):c.2225_2226dup (p.Val743fs) | Pathogenic |
| 1070819 | NM_001378454.1(ALMS1):c.1447G>T (p.Gly483Ter) | Pathogenic |
| 1071197 | NM_001378454.1(ALMS1):c.870del (p.Ser290fs) | Pathogenic |
| 1071827 | NM_001378454.1(ALMS1):c.211G>T (p.Glu71Ter) | Pathogenic |
| 1071882 | NM_001378454.1(ALMS1):c.4144_4147del (p.Ser1382fs) | Pathogenic |
| 1071883 | NM_001378454.1(ALMS1):c.4210G>T (p.Glu1404Ter) | Pathogenic |
| 1071884 | NM_001378454.1(ALMS1):c.4715C>G (p.Ser1572Ter) | Pathogenic |
| 1071885 | NM_001378454.1(ALMS1):c.8653C>T (p.Arg2885Ter) | Pathogenic |
| 1071886 | NM_001378454.1(ALMS1):c.10558_10561del (p.Asp3520fs) | Pathogenic |
| 1071887 | NM_001378454.1(ALMS1):c.10385-2A>G | Pathogenic |
| 1071888 | NM_001378454.1(ALMS1):c.10750C>T (p.Gln3584Ter) | Pathogenic |
| 1072014 | NM_001378454.1(ALMS1):c.8109del (p.Ser2704fs) | Pathogenic |
| 1072195 | NM_001378454.1(ALMS1):c.2071C>T (p.Gln691Ter) | Pathogenic |
| 1072503 | NM_001378454.1(ALMS1):c.3523dup (p.Thr1175fs) | Pathogenic |
| 1072647 | NM_001378454.1(ALMS1):c.2370_2371del (p.Ala792fs) | Pathogenic |
| 1073232 | NM_001378454.1(ALMS1):c.638dup (p.Leu214fs) | Pathogenic |
| 1073409 | NM_001378454.1(ALMS1):c.7405G>T (p.Glu2469Ter) | Pathogenic |
| 1073658 | NM_001378454.1(ALMS1):c.10619_10622del (p.Thr3540fs) | Pathogenic |
SpliceAI
4633 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 2:73386189:GAAG:G | donor_gain | 1.0000 |
| 2:73386191:AGG:A | donor_loss | 1.0000 |
| 2:73386192:GGT:G | donor_loss | 1.0000 |
| 2:73386193:G:GC | donor_loss | 1.0000 |
| 2:73386194:T:G | donor_loss | 1.0000 |
| 2:73419114:T:G | acceptor_gain | 1.0000 |
| 2:73419121:A:AG | acceptor_gain | 1.0000 |
| 2:73419122:G:A | acceptor_loss | 1.0000 |
| 2:73419122:G:GA | acceptor_gain | 1.0000 |
| 2:73419122:GA:G | acceptor_gain | 1.0000 |
| 2:73419122:GAA:G | acceptor_gain | 1.0000 |
| 2:73419122:GAAA:G | acceptor_gain | 1.0000 |
| 2:73419122:GAAAA:G | acceptor_gain | 1.0000 |
| 2:73419276:G:GG | donor_gain | 1.0000 |
| 2:73419315:C:G | donor_gain | 1.0000 |
| 2:73419315:CTAG:C | donor_loss | 1.0000 |
| 2:73419318:GGT:G | donor_loss | 1.0000 |
| 2:73419319:G:GA | donor_loss | 1.0000 |
| 2:73422855:A:AG | acceptor_gain | 1.0000 |
| 2:73422856:G:GG | acceptor_gain | 1.0000 |
| 2:73422856:GTC:G | acceptor_gain | 1.0000 |
| 2:73424428:AGG:A | acceptor_gain | 1.0000 |
| 2:73424429:GGG:G | acceptor_gain | 1.0000 |
| 2:73424429:GGGGA:G | acceptor_gain | 1.0000 |
| 2:73519768:T:TA | acceptor_gain | 1.0000 |
| 2:73519769:G:A | acceptor_gain | 1.0000 |
| 2:73519773:A:AG | acceptor_gain | 1.0000 |
| 2:73519773:AG:A | acceptor_loss | 1.0000 |
| 2:73519774:G:GA | acceptor_gain | 1.0000 |
| 2:73519774:GA:G | acceptor_gain | 1.0000 |
AlphaMissense
27224 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 2:73573246:T:C | L3790P | 0.996 |
| 2:73602212:T:C | F4048L | 0.996 |
| 2:73602214:C:A | F4048L | 0.996 |
| 2:73602214:C:G | F4048L | 0.996 |
| 2:73573257:T:C | F3794L | 0.995 |
| 2:73573259:T:A | F3794L | 0.995 |
| 2:73573259:T:G | F3794L | 0.995 |
| 2:73608489:T:C | L4126P | 0.994 |
| 2:73602234:G:C | R4055P | 0.993 |
| 2:73608557:G:C | A4149P | 0.993 |
| 2:73602192:T:C | L4041P | 0.992 |
| 2:73602213:T:C | F4048S | 0.992 |
| 2:73572681:T:A | W3602R | 0.991 |
| 2:73572681:T:C | W3602R | 0.991 |
| 2:73602246:T:C | L4059P | 0.991 |
| 2:73608549:G:C | R4146P | 0.991 |
| 2:73572763:T:C | L3629P | 0.990 |
