AMD1
geneOn this page
Also known as SAMDC
Summary
AMD1 (adenosylmethionine decarboxylase 1, HGNC:457) is a protein-coding gene on chromosome 6q21, encoding S-adenosylmethionine decarboxylase proenzyme (P17707). Essential for biosynthesis of the polyamines spermidine and spermine. It is a selective cancer dependency (DepMap: 43.0% of cell lines).
This gene encodes an important intermediate enzyme in polyamine biosynthesis. The polyamines spermine, spermidine, and putrescine are low-molecular-weight aliphatic amines essential for cellular proliferation and tumor promotion. Multiple alternatively spliced transcript variants have been identified. Pseudogenes of this gene are found on chromosomes 5, 6, 10, X and Y.
Source: NCBI Gene 262 — RefSeq curated summary.
At a glance
- GWAS associations: 7
- Clinical variants (ClinVar): 60 total — 2 pathogenic, 1 likely-pathogenic
- Druggable target: yes
- Cancer dependency (DepMap): dependent in 43.0% of screened cell lines
- MANE Select transcript:
NM_001634
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:457 |
| Approved symbol | AMD1 |
| Name | adenosylmethionine decarboxylase 1 |
| Location | 6q21 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | SAMDC |
| Ensembl gene | ENSG00000123505 |
| Ensembl biotype | protein_coding |
| OMIM | 180980 |
| Entrez | 262 |
Gene structure
Transcript identifiers
Ensembl transcripts: 15 — 11 protein_coding, 2 nonsense_mediated_decay, 2 retained_intron
ENST00000368876, ENST00000368877, ENST00000368885, ENST00000451850, ENST00000465404, ENST00000612642, ENST00000619590, ENST00000672937, ENST00000675380, ENST00000851729, ENST00000940236, ENST00000940237, ENST00000940238, ENST00000940239, ENST00000940240
RefSeq mRNA: 7 — MANE Select: NM_001634
NM_001287214, NM_001287215, NM_001287216, NM_001393406, NM_001393407, NM_001393408, NM_001634
CCDS: CCDS5086, CCDS75504, CCDS75505
Canonical transcript exons
ENST00000368885 — 9 exons
| Exon | Start | End |
|---|---|---|
| ENSE00002270479 | 110890254 | 110890356 |
| ENSE00003443472 | 110893476 | 110895713 |
| ENSE00003525544 | 110888857 | 110888983 |
| ENSE00003566640 | 110892161 | 110892203 |
| ENSE00003568309 | 110887505 | 110887591 |
| ENSE00003714051 | 110892735 | 110892827 |
| ENSE00003742253 | 110892299 | 110892443 |
| ENSE00003746288 | 110892910 | 110893065 |
| ENSE00003844320 | 110874785 | 110875215 |
Expression profiles
Bgee: expression breadth ubiquitous, 292 present calls, max score 99.24.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 110.6608 / max 1085.8300, expressed in 1824 samples.
FANTOM5 promoters (5 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 69262 | 108.7744 | 1824 |
| 69258 | 1.2819 | 720 |
| 69259 | 0.4477 | 205 |
| 69260 | 0.0877 | 30 |
| 204150 | 0.0690 | 29 |
Top tissues by expression
295 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| secondary oocyte | CL:0000655 | 99.24 | gold quality |
| oocyte | CL:0000023 | 98.73 | gold quality |
| corpus callosum | UBERON:0002336 | 97.95 | gold quality |
| prostate gland | UBERON:0002367 | 97.74 | gold quality |
| mucosa of sigmoid colon | UBERON:0004993 | 96.93 | gold quality |
| middle frontal gyrus | UBERON:0002702 | 96.54 | gold quality |
| C1 segment of cervical spinal cord | UBERON:0006469 | 96.48 | gold quality |
| postcentral gyrus | UBERON:0002581 | 96.22 | gold quality |
| colonic mucosa | UBERON:0000317 | 96.12 | gold quality |
| oral cavity | UBERON:0000167 | 96.07 | gold quality |
| medial globus pallidus | UBERON:0002477 | 95.98 | gold quality |
| spinal cord | UBERON:0002240 | 95.95 | gold quality |
| heart right ventricle | UBERON:0002080 | 95.90 | gold quality |
| esophagus squamous epithelium | UBERON:0006920 | 95.81 | gold quality |
| parietal lobe | UBERON:0001872 | 95.76 | gold quality |
| amniotic fluid | UBERON:0000173 | 95.73 | gold quality |
| globus pallidus | UBERON:0001875 | 95.69 | gold quality |
| endometrium | UBERON:0001295 | 95.66 | gold quality |
| monocyte | CL:0000576 | 95.59 | gold quality |
| choroid plexus epithelium | UBERON:0003911 | 95.53 | gold quality |
| prefrontal cortex | UBERON:0000451 | 95.48 | gold quality |
| mononuclear cell | CL:0000842 | 95.39 | gold quality |
| inferior vagus X ganglion | UBERON:0005363 | 95.32 | gold quality |
| lower lobe of lung | UBERON:0008949 | 95.31 | gold quality |
| leukocyte | CL:0000738 | 95.28 | gold quality |
| Ammon’s horn | UBERON:0001954 | 95.16 | gold quality |
| bone marrow | UBERON:0002371 | 95.06 | gold quality |
| epithelium of esophagus | UBERON:0001976 | 95.00 | gold quality |
| cauda epididymis | UBERON:0004360 | 94.94 | gold quality |
| palpebral conjunctiva | UBERON:0001812 | 94.93 | gold quality |
Single-cell (SCXA)
Detected in 4 experiment(s), a significant marker in 3.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-GEOD-135922 | yes | 19.89 |
| E-HCAD-1 | yes | 11.43 |
| E-ENAD-20 | no | 1253.52 |
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): MYC
miRNA regulators (miRDB)
191 targeting AMD1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-513A-5P | 100.00 | 69.77 | 2465 |
| HSA-MIR-1252-5P | 100.00 | 69.80 | 2774 |
| HSA-MIR-3689D | 100.00 | 66.14 | 1181 |
| HSA-MIR-6851-5P | 100.00 | 65.63 | 1294 |
| HSA-MIR-4533 | 100.00 | 69.48 | 2758 |
| HSA-MIR-4531 | 99.99 | 69.70 | 3181 |
| HSA-MIR-186-5P | 99.99 | 70.83 | 3707 |
| HSA-MIR-513B-5P | 99.99 | 69.96 | 2150 |
| HSA-MIR-3662 | 99.99 | 73.82 | 5684 |
| HSA-MIR-4282 | 99.99 | 75.36 | 6408 |
| HSA-MIR-371B-5P | 99.99 | 75.34 | 4759 |
| HSA-MIR-6870-5P | 99.99 | 68.55 | 2115 |
| HSA-MIR-5696 | 99.98 | 72.36 | 4487 |
| HSA-MIR-27A-3P | 99.98 | 72.13 | 2955 |
| HSA-MIR-27B-3P | 99.98 | 72.13 | 2955 |
| HSA-MIR-9985 | 99.98 | 72.11 | 2939 |
| HSA-MIR-373-5P | 99.98 | 75.36 | 4753 |
| HSA-MIR-616-5P | 99.98 | 75.58 | 4775 |
| HSA-MIR-548N | 99.98 | 71.94 | 4170 |
| HSA-MIR-3688-3P | 99.97 | 72.02 | 2834 |
| HSA-MIR-4723-5P | 99.97 | 68.70 | 2034 |
| HSA-MIR-5698 | 99.97 | 68.49 | 2029 |
| HSA-MIR-7111-5P | 99.97 | 68.48 | 2062 |
| HSA-MIR-1250-3P | 99.96 | 70.04 | 4038 |
| HSA-MIR-548AJ-3P | 99.96 | 73.38 | 5345 |
| HSA-MIR-548X-3P | 99.96 | 73.38 | 5345 |
| HSA-MIR-128-3P | 99.95 | 71.17 | 2484 |
| HSA-MIR-216A-3P | 99.95 | 71.19 | 2505 |
| HSA-MIR-9983-3P | 99.94 | 71.48 | 3631 |
Functional genomics
DepMap (CRISPR cell-line fitness): dependent in 43.0% of screened cell lines.
