ALS2
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Summary
ALS2 (alsin Rho guanine nucleotide exchange factor ALS2, HGNC:443) is a protein-coding gene on chromosome 2q33.1, encoding Alsin (Q96Q42). May act as a GTPase regulator.
The protein encoded by this gene contains an ATS1/RCC1-like domain, a RhoGEF domain, and a vacuolar protein sorting 9 (VPS9) domain, all of which are guanine-nucleotide exchange factors that activate members of the Ras superfamily of GTPases. The protein functions as a guanine nucleotide exchange factor for the small GTPase RAB5. The protein localizes with RAB5 on early endosomal compartments, and functions as a modulator for endosomal dynamics. Mutations in this gene result in several forms of juvenile lateral sclerosis and infantile-onset ascending spastic paralysis. Multiple transcript variants encoding different isoforms have been found for this gene.
Source: NCBI Gene 57679 — RefSeq curated summary.
At a glance
- Gene–disease (curated): ALS2-related motor neuron disease (Definitive, ClinGen) — +4 more curated relationships
- GWAS associations: 2
- Clinical variants (ClinVar): 1,200 total — 72 pathogenic, 39 likely-pathogenic
- Phenotypes (HPO): 98
- Dosage sensitivity (ClinGen): haploinsufficiency autosomal recessive, triplosensitivity no evidence
- MANE Select transcript:
NM_020919
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:443 |
| Approved symbol | ALS2 |
| Name | alsin Rho guanine nucleotide exchange factor ALS2 |
| Location | 2q33.1 |
| Locus type | gene with protein product |
| Status | Approved |
| Ensembl gene | ENSG00000003393 |
| Ensembl biotype | protein_coding |
| OMIM | 606352 |
| Entrez | 57679 |
Gene structure
Transcript identifiers
Ensembl transcripts: 79 — 29 protein_coding, 21 retained_intron, 19 nonsense_mediated_decay, 10 protein_coding_CDS_not_defined
ENST00000264276, ENST00000409632, ENST00000410052, ENST00000439495, ENST00000462747, ENST00000467448, ENST00000482789, ENST00000482891, ENST00000483703, ENST00000489440, ENST00000494017, ENST00000496244, ENST00000679409, ENST00000679416, ENST00000679427, ENST00000679435, ENST00000679503, ENST00000679516, ENST00000679549, ENST00000679550, ENST00000679618, ENST00000679630, ENST00000679635, ENST00000679686, ENST00000679701, ENST00000679728, ENST00000679916, ENST00000679939, ENST00000679949, ENST00000680000, ENST00000680135, ENST00000680149, ENST00000680163, ENST00000680174, ENST00000680188, ENST00000680236, ENST00000680287, ENST00000680404, ENST00000680441, ENST00000680497, ENST00000680508, ENST00000680569, ENST00000680630, ENST00000680634, ENST00000680644, ENST00000680722, ENST00000680723, ENST00000680726, ENST00000680737, ENST00000680759, ENST00000680814, ENST00000680819, ENST00000680828, ENST00000680861, ENST00000680927, ENST00000680939, ENST00000681144, ENST00000681152, ENST00000681250, ENST00000681256, ENST00000681279, ENST00000681303, ENST00000681307, ENST00000681312, ENST00000681378, ENST00000681461, ENST00000681495, ENST00000681558, ENST00000681619, ENST00000681663, ENST00000681692, ENST00000681716, ENST00000681758, ENST00000681768, ENST00000681808, ENST00000905985, ENST00000925368, ENST00000942930, ENST00000942931
RefSeq mRNA: 3 — MANE Select: NM_020919
NM_001135745, NM_001410975, NM_020919
CCDS: CCDS42800, CCDS46492, CCDS92925
Canonical transcript exons
ENST00000264276 — 34 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000934613 | 201700267 | 201701889 |
| ENSE00001932788 | 201780877 | 201780933 |
| ENSE00003469997 | 201723043 | 201723120 |
| ENSE00003498649 | 201768866 | 201768945 |
| ENSE00003505470 | 201738670 | 201738735 |
| ENSE00003513641 | 201727212 | 201727278 |
| ENSE00003525905 | 201715672 | 201715839 |
| ENSE00003526371 | 201726664 | 201726866 |
| ENSE00003537621 | 201753146 | 201753242 |
| ENSE00003546342 | 201710991 | 201711108 |
| ENSE00003553880 | 201705416 | 201705461 |
| ENSE00003554077 | 201718077 | 201718210 |
| ENSE00003567371 | 201704122 | 201704218 |
| ENSE00003569651 | 201725356 | 201725454 |
| ENSE00003595325 | 201724295 | 201724459 |
| ENSE00003600534 | 201704454 | 201704603 |
| ENSE00003602119 | 201706846 | 201707022 |
| ENSE00003608497 | 201729052 | 201729183 |
| ENSE00003615171 | 201757402 | 201757759 |
| ENSE00003617570 | 201754503 | 201754671 |
| ENSE00003619728 | 201767229 | 201767383 |
| ENSE00003629440 | 201760881 | 201761818 |
| ENSE00003631470 | 201746566 | 201746748 |
| ENSE00003636929 | 201727705 | 201727775 |
| ENSE00003644854 | 201749712 | 201749789 |
| ENSE00003653809 | 201707869 | 201707991 |
| ENSE00003656488 | 201723330 | 201723441 |
| ENSE00003659416 | 201728512 | 201728640 |
| ENSE00003661001 | 201741674 | 201741854 |
| ENSE00003662379 | 201744258 | 201744429 |
| ENSE00003667861 | 201709881 | 201710038 |
| ENSE00003667933 | 201726484 | 201726549 |
| ENSE00003673437 | 201733276 | 201733438 |
| ENSE00003692637 | 201705139 | 201705200 |
Expression profiles
Bgee: expression breadth ubiquitous, 254 present calls, max score 96.76.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 15.3030 / max 372.8987, expressed in 1785 samples.
