ANKIB1
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Also known as DKFZP434A0225KIAA1386
Summary
ANKIB1 (ankyrin repeat and IBR domain containing 1, HGNC:22215) is a protein-coding gene on chromosome 7q21.2, encoding Ankyrin repeat and IBR domain-containing protein 1 (Q9P2G1). Might act as an E3 ubiquitin-protein ligase, or as part of E3 complex, which accepts ubiquitin from specific E2 ubiquitin-conjugating enzymes and then transfers it to substrates.
Predicted to enable ubiquitin conjugating enzyme binding activity and ubiquitin protein ligase activity. Predicted to be involved in ubiquitin-dependent protein catabolic process. Predicted to be part of ubiquitin ligase complex. Predicted to be active in cytoplasm.
Source: NCBI Gene 54467 — RefSeq curated summary.
At a glance
- GWAS associations: 2
- Clinical variants (ClinVar): 135 total
- MANE Select transcript:
NM_019004
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:22215 |
| Approved symbol | ANKIB1 |
| Name | ankyrin repeat and IBR domain containing 1 |
| Location | 7q21.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | DKFZP434A0225, KIAA1386 |
| Ensembl gene | ENSG00000001629 |
| Ensembl biotype | protein_coding |
| OMIM | 620069 |
| Entrez | 54467 |
Gene structure
Transcript identifiers
Ensembl transcripts: 15 — 10 protein_coding, 3 nonsense_mediated_decay, 1 retained_intron, 1 protein_coding_CDS_not_defined
ENST00000265742, ENST00000413588, ENST00000422095, ENST00000439883, ENST00000442183, ENST00000465883, ENST00000486698, ENST00000908966, ENST00000908967, ENST00000908968, ENST00000908969, ENST00000908970, ENST00000927528, ENST00000927529, ENST00000927530
RefSeq mRNA: 1 — MANE Select: NM_019004
NM_019004
CCDS: CCDS47639
Canonical transcript exons
ENST00000265742 — 20 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000434751 | 92307359 | 92307656 |
| ENSE00000705085 | 92294889 | 92295166 |
| ENSE00000705124 | 92319330 | 92319512 |
| ENSE00000705130 | 92343024 | 92343232 |
| ENSE00000705159 | 92344978 | 92345066 |
| ENSE00000705178 | 92371477 | 92371607 |
| ENSE00000877420 | 92392241 | 92392292 |
| ENSE00000877426 | 92362185 | 92362273 |
| ENSE00001132714 | 92245974 | 92246519 |
| ENSE00001286463 | 92398212 | 92401383 |
| ENSE00003462574 | 92327783 | 92327900 |
| ENSE00003465330 | 92387798 | 92387884 |
| ENSE00003475526 | 92387975 | 92388041 |
| ENSE00003479192 | 92386509 | 92386643 |
| ENSE00003488658 | 92391166 | 92391344 |
| ENSE00003499530 | 92389971 | 92390116 |
| ENSE00003520877 | 92396365 | 92396476 |
| ENSE00003540495 | 92350950 | 92351094 |
| ENSE00003604159 | 92397723 | 92397859 |
| ENSE00003614924 | 92352476 | 92352642 |
Expression profiles
Bgee: expression breadth ubiquitous, 261 present calls, max score 98.77.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 16.5034 / max 217.0966, expressed in 1810 samples.