Literature-anchored findings (GeneRIF, showing 21)
- AdoMetDC is ubiquitinated and degraded by the 26 S proteasome (PMID:14718534)
- The adhesion-dependent expression of SAM-DC and ODC contributes to extracellular matrix-dependent salivary gland cell differentiation. (PMID:15521072)
- For such cells, gamma-radiation and cisplatin, which are direct DNA-damaging agents, were very effective for promoting cell death. (PMID:17069747)
- schizophrenia and bipolar disorder patients, the increase of S-adenosyl methionine is associated with an overexpression of DNA methyltransferase-1 mRNA in Brodmann’s area 9 GABAergic neurons. (PMID:17259861)
- Antisense RNA specifically inhibited the expression of ODC and AdoMetDC and the synthesis of polyamine, while it induced p21 expression, resulting in cell growth arrest in the G1 phase in prostate cancer cells (PMID:18548481)
- Binding of putrescine to wild type dimeric ADOMETDC protein is cooperative; putrescine activates the enzyme through electrostatic effects and acts as a switch to correctly orient key catalytic residues. (PMID:19053272)
- determined crystal structures cocrystallized with 5’-deoxy-5’-dimethylthioadenosine and 5’-deoxy-5’-(N-dimethyl)amino-8-methyladenosine. The crystal structures revealed cation-pi interaction between the ligand and aromatic side chains of Phe7 and Phe223 (PMID:19527050)
- Decreased AMD1 is associated with prostate cancer. (PMID:20215859)
- Overexpression of S-adenosylmethionine decarboxylase in rodent fibroblasts led to aggressive transformants. (PMID:21134486)
- This study demomistrated that H3K4me3 modification plays an important role in up regulation of AMD1 in prefrontal cortex. (PMID:22008221)
- Genetic variant of AMD1 is associated with obesity. (PMID:22496743)
- Gene expression studies have identified altered expression of AMD1 in suicide completers with a history of mood disorders. (PMID:23260169)
- (AMD1)-mediated mRNA processing and cell adhesion activated & inhibited transition mechanisms (PMID:24652003)
- AMD1 gene variants previously found to associate among Indian children did not associate with risk of obesity or obesity-related quantitative measures among Caucasian children and juvenile men from Denmark. (PMID:26558825)
- AMD1 is upregulated in human prostate cancer with activated mTORC1 (PMID:28658205)
- AMD1 mRNA employs ribosome stalling as a mechanism for molecular memory formation (PMID:29310120)
- this study shows that AMD1 promotes cell migration in epidermal wound healimg (PMID:29906410)
- Three SNPs (RUNX3 rs7553295 G > T, AMD1 rs1279590 G > A and MSRA rs73534533 C > A) were replicated in the validation dataset, and their meta-analysis showed an adjusted hazards ratio [HR] of 0.82 [95% confidence interval (CI) =0.75-0.89] and pmeta = 2.86 x 10(-6) , 0.81 (0.73-0.91) and pmeta = 4.63 x 10(-4) , and 0.77 (0.68-0.89) and pmeta = 2.07 x 10(-4) , respectively). (PMID:30650190)
- Polyamine synthesis enzyme AMD1 is closely associated with tumorigenesis and prognosis of human gastric cancers. (PMID:31140554)
- AMD1 is required for the maintenance of leukemic stem cells and promotes chronic myeloid leukemic growth. (PMID:33203990)
- AMD1 promotes breast cancer aggressiveness via a spermidine-eIF5A hypusination-TCF4 axis. (PMID:38654332)
Cross-species orthologs
6 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | amd1 | ENSDARG00000043856 |
| mus_musculus | Amd2 | ENSMUSG00000063953 |
| mus_musculus | Amd1 | ENSMUSG00000075232 |
| rattus_norvegicus | Amd1 | ENSRNOG00000000585 |
| drosophila_melanogaster | SamDC | FBGN0019932 |
| caenorhabditis_elegans | smd-1 | WBGENE00004875 |
Protein
Protein identifiers
S-adenosylmethionine decarboxylase proenzyme — P17707 (reviewed: P17707)
All UniProt accessions (5): A0A5F9ZHD5, B4DZ60, F6R5I9, P17707, Q5VXN5
UniProt curated annotations — full annotation on UniProt →
Function. Essential for biosynthesis of the polyamines spermidine and spermine. Promotes maintenance and self-renewal of embryonic stem cells, by maintaining spermine levels.
Subunit / interactions. Heterotetramer of two alpha and two beta chains.
