AMMECR1-IT1

Summary

AMMECR1-IT1 (AMMECR1 intronic transcript 1, HGNC:41306) is a long non-coding RNA gene on chromosome Xq23.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:41306
Approved symbol	AMMECR1-IT1
Name	AMMECR1 intronic transcript 1
Location	Xq23
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000224142
Ensembl biotype	lncRNA
Entrez	100874352
RNAcentral	URS00005FEBAC — lncRNA, 561 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000418848

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000418848 — 2 exons

Exon	Start	End
ENSE00001709479	110306747	110307221
ENSE00001796443	110305420	110305505

Expression profiles

Bgee: expression breadth ubiquitous, 105 present calls, max score 77.72.

Top tissues by expression

105 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
colonic epithelium	UBERON:0000397	77.72	gold quality
sural nerve	UBERON:0015488	74.68	gold quality
bone marrow cell	CL:0002092	66.05	silver quality
tonsil	UBERON:0002372	62.95	silver quality
skeletal muscle tissue	UBERON:0001134	61.61	silver quality
ganglionic eminence	UBERON:0004023	60.73	gold quality
bone marrow	UBERON:0002371	59.28	gold quality
endometrium	UBERON:0001295	56.90	gold quality
monocyte	CL:0000576	55.64	gold quality
cortex of kidney	UBERON:0001225	55.21	gold quality
placenta	UBERON:0001987	55.21	gold quality
gall bladder	UBERON:0002110	54.12	gold quality
blood	UBERON:0000178	53.15	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	52.91	gold quality
right ovary	UBERON:0002118	52.69	gold quality
lymph node	UBERON:0000029	52.58	gold quality
islet of Langerhans	UBERON:0000006	52.35	gold quality
calcaneal tendon	UBERON:0003701	52.00	silver quality
urinary bladder	UBERON:0001255	51.83	gold quality
primary visual cortex	UBERON:0002436	51.77	gold quality
muscle of leg	UBERON:0001383	51.40	gold quality
gastrocnemius	UBERON:0001388	51.16	gold quality
prefrontal cortex	UBERON:0000451	51.04	gold quality
adrenal tissue	UBERON:0018303	50.60	silver quality
duodenum	UBERON:0002114	48.46	silver quality
liver	UBERON:0002107	47.57	silver quality
heart left ventricle	UBERON:0002084	47.53	gold quality
apex of heart	UBERON:0002098	47.24	gold quality
left uterine tube	UBERON:0001303	46.94	gold quality
corpus callosum	UBERON:0002336	46.92	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.44

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.