| 2:73602205:A:C | R4045S | 0.990 |
| 2:73602205:A:T | R4045S | 0.990 |
| 2:73601203:T:A | W3961R | 0.989 |
| 2:73601203:T:C | W3961R | 0.989 |
| 2:73453332:G:C | A2269P | 0.988 |
| 2:73602188:T:C | S4040P | 0.988 |
| 2:73602204:G:C | R4045T | 0.988 |
| 2:73572772:T:C | L3632S | 0.987 |
| 2:73572763:T:A | L3629H | 0.986 |
| 2:73602213:T:G | F4048C | 0.986 |
| 2:73602243:G:C | R4058P | 0.986 |
| 2:73534937:A:C | S3299R | 0.985 |
| 2:73534939:C:A | S3299R | 0.985 |
dbSNP variants (sampled 300 via entrez): RS1000010393 (2:73479675 G>C), RS1000011452 (2:73444731 G>C), RS1000017182 (2:73480089 ATTATAC>A), RS1000024872 (2:73513994 TAAAAG>T), RS1000026507 (2:73606505 T>C), RS1000027192 (2:73558261 A>G), RS1000038452 (2:73557955 C>T), RS1000062302 (2:73591630 T>C), RS1000082140 (2:73479478 G>A), RS1000102193 (2:73397888 A>C,G,T), RS1000103545 (2:73438748 CAG>C), RS1000111491 (2:73383892 C>T), RS1000123575 (2:73436247 C>T), RS1000130609 (2:73531945 G>C), RS1000166871 (2:73593466 G>A)
Disease associations
OMIM: gene MIM:606844 | disease phenotypes: MIM:203800, MIM:268000, MIM:204000, MIM:209900, MIM:312080, MIM:108300, MIM:190685, MIM:120970
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| Alstrom syndrome | Definitive | Unknown |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| Alstrom syndrome | Definitive | AR |
Mondo (17): Alstrom syndrome (MONDO:0008763), inherited retinal dystrophy (MONDO:0019118), hearing loss disorder (MONDO:0005365), retinitis pigmentosa (MONDO:0019200), intellectual disability (MONDO:0001071), Leber congenital amaurosis (MONDO:0018998), optic atrophy (MONDO:0003608), Bardet-Biedl syndrome (MONDO:0015229), monogenic diabetes (MONDO:0015967), primary ovarian failure (MONDO:0005387), end stage renal failure (MONDO:0004375), leukodystrophy (MONDO:0019046), cardiomyopathy (MONDO:0004994), Stickler syndrome (MONDO:0019354), Down syndrome (MONDO:0008608)
Orphanet (13): Alström syndrome (Orphanet:64), OBSOLETE: Inherited retinal disorder (Orphanet:71862), Retinitis pigmentosa (Orphanet:791), Leber congenital amaurosis (Orphanet:65), Bardet-Biedl syndrome (Orphanet:110), Rare genetic diabetes mellitus (Orphanet:183625), Leukodystrophy (Orphanet:68356), Rare cardiomyopathy (Orphanet:167848), Stickler syndrome (Orphanet:828), Down syndrome (Orphanet:870), Cone rod dystrophy (Orphanet:1872), NON RARE IN EUROPE: Unexplained intellectual disability (Orphanet:319658), NON RARE IN EUROPE: Primary ovarian failure (Orphanet:619)
HPO phenotypes
144 total (30 of 144 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000009 | Functional abnormality of the bladder |
| HP:0000010 | Recurrent urinary tract infections |
| HP:0000012 | Urinary urgency |
| HP:0000016 | Urinary retention |
| HP:0000020 | Urinary incontinence |
| HP:0000054 | Micropenis |
| HP:0000083 | Renal insufficiency |
| HP:0000099 | Glomerulonephritis |
| HP:0000123 | Nephritis |
| HP:0000147 | Polycystic ovaries |
| HP:0000164 | Abnormality of the dentition |
| HP:0000230 | Gingivitis |
| HP:0000311 | Round face |
| HP:0000388 | Otitis media |
| HP:0000407 | Sensorineural hearing impairment |
| HP:0000408 | Progressive sensorineural hearing impairment |
| HP:0000490 | Deeply set eye |
| HP:0000505 | Visual impairment |
| HP:0000518 | Cataract |
| HP:0000523 | Subcapsular cataract |
| HP:0000543 | Optic disc pallor |
| HP:0000548 | Cone/cone-rod dystrophy |