Post-translational modifications. Is synthesized initially as an inactive proenzyme. Formation of the active enzyme involves a self-maturation process in which the active site pyruvoyl group is generated from an internal serine residue via an autocatalytic post-translational modification. Two non-identical subunits are generated from the proenzyme in this reaction, and the pyruvate is formed at the N-terminus of the alpha chain, which is derived from the carboxyl end of the proenzyme. The post-translation cleavage follows an unusual pathway, termed non-hydrolytic serinolysis, in which the side chain hydroxyl group of the serine supplies its oxygen atom to form the C-terminus of the beta chain, while the remainder of the serine residue undergoes an oxidative deamination to produce ammonia and the pyruvoyl group blocking the N-terminus of the alpha chain.
Activity regulation. Both proenzyme processing and catalytic activity are stimulated by putrescine. Catalytic activity is inhibited by iodoacetic acid.
Cofactor. Binds 1 pyruvoyl group covalently per subunit.
Pathway. Amine and polyamine biosynthesis; S-adenosylmethioninamine biosynthesis; S-adenosylmethioninamine from S-adenosyl-L-methionine: step 1/1.
Similarity. Belongs to the eukaryotic AdoMetDC family.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| P17707-1 | 1 | yes |
| P17707-2 | 2 |
RefSeq proteins (7): NP_001274143, NP_001274144, NP_001274145, NP_001380335, NP_001380336, NP_001380337, NP_001625* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001985 | S-AdoMet_decarboxylase_euk | Family |
| IPR016067 | S-AdoMet_deCO2ase_core | Homologous_superfamily |
| IPR018166 | S-AdoMet_deCO2ase_CS | Conserved_site |
| IPR048283 | AdoMetDC-like | Family |
Pfam: PF01536
Enzyme classification (BRENDA):
- EC 4.1.1.50 — adenosylmethionine decarboxylase (BRENDA: 59 organisms, 25 substrates, 228 inhibitors, 45 Km, 15 kcat entries)
Substrate kinetics (BRENDA)
4 substrates with measured Km, best-characterized 4. Km ranges are aggregated across organisms/conditions.
| Substrate | Km (mM) | Measurements |
|---|---|---|
| S-ADENOSYL-L-METHIONINE | 0.0019–1 | 36 |
| S-ADENOSYLMETHIONINE | 0.06–0.96 | 4 |
| LYSINE | 1.518 | 1 |
| S-ADENOSYL-METHIONINE | — | 0 |
Catalyzed reactions (Rhea), 1 shown:
- S-adenosyl-L-methionine + H(+) = S-adenosyl 3-(methylsulfanyl)propylamine + CO2 (RHEA:15981)
UniProt features (73 total): mutagenesis site 25, strand 17, helix 13, active site 6, binding site 4, chain 2, modified residue 2, site 1, splice variant 1, sequence conflict 1, turn 1
Structure
Experimental structures (PDB)
28 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 1JL0 | X-RAY DIFFRACTION | 1.5 |
| 3EP6 | X-RAY DIFFRACTION | 1.7 |
| 1MSV | X-RAY DIFFRACTION | 1.75 |
| 3EPB | X-RAY DIFFRACTION | 1.75 |
| 3H0W | X-RAY DIFFRACTION | 1.81 |
| 9P1H | X-RAY DIFFRACTION | 1.81 |
| 3DZ6 | X-RAY DIFFRACTION | 1.83 |
| 3DZ4 | X-RAY DIFFRACTION | 1.84 |
| 3EP3 | X-RAY DIFFRACTION | 1.84 |
| 3DZ2 | X-RAY DIFFRACTION | 1.86 |
| 3EP4 | X-RAY DIFFRACTION | 1.89 |
| 1I7B | X-RAY DIFFRACTION | 1.9 |
| 3DZ7 | X-RAY DIFFRACTION | 1.91 |
| 3EP8 | X-RAY DIFFRACTION | 1.97 |
| 3EP5 | X-RAY DIFFRACTION | 1.99 |
| 1I72 | X-RAY DIFFRACTION | 2 |
| 3EP7 | X-RAY DIFFRACTION | 2 |
| 1I79 | X-RAY DIFFRACTION | 2.01 |
| 3EPA | X-RAY DIFFRACTION | 2.1 |
| 9PBB | X-RAY DIFFRACTION | 2.17 |
| 9P7Q | X-RAY DIFFRACTION | 2.21 |
| 1I7M | X-RAY DIFFRACTION | 2.24 |
| 3H0V | X-RAY DIFFRACTION | 2.24 |
| 1JEN | X-RAY DIFFRACTION | 2.25 |
| 3EP9 | X-RAY DIFFRACTION | 2.35 |
| 1I7C | X-RAY DIFFRACTION | 2.4 |
| 3DZ5 | X-RAY DIFFRACTION | 2.43 |
| 3DZ3 | X-RAY DIFFRACTION | 2.62 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P17707-F1 | 93.52 | 0.86 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (7): 67–68 (cleavage (non-hydrolytic); by autolysis); 8; 11; 68 (schiff-base intermediate with substrate; via pyruvic acid); 82 (proton donor; for catalytic activity); 229 (proton acceptor; for processing activity); 243 (proton acceptor; for processing activity)
Ligand- & substrate-binding residues (4): 223; 247; 7; 67
Post-translational modifications (2): 68, 298
Mutagenesis-validated functional residues (25):
| Position | Phenotype |
|---|---|
| 7 | no effect. |
| 8 | loss of activity. normal putrescine-stimulated processing. |
| 11 | loss of activity. loss of putrescine-stimulated processing. |
| 15 | little effect. |
| 49 | little effect. |
| 50 | 17 percent decrease in catalytic activity. no effect on processing. |
| 61 | little effect. |
| 66 | 38 percent decrease in catalytic activity. slight reduction in processing. |
| 67 | little effect. |
| 68–69 | loss of catalytic activity and processing. |
| 68 | loss of catalytic activity and processing. |