FANTOM5 promoters (7 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 33262 | 14.5581 | 1784 |
| 33263 | 0.2087 | 94 |
| 33264 | 0.1752 | 63 |
| 33265 | 0.1660 | 62 |
| 33259 | 0.1478 | 34 |
| 33260 | 0.0264 | 3 |
| 33261 | 0.0207 | 7 |
Top tissues by expression
260 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| cerebellum | UBERON:0002037 | 96.76 | gold quality |
| cerebellar cortex | UBERON:0002129 | 96.72 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 96.71 | gold quality |
| right hemisphere of cerebellum | UBERON:0014890 | 96.21 | gold quality |
| cerebellar vermis | UBERON:0004720 | 95.08 | gold quality |
| tibialis anterior | UBERON:0001385 | 93.64 | gold quality |
| left ventricle myocardium | UBERON:0006566 | 93.12 | gold quality |
| cardiac muscle of right atrium | UBERON:0003379 | 90.53 | gold quality |
| deltoid | UBERON:0001476 | 90.36 | gold quality |
| sural nerve | UBERON:0015488 | 90.26 | gold quality |
| middle temporal gyrus | UBERON:0002771 | 89.48 | gold quality |
| cortical plate | UBERON:0005343 | 89.18 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 88.95 | gold quality |
| myocardium | UBERON:0002349 | 88.89 | gold quality |
| calcaneal tendon | UBERON:0003701 | 88.51 | gold quality |
| Brodmann (1909) area 46 | UBERON:0006483 | 87.60 | gold quality |
| adrenal tissue | UBERON:0018303 | 87.44 | gold quality |
| oviduct epithelium | UBERON:0004804 | 87.37 | gold quality |
| ileal mucosa | UBERON:0000331 | 86.95 | gold quality |
| skeletal muscle tissue of rectus abdominis | UBERON:0004511 | 86.56 | gold quality |
| biceps brachii | UBERON:0001507 | 86.41 | gold quality |
| secondary oocyte | CL:0000655 | 86.32 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 86.31 | gold quality |
| islet of Langerhans | UBERON:0000006 | 86.20 | gold quality |
| skeletal muscle tissue | UBERON:0001134 | 86.03 | gold quality |
| ventricular zone | UBERON:0003053 | 85.88 | gold quality |
| colonic epithelium | UBERON:0000397 | 85.78 | gold quality |
| muscle tissue | UBERON:0002385 | 85.71 | gold quality |
| postcentral gyrus | UBERON:0002581 | 85.71 | gold quality |
| skeletal muscle tissue of biceps brachii | UBERON:0004502 | 85.59 | gold quality |
Single-cell (SCXA)
Detected in 4 experiment(s), a significant marker in 4.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-CURD-112 | yes | 12.88 |
| E-MTAB-9067 | yes | 11.78 |
| E-ANND-3 | yes | 10.65 |
| E-MTAB-9801 | yes | 6.01 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): ATF1, NFE2L2
miRNA regulators (miRDB)
98 targeting ALS2, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4476 | 100.00 | 68.18 | 2030 |
| HSA-MIR-6876-5P | 100.00 | 67.68 | 2126 |
| HSA-MIR-340-5P | 100.00 | 72.50 | 4437 |
| HSA-MIR-4795-3P | 100.00 | 74.62 | 4024 |
| HSA-MIR-513A-5P | 100.00 | 69.77 | 2465 |
| HSA-MIR-3064-3P | 100.00 | 70.09 | 1254 |
| HSA-MIR-607 | 99.97 | 73.62 | 5593 |
| HSA-MIR-507 | 99.97 | 70.11 | 1915 |
| HSA-MIR-548AT-5P | 99.96 | 70.83 | 2666 |
| HSA-MIR-559 | 99.95 | 72.28 | 3609 |
| HSA-MIR-144-3P | 99.94 | 73.98 | 2698 |
| HSA-MIR-141-3P | 99.94 | 72.79 | 2421 |
| HSA-MIR-200A-3P | 99.94 | 72.68 | 2420 |
| HSA-MIR-9983-3P | 99.94 | 71.48 | 3631 |
| HSA-MIR-335-3P | 99.93 | 73.36 | 4958 |
| HSA-MIR-145-5P | 99.92 | 71.13 | 1836 |
| HSA-MIR-5195-3P | 99.92 | 70.92 | 1877 |
| HSA-MIR-1305 | 99.91 | 71.43 | 3443 |
| HSA-MIR-1297 | 99.91 | 73.41 | 3162 |
| HSA-MIR-3671 | 99.90 | 73.04 | 3897 |
| HSA-MIR-4302 | 99.89 | 67.94 | 1187 |
| HSA-MIR-548E-5P | 99.89 | 72.73 | 4486 |
| HSA-MIR-129-5P | 99.88 | 70.26 | 3273 |
| HSA-MIR-605-3P | 99.88 | 69.22 | 1833 |
| HSA-MIR-5582-3P | 99.86 | 72.48 | 4221 |
| HSA-MIR-548AR-3P | 99.85 | 71.26 | 3889 |
| HSA-MIR-3663-3P | 99.84 | 70.39 | 798 |
| HSA-MIR-4659A-3P | 99.80 | 72.62 | 4248 |
| HSA-MIR-4659B-3P | 99.80 | 72.62 | 4248 |
| HSA-MIR-323A-3P | 99.79 | 70.30 | 1739 |
Functional genomics
ClinGen dosage: haploinsufficiency 30 (autosomal recessive), triplosensitivity 0 (no evidence). ClinGen Gene Dosage Map
Literature-anchored findings (GeneRIF, showing 40)
- causative genes for familial amyotrophic lateral sclerosis (PMID:12138710)
- Infantile-onset ascending hereditary spastic paralysis is associated with mutations in the alsin gene. (PMID:12145748)
- 16 patients from 11 unrelated families were studied with a phenotype of infantile ascending hereditary spastic paralysis (IAHSP); Alsin mutations were found in 4 of the 10 families, whereas haplotype analysis excluded the ALS2 locus in one family (PMID:12601111)
- Perturbation of endosomal dynamics caused by loss of ALS2 rab5GEF activity might underlie neuronal dysfunction and degeneration. (PMID:12837691)
- deletion mutations in ALS2 gene detected in ALS2 patients seem to be uncommon in Japanese AR-ALS, and that SNPs in uncoding regions might possibly be relevant to predisposition to ALS. (PMID:12866199)
- A nonsense mutation in alsin was found in infantile spastic paraplegia. Full-length alsin is probably required for the proper development and/or functioning of upper motor neurons. (PMID:12919135)
- Mutations in the ALS2 gene linked to early-onset motor neuron disease uniformly produce loss of activity through decreased protein stability of this endosomal protein. (PMID:14668431)
- Mutations of ALS2 are not a common cause of ALS. (PMID:14676054)
- Expression of alsin LF, but not alsin short form, protected motor neuronal cells from toxicity induced by mutants of the Cu/Zn-superoxide dismutase (SOD1) gene, which cause autosomal dominant ALS (PMID:14970233)
- oligomerization of the ALS2 protein is one of the fundamental features for its physiological function involving endosome dynamics in vivo (PMID:15247254)
- A peptide derived from the ALS2 protein is selectively localized to the somatodendritic compartment of motor neurons in human spinal cord. (PMID:15371724)
- These results suggest that amyotrophic lateral sclerosis 2 C-terminal like (ALS2CL), a novel ALS2 homologue, modulates Rab5-mediated endosome dynamics in HeLa cells. (PMID:15388334)
- Rac1, PI3 kinase, and Akt3 have roles in an anti-apoptotic pathway triggered by ALS2 that antagonizes SOD1 mutant-induced motoneuronal cell death (PMID:15579468)
- ALS2/Alsin has a role in regulating Rac-PAK signaling and neurite outgrowth (PMID:16049005)
- colocalization of Alsin with the centrosomal markers gamma-tubulin and A kinase anchoring protein. (PMID:16085057)
- ALS2 mutations are not implicated in the pathogenesis of adult-onset primary lateral sclerosis. (PMID:17698795)
- Autosomal recessive mutations in the ALS2 gene lead to a clinical spectrum of motor dysfunction including juvenile onset amyotrophic lateral sclerosis. [REVIEW] (PMID:17955197)
- mutations in ALS2 also need to be considered in patients from northwestern Europe with early-onset spastic paralysis and amyotrophic or primary lateral sclerosis. (PMID:18523452)