FANTOM5 promoters (5 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 79518 | 10.7268 | 1793 |
| 79519 | 3.2542 | 1427 |
| 79520 | 1.9200 | 931 |
| 79521 | 0.4790 | 184 |
| 79522 | 0.1233 | 46 |
Top tissues by expression
261 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| corpus callosum | UBERON:0002336 | 98.77 | gold quality |
| calcaneal tendon | UBERON:0003701 | 98.60 | gold quality |
| kidney epithelium | UBERON:0004819 | 97.75 | gold quality |
| inferior vagus X ganglion | UBERON:0005363 | 97.29 | gold quality |
| medial globus pallidus | UBERON:0002477 | 96.73 | gold quality |
| globus pallidus | UBERON:0001875 | 96.64 | gold quality |
| subthalamic nucleus | UBERON:0001906 | 96.03 | gold quality |
| lateral globus pallidus | UBERON:0002476 | 95.78 | gold quality |
| substantia nigra pars reticulata | UBERON:0001966 | 95.51 | gold quality |
| superior vestibular nucleus | UBERON:0007227 | 95.40 | gold quality |
| medulla oblongata | UBERON:0001896 | 95.33 | gold quality |
| dorsal plus ventral thalamus | UBERON:0001897 | 95.22 | gold quality |
| pancreatic ductal cell | CL:0002079 | 95.16 | silver quality |
| tendon | UBERON:0000043 | 95.02 | gold quality |
| nipple | UBERON:0002030 | 94.99 | gold quality |
| ventral tegmental area | UBERON:0002691 | 94.78 | gold quality |
| substantia nigra pars compacta | UBERON:0001965 | 94.17 | gold quality |
| secondary oocyte | CL:0000655 | 93.63 | gold quality |
| adrenal tissue | UBERON:0018303 | 93.54 | gold quality |
| mucosa of paranasal sinus | UBERON:0005030 | 93.25 | gold quality |
| Brodmann (1909) area 46 | UBERON:0006483 | 93.05 | gold quality |
| pons | UBERON:0000988 | 92.92 | gold quality |
| bone marrow cell | CL:0002092 | 92.70 | gold quality |
| renal medulla | UBERON:0000362 | 92.32 | gold quality |
| ileal mucosa | UBERON:0000331 | 92.29 | gold quality |
| lower lobe of lung | UBERON:0008949 | 92.26 | gold quality |
| upper arm skin | UBERON:0004263 | 92.20 | gold quality |
| corpus epididymis | UBERON:0004359 | 92.10 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 91.90 | gold quality |
| parietal lobe | UBERON:0001872 | 91.88 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 6.00 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
280 targeting ANKIB1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-340-5P | 100.00 | 72.50 | 4437 |
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-126-5P | 100.00 | 72.71 | 3180 |
| HSA-MIR-3689D | 100.00 | 66.14 | 1181 |
| HSA-MIR-6851-5P | 100.00 | 65.63 | 1294 |
| HSA-MIR-1277-5P | 100.00 | 73.95 | 5056 |
| HSA-MIR-4795-3P | 100.00 | 74.62 | 4024 |
| HSA-MIR-4282 | 99.99 | 75.36 | 6408 |
| HSA-MIR-223-3P | 99.99 | 70.14 | 1140 |
| HSA-MIR-3662 | 99.99 | 73.82 | 5684 |
| HSA-MIR-19A-3P | 99.98 | 75.33 | 2762 |
| HSA-MIR-19B-3P | 99.98 | 75.44 | 2754 |
| HSA-MIR-548N | 99.98 | 71.94 | 4170 |
| HSA-MIR-25-3P | 99.98 | 74.60 | 1817 |
| HSA-MIR-32-5P | 99.98 | 75.21 | 1964 |
| HSA-MIR-363-3P | 99.98 | 74.72 | 1821 |
| HSA-MIR-367-3P | 99.98 | 74.83 | 1819 |
| HSA-MIR-92A-3P | 99.98 | 75.21 | 1960 |
| HSA-MIR-92B-3P | 99.98 | 75.25 | 1955 |
| HSA-MIR-5696 | 99.98 | 72.36 | 4487 |
| HSA-MIR-4482-3P | 99.98 | 72.50 | 3147 |
| HSA-MIR-103A-3P | 99.98 | 69.14 | 1595 |
| HSA-MIR-107 | 99.98 | 69.14 | 1595 |
| HSA-MIR-520D-5P | 99.98 | 73.34 | 4883 |
| HSA-MIR-524-5P | 99.98 | 73.43 | 4882 |
| HSA-MIR-548P | 99.98 | 72.25 | 3784 |
| HSA-LET-7F-2-3P | 99.98 | 70.98 | 2588 |
| HSA-MIR-1185-1-3P | 99.98 | 71.04 | 2593 |
| HSA-MIR-1185-2-3P | 99.98 | 71.04 | 2593 |
| HSA-MIR-27A-3P | 99.98 | 72.13 | 2955 |
Literature-anchored findings (GeneRIF, showing 2)
- circCsnk1g3- and circAnkib1-regulated interferon responses in sarcoma promote tumorigenesis by shaping the immune microenvironment. (PMID:36433954)
- E3 ubiquitin ligase ANKIB1 attenuates antiviral immune responses by promoting K48-linked polyubiquitination of MAVS. (PMID:39213157)
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | ankib1b | ENSDARG00000076829 |
| mus_musculus | Ankib1 | ENSMUSG00000040351 |
| rattus_norvegicus | Ankib1 | ENSRNOG00000005502 |
| caenorhabditis_elegans | WBGENE00015926 | |
| caenorhabditis_elegans | WBGENE00021721 |
Paralogs (9): RNF14 (ENSG00000013561), RNF19A (ENSG00000034677), RNF19B (ENSG00000116514), RNF144B (ENSG00000137393), RNF217 (ENSG00000146373), RNF144A (ENSG00000151692), ARIH1 (ENSG00000166233), ARIH2 (ENSG00000177479), PRKN (ENSG00000185345)
Protein
Protein identifiers
Ankyrin repeat and IBR domain-containing protein 1 — Q9P2G1 (reviewed: Q9P2G1)
All UniProt accessions (5): C9JZ63, H7C0S0, H7C2L9, H7C2V2, Q9P2G1
UniProt curated annotations — full annotation on UniProt →
Function. Might act as an E3 ubiquitin-protein ligase, or as part of E3 complex, which accepts ubiquitin from specific E2 ubiquitin-conjugating enzymes and then transfers it to substrates.