| 69 | 24 percent decrease in catalytic activity. slight reduction in processing. |
| 80 | greatly reduced catalytic activity. no putrescine-stimulated processing. |
| 82 | loss of activity. greatly reduced putrescine-stimulated processing. |
| 223 | no effect. |
| 226 | little effect. |
| 229 | loss of processing. |
| 229 | greatly reduced processing. |
| 229 | greatly reduced catalytic activity but little effect on processing. |
| 243 | greatly reduced catalytic activity and processing. |
| 243 | loss of processing. |
| 247 | little effect. |
| 249 | little effect. |
Function
Pathways and Gene Ontology
Reactome pathways
1 pathways
| ID | Pathway |
|---|---|
| R-HSA-351202 | Metabolism of polyamines |
MSigDB gene sets: 283 (showing top):
MYAATNNNNNNNGGC_UNKNOWN, ELVIDGE_HYPOXIA_DN, AAGCAAT_MIR137, BUYTAERT_PHOTODYNAMIC_THERAPY_STRESS_DN, GRUETZMANN_PANCREATIC_CANCER_DN, KAAB_FAILED_HEART_ATRIUM_DN, PAL_PRMT5_TARGETS_UP, BROWNE_HCMV_INFECTION_8HR_UP, ENK_UV_RESPONSE_KERATINOCYTE_UP, KEGG_CYSTEINE_AND_METHIONINE_METABOLISM, ASTON_MAJOR_DEPRESSIVE_DISORDER_DN, TATTATA_MIR374, GENTILE_RESPONSE_CLUSTER_D3, RACCACAR_AML_Q6, CHANDRAN_METASTASIS_DN
GO Biological Process (4): polyamine metabolic process (GO:0006595), spermine biosynthetic process (GO:0006597), spermidine biosynthetic process (GO:0008295), polyamine biosynthetic process (GO:0006596)
GO Molecular Function (6): adenosylmethionine decarboxylase activity (GO:0004014), putrescine binding (GO:0019810), identical protein binding (GO:0042802), protein binding (GO:0005515), lyase activity (GO:0016829), carboxy-lyase activity (GO:0016831)
GO Cellular Component (1): cytosol (GO:0005829)
Reactome top-level categories
Rollup of top-1 pathways:
| Category | Pathways |
|---|---|
| Metabolism of amino acids and derivatives | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| polyamine biosynthetic process | 2 |
| biogenic amine metabolic process | 1 |
| spermine metabolic process | 1 |
| spermidine metabolic process | 1 |
| polyamine metabolic process | 1 |
| biogenic amine biosynthetic process | 1 |
| carboxy-lyase activity | 1 |
| polyamine binding | 1 |
| cation binding | 1 |
| protein binding | 1 |
| binding | 1 |
| catalytic activity | 1 |
| carbon-carbon lyase activity | 1 |
| cytoplasm | 1 |
| cellular anatomical structure | 1 |
Protein interactions and networks
STRING
0 interactions, top by confidence (×1000):
IntAct
72 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| MED4 | MED19 | psi-mi:“MI:0914”(association) | 0.900 |
| MED28 | MED19 | psi-mi:“MI:0914”(association) | 0.730 |
| SHC1 | AP2A1 | psi-mi:“MI:0914”(association) | 0.730 |
| CCDC120 | AIP | psi-mi:“MI:0914”(association) | 0.640 |
| HDAC11 | CLUH | psi-mi:“MI:0914”(association) | 0.640 |
| PTH2 | AMD1 | psi-mi:“MI:0915”(physical association) | 0.590 |
| AMD1 | AMD1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| AMD1 | THAP4 | psi-mi:“MI:0915”(physical association) | 0.560 |
| KPTN | EIF4G3 | psi-mi:“MI:0914”(association) | 0.530 |
| POP4 | NME2P1 | psi-mi:“MI:0914”(association) | 0.530 |
| BMP15 | AMD1 | psi-mi:“MI:0914”(association) | 0.530 |
| POMC | AMD1 | psi-mi:“MI:0914”(association) | 0.530 |
| PRELP | AMD1 | psi-mi:“MI:0914”(association) | 0.530 |
| GLTP | AMD1 | psi-mi:“MI:0914”(association) | 0.530 |
| FBXO4 | AMD1 | psi-mi:“MI:0914”(association) | 0.530 |
| ARID1A | ACTL6A | psi-mi:“MI:0914”(association) | 0.530 |
| CLEC11A | VWA8 | psi-mi:“MI:0914”(association) | 0.530 |
| MISP | OBSL1 | psi-mi:“MI:0914”(association) | 0.530 |
| ADCYAP1 | GGPS1 | psi-mi:“MI:0914”(association) | 0.530 |
| RPP25L | RPP40 | psi-mi:“MI:0914”(association) | 0.530 |
BioGRID (101): AMD1 (Affinity Capture-MS), AMD1 (Affinity Capture-MS), AMD1 (Affinity Capture-MS), AMD1 (Affinity Capture-MS), AMD1 (Affinity Capture-MS), AMD1 (Affinity Capture-MS), AMD1 (Affinity Capture-MS), AMD1 (Affinity Capture-MS), AMD1 (Affinity Capture-MS), AMD1 (Affinity Capture-MS), AMD1 (Affinity Capture-MS), AMD1 (Affinity Capture-MS), AMD1 (Two-hybrid), AMD1 (Affinity Capture-MS), AMD1 (Affinity Capture-MS)
ESM2 similar proteins: A1L4T4, A2XCT8, A2Z7C4, A9SCJ6, A9SDW6, A9SS00, B4G0F3, B7PRF6, B8BKI7, B9SQI7, C3ZAH2, C5WWY0, C5X1F5, D7T737, F6HDT7, F6QS54, F7FKV1, O00763, O48707, P17707, P28918, P35574, P46952, P46953, P50243, Q0VCA8, Q10RE5, Q2LZI9, Q2PQH8, Q3B8C8, Q3ZBL1, Q562C9, Q5IH13, Q5IH14, Q5ZL43, Q6DIY2, Q6DIZ0, Q6P7I0, Q6PBX5, Q6YXW6
Diamond homologs: A2XV58, D3Z6H8, O02655, O04009, O24575, O49972, O65354, O76240, O80402, P0DMN7, P17707, P17708, P21182, P28918, P46255, P50243, P50244, P79888, P82185, P91931, Q04694, Q0JC10, Q25264, Q27883, Q38IY3, Q39676, Q39677, Q3E9D5, Q42613, Q42679, Q42829, Q43820, Q8T1E3, Q96286, Q96471, Q96555, Q9AXE3, Q9LSU6, Q9M4D8, Q9M6K1
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