| HP:0000556 | Retinal dystrophy |
| HP:0000572 | Visual loss |
| HP:0000580 | Pigmentary retinopathy |
| HP:0000613 | Photophobia |
| HP:0000618 | Blindness |
| HP:0000639 | Nystagmus |
| HP:0000729 | Autistic behavior |
GWAS associations
75 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST000649_14 | Chronic kidney disease | 5.000000e-14 |
| GCST000651_1 | Creatinine levels | 1.000000e-15 |
| GCST001220_3 | Metabolite levels | 1.000000e-11 |
| GCST002119_2 | Metabolite levels (X-11787) | 1.000000e-23 |
| GCST002364_1 | Urinary metabolites (H-NMR features) | 6.000000e-17 |
| GCST002364_2 | Urinary metabolites (H-NMR features) | 5.000000e-161 |
| GCST002364_3 | Urinary metabolites (H-NMR features) | 1.000000e-17 |
| GCST003372_11 | Glomerular filtration rate (creatinine) | 8.000000e-20 |
| GCST003401_32 | Glomerular filtration rate in non diabetics (creatinine) | 3.000000e-16 |
| GCST003790_15 | Glomerular filtration rate | 5.000000e-12 |
| GCST003790_33 | Glomerular filtration rate | 3.000000e-08 |
| GCST003993_8 | Menarche (age at onset) | 2.000000e-08 |
| GCST003994_1 | Age at voice drop | 1.000000e-08 |
| GCST005316_333 | Intelligence (MTAG) | 5.000000e-09 |
| GCST005649_7 | Urinary metabolite ratios in chronic kidney disease | 6.000000e-18 |
| GCST005649_8 | Urinary metabolite ratios in chronic kidney disease | 7.000000e-18 |
| GCST005649_9 | Urinary metabolite ratios in chronic kidney disease | 2.000000e-16 |
| GCST005651_2 | Urinary metabolite levels in chronic kidney disease | 1.000000e-11 |
| GCST006249_11 | Serum metabolite levels | 1.000000e-149 |
| GCST006249_110 | Serum metabolite levels | 7.000000e-36 |
| GCST006249_12 | Serum metabolite levels | 9.000000e-149 |
| GCST006249_13 | Serum metabolite levels | 1.000000e-77 |
| GCST006249_35 | Serum metabolite levels | 3.000000e-37 |
| GCST006249_51 | Serum metabolite levels | 9.000000e-22 |
| GCST006249_52 | Serum metabolite levels | 5.000000e-11 |
| GCST006249_55 | Serum metabolite levels | 2.000000e-56 |
| GCST006249_56 | Serum metabolite levels | 1.000000e-54 |
| GCST006249_62 | Serum metabolite levels | 7.000000e-24 |
| GCST006249_77 | Serum metabolite levels | 7.000000e-33 |
| GCST006879_10 | Blood metabolite levels | 6.000000e-09 |
EFO canonical traits (7, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004725 | metabolite measurement |
| EFO:0005276 | hydroxy-leucine measurement |
| EFO:0005116 | urinary metabolite measurement |
| EFO:0004703 | age at menarche |
| EFO:0007888 | age at voice drop |
| EFO:0004337 | intelligence |
| EFO:0004612 | high density lipoprotein cholesterol measurement |
MeSH disease descriptors (13)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D056769 | Alstrom Syndrome | C10.500.300.099; C10.574.500.495.099; C10.668.829.800.300.099; C11.270.684.249; C16.131.077.245.063; C16.131.666.300.099; C16.320.184.063; C16.320.290.684.249; C16.320.400.375.099 |
| D020788 | Bardet-Biedl Syndrome | C10.228.140.617.200; C11.270.684.624; C16.131.077.245.125; C16.320.184.125 |
| D009202 | Cardiomyopathies | C14.280.238 |
| D000071700 | Cone-Rod Dystrophies | C11.270.152; C11.768.585.658.250; C16.320.290.152 |
| D004314 | Down Syndrome | C10.597.606.360.220; C16.131.077.327; C16.131.260.260; C16.320.180.260 |
| D034381 | Hearing Loss | C09.218.458.341; C10.597.751.418.341; C23.888.592.763.393.341 |