Domain organisation. Members of the RBR family are atypical E3 ligases. They interact with the E2 conjugating enzyme UBE2L3 and function like HECT-type E3 enzymes: they bind E2s via the first RING domain, but require an obligate trans-thiolation step during the ubiquitin transfer, requiring a conserved cysteine residue in the second RING domain.
Similarity. Belongs to the RBR family.
RefSeq proteins (1): NP_061877* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001841 | Znf_RING | Domain |
| IPR002110 | Ankyrin_rpt | Repeat |
| IPR002867 | IBR_dom | Domain |
| IPR003903 | UIM_dom | Conserved_site |
| IPR013083 | Znf_RING/FYVE/PHD | Homologous_superfamily |
| IPR031127 | E3_UB_ligase_RBR | Family |
| IPR036770 | Ankyrin_rpt-contain_sf | Homologous_superfamily |
| IPR044066 | TRIAD_supradom | Domain |
| IPR045840 | Ariadne | Domain |
| IPR047563 | RING-HC_RBR_ANKIB1 | Domain |
| IPR047564 | Rcat_RBR_ANKIB1 | Domain |
Pfam: PF00023, PF01485, PF12796, PF19422, PF22191
UniProt features (45 total): binding site 20, region of interest 6, compositionally biased region 3, modified residue 3, zinc finger region 3, repeat 2, initiator methionine 1, chain 1, coiled-coil region 1, active site 1, domain 1, lipid moiety-binding region 1, sequence variant 1, sequence conflict 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q9P2G1-F1 | 66.52 | 0.27 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (1): 532
Ligand- & substrate-binding residues (20): 333; 336; 351; 353; 356; 359; 378; 383; 465; 468; 473; 478 …
Post-translational modifications (4): 737, 884, 911, 2
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 197 (showing top):
GOBP_MACROMOLECULE_CATABOLIC_PROCESS, PATIL_LIVER_CANCER, GOBP_POST_TRANSLATIONAL_PROTEIN_MODIFICATION, DODD_NASOPHARYNGEAL_CARCINOMA_UP, GOBP_PROTEIN_CATABOLIC_PROCESS, GOCC_TRANSFERASE_COMPLEX, GOBP_PROTEOLYSIS, GOMF_ACYLTRANSFERASE_ACTIVITY, GOCC_UBIQUITIN_LIGASE_COMPLEX, GOMF_AMINOACYLTRANSFERASE_ACTIVITY, GOMF_UBIQUITIN_LIKE_PROTEIN_CONJUGATING_ENZYME_BINDING, GOMF_UBIQUITIN_LIKE_PROTEIN_LIGASE_ACTIVITY, YOSHIMURA_MAPK8_TARGETS_DN, ATF6_TARGET_GENES, DLX4_TARGET_GENES
GO Biological Process (2): ubiquitin-dependent protein catabolic process (GO:0006511), protein ubiquitination (GO:0016567)
GO Molecular Function (7): zinc ion binding (GO:0008270), ubiquitin conjugating enzyme binding (GO:0031624), ubiquitin protein ligase activity (GO:0061630), ubiquitin-protein transferase activity (GO:0004842), protein binding (GO:0005515), transferase activity (GO:0016740), metal ion binding (GO:0046872)
GO Cellular Component (2): ubiquitin ligase complex (GO:0000151), cytoplasm (GO:0005737)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| protein ubiquitination | 1 |
| modification-dependent protein catabolic process | 1 |
| protein modification by small protein conjugation | 1 |
| transition metal ion binding | 1 |
| ubiquitin-like protein conjugating enzyme binding | 1 |
| ubiquitin-protein transferase activity | 1 |
| ubiquitin-like protein ligase activity | 1 |
| ubiquitin-like protein transferase activity | 1 |
| binding | 1 |
| catalytic activity | 1 |
| cation binding | 1 |
| intracellular protein-containing complex | 1 |
| transferase complex | 1 |