60 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 2 |
| Likely pathogenic | 1 |
| Uncertain significance | 34 |
| Likely benign | 0 |
| Benign | 1 |
Top pathogenic / likely-pathogenic (3)
| Variant ID | HGVS | Classification |
|---|---|---|
| 688010 | GRCh37/hg19 6q21-22.31(chr6:110981075-119608396)x1 | Pathogenic |
| 973822 | NM_015076.5(CDK19):c.82G>C (p.Gly28Arg) | Pathogenic |
| 973825 | NM_015076.5(CDK19):c.83G>C (p.Gly28Ala) | Likely pathogenic |
SpliceAI
1096 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 6:110887588:TCAGG:T | donor_loss | 1.0000 |
| 6:110887589:CAGG:C | donor_loss | 1.0000 |
| 6:110887590:AGGTA:A | donor_loss | 1.0000 |
| 6:110887591:GGTAA:G | donor_loss | 1.0000 |
| 6:110887592:G:C | donor_loss | 1.0000 |
| 6:110887593:TAAGT:T | donor_loss | 1.0000 |
| 6:110888849:A:AG | acceptor_gain | 1.0000 |
| 6:110888852:T:A | acceptor_gain | 1.0000 |
| 6:110888855:A:AG | acceptor_gain | 1.0000 |
| 6:110888855:AGT:A | acceptor_gain | 1.0000 |
| 6:110888856:G:GT | acceptor_gain | 1.0000 |
| 6:110888856:GT:G | acceptor_gain | 1.0000 |
| 6:110888856:GTG:G | acceptor_gain | 1.0000 |
| 6:110888856:GTGA:G | acceptor_gain | 1.0000 |
| 6:110888983:AG:A | donor_loss | 1.0000 |
| 6:110888984:G:A | donor_loss | 1.0000 |
| 6:110888984:G:GG | donor_gain | 1.0000 |
| 6:110888985:T:G | donor_loss | 1.0000 |
| 6:110890247:A:AG | acceptor_gain | 1.0000 |
| 6:110890250:A:AG | acceptor_gain | 1.0000 |
| 6:110890251:A:G | acceptor_gain | 1.0000 |
| 6:110890272:A:AG | acceptor_gain | 1.0000 |
| 6:110890273:A:G | acceptor_gain | 1.0000 |
| 6:110890323:G:GT | donor_gain | 1.0000 |
| 6:110890357:G:GG | donor_gain | 1.0000 |
| 6:110892295:TTAG:T | acceptor_loss | 1.0000 |
| 6:110892298:G:GA | acceptor_loss | 1.0000 |
| 6:110892298:GGT:G | acceptor_gain | 1.0000 |
| 6:110892432:G:GT | donor_gain | 1.0000 |
| 6:110892439:CTCGT:C | donor_gain | 1.0000 |
AlphaMissense
2249 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 6:110875130:G:A | G9R | 1.000 |
| 6:110875130:G:C | G9R | 1.000 |
| 6:110875130:G:T | G9W | 1.000 |
| 6:110875137:A:T | E11V | 1.000 |
| 6:110875138:G:C | E11D | 1.000 |
| 6:110875138:G:T | E11D | 1.000 |
| 6:110875143:T:C | L13P | 1.000 |
| 6:110875158:T:C | F18S | 1.000 |
| 6:110887512:T:A | W40R | 1.000 |
| 6:110887512:T:C | W40R | 1.000 |
| 6:110887525:T:G | L44W | 1.000 |
| 6:110887540:G:A | C49Y | 1.000 |
| 6:110887541:T:G | C49W | 1.000 |
| 6:110887578:G:C | A62P | 1.000 |
| 6:110887581:T:G | Y63D | 1.000 |
| 6:110887588:T:A | L65H | 1.000 |
| 6:110887588:T:C | L65P | 1.000 |
| 6:110888859:A:T | E67V | 1.000 |
| 6:110888861:A:C | S68R | 1.000 |
| 6:110888862:G:T | S68I | 1.000 |
| 6:110888863:T:A | S68R | 1.000 |
| 6:110888863:T:G | S68R | 1.000 |
| 6:110888864:A:C | S69R | 1.000 |
| 6:110888865:G:T | S69I | 1.000 |
| 6:110888866:C:A | S69R | 1.000 |
| 6:110888866:C:G | S69R | 1.000 |
| 6:110888870:T:C | F71L | 1.000 |
| 6:110888871:T:C | F71S | 1.000 |
| 6:110888871:T:G | F71C | 1.000 |
| 6:110888872:T:A | F71L | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000063460 (6:110843775 G>A,T), RS1000068511 (6:110884913 C>G), RS1000068626 (6:110813041 G>A), RS1000077249 (6:110882252 T>G), RS1000077809 (6:110823937 G>A), RS1000126302 (6:110882128 T>A), RS1000183600 (6:110860304 C>T), RS1000282289 (6:110887796 C>A,T), RS1000282424 (6:110817598 GA>G), RS1000314835 (6:110844405 G>A), RS1000367079 (6:110844597 C>G,T), RS1000370966 (6:110847312 T>G), RS1000376782 (6:110893850 C>T), RS1000421474 (6:110837606 G>T), RS1000437870 (6:110853561 C>A)
Disease associations
OMIM: gene MIM:180980 | disease phenotypes: MIM:618916
GenCC curated gene-disease
Mondo (1): developmental and epileptic encephalopathy, 87 (MONDO:0030059)
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
7 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST006879_15 | Blood metabolite levels | 6.000000e-25 |
| GCST006879_16 | Blood metabolite levels | 5.000000e-08 |
| GCST006879_17 | Blood metabolite levels | 2.000000e-26 |
| GCST006879_23 | Blood metabolite levels | 7.000000e-31 |
| GCST006879_24 | Blood metabolite levels | 3.000000e-25 |
| GCST006879_3 | Blood metabolite levels | 8.000000e-29 |
| GCST006879_4 | Blood metabolite levels | 7.000000e-37 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL4181 (SINGLE PROTEIN)
PharmGKB: 1 entry (VIP=true, CPIC=false)
GtoPdb / IUPHAR curated pharmacology
(IUPHAR/BPS Guide to Pharmacology — expert-curated)
Target class: enzyme — Decarboxylases
Most potent curated ligand interactions (1 total), top 1:
| Ligand | Action | Affinity | Parameter |
|---|---|---|---|
| sardomozide | Inhibition | 8.0 | pIC50 |
Binding affinities (BindingDB)
24 measured of 34 human assays (34 total across all organisms); most potent 24 below. Values come from heterogeneous assays and are not directly comparable.