| D008607 | Intellectual Disability | C10.597.606.360; C23.888.592.604.646; F01.700.687; F03.625.539 |
| D057130 | Leber Congenital Amaurosis | C11.270.516; C11.768.364 |
| D009404 | Nephrotic Syndrome | C12.050.351.968.419.630.643; C12.200.777.419.630.643; C12.950.419.630.643 |
| D009896 | Optic Atrophy | C10.292.700.225; C11.640.451 |
| D016649 | Primary Ovarian Insufficiency | C12.050.351.500.056.630.750; C12.100.250.056.630.750; C19.391.630.750 |
| D058499 | Retinal Dystrophies | C11.768.585.658 |
| D012174 | Retinitis Pigmentosa | C11.270.684; C11.768.585.658.500; C16.320.290.684 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
50 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Benzo(a)pyrene | decreases expression | 3 |
| Aflatoxin B1 | decreases expression | 3 |
| Tetrachlorodibenzodioxin | decreases expression | 2 |
| Tobacco Smoke Pollution | decreases expression | 2 |
| Tretinoin | decreases expression | 2 |
| aristolochic acid I | decreases expression | 1 |
| FR900359 | decreases phosphorylation | 1 |
| 2,4,6-tribromophenol | decreases expression | 1 |
| methylmercuric chloride | decreases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| bisphenol A | decreases expression | 1 |
| lead acetate | affects cotreatment, increases expression | 1 |
| testosterone undecanoate | affects cotreatment, decreases expression | 1 |
| decabromobiphenyl ether | decreases expression | 1 |
| arsenite | decreases reaction, affects binding | 1 |
| zinc protoporphyrin | increases expression, affects cotreatment | 1 |
| sodium arsenite | affects cotreatment, decreases expression, increases abundance | 1 |
| tetrabromobisphenol A | decreases expression | 1 |
| manganese chloride | decreases expression, increases abundance, affects cotreatment | 1 |
| tamibarotene | decreases expression | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| abrine | decreases expression | 1 |
| 2,2’,4,4’-tetrabromodiphenyl ether | decreases expression | 1 |
| pentabrominated diphenyl ether 100 | decreases expression | 1 |
| hexabrominated diphenyl ether 153 | increases expression | 1 |
| jinfukang | decreases expression, increases reaction | 1 |
| Sunitinib | decreases expression | 1 |
| Air Pollutants | decreases expression, increases abundance | 1 |
| Arsenic | affects cotreatment, decreases expression, increases abundance | 1 |
| Caffeine | affects phosphorylation | 1 |
Cellosaurus cell lines
2 cell lines: 2 induced pluripotent stem cell
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_A1DF | FDCHi003-A | Induced pluripotent stem cell | Male |
| CVCL_A1DG | FDCHi003-A-1 | Induced pluripotent stem cell | Male |
Clinical trials (associated diseases)
300 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00205881 | PHASE4 | COMPLETED | Bilateral Benefit in Adult Users of the HiRes 90K Bionic Ear System |
| NCT00331539 | PHASE4 | UNKNOWN | Relationship Between Auto NRT and Behavioural T & C Levels With the Nucleus Freedom Cochlear Implant |
| NCT00424307 | PHASE4 | UNKNOWN | Bilateral Cochlear Implant Benefit in Young Children |
| NCT00765635 | PHASE4 | COMPLETED | Chlorobutanol, Potassium Carbonate, and Irrigation in Cerumen Removal |
| NCT03321006 | PHASE4 | COMPLETED | Treating Hearing Loss to Improve Mood and Cognition in Older Adults |
| NCT03746522 | PHASE3 | COMPLETED | Setmelanotide (RM-493), Melanocortin-4 Receptor (MC4R) Agonist, in Bardet-Biedl Syndrome (BBS) and Alström Syndrome (AS) Participants With Moderate to Severe Obesity |