| intracellular anatomical structure | 1 |
| cellular anatomical structure | 1 |
Protein interactions and networks
STRING
812 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| ANKIB1 | CWF19L2 | Q2TBE0 | 543 |
| ANKIB1 | FNIP2 | Q9P278 | 534 |
| ANKIB1 | CUL7 | Q14999 | 516 |
| ANKIB1 | RNF216 | Q9NWF9 | 492 |
| ANKIB1 | RBM48 | Q5RL73 | 477 |
| ANKIB1 | ZFP62 | Q8NB50 | 463 |
| ANKIB1 | BIRC7 | Q96CA5 | 452 |
| ANKIB1 | LRRD1 | A4D1F6 | 431 |
| ANKIB1 | GATAD1 | Q8WUU5 | 399 |
| ANKIB1 | SPIDR | Q14159 | 383 |
| ANKIB1 | SUSD1 | Q6UWL2 | 378 |
| ANKIB1 | RIPOR3 | Q96MK2 | 377 |
| ANKIB1 | STK35 | Q8TDR2 | 369 |
| ANKIB1 | Q08EI0 | Q08EI0 | 368 |
| ANKIB1 | DYNLRB2 | Q8TF09 | 359 |
IntAct
8 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| ARRDC4 | WWP2 | psi-mi:“MI:0914”(association) | 0.530 |
| KCNE3 | RIOK3 | psi-mi:“MI:0914”(association) | 0.530 |
| NR4A1 | ANKIB1 | psi-mi:“MI:0915”(physical association) | 0.520 |
| ANKIB1 | TSC1 | psi-mi:“MI:0915”(physical association) | 0.370 |
| ANKIB1 | KPNA2 | psi-mi:“MI:0915”(physical association) | 0.370 |
| ABCD4 | psi-mi:“MI:0914”(association) | 0.350 | |
| ANKIB1 | NR4A1 | psi-mi:“MI:0915”(physical association) | 0.000 |
BioGRID (26): ANKIB1 (Affinity Capture-RNA), ANKIB1 (Reconstituted Complex), ANKIB1 (Affinity Capture-MS), ANKIB1 (Affinity Capture-RNA), ANKIB1 (Affinity Capture-MS), ANKIB1 (Reconstituted Complex), ANKIB1 (Affinity Capture-MS), ANKIB1 (Two-hybrid), ANKIB1 (Protein-peptide), ANKIB1 (Affinity Capture-MS), ANKIB1 (Reconstituted Complex), ANKIB1 (Affinity Capture-MS), DMD (Cross-Linking-MS (XL-MS)), ANKIB1 (Affinity Capture-Western), MAVS (Affinity Capture-Western)
ESM2 similar proteins: A0A1D5PXA5, O18784, O35119, O35433, O62852, P0C550, P19334, P34586, P34641, P48994, P48995, P69744, P79100, P97414, Q0JKV1, Q12324, Q5ICL9, Q61056, Q697L1, Q6R5A3, Q6RX08, Q704Y3, Q875M2, Q8GXE6, Q8K424, Q8NER1, Q8NET8, Q91WD2, Q96L42, Q9EPK8, Q9ERZ8, Q9H1D0, Q9HBA0, Q9JIP0, Q9MYV9, Q9NQA5, Q9P2G1, Q9QUQ5, Q9QX01, Q9QX29
Diamond homologs: O01965, Q1L8G6, Q54CX4, Q5UQ35, Q6T486, Q6ZPS6, Q84RR0, Q94981, Q9LVW9, Q9LVX0, Q9P2G1, Q9SKC3, Q9SKC4, A2A7Q9, A2VEA3, A4IIY1, B1H1E4, P0C8K8, P36113, P50636, Q08B84, Q1L8L6, Q2VJ60, Q32NS4, Q6NW85, Q6PFJ9, Q6ZMZ0, Q8BKD6, Q8L829, Q8W468, Q9JI90, Q9NV58, Q9P3U4, Q9SKC2, Q9UBS8, Q9Y4X5, Q9Z1K5, D3YYI7, O76924, O95376
SIGNOR signaling
1 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| Ub:E2 | “up-regulates activity” | ANKIB1 | ubiquitination |
Disease & clinical
Clinical variants and AI predictions
ClinVar
135 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 102 |
| Likely benign | 4 |
| Benign | 3 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
3356 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 7:92246382:G:GT | donor_gain | 1.0000 |
| 7:92294884:A:AG | acceptor_gain | 1.0000 |
| 7:92294885:T:G | acceptor_gain | 1.0000 |
| 7:92294887:A:AG | acceptor_gain | 1.0000 |
| 7:92294887:AGAAT:A | acceptor_gain | 1.0000 |
| 7:92294888:G:GA | acceptor_gain | 1.0000 |
| 7:92294888:G:T | acceptor_loss | 1.0000 |
| 7:92294888:GA:G | acceptor_gain | 1.0000 |
| 7:92294888:GAA:G | acceptor_gain | 1.0000 |
| 7:92294888:GAAT:G | acceptor_gain | 1.0000 |