| Ligand | Measure | Value |
|---|---|---|
| (2R,3R,4S,5R)-2-(6-amino-8-methyl-9H-purin-9-yl)-5-({4-(aminooxy)butylamino}methyl)oxolane-3,4-diol | IC50 | 5 nM |
| (2R,3R,4S,5R)-2-(6-amino-8-methyl-9H-purin-9-yl)-5-({2-(aminooxy)ethylamino}methyl)oxolane-3,4-diol | IC50 | 7 nM |
| (2R,3R,4S,5R)-2-(6-amino-8-hydroxy-9H-purin-9-yl)-5-({4-(aminooxy)butylamino}methyl)oxolane-3,4-diol | IC50 | 11 nM |
| (2R,3R,4S,5R)-2-(6-amino-8-ethyl-9H-purin-9-yl)-5-({4-(aminooxy)butylamino}methyl)oxolane-3,4-diol | IC50 | 15 nM |
| (2R,3R,4S,5R)-2-(6-amino-9H-purin-9-yl)-5-({4-(aminooxy)butylamino}methyl)oxolane-3,4-diol | IC50 | 18 nM |
| (2R,3R,4S,5R)-2-[6-amino-8-(methylamino)-9H-purin-9-yl]-5-({4-(aminooxy)butylamino}methyl)oxolane-3,4-diol | IC50 | 49 nM |
| (2R,3R,4S,5R)-2-(6-amino-9H-purin-9-yl)-5-({2-(aminooxy)ethylamino}methyl)oxolane-3,4-diol | IC50 | 55 nM |
| (2R,3R,4S,5R)-2-[6-amino-8-(methylamino)-9H-purin-9-yl]-5-({2-(aminooxy)ethylamino}methyl)oxolane-3,4-diol | IC50 | 86 nM |
| 3-({[(2R,3S,4R,5R)-5-(6-amino-8-methyl-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methyl}(methyl)amino)propanehydrazide | IC50 | 170 nM |
| 3-({[(2R,3S,4R,5R)-5-(6-amino-8-methyl-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methyl}(methyl)amino)propanamide | IC50 | 400 nM |
| (2R,3R,4S,5R)-2-(6-amino-8-methyl-9H-purin-9-yl)-5-[(dimethylamino)methyl]oxolane-3,4-diol | IC50 | 600 nM |
| 3-({[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methyl}(methyl)amino)propanehydrazide | IC50 | 1500 nM |
| {[(2S,3S,4R,5R)-5-(6-amino-8-methyl-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methyl}dimethylsulfanium chloride | IC50 | 3000 nM |
| 3-({[(2R,3S,4R,5R)-5-(6-amino-8-ethyl-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methyl}(methyl)amino)propanamide | IC50 | 4000 nM |
| 3-({[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methyl}(methyl)amino)propanamide | IC50 | 7000 nM |
| (2R,3R,4S,5R)-2-(6-amino-9H-purin-9-yl)-5-[(dimethylamino)methyl]oxolane-3,4-diol | IC50 | 9000 nM |
| {[(2S,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methyl}dimethylsulfanium chloride | IC50 | 15000 nM |
| 2-({[(2R,3S,4R,5R)-5-(6-amino-8-methyl-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methyl}(methyl)amino)acetohydrazide | IC50 | 31000 nM |
| (2R,3R,4S,5R)-2-(6-amino-8-methyl-9H-purin-9-yl)-5-{[(3-aminopropyl)(methyl)amino]methyl}oxolane-3,4-diol | IC50 | 70000 nM |
| (2R,3R,4S,5R)-2-(6-amino-8-methyl-9H-purin-9-yl)-5-{[(2-aminoethyl)(methyl)amino]methyl}oxolane-3,4-diol | IC50 | 88000 nM |
| 3-({[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methyl}(methyl)amino)-N’-hydroxypropanimidamide | IC50 | 157000 nM |
| (2R,3R,4S,5R)-2-(6-amino-8-ethyl-9H-purin-9-yl)-5-{[(3-aminopropyl)(methyl)amino]methyl}oxolane-3,4-diol | IC50 | 420000 nM |
| (2R,3R,4S,5R)-2-[6-amino-8-(methylamino)-9H-purin-9-yl]-5-{[(3-aminopropyl)(methyl)amino]methyl}oxolane-3,4-diol | IC50 | 440000 nM |
| (2R,3R,4S,5R)-2-(6-amino-9H-purin-9-yl)-5-{[(3-aminopropyl)(methyl)amino]methyl}oxolane-3,4-diol | IC50 | 500000 nM |
ChEMBL bioactivities
21 potent at pChembl≥5 of 38 total, top 20 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 8.30 | IC50 | 5 | nM | CHEMBL517131 |
| 8.15 | IC50 | 7 | nM | CHEMBL510356 |
| 7.96 | IC50 | 11 | nM | CHEMBL461970 |
| 7.82 | IC50 | 15 | nM | CHEMBL461779 |
| 7.75 | IC50 | 18 | nM | CHEMBL516811 |
| 7.31 | IC50 | 49 | nM | CHEMBL460719 |
| 7.26 | IC50 | 55 | nM | CHEMBL461780 |
| 7.07 | IC50 | 86 | nM | CHEMBL453372 |
| 6.77 | IC50 | 170 | nM | CHEMBL517593 |
| 6.40 | IC50 | 400 | nM | CHEMBL462656 |
| 6.22 | IC50 | 600 | nM | CHEMBL516214 |
| 5.82 | IC50 | 1500 | nM | CHEMBL462138 |
| 5.52 | IC50 | 3000 | nM | CHEMBL473134 |
| 5.42 | Ki | 3800 | nM | CHEMBL2115571 |
| 5.40 | IC50 | 4000 | nM | CHEMBL517908 |
| 5.30 | IC50 | 5000 | nM | CHEMBL473336 |
| 5.16 | IC50 | 7000 | nM | CHEMBL461969 |
| 5.14 | Ki | 7200 | nM | CHEMBL3392185 |
| 5.05 | IC50 | 9000 | nM | CHEMBL472733 |
| 5.05 | IC50 | 9000 | nM | CHEMBL3392189 |
PubChem BioAssay actives
33 with measured affinity, of 218 total; 26 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| (2R,3R,4S,5R)-2-(6-amino-8-methylpurin-9-yl)-5-[[4-aminooxybutyl(methyl)amino]methyl]oxolane-3,4-diol | 1798891: AdoMetDC Inhibition Assay from Article 10.1021/jm801126a: “New Insights into the Design of Inhibitors of Human S-Adenosylmethionine Decarboxylase: Studies of Adenine C(8) Substitution in Structural Analogues of S-Adenosylmethionine (dagger).” | ic50 | 0.0050 | uM |
| (2R,3R,4S,5R)-2-(6-amino-8-methylpurin-9-yl)-5-[[4-aminooxybutyl(methyl)amino]methyl]oxolane-3,4-diol;sulfuric acid | 346361: Inhibition of human C-terminal His-tagged AdoMetDC assessed as release of 14CO2 from S-adenosyl-L-[carboxy-14C]methionine | ic50 | 0.0050 | uM |
| (2R,3R,4S,5R)-2-(6-amino-8-methylpurin-9-yl)-5-[[2-aminooxyethyl(methyl)amino]methyl]oxolane-3,4-diol | 1798891: AdoMetDC Inhibition Assay from Article 10.1021/jm801126a: “New Insights into the Design of Inhibitors of Human S-Adenosylmethionine Decarboxylase: Studies of Adenine C(8) Substitution in Structural Analogues of S-Adenosylmethionine (dagger).” | ic50 | 0.0070 | uM |