- Results suggest at least four recombination events in the ALS2 gene during maternal meiosis followed by a meiosis I error and postzygotic trisomy rescue or gamete complementation, in a patient with infantile-onset ascending spastic paralysis. (PMID:18810511)
- A structural model for the N-terminal 690-residue region of alsin through comparative modelling based on regulator of chromosome condensation 1 was created. (PMID:19023603)
- This novel ALS2 splice-site mutation is causing the loss of exon 18 in the transcript which results in a frameshift after exon 17. (PMID:19122027)
- these results suggest that Als2 is a binding partner of Uxt and Als2/Uxt interaction could be important for the activation of Nf-kappaB pathway. (PMID:21907703)
- ALS2 sequencing revealed two heterozygous mutations: the missense variant c.299 G>T, leading to the replacement of a serine with an isoleucine (p.S100I), and the splicing variant c.2580-2 A>G in brothers with juvenile amyotrophic lateral sclerosis. (PMID:23282280)
- The ALS2 mutation c.2761C>T leading to infantile-onset hereditary spastic paraplegia resides in the pleckstrin domain, which is involved in the overall neuronal development or maintenance. (PMID:24315819)
- The ALS2 gene should be screened for mutations in patients who present with generalized dystonia and cerebellar signs. (PMID:24562058)
- Data indicate a splice-site mutation of the amyotrophic lateral sclerosis 2 (juvenile) protein (ALS2) in four children of a consanguineous family with infantile-onset ascending hereditary spastic paraplegia. (PMID:24704789)
- novel compound heterozygous ALS2 deletion mutations were identified in two siblings with infantile ascending hereditary spastic paraplegia. (PMID:25433428)
- We identified a novel homozygous splice-site mutation (c.3512+1G>A) in the ALS2 gene (NM_020919.3) encoding alsin that segregated with the disease in this family (PMID:25474699)
- This study identified two novel ALS2 mutations in two Pakistani families with infantile-onset ascending hereditary spastic paraplegia cosegregating with the disease. (PMID:26751646)
- We established a genetic diagnosis in six families with autosomal recessive HSP (SPG11 in three families and TFG/SPG57, SACS and ALS2 in one family each). A heterozygous mutation in a gene involved in an autosomal dominant HSP (ATL1/SPG3A) was also identified in one additional family (PMID:27601211)
- Nonsense mutation in ALS2 gene is associated with severe and progressive infantile onset of spastic paralysis. (PMID:28502191)
- These findings define a novel pathway whereby Alsin catalyzes the assembly of the Rab5 endocytic machinery on mitochondria. Defects in stress-sensing by endosomes could be crucial for mitochondrial quality control during the onset of amyotrophic lateral sclerosis. (PMID:29469808)
- This study identified a novel ALS2 pathogenic founder variant in Iran that further adds to the allelic heterogeneity of infantile-onset ascending hereditary spastic paralysis. (PMID:30128655)
- Disorganized higher structures of ALS2 variants impaired endosomal localization and the stability, leading to loss of the ALS2 function. (PMID:30224357)
- ALS2, the small GTPase Rab17-interacting protein, regulates maturation and sorting of Rab17-associated endosomes. (PMID:31959474)
- Genotype-phenotype correlation in seven motor neuron disease families with novel ALS2 mutations. (PMID:33155358)
- ALS2-related disorders in Spanish children. (PMID:33409823)
- The N-terminal intrinsically disordered region mediates intracellular localization and self-oligomerization of ALS2. (PMID:34243065)
- Tumor-derived hypoxic small extracellular vesicles promote endothelial cell migration and tube formation via ALS2/Rab5/beta-catenin signaling. (PMID:38847490)
- Conformational Dynamics and Molecular Characterization of Alsin MORN Monomer and Dimeric Assemblies. (PMID:39023312)
Cross-species orthologs
8 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | als2a | ENSDARG00000075111 |
| danio_rerio | als2b | ENSDARG00000076924 |
| mus_musculus | Als2 | ENSMUSG00000026024 |
| rattus_norvegicus | Als2 | ENSRNOG00000023280 |
| drosophila_melanogaster | ca | FBGN0000247 |
| drosophila_melanogaster | Rcc1 | FBGN0002638 |
| drosophila_melanogaster | CG7420 | FBGN0031344 |
| caenorhabditis_elegans | WBGENE00004304 |
Paralogs (9): HERC1 (ENSG00000103657), SERGEF (ENSG00000129158), RCBTB1 (ENSG00000136144), RCBTB2 (ENSG00000136161), RPGR (ENSG00000156313), RCCD1 (ENSG00000166965), RCC2 (ENSG00000179051), RCC1 (ENSG00000180198), RCC1L (ENSG00000274523)
Protein
Protein identifiers
Alsin — Q96Q42 (reviewed: Q96Q42)
Alternative names: Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 6 protein, Amyotrophic lateral sclerosis 2 protein
All UniProt accessions (32): Q96Q42, A0A0S2Z5I4, A0A0S2Z5Q7, A0A7P0T813, A0A7P0T8F3, A0A7P0T8P3, A0A7P0T8R1, A0A7P0T8T2, A0A7P0T8W6, A0A7P0T951, A0A7P0T958, A0A7P0T976, A0A7P0T980, A0A7P0T993, A0A7P0T9K3, A0A7P0T9P3, A0A7P0T9R1, A0A7P0T9U5, A0A7P0T9V4, A0A7P0TAC4, A0A7P0TAH8, A0A7P0TAM1, A0A7P0TBB0, A0A7P0TBK0, A0A7P0Z499, A0A7P0Z4F3, A0A7P0Z4I4, A0A7P0Z4J9, A0A7P0Z4M6, H0Y696, J3KQ33, J3KQ43
UniProt curated annotations — full annotation on UniProt →
Function. May act as a GTPase regulator. Controls survival and growth of spinal motoneurons.
Subunit / interactions. Forms a heteromeric complex with ALS2CL. Interacts with ALS2CL.
Disease relevance. Amyotrophic lateral sclerosis 2 (ALS2) [MIM:205100] A neurodegenerative disorder affecting upper motor neurons in the brain and lower motor neurons in the brain stem and spinal cord, resulting in fatal paralysis. Sensory abnormalities are absent. The pathologic hallmarks of the disease include pallor of the corticospinal tract due to loss of motor neurons, presence of ubiquitin-positive inclusions within surviving motor neurons, and deposition of pathologic aggregates. The etiology of amyotrophic lateral sclerosis is likely to be multifactorial, involving both genetic and environmental factors. The disease is inherited in 5-10% of the cases. The disease is caused by variants affecting the gene represented in this entry. Juvenile primary lateral sclerosis (JPLS) [MIM:606353] A neurodegenerative disorder which is closely related to but clinically distinct from amyotrophic lateral sclerosis. It is a progressive paralytic disorder which results from dysfunction of the upper motor neurons while the lower neurons are unaffected. The disease is caused by variants affecting the gene represented in this entry. Infantile-onset ascending spastic paralysis (IAHSP) [MIM:607225] Characterized by progressive spasticity and weakness of limbs. The disease is caused by variants affecting the gene represented in this entry.