| 7:92294888:GAATG:G | acceptor_gain | 1.0000 |
| 7:92295162:TTAGG:T | donor_gain | 1.0000 |
| 7:92295164:AGGG:A | donor_loss | 1.0000 |
| 7:92295165:GG:G | donor_gain | 1.0000 |
| 7:92295166:GG:G | donor_gain | 1.0000 |
| 7:92295167:G:GA | donor_loss | 1.0000 |
| 7:92295167:G:GG | donor_gain | 1.0000 |
| 7:92307354:TTTA:T | acceptor_loss | 1.0000 |
| 7:92307357:A:AG | acceptor_gain | 1.0000 |
| 7:92307357:AG:A | acceptor_gain | 1.0000 |
| 7:92307358:G:A | acceptor_loss | 1.0000 |
| 7:92307358:G:GA | acceptor_gain | 1.0000 |
| 7:92307358:GG:G | acceptor_gain | 1.0000 |
| 7:92307358:GGA:G | acceptor_gain | 1.0000 |
| 7:92307358:GGAC:G | acceptor_gain | 1.0000 |
| 7:92307358:GGACT:G | acceptor_gain | 1.0000 |
| 7:92307653:AGAGG:A | donor_loss | 1.0000 |
| 7:92307654:GAGG:G | donor_loss | 1.0000 |
| 7:92307655:AGG:A | donor_loss | 1.0000 |
| 7:92307656:GG:G | donor_loss | 1.0000 |
AlphaMissense
7231 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 7:92295001:T:C | F8S | 1.000 |
| 7:92295004:G:C | R9P | 1.000 |
| 7:92295013:T:A | L12H | 1.000 |
| 7:92295013:T:C | L12P | 1.000 |
| 7:92307398:T:A | N76K | 1.000 |
| 7:92307398:T:G | N76K | 1.000 |
| 7:92307628:C:A | A153D | 1.000 |
| 7:92319385:C:A | P181H | 1.000 |
| 7:92319397:C:A | A185D | 1.000 |
| 7:92319433:T:C | L197P | 1.000 |
| 7:92327811:T:C | L233P | 1.000 |
| 7:92327823:A:T | K237I | 1.000 |
| 7:92327824:A:C | K237N | 1.000 |
| 7:92327824:A:T | K237N | 1.000 |
| 7:92327832:T:C | L240P | 1.000 |
| 7:92327846:G:C | A245P | 1.000 |
| 7:92327856:T:C | L248P | 1.000 |
| 7:92327877:C:A | A255D | 1.000 |
| 7:92327889:T:A | L259H | 1.000 |
| 7:92327889:T:C | L259P | 1.000 |
| 7:92343026:T:A | W264R | 1.000 |
| 7:92343026:T:C | W264R | 1.000 |
| 7:92343027:G:C | W264S | 1.000 |
| 7:92343028:G:C | W264C | 1.000 |
| 7:92343028:G:T | W264C | 1.000 |
| 7:92343053:T:A | W273R | 1.000 |
| 7:92343053:T:C | W273R | 1.000 |
| 7:92344978:T:C | C333R | 1.000 |
| 7:92344979:G:A | C333Y | 1.000 |
| 7:92344980:T:G | C333W | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000024607 (7:92322985 T>C), RS1000039475 (7:92355724 C>T), RS1000043511 (7:92368311 AAG>A), RS1000050623 (7:92281943 A>G), RS1000070054 (7:92370880 G>C), RS1000098096 (7:92348816 A>G), RS1000128633 (7:92300786 A>G), RS1000132944 (7:92256818 C>T), RS1000148529 (7:92318266 A>G), RS1000185485 (7:92269755 A>G), RS1000221807 (7:92284650 T>C), RS1000238789 (7:92361824 T>C,G), RS1000263702 (7:92308223 C>T), RS1000294237 (7:92301225 G>A), RS1000312229 (7:92361669 AT>A,ATT)
Disease associations
OMIM: gene MIM:620069 | disease phenotypes: MIM:600419
GenCC curated gene-disease
Mondo (2): cerebral cavernous malformation (MONDO:0000820), angiokeratoma corporis diffusum with arteriovenous fistulas (MONDO:0010885)
Orphanet (2): Familial cerebral cavernous malformation (Orphanet:221061), NON RARE IN EUROPE: Cerebral cavernous malformations (Orphanet:164)
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
2 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST006396_10 | Disrupted circadian rhythm (low relative amplitude of rest-activity cycles) | 2.000000e-06 |
| GCST90013420_6 | Ambidextrousness | 5.000000e-10 |
EFO canonical traits (1, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0009902 | handedness |