| (2R,3R,4S,5R)-2-(6-amino-8-methylpurin-9-yl)-5-[[2-aminooxyethyl(methyl)amino]methyl]oxolane-3,4-diol;sulfuric acid | 346361: Inhibition of human C-terminal His-tagged AdoMetDC assessed as release of 14CO2 from S-adenosyl-L-[carboxy-14C]methionine | ic50 | 0.0070 | uM |
| 6-amino-9-[(2R,3R,4S,5R)-5-[[4-aminooxybutyl(methyl)amino]methyl]-3,4-dihydroxyoxolan-2-yl]-7H-purin-8-one | 1798891: AdoMetDC Inhibition Assay from Article 10.1021/jm801126a: “New Insights into the Design of Inhibitors of Human S-Adenosylmethionine Decarboxylase: Studies of Adenine C(8) Substitution in Structural Analogues of S-Adenosylmethionine (dagger).” | ic50 | 0.0110 | uM |
| 6-amino-9-[(2R,3R,4S,5R)-5-[[4-aminooxybutyl(methyl)amino]methyl]-3,4-dihydroxyoxolan-2-yl]-7H-purin-8-one;sulfuric acid | 346361: Inhibition of human C-terminal His-tagged AdoMetDC assessed as release of 14CO2 from S-adenosyl-L-[carboxy-14C]methionine | ic50 | 0.0110 | uM |
| (2R,3R,4S,5R)-2-(6-amino-8-ethylpurin-9-yl)-5-[[4-aminooxybutyl(methyl)amino]methyl]oxolane-3,4-diol | 1798891: AdoMetDC Inhibition Assay from Article 10.1021/jm801126a: “New Insights into the Design of Inhibitors of Human S-Adenosylmethionine Decarboxylase: Studies of Adenine C(8) Substitution in Structural Analogues of S-Adenosylmethionine (dagger).” | ic50 | 0.0150 | uM |
| (2R,3R,4S,5R)-2-(6-amino-8-ethylpurin-9-yl)-5-[[4-aminooxybutyl(methyl)amino]methyl]oxolane-3,4-diol;sulfuric acid | 346361: Inhibition of human C-terminal His-tagged AdoMetDC assessed as release of 14CO2 from S-adenosyl-L-[carboxy-14C]methionine | ic50 | 0.0150 | uM |
| (2R,3S,4R,5R)-2-[[4-aminooxybutyl(methyl)amino]methyl]-5-(6-aminopurin-9-yl)oxolane-3,4-diol;sulfuric acid | 346361: Inhibition of human C-terminal His-tagged AdoMetDC assessed as release of 14CO2 from S-adenosyl-L-[carboxy-14C]methionine | ic50 | 0.0180 | uM |
| (2R,3S,4R,5R)-2-[[4-aminooxybutyl(methyl)amino]methyl]-5-(6-aminopurin-9-yl)oxolane-3,4-diol | 1798891: AdoMetDC Inhibition Assay from Article 10.1021/jm801126a: “New Insights into the Design of Inhibitors of Human S-Adenosylmethionine Decarboxylase: Studies of Adenine C(8) Substitution in Structural Analogues of S-Adenosylmethionine (dagger).” | ic50 | 0.0180 | uM |
| (2R,3R,4S,5R)-2-[6-amino-8-(methylamino)purin-9-yl]-5-[[4-aminooxybutyl(methyl)amino]methyl]oxolane-3,4-diol | 1798891: AdoMetDC Inhibition Assay from Article 10.1021/jm801126a: “New Insights into the Design of Inhibitors of Human S-Adenosylmethionine Decarboxylase: Studies of Adenine C(8) Substitution in Structural Analogues of S-Adenosylmethionine (dagger).” | ic50 | 0.0490 | uM |
| (2R,3R,4S,5R)-2-[6-amino-8-(methylamino)purin-9-yl]-5-[[4-aminooxybutyl(methyl)amino]methyl]oxolane-3,4-diol;sulfuric acid | 346361: Inhibition of human C-terminal His-tagged AdoMetDC assessed as release of 14CO2 from S-adenosyl-L-[carboxy-14C]methionine | ic50 | 0.0490 | uM |
| (2R,3S,4R,5R)-2-[[2-aminooxyethyl(methyl)amino]methyl]-5-(6-aminopurin-9-yl)oxolane-3,4-diol | 1798891: AdoMetDC Inhibition Assay from Article 10.1021/jm801126a: “New Insights into the Design of Inhibitors of Human S-Adenosylmethionine Decarboxylase: Studies of Adenine C(8) Substitution in Structural Analogues of S-Adenosylmethionine (dagger).” | ic50 | 0.0550 | uM |
| (2R,3R,4S,5R)-2-[6-amino-8-(methylamino)purin-9-yl]-5-[[2-aminooxyethyl(methyl)amino]methyl]oxolane-3,4-diol | 1798891: AdoMetDC Inhibition Assay from Article 10.1021/jm801126a: “New Insights into the Design of Inhibitors of Human S-Adenosylmethionine Decarboxylase: Studies of Adenine C(8) Substitution in Structural Analogues of S-Adenosylmethionine (dagger).” | ic50 | 0.0860 | uM |
| (2R,3R,4S,5R)-2-[6-amino-8-(methylamino)purin-9-yl]-5-[[2-aminooxyethyl(methyl)amino]methyl]oxolane-3,4-diol;sulfuric acid | 346361: Inhibition of human C-terminal His-tagged AdoMetDC assessed as release of 14CO2 from S-adenosyl-L-[carboxy-14C]methionine | ic50 | 0.0860 | uM |
| 3-[[(2R,3S,4R,5R)-5-(6-amino-8-methylpurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methyl-methylamino]propanehydrazide | 1798891: AdoMetDC Inhibition Assay from Article 10.1021/jm801126a: “New Insights into the Design of Inhibitors of Human S-Adenosylmethionine Decarboxylase: Studies of Adenine C(8) Substitution in Structural Analogues of S-Adenosylmethionine (dagger).” | ic50 | 0.1700 | uM |
| 3-[[(2R,3S,4R,5R)-5-(6-amino-8-methylpurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methyl-methylamino]propanamide | 1798891: AdoMetDC Inhibition Assay from Article 10.1021/jm801126a: “New Insights into the Design of Inhibitors of Human S-Adenosylmethionine Decarboxylase: Studies of Adenine C(8) Substitution in Structural Analogues of S-Adenosylmethionine (dagger).” | ic50 | 0.4000 | uM |
| (2R,3R,4S,5R)-2-(6-amino-8-methylpurin-9-yl)-5-[(dimethylamino)methyl]oxolane-3,4-diol | 1798891: AdoMetDC Inhibition Assay from Article 10.1021/jm801126a: “New Insights into the Design of Inhibitors of Human S-Adenosylmethionine Decarboxylase: Studies of Adenine C(8) Substitution in Structural Analogues of S-Adenosylmethionine (dagger).” | ic50 | 0.6000 | uM |