Isoforms (3)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q96Q42-1 | 1 | yes |
| Q96Q42-2 | 2 | |
| Q96Q42-3 | 3 |
RefSeq proteins (3): NP_001129217, NP_001397904, NP_065970* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000219 | DH_dom | Domain |
| IPR000408 | Reg_chr_condens | Repeat |
| IPR003123 | VPS9 | Domain |
| IPR003409 | MORN | Repeat |
| IPR009091 | RCC1/BLIP-II | Homologous_superfamily |
| IPR011993 | PH-like_dom_sf | Homologous_superfamily |
| IPR035899 | DBL_dom_sf | Homologous_superfamily |
| IPR037191 | VPS9_dom_sf | Homologous_superfamily |
| IPR051984 | Alsin | Family |
| IPR057248 | Alsin-like_PH | Domain |
| IPR059093 | HA_Alsin | Domain |
Pfam: PF00415, PF02204, PF02493, PF25383, PF25582, PF26202
UniProt features (39 total): repeat 13, modified residue 7, sequence variant 6, splice variant 4, domain 3, compositionally biased region 2, sequence conflict 2, chain 1, region of interest 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q96Q42-F1 | 74.69 | 0.40 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (7): 465, 466, 483, 492, 510, 533, 1335
Function
Pathways and Gene Ontology
Reactome pathways
9 pathways
| ID | Pathway |
|---|---|
| R-HSA-8876198 | RAB GEFs exchange GTP for GDP on RABs |
| R-HSA-9013149 | RAC1 GTPase cycle |
| R-HSA-162582 | Signal Transduction |
| R-HSA-194315 | Signaling by Rho GTPases |
| R-HSA-199991 | Membrane Trafficking |
| R-HSA-5653656 | Vesicle-mediated transport |
| R-HSA-9007101 | Rab regulation of trafficking |
| R-HSA-9012999 | RHO GTPase cycle |
| R-HSA-9716542 | Signaling by Rho GTPases, Miro GTPases and RHOBTB3 |
MSigDB gene sets: 434 (showing top):
GOBP_NEUROMUSCULAR_JUNCTION_DEVELOPMENT, GOBP_LYSOSOMAL_TRANSPORT, GOBP_BEHAVIOR, GOBP_ENDOSOME_ORGANIZATION, GOBP_REGULATION_OF_PHOSPHORYLATION, GOBP_VESICLE_ORGANIZATION, GRAESSMANN_RESPONSE_TO_MC_AND_DOXORUBICIN_UP, GOBP_REGULATION_OF_GTPASE_ACTIVITY, GOBP_REGULATION_OF_SMALL_GTPASE_MEDIATED_SIGNAL_TRANSDUCTION, GOBP_VACUOLAR_TRANSPORT, GOBP_REGULATION_OF_TRANSFERASE_ACTIVITY, GOBP_NEUROGENESIS, GOBP_VESICLE_MEDIATED_TRANSPORT, GOCC_RUFFLE, REACTOME_MEMBRANE_TRAFFICKING
GO Biological Process (19): behavioral fear response (GO:0001662), receptor recycling (GO:0001881), response to oxidative stress (GO:0006979), endosome organization (GO:0007032), lysosomal transport (GO:0007041), neuromuscular junction development (GO:0007528), locomotory behavior (GO:0007626), intracellular protein localization (GO:0008104), endosomal transport (GO:0016197), positive regulation of Rac protein signal transduction (GO:0035022), synaptic transmission, glutamatergic (GO:0035249), positive regulation of GTPase activity (GO:0043547), positive regulation of protein kinase activity (GO:0045860), neuron projection morphogenesis (GO:0048812), regulation of endosome size (GO:0051036), protein homooligomerization (GO:0051260), regulation of postsynaptic membrane neurotransmitter receptor levels (GO:0099072), vesicle organization (GO:0016050), regulation of biological quality (GO:0065008)
GO Molecular Function (7): guanyl-nucleotide exchange factor activity (GO:0005085), GTPase activator activity (GO:0005096), small GTPase binding (GO:0031267), identical protein binding (GO:0042802), protein homodimerization activity (GO:0042803), protein serine/threonine kinase activator activity (GO:0043539), protein binding (GO:0005515)
GO Cellular Component (14): ruffle (GO:0001726), nucleus (GO:0005634), cytoplasm (GO:0005737), early endosome (GO:0005769), centrosome (GO:0005813), cytosol (GO:0005829), postsynaptic density (GO:0014069), lamellipodium (GO:0030027), dendrite (GO:0030425), growth cone (GO:0030426), vesicle (GO:0031982), protein-containing complex (GO:0032991), dendritic spine (GO:0043197), glutamatergic synapse (GO:0098978)
Reactome top-level categories
Rollup of top-7 pathways:
| Category | Pathways |
|---|---|
| Rab regulation of trafficking | 1 |
| RHO GTPase cycle | 1 |
| Signaling by Rho GTPases, Miro GTPases and RHOBTB3 | 1 |
| Vesicle-mediated transport | 1 |
| Membrane Trafficking | 1 |
| Signaling by Rho GTPases | 1 |
| Signal Transduction | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| GTPase activity | 2 |
| GTPase regulator activity | 2 |
| cell leading edge | 2 |
| plasma membrane bounded cell projection | 2 |
| cellular anatomical structure | 2 |
| behavioral defense response | 1 |
| fear response | 1 |
| endocytosis | 1 |
| receptor metabolic process | 1 |
| response to stress | 1 |
| endomembrane system organization | 1 |
| vesicle organization | 1 |
| vacuolar transport | 1 |
| synapse organization | 1 |
| behavior | 1 |
| macromolecule localization | 1 |
| vesicle-mediated transport | 1 |
| intracellular transport | 1 |
| Rac protein signal transduction | 1 |
| regulation of Rac protein signal transduction | 1 |
| positive regulation of small GTPase mediated signal transduction | 1 |
| chemical synaptic transmission | 1 |
| regulation of GTPase activity | 1 |
| positive regulation of hydrolase activity | 1 |
| positive regulation of protein phosphorylation | 1 |
| protein kinase activity | 1 |
| positive regulation of kinase activity | 1 |
| regulation of protein kinase activity | 1 |
| neuron projection development | 1 |
| plasma membrane bounded cell projection morphogenesis | 1 |