| NCT04224207 | PHASE3 | COMPLETED | Management of Retinitis Pigmentosa by Mesenchymal Stem Cells by Wharton’s Jelly Derived Mesenchymal Stem Cells |
| NCT07082855 | PHASE3 | NOT_YET_RECRUITING | A Multicenter, Randomized, Double-Blind, Controlled Clinical Study of Minocycline for the Treatment of Retinitis Pigmentosa |
| NCT01499901 | PHASE3 | WITHDRAWN | Comparison of the Bilateral Sequential and Simultaneous Cochlear Implantation in the Deaf Children |
| NCT02561091 | PHASE3 | COMPLETED | AM-111 in the Treatment of Acute Inner Ear Hearing Loss |
| NCT03331627 | PHASE3 | COMPLETED | Safety and Efficacy of STR001-IT and STR001-ER in Patients With SSHL |
| NCT05532657 | PHASE3 | ACTIVE_NOT_RECRUITING | ACHIEVE Brain Health Follow-Up Study |
| NCT03763227 | PHASE2 | COMPLETED | Intravitreal Ranibizumab (Lucentis®) in the Treatment of Non-leaking Macular Cysts in Retinal Dystrophy |
| NCT04068207 | PHASE2 | COMPLETED | Minocycline Treatment in Retinitis Pigmentosa |
| NCT04945772 | PHASE2 | COMPLETED | Efficacy and Safety of MCO-010 Optogenetic Therapy in Adults With Retinitis Pigmentosa [RESTORE] |
| NCT00013455 | PHASE2 | COMPLETED | Quantifying Auditory Perceptual Learning Following Hearing Aid Fitting |
| NCT00323427 | PHASE2 | COMPLETED | Clinical Trial of the Living Well With Hearing Loss Workshop |
| NCT00552786 | PHASE2 | COMPLETED | Antioxidation Medication for Noise-induced Hearing Loss |
| NCT00802425 | PHASE2 | COMPLETED | Efficacy of AM-111 in Patients With Acute Sensorineural Hearing Loss |
| NCT01139281 | PHASE2 | COMPLETED | The Protective Effect of Ginkgo Biloba Extract on Cisplatin-induced Ototoxicity in Humans |
| NCT01451853 | PHASE2 | UNKNOWN | SPI-1005 for Prevention and Treatment of Chemotherapy Induced Hearing Loss |
| NCT01588925 | PHASE2 | COMPLETED | Hearing Preservation Using Dexamethasone and Hyaluronic Acid for Cochlear Implantation |
| NCT01773278 | PHASE2 | RECRUITING | Cholesterol and Antioxidant Treatment in Patients With Smith-Lemli-Opitz Syndrome (SLOS) |
| NCT02832128 | PHASE2 | COMPLETED | Evaluating Possible Improvement in Speech and Hearing Tests After 28 Days of Dosing of the Study Drug AUT00063 Compared to Placebo (QuicKfire) |
| NCT04915183 | PHASE2 | RECRUITING | Atorvastatin to Reduce Cisplatin-Induced Hearing Loss Among Individuals With Head and Neck Cancer |
| NCT05258773 | PHASE2 | COMPLETED | Evaluation of the Presence of SENS-401 in the Perilymph |
| NCT06340633 | PHASE2 | RECRUITING | SPI-1005 in Adults Receiving Cochlear Implant |
| NCT05902962 | PHASE1 | COMPLETED | SAD of IVT VP-001 in PRPF31 Mutation-Associated Retinal Dystrophy Subjects |
| NCT06319872 | PHASE1 | RECRUITING | The Effects of Disulfiram (Antabuse®) on Visual Acuity in Patients With Retinal Degeneration |
| NCT06455826 | PHASE1 | COMPLETED | MAD of IVT VP-001 in PRPF31 Mutation-Associated Retinal Dystrophy Subjects (Wallaby) |
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Related Atlas pages
- Associated diseases: Alstrom syndrome
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): Alstrom syndrome, Bardet-Biedl syndrome, cone-rod dystrophy, Down syndrome, end stage renal failure, Leber congenital amaurosis, leukodystrophy, monogenic diabetes, nephrotic syndrome, retinitis pigmentosa, Stickler syndrome