| 3-[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methyl-methylamino]propanehydrazide | 1798891: AdoMetDC Inhibition Assay from Article 10.1021/jm801126a: “New Insights into the Design of Inhibitors of Human S-Adenosylmethionine Decarboxylase: Studies of Adenine C(8) Substitution in Structural Analogues of S-Adenosylmethionine (dagger).” | ic50 | 1.5000 | uM |
| [(2S,3S,4R,5R)-5-(6-amino-8-methylpurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methyl-dimethylsulfanium | 1798891: AdoMetDC Inhibition Assay from Article 10.1021/jm801126a: “New Insights into the Design of Inhibitors of Human S-Adenosylmethionine Decarboxylase: Studies of Adenine C(8) Substitution in Structural Analogues of S-Adenosylmethionine (dagger).” | ic50 | 3.0000 | uM |
| [(2S,3S,4R,5R)-5-(6-amino-8-methylpurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methyl-dimethylsulfanium chloride | 346361: Inhibition of human C-terminal His-tagged AdoMetDC assessed as release of 14CO2 from S-adenosyl-L-[carboxy-14C]methionine | ic50 | 3.0000 | uM |
| 3-[[(2R,3S,4R,5R)-5-(6-amino-8-ethylpurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methyl-methylamino]propanamide | 1798891: AdoMetDC Inhibition Assay from Article 10.1021/jm801126a: “New Insights into the Design of Inhibitors of Human S-Adenosylmethionine Decarboxylase: Studies of Adenine C(8) Substitution in Structural Analogues of S-Adenosylmethionine (dagger).” | ic50 | 4.0000 | uM |
| [(2S,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methyl-dimethylsulfanium chloride | 346361: Inhibition of human C-terminal His-tagged AdoMetDC assessed as release of 14CO2 from S-adenosyl-L-[carboxy-14C]methionine | ic50 | 5.0000 | uM |
| 3-[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methyl-methylamino]propanamide | 1798891: AdoMetDC Inhibition Assay from Article 10.1021/jm801126a: “New Insights into the Design of Inhibitors of Human S-Adenosylmethionine Decarboxylase: Studies of Adenine C(8) Substitution in Structural Analogues of S-Adenosylmethionine (dagger).” | ic50 | 7.0000 | uM |
| 3-[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methyl-methylamino]propanamide;sulfuric acid | 346361: Inhibition of human C-terminal His-tagged AdoMetDC assessed as release of 14CO2 from S-adenosyl-L-[carboxy-14C]methionine | ic50 | 7.0000 | uM |
| (2R,3R,4S,5R)-2-(6-aminopurin-9-yl)-5-[(dimethylamino)methyl]oxolane-3,4-diol | 1798891: AdoMetDC Inhibition Assay from Article 10.1021/jm801126a: “New Insights into the Design of Inhibitors of Human S-Adenosylmethionine Decarboxylase: Studies of Adenine C(8) Substitution in Structural Analogues of S-Adenosylmethionine (dagger).” | ic50 | 9.0000 | uM |
CTD chemical–gene interactions
65 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| sodium arsenite | affects methylation, decreases expression | 3 |
| 7,8-Dihydro-7,8-dihydroxybenzo(a)pyrene 9,10-oxide | decreases expression | 3 |
| Cadmium Chloride | decreases expression, increases abundance, increases expression | 3 |
| cobaltous chloride | decreases expression | 2 |
| Resveratrol | decreases activity, affects cotreatment, increases expression | 2 |
| Acetaminophen | increases expression | 2 |
| Estradiol | increases expression, increases reaction | 2 |
| Hydrogen Peroxide | affects expression | 2 |
| Nickel | increases expression | 2 |
| Tobacco Smoke Pollution | increases expression | 2 |
| Tretinoin | decreases expression | 2 |
| Valproic Acid | decreases expression, increases expression | 2 |
| Aflatoxin B1 | affects expression, decreases methylation, increases expression | 2 |
| aristolochic acid I | decreases expression | 1 |
| FR900359 | increases phosphorylation | 1 |
| dicrotophos | decreases expression | 1 |
| bismuth tripotassium dicitrate | increases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| alpha-pinene | decreases expression, increases abundance, affects cotreatment | 1 |
| titanium dioxide | increases methylation | 1 |
| beta-lapachone | increases expression | 1 |
| afimoxifene | decreases reaction, increases expression | 1 |
| perfluorooctanoic acid | decreases expression | 1 |
| 2,3-bis(3’-hydroxybenzyl)butyrolactone | affects cotreatment, increases expression | 1 |
| 4-aminophenylarsenoxide | affects binding, decreases reaction | 1 |
| methacrylaldehyde | affects cotreatment, decreases expression, increases abundance | 1 |
| 3,3’,4,5’-tetrahydroxystilbene | decreases activity | 1 |
| beta-methylcholine | affects expression | 1 |
| bicalutamide | increases expression | 1 |
| tamibarotene | decreases expression | 1 |
ChEMBL screening assays
39 unique, capped per target: 39 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL1653935 | Binding | Ratio of Kinact to Kiapp for human AdoMetDC expressed in Escherichia coli | Novel S-adenosylmethionine decarboxylase inhibitors for the treatment of human African trypanosomiasis. — Antimicrob Agents Chemother |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): developmental and epileptic encephalopathy, 87