| regulation of vesicle size | 1 |
| protein complex oligomerization | 1 |
| regulation of biological quality | 1 |
| organelle organization | 1 |
| biological regulation | 1 |
| GTP binding | 1 |
| GDP binding | 1 |
| enzyme activator activity | 1 |
| GTPase binding | 1 |
| protein binding | 1 |
Protein interactions and networks
STRING
2554 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| ALS2 | SETX | Q7Z333 | 909 |
| ALS2 | RAB5A | P20339 | 893 |
| ALS2 | SOD1 | P00441 | 888 |
| ALS2 | VAPB | O95292 | 878 |
| ALS2 | FIG4 | Q92562 | 854 |
| ALS2 | TARDBP | Q13148 | 826 |
| ALS2 | FUS | P35637 | 820 |
| ALS2 | C9orf72 | Q96LT7 | 819 |
| ALS2 | GAPVD1 | Q14C86 | 799 |
| ALS2 | DCTN1 | Q14203 | 792 |
| ALS2 | CHMP2B | Q9UQN3 | 790 |
| ALS2 | SPG11 | Q96JI7 | 788 |
| ALS2 | OPTN | Q96CV9 | 771 |
| ALS2 | RABIF | P47224 | 748 |
| ALS2 | NEK1 | Q96PY6 | 746 |
IntAct
53 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| ALS2 | YWHAB | psi-mi:“MI:0915”(physical association) | 0.860 |
| YWHAB | PIK3C2A | psi-mi:“MI:0914”(association) | 0.800 |
| YWHAG | BLTP3B | psi-mi:“MI:0914”(association) | 0.640 |
| YWHAH | PLEKHG3 | psi-mi:“MI:0914”(association) | 0.610 |
| YWHAE | PIK3C2A | psi-mi:“MI:0914”(association) | 0.570 |
| YWHAH | BLTP3B | psi-mi:“MI:0914”(association) | 0.570 |
| YWHAZ | PIK3C2A | psi-mi:“MI:0914”(association) | 0.570 |
| NEURL4 | APBB1 | psi-mi:“MI:0914”(association) | 0.530 |
| YWHAQ | IGLC7 | psi-mi:“MI:0914”(association) | 0.530 |
| YWHAZ | BLTP3B | psi-mi:“MI:0914”(association) | 0.530 |
| SDF2 | ALS2 | psi-mi:“MI:0914”(association) | 0.530 |
| ALS2 | NEK1 | psi-mi:“MI:0915”(physical association) | 0.500 |
| YWHAB | PLEKHG3 | psi-mi:“MI:0914”(association) | 0.480 |
| YWHAQ | PLEKHG3 | psi-mi:“MI:0914”(association) | 0.480 |
| IQSEC1 | ALS2 | psi-mi:“MI:2364”(proximity) | 0.470 |
| IQSEC1 | ALS2 | psi-mi:“MI:0915”(physical association) | 0.470 |
| ALS2 | RAC1 | psi-mi:“MI:0915”(physical association) | 0.400 |
| RAB5A | ALS2 | psi-mi:“MI:0915”(physical association) | 0.400 |
| ALS2 | ALS2 | psi-mi:“MI:0915”(physical association) | 0.400 |
| ALS2 | CDC37 | psi-mi:“MI:0915”(physical association) | 0.400 |
| NEURL4 | CCDC85C | psi-mi:“MI:0914”(association) | 0.350 |
| DNAAF2 | DNM1L | psi-mi:“MI:0914”(association) | 0.350 |
| STXBP6 | SNAP23 | psi-mi:“MI:0914”(association) | 0.350 |
| ALS2 | CFAP410 | psi-mi:“MI:0914”(association) | 0.350 |
| SDF2 | HSPA5 | psi-mi:“MI:0914”(association) | 0.350 |
| YWHAB | PLEKHG3 | psi-mi:“MI:0914”(association) | 0.350 |
| YWHAG | C1orf226 | psi-mi:“MI:0914”(association) | 0.350 |
| YWHAZ | SPEG | psi-mi:“MI:0914”(association) | 0.350 |
| ALS2 | CHN2 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (45): ALS2 (Affinity Capture-MS), ALS2 (Affinity Capture-MS), ALS2 (Affinity Capture-MS), NEK1 (Affinity Capture-MS), ALS2 (Affinity Capture-MS), C21orf2 (Affinity Capture-MS), RBM6 (Affinity Capture-MS), CHN2 (Affinity Capture-MS), PDCD10 (Affinity Capture-MS), CHN1 (Affinity Capture-MS), ZYX (Affinity Capture-MS), ALS2 (Phenotypic Enhancement), ALS2 (Phenotypic Enhancement), ALS2 (Affinity Capture-MS), YWHAZ (Affinity Capture-MS)
ESM2 similar proteins: A0A140LI67, B5KFD7, D4A7V9, M0R4F8, O08774, O35827, O43187, O70167, O70173, O88866, O88900, O95398, O95704, P0C5Y8, Q0P5I2, Q13322, Q14449, Q4QQS0, Q5BIW4, Q5ICW4, Q5JV73, Q5PQS0, Q5R810, Q60760, Q68DX3, Q6IFT4, Q6IRN0, Q6P4K6, Q6REY9, Q6S5L8, Q6TXD4, Q7TSI1, Q80TQ5, Q80VA5, Q8BW88, Q8CFA1, Q8IWE5, Q8R1C9, Q8R2S1, Q8VCC8
Diamond homologs: A6QP75, P0C5Y8, Q5BIW4, Q60I26, Q60I27, Q920R0, Q96Q42, A6NED2, D3ZGQ5, F1RD40, O75592, O95199, O95714, P18754, P23800, P25171, P25183, P58544, Q15034, Q15751, Q4R828, Q4U2R1, Q52KW8, Q5DX34, Q5GLZ8, Q5PQN1, Q5RCZ7, Q6NRS1, Q6NXM2, Q6NYE2, Q6PAV2, Q6ZPR6, Q7TPH6, Q7ZZC8, Q86SG6, Q8BK67, Q8BTU7, Q8IVU3, Q8K1R7, Q8K2J9
SIGNOR signaling
3 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| ALS2 | “up-regulates activity” | RAB5A | binding |
| RAC1 | “up-regulates activity” | ALS2 | binding |
| RAB7A | “down-regulates activity” | ALS2 | binding |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 45 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Activation of BAD and translocation to mitochondria | 6 | 142.8× | 2e-10 |
| Chk1/Chk2(Cds1) mediated inactivation of Cyclin B:Cdk1 complex | 6 | 126.0× | 2e-10 |
| SARS-CoV-1 targets host intracellular signalling and regulatory pathways | 6 | 126.0× | 2e-10 |
| Activation of BH3-only proteins | 6 | 93.1× | 1e-09 |
| RHO GTPases activate PKNs | 7 | 69.4× | 3e-10 |
| Intrinsic Pathway for Apoptosis | 6 | 54.9× | 3e-08 |
| Translocation of SLC2A4 (GLUT4) to the plasma membrane | 8 | 38.6× | 9e-10 |
| SARS-CoV-1-host interactions | 6 | 32.9× | 5e-07 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| protein targeting | 6 | 53.6× | 4e-07 |
| intracellular protein localization | 6 | 15.3× | 4e-04 |
| endocytosis | 5 | 11.6× | 6e-03 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
1200 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 72 |
| Likely pathogenic | 39 |
| Uncertain significance | 499 |
| Likely benign | 378 |
| Benign | 94 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 100653 | NM_020919.4(ALS2):c.2761C>T (p.Arg921Ter) | Pathogenic |