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| C563940 | Angiokeratoma Corporis Diffusum with Arteriovenous Fistulas (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
36 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| sodium arsenite | decreases expression, increases abundance, increases expression | 2 |
| Air Pollutants | increases abundance, decreases expression | 2 |
| Endosulfan | decreases expression, increases expression | 2 |
| aristolochic acid I | decreases expression | 1 |
| FR900359 | increases phosphorylation | 1 |
| triphenyl phosphate | affects expression | 1 |
| bisphenol A | increases expression | 1 |
| arsenite | affects binding, decreases reaction | 1 |
| manganese chloride | decreases expression, increases abundance | 1 |
| potassium chromate(VI) | affects cotreatment, decreases expression | 1 |
| coumarin | decreases phosphorylation | 1 |
| epigallocatechin gallate | affects cotreatment, decreases expression | 1 |
| bicalutamide | increases expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| abrine | decreases expression | 1 |
| Temozolomide | decreases expression | 1 |
| Arsenic Trioxide | increases expression | 1 |
| Acetaminophen | decreases expression | 1 |
| Arsenic | decreases expression, increases abundance | 1 |
| Caffeine | increases phosphorylation | 1 |
| Coal | decreases expression, increases abundance | 1 |
| Doxorubicin | decreases expression | 1 |
| Estradiol | decreases expression | 1 |
| Hydralazine | affects cotreatment, increases expression | 1 |
| Manganese | decreases expression, increases abundance | 1 |
| Phthalic Acids | decreases methylation | 1 |
| Smoke | decreases expression, increases abundance | 1 |
| Tretinoin | increases expression | 1 |
| Valproic Acid | affects cotreatment, increases expression | 1 |
| 7,8-Dihydro-7,8-dihydroxybenzo(a)pyrene 9,10-oxide | decreases expression | 1 |
Clinical trials (associated diseases)
9 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT03589014 | PHASE2 | COMPLETED | Treat_CCM: Propranolol in Familial Cerebral Cavernous Malformation |
| NCT05085561 | PHASE2 | COMPLETED | The Symptomatic Cerebral Cavernous Malformation Trial of REC-994 |
| NCT02603328 | PHASE1/PHASE2 | COMPLETED | Atorvastatin Treatment of Cavernous Angiomas With Symptomatic Hemorrhage Exploratory Proof of Concept (AT CASH EPOC) Trial |
| NCT02946866 | Not specified | UNKNOWN | CoHOrt of Cerebral CavernOus maLformATion: multicEnter Prospective Observational Study |
| NCT03652181 | Not specified | COMPLETED | CASH (Cavernous Angiomas With Symptomatic Hemorrhage) Trial Readiness |
| NCT04467489 | Not specified | ACTIVE_NOT_RECRUITING | Biomarkers of CASH |
| NCT05148663 | Not specified | TERMINATED | CCM Blood Biomarker Validation Study |
| NCT05298709 | Not specified | TERMINATED | Functional Magnetic Resonance Imaging (fMRI) Vascular Reactivity in Cerebral Cavernous Malformations (CCM) |
| NCT06983132 | Not specified | RECRUITING | Natural History of Familial Cerebral Cavernous Malformations: the CCM_Italia Cohort Study |
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): angiokeratoma corporis diffusum with arteriovenous fistulas, cerebral cavernous malformation