| 1066545 | NM_020919.4(ALS2):c.3624+1G>A | Pathogenic |
| 1323101 | NM_020919.4(ALS2):c.3513-2del | Pathogenic |
| 1443530 | NM_020919.4(ALS2):c.1622del (p.His541fs) | Pathogenic |
| 1446510 | NM_020919.4(ALS2):c.4528C>T (p.Arg1510Ter) | Pathogenic |
| 1454451 | NM_020919.4(ALS2):c.4368del (p.Lys1457fs) | Pathogenic |
| 1455318 | NM_020919.4(ALS2):c.864del (p.Val289fs) | Pathogenic |
| 1460001 | NC_000002.11:g.(?202587756)(202589192_?)del | Pathogenic |
| 147402 | GRCh38/hg38 2q33.1(chr2:198767347-202353840)x1 | Pathogenic |
| 1678521 | NM_020919.4(ALS2):c.4223T>A (p.Leu1408Ter) | Pathogenic |
| 1678522 | NM_020919.4(ALS2):c.2707dup (p.Met903fs) | Pathogenic |
| 1679834 | NM_020919.4(ALS2):c.4270C>T (p.Gln1424Ter) | Pathogenic |
| 1693001 | NM_020919.4(ALS2):c.347G>A (p.Gly116Glu) | Pathogenic |
| 1693002 | NM_020919.4(ALS2):c.2580+2T>C | Pathogenic |
| 1693003 | NM_020919.4(ALS2):c.2417+1G>C | Pathogenic |
| 1693004 | NM_020919.4(ALS2):c.2713-2A>C | Pathogenic |
| 1693005 | NM_020919.4(ALS2):c.158_160del (p.Gly53del) | Pathogenic |
| 1693006 | NM_020919.4(ALS2):c.3517delG | Pathogenic |
| 1805070 | NM_020919.4(ALS2):c.3829A>T (p.Lys1277Ter) | Pathogenic |
| 183239 | NM_020919.4(ALS2):c.2002G>T (p.Gly668Ter) | Pathogenic |
| 2007382 | NM_020919.4(ALS2):c.977del (p.Gly326fs) | Pathogenic |
| 2115520 | NM_020919.4(ALS2):c.3070C>T (p.Gln1024Ter) | Pathogenic |
| 2155448 | NM_020919.4(ALS2):c.2839C>T (p.Gln947Ter) | Pathogenic |
| 2184611 | NM_020919.4(ALS2):c.2527C>T (p.Arg843Ter) | Pathogenic |
| 241308 | NM_020919.4(ALS2):c.1425_1428del (p.Gly477fs) | Pathogenic |
| 2444743 | NM_020919.4(ALS2):c.2110C>T (p.Arg704Ter) | Pathogenic |
| 2503048 | NM_020919.4(ALS2):c.3703-2A>C | Pathogenic |
| 2796368 | NM_020919.4(ALS2):c.114G>A (p.Trp38Ter) | Pathogenic |
| 2808755 | NM_020919.4(ALS2):c.460C>T (p.Gln154Ter) | Pathogenic |
| 2822022 | NM_020919.4(ALS2):c.641T>G (p.Leu214Ter) | Pathogenic |
SpliceAI
5071 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 2:201701885:CATGC:C | acceptor_gain | 1.0000 |
| 2:201704118:TCA:T | donor_loss | 1.0000 |
| 2:201704119:CA:C | donor_loss | 1.0000 |
| 2:201704121:C:A | donor_loss | 1.0000 |
| 2:201704607:T:TC | acceptor_gain | 1.0000 |
| 2:201705135:TTAC:T | donor_loss | 1.0000 |
| 2:201705136:TA:T | donor_loss | 1.0000 |
| 2:201705138:C:CT | donor_loss | 1.0000 |
| 2:201705197:AAAC:A | acceptor_gain | 1.0000 |
| 2:201705198:AACC:A | acceptor_loss | 1.0000 |
| 2:201705199:AC:A | acceptor_gain | 1.0000 |
| 2:201705199:ACCT:A | acceptor_loss | 1.0000 |
| 2:201705200:CC:C | acceptor_gain | 1.0000 |
| 2:201705200:CCTG:C | acceptor_loss | 1.0000 |
| 2:201705201:C:CC | acceptor_gain | 1.0000 |
| 2:201705201:C:CG | acceptor_loss | 1.0000 |
| 2:201706841:CTTA:C | donor_loss | 1.0000 |
| 2:201706842:TTA:T | donor_loss | 1.0000 |
| 2:201706843:TA:T | donor_loss | 1.0000 |
| 2:201706844:A:AC | donor_gain | 1.0000 |
| 2:201706844:ACCTC:A | donor_loss | 1.0000 |
| 2:201706845:C:CC | donor_gain | 1.0000 |
| 2:201706845:C:G | donor_loss | 1.0000 |
| 2:201706845:CCT:C | donor_gain | 1.0000 |
| 2:201706941:C:CT | acceptor_gain | 1.0000 |
| 2:201707018:CATAA:C | acceptor_gain | 1.0000 |
| 2:201707020:TAA:T | acceptor_gain | 1.0000 |
| 2:201707021:AA:A | acceptor_gain | 1.0000 |
| 2:201707023:C:CC | acceptor_gain | 1.0000 |
| 2:201707023:C:T | acceptor_loss | 1.0000 |
AlphaMissense
10815 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 2:201704189:A:G | L1623P | 1.000 |
| 2:201704207:A:G | L1617S | 1.000 |
| 2:201704457:G:T | A1612D | 1.000 |
| 2:201704458:C:G | A1612P | 1.000 |
| 2:201704460:C:G | R1611P | 1.000 |
| 2:201704506:A:G | W1596R | 1.000 |
| 2:201704506:A:T | W1596R | 1.000 |
| 2:201704577:A:G | L1572P | 1.000 |
| 2:201705151:A:G | L1559P | 1.000 |
| 2:201706870:A:G | L1519P | 1.000 |
| 2:201706903:A:T | V1508D | 1.000 |
| 2:201709963:C:G | G1400R | 1.000 |
| 2:201715799:A:G | W1293R | 1.000 |
| 2:201715799:A:T | W1293R | 1.000 |
| 2:201718203:A:G | L1237P | 1.000 |
| 2:201724344:A:G | W1155R | 1.000 |
| 2:201724344:A:T | W1155R | 1.000 |
| 2:201726689:A:G | W1053R | 1.000 |
| 2:201726689:A:T | W1053R | 1.000 |
| 2:201726860:A:G | W996R | 1.000 |
| 2:201726860:A:T | W996R | 1.000 |
| 2:201727739:A:G | W960R | 1.000 |
| 2:201727739:A:T | W960R | 1.000 |
| 2:201727773:G:C | F948L | 1.000 |
| 2:201727773:G:T | F948L | 1.000 |
| 2:201727775:A:G | F948L | 1.000 |
| 2:201728516:G:T | A946D | 1.000 |
| 2:201728522:A:T | V944D | 1.000 |
| 2:201728560:A:C | F931L | 1.000 |
| 2:201728560:A:T | F931L | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000035295 (2:201703890 T>C), RS1000046889 (2:201751081 G>A), RS1000082388 (2:201703378 C>T), RS1000085932 (2:201750860 T>C), RS1000145105 (2:201725869 A>G), RS1000181592 (2:201719941 T>G), RS1000224325 (2:201708033 A>C), RS1000255413 (2:201775530 C>A,T), RS1000317752 (2:201719596 T>A,C), RS1000341721 (2:201739339 A>G), RS1000354519 (2:201712758 A>G), RS1000365740 (2:201782408 C>T), RS1000432084 (2:201757025 A>G), RS1000511760 (2:201777030 T>C), RS1000548982 (2:201709236 T>C,G)
Disease associations
OMIM: gene MIM:606352 | disease phenotypes: MIM:607225, MIM:205100, MIM:606353, MIM:303350
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| ALS2-related motor neuron disease | Definitive | Autosomal recessive |
| amyotrophic lateral sclerosis type 2, juvenile | Strong | Autosomal recessive |
| juvenile primary lateral sclerosis | Strong | Autosomal recessive |
| infantile-onset ascending hereditary spastic paralysis | Strong | Autosomal recessive |
| juvenile amyotrophic lateral sclerosis | Supportive | Autosomal recessive |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| ALS2-related motor neuron disease | Definitive | AR |
Mondo (9): infantile-onset ascending hereditary spastic paralysis (MONDO:0011797), amyotrophic lateral sclerosis type 2, juvenile (MONDO:0008780), juvenile primary lateral sclerosis (MONDO:0011663), amyotrophic lateral sclerosis (MONDO:0004976), hereditary spastic paraplegia (MONDO:0019064), juvenile amyotrophic lateral sclerosis (MONDO:0017593), ALS2-related motor neuron disease (MONDO:0100227), axonal neuropathy (MONDO:0004183), microcephaly (MONDO:0001149)
Orphanet (5): Infantile-onset ascending hereditary spastic paralysis (Orphanet:293168), Juvenile amyotrophic lateral sclerosis (Orphanet:300605), Juvenile primary lateral sclerosis (Orphanet:247604), Amyotrophic lateral sclerosis (Orphanet:803), Hereditary spastic paraplegia (Orphanet:685)
HPO phenotypes
98 total (30 of 98 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000014 | Abnormality of the bladder |
| HP:0000020 | Urinary incontinence |
| HP:0000183 | Tongue muscle weakness |
| HP:0000252 | Microcephaly |
| HP:0000271 | Abnormality of the face |
| HP:0000478 | Abnormality of the eye |
| HP:0000496 | Abnormality of eye movement |
| HP:0000514 | Slow saccadic eye movements |
| HP:0000605 | Supranuclear gaze palsy |
| HP:0000639 | Nystagmus |
| HP:0000708 | Atypical behavior |
| HP:0000763 | Sensory neuropathy |
| HP:0000980 | Pallor |
| HP:0001152 | Saccadic smooth pursuit interruptions |
| HP:0001251 | Ataxia |
| HP:0001257 | Spasticity |
| HP:0001258 | Spastic paraplegia |
| HP:0001260 | Dysarthria |
| HP:0001263 | Global developmental delay |
| HP:0001264 | Spastic diplegia |
| HP:0001270 | Motor delay |
| HP:0001276 | Hypertonia |
| HP:0001285 | Spastic tetraparesis |
| HP:0001288 | Gait disturbance |
| HP:0001300 | Parkinsonism |
| HP:0001317 | Abnormal cerebellum morphology |
| HP:0001324 | Muscle weakness |
| HP:0001332 | Dystonia |
| HP:0001347 | Hyperreflexia |
GWAS associations
2 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST008764_1 | Perceived intensity of neohesperidin dihydrochalcone | 6.000000e-06 |
| GCST008766_1 | Perceived intensity of sweet substances | 6.000000e-06 |
MeSH disease descriptors (6)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D000690 | Amyotrophic Lateral Sclerosis | C10.228.854.139; C10.574.562.250; C10.574.950.050; C10.668.467.250; C18.452.845.800.050 |
| D008831 | Microcephaly | C05.660.207.620; C10.500.507.400.500; C16.131.621.207.620; C16.131.666.507.400.500 |
| D015419 | Spastic Paraplegia, Hereditary | C10.500.300.820; C10.574.500.495.820; C10.668.829.800.300.820; C16.131.666.300.820; C16.320.400.375.820 |
| C565957 | Amyotrophic Lateral Sclerosis 2, Juvenile (supp.) | |
| C537217 | Hereditary spastic paralysis, infantile onset ascending (supp.) | |
| C536416 | Primary lateral sclerosis juvenile (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
40 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | increases expression, affects expression, affects cotreatment | 4 |
| sodium arsenite | increases reaction, increases abundance, increases expression, affects binding, affects reaction | 3 |
| Cisplatin | affects expression, decreases expression | 2 |
| Tobacco Smoke Pollution | increases expression | 2 |
| FR900359 | affects phosphorylation | 1 |
| trichostatin A | affects expression | 1 |
| cinnamaldehyde | increases expression | 1 |
| tris(1,3-dichloro-2-propyl)phosphate | increases expression | 1 |
| cobaltous chloride | increases expression | 1 |
| manganese chloride | increases abundance, increases expression | 1 |
| cupric oxide | increases expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, increases expression | 1 |
| Grape Seed Proanthocyanidins | affects cotreatment, increases expression | 1 |
| dorsomorphin | affects cotreatment, increases expression | 1 |
| NSC 689534 | affects binding, increases expression | 1 |
| Resveratrol | affects cotreatment, increases expression | 1 |
| Decitabine | affects expression | 1 |
| Acetaldehyde | increases expression | 1 |
| Acetaminophen | increases expression | 1 |
| Arsenic | increases abundance, increases expression | 1 |
| Atrazine | decreases expression | 1 |
| Benzo(a)pyrene | increases methylation, affects methylation | 1 |
| Caffeine | affects phosphorylation | 1 |
| Calcitriol | increases expression | 1 |
| Catechin | increases expression, affects cotreatment | 1 |
| Copper | increases expression, affects binding | 1 |
| Coumestrol | decreases expression | 1 |
| Estradiol | affects expression | 1 |
| Ethyl Methanesulfonate | increases expression | 1 |
Cellosaurus cell lines
2 cell lines: 2 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_C7HF | HAP1 ALS2 (-) 1 | Cancer cell line | Male |
| CVCL_C7HG | HAP1 ALS2 (-) 2 | Cancer cell line | Male |
Clinical trials (associated diseases)
300 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00542412 | PHASE4 | COMPLETED | CARE Canadian ALS Riluzole Evaluation |
| NCT00560287 | PHASE4 | UNKNOWN | Non-Invasive Ventilation in Amyotrophic Lateral Sclerosis |
| NCT00613899 | PHASE4 | COMPLETED | Feasibility of Telesurveillance and Home Cough Assistance for Amyotrophic Lateral Patients (ALS) |
| NCT04997954 | PHASE4 | UNKNOWN | EMERALD TRIAL Open Label Extension Study |
| NCT06849115 | PHASE4 | COMPLETED | Effects of L-Carnitine in Amyotrophic Lateral Sclerosis Patients With CHCHD10 Mutations |
| NCT07223723 | PHASE4 | RECRUITING | A Study to Learn More About the Long-Term Safety of Tofersen (Qalsody) in Chinese Participants With SOD-1 Amyotrophic Lateral Sclerosis (ALS) |
| NCT00021697 | PHASE3 | COMPLETED | Safety/Efficacy of AVP-923 in the Treatment of Emotional Lability (Uncontrolled Crying & Laughing) in Patients With ALS |
| NCT00035815 | PHASE3 | COMPLETED | Insulin-like Growth Factor-1 in Amyotrophic Lateral Sclerosis (ALS) Trial |
| NCT00047723 | PHASE3 | COMPLETED | Minocycline to Treat Amyotrophic Lateral Sclerosis |
| NCT00069186 | PHASE3 | UNKNOWN | Study of Creatine Monohydrate in Patients With Amyotrophic Lateral Sclerosis |
| NCT00136110 | PHASE3 | COMPLETED | Trial of Sodium Valproate in Amyotrophic Lateral Sclerosis |
| NCT00330681 | PHASE3 | COMPLETED | Efficacy and Safety Study of MCI-186 for Treatment of Amyotrophic Lateral Sclerosis (ALS) |
| NCT00349622 | PHASE3 | COMPLETED | Clinical Trial Ceftriaxone in Subjects With ALS |
| NCT00372879 | PHASE3 | COMPLETED | Clinical Trial of Vitamin E to Treat Muscular Cramps in Patients With ALS |
| NCT00415519 | PHASE3 | COMPLETED | Efficacy and Safety Study of MCI-186 for Treatment of Amyotrophic Lateral Sclerosis (ALS) Who Met Severity Classification III |
| NCT00424463 | PHASE3 | COMPLETED | Expanded Controlled Study of Safety and Efficacy of MCI-186 in Patients With Amyotrophic Lateral Sclerosis (ALS) |
| NCT00839033 | PHASE3 | TERMINATED | Evaluation of a Mechanical Device During Acute Respiratory Failure in Patients With Neuromuscular Disorders |
| NCT00868166 | PHASE3 | COMPLETED | Safety and Efficacy of TRO19622 as add-on Therapy to Riluzole Versus Placebo in Treatment of Patients Suffering From ALS |
| NCT00965497 | PHASE3 | COMPLETED | Escitalopram (Lexapro) for Depression MS or ALS |
| NCT01016522 | PHASE3 | TERMINATED | Safety and Tolerability of the Ketogenic Diet in Amyotrophic Lateral Sclerosis (ALS) |
| NCT01160263 | PHASE3 | COMPLETED | Study of Dopamine and Serotonin Transporters in Patients With Amyotrophic Lateral Sclerosis and Controls |
| NCT01281189 | PHASE3 | COMPLETED | Phase 3 Study of Dexpramipexole in ALS |
| NCT01492686 | PHASE3 | COMPLETED | Phase 3 Study of MCI-186 for Treatment of Amyotrophic Lateral Sclerosis |
| NCT01583088 | PHASE3 | TERMINATED | Early Stage Amyotrophic Lateral Sclerosis Phrenic Stimulation |
| NCT01622088 | PHASE3 | TERMINATED | Phase 3 Extension Study of Dexpramipexole in ALS |
| NCT02496767 | PHASE3 | COMPLETED | Ventilatory Investigation of Tirasemtiv and Assessment of Longitudinal Indices After Treatment for a Year |
| NCT02623699 | PHASE3 | COMPLETED | An Efficacy, Safety, Tolerability, Pharmacokinetics and Pharmacodynamics Study of BIIB067 (Tofersen) in Adults With Inherited Amyotrophic Lateral Sclerosis (ALS) |
| NCT02936635 | PHASE3 | COMPLETED | A Study for Patients Who Completed VITALITY-ALS (CY 4031) |
| NCT03127267 | PHASE3 | RECRUITING | Efficacy and Safety of Masitinib Versus Placebo in the Treatment of ALS Patients |
| NCT03280056 | PHASE3 | COMPLETED | Safety and Efficacy of Repeated Administrations of NurOwn® in ALS Patients |
| NCT03491462 | PHASE3 | COMPLETED | Arimoclomol in Amyotropic Lateral Sclerosis |
| NCT03505021 | PHASE3 | COMPLETED | Effects of Oral Levosimendan (ODM-109) on Respiratory Function in Patients With ALS |
| NCT03548311 | PHASE3 | COMPLETED | Clinical Trial of Ultra-high Dose Methylcobalamin for ALS |
| NCT03690791 | PHASE3 | UNKNOWN | Efficacy of Cannabinoids in Amyotrophic Lateral Sclerosis or Motor Neurone Disease |
| NCT03800524 | PHASE3 | UNKNOWN | Safety and Efficacy of TUDCA as add-on Treatment in Patients Affected by ALS |
| NCT03836716 | PHASE3 | TERMINATED | Arimoclomol in Amyotropic Lateral Sclerosis - Open Label Extension Trial |
| NCT03948178 | PHASE3 | TERMINATED | Effects of Oral Levosimendan on Respiratory Function in Patients With Amyotrophic Lateral Sclerosis (ALS): Open-Label Extension |
| NCT04165824 | PHASE3 | COMPLETED | Safety Study of Oral Edaravone Administered in Subjects With ALS |
| NCT04248465 | PHASE3 | TERMINATED | An Efficacy and Safety Study of Ravulizumab in ALS Participants |
| NCT04569084 | PHASE3 | TERMINATED | Efficacy and Safety Study of Oral Edaravone Administered in Subjects With ALS |
Related Atlas pages
- Associated diseases: ALS2-related motor neuron disease, amyotrophic lateral sclerosis type 2, juvenile, juvenile primary lateral sclerosis, infantile-onset ascending hereditary spastic paralysis, juvenile amyotrophic lateral sclerosis
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): ALS2-related motor neuron disease, amyotrophic lateral sclerosis type 2, juvenile, axonal neuropathy, infantile-onset ascending hereditary spastic paralysis, juvenile amyotrophic lateral sclerosis, juvenile primary lateral sclerosis