ANKRD34A
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Summary
ANKRD34A (ankyrin repeat domain 34A, HGNC:27639) is a protein-coding gene on chromosome 1q21.1, encoding Ankyrin repeat domain-containing protein 34A (Q69YU3).
Predicted to be active in pi-body.
Source: NCBI Gene 284615 — RefSeq curated summary.
At a glance
- Clinical variants (ClinVar): 154 total — 37 pathogenic, 11 likely-pathogenic
- Phenotypes (HPO): 3
- MANE Select transcript:
NM_001039888
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:27639 |
| Approved symbol | ANKRD34A |
| Name | ankyrin repeat domain 34A |
| Location | 1q21.1 |
| Locus type | gene with protein product |
| Status | Approved |
| Ensembl gene | ENSG00000272031 |
| Ensembl biotype | protein_coding |
| Entrez | 284615 |
Gene structure
Transcript identifiers
Ensembl transcripts: 4 — 4 protein_coding
ENST00000606888, ENST00000619519, ENST00000619813, ENST00000855736
RefSeq mRNA: 1 — MANE Select: NM_001039888
NM_001039888
CCDS: CCDS72874
Canonical transcript exons
ENST00000606888 — 4 exons
| Exon | Start | End |
|---|---|---|
| ENSE00003694858 | 145959441 | 145961879 |
| ENSE00003697880 | 145963310 | 145963537 |
| ENSE00003698669 | 145964184 | 145964575 |
| ENSE00003700928 | 145962421 | 145962968 |
Expression profiles
Bgee: expression breadth ubiquitous, 168 present calls, max score 85.58.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 2.9297 / max 63.8719, expressed in 1004 samples.
FANTOM5 promoters (10 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 14174 | 1.5342 | 527 |
| 14178 | 0.5511 | 272 |
| 14177 | 0.3021 | 143 |
| 14168 | 0.2384 | 105 |
| 14173 | 0.1344 | 54 |
| 14166 | 0.0660 | 18 |
| 14167 | 0.0579 | 21 |
| 14172 | 0.0218 | 8 |
| 14175 | 0.0217 | 8 |
| 14176 | 0.0020 | 2 |
Top tissues by expression
249 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| prefrontal cortex | UBERON:0000451 | 85.58 | gold quality |
| right hemisphere of cerebellum | UBERON:0014890 | 85.10 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 84.32 | gold quality |
| cerebellar cortex | UBERON:0002129 | 84.30 | gold quality |
| right frontal lobe | UBERON:0002810 | 84.21 | gold quality |
| dorsolateral prefrontal cortex | UBERON:0009834 | 83.87 | gold quality |
| cerebellum | UBERON:0002037 | 83.76 | gold quality |
| frontal cortex | UBERON:0001870 | 83.62 | gold quality |
| Brodmann (1909) area 9 | UBERON:0013540 | 83.25 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 82.95 | gold quality |
| neocortex | UBERON:0001950 | 82.76 | gold quality |
| Brodmann (1909) area 46 | UBERON:0006483 | 81.85 | gold quality |
| anterior cingulate cortex | UBERON:0009835 | 81.48 | gold quality |
| primary visual cortex | UBERON:0002436 | 81.41 | gold quality |
| cerebral cortex | UBERON:0000956 | 80.99 | gold quality |
| cortical plate | UBERON:0005343 | 79.66 | gold quality |
| superior frontal gyrus | UBERON:0002661 | 79.49 | gold quality |
| entorhinal cortex | UBERON:0002728 | 79.18 | gold quality |
| caudate nucleus | UBERON:0001873 | 78.31 | gold quality |
| middle temporal gyrus | UBERON:0002771 | 77.92 | silver quality |
| brain | UBERON:0000955 | 77.78 | gold quality |
| forebrain | UBERON:0001890 | 77.62 | gold quality |
| occipital lobe | UBERON:0002021 | 77.62 | gold quality |
| nucleus accumbens | UBERON:0001882 | 77.58 | gold quality |
| postcentral gyrus | UBERON:0002581 | 77.47 | gold quality |
| putamen | UBERON:0001874 | 77.26 | gold quality |
| temporal lobe | UBERON:0001871 | 77.08 | gold quality |
| gastrocnemius | UBERON:0001388 | 76.64 | gold quality |
| Brodmann (1909) area 23 | UBERON:0013554 | 76.54 | gold quality |
| cerebellar vermis | UBERON:0004720 | 76.50 | silver quality |
Single-cell (SCXA)
Detected in 2 experiment(s), a significant marker in 0.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-MTAB-7249 | no | 35.11 |
| E-ANND-3 | no | 1.53 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
93 targeting ANKRD34A, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-6867-5P | 100.00 | 82.21 | 3464 |
| HSA-MIR-4455 | 100.00 | 65.48 | 1587 |
| HSA-MIR-10401-5P | 99.99 | 65.79 | 948 |
| HSA-MIR-12136 | 99.98 | 72.81 | 5713 |
| HSA-MIR-1468-3P | 99.96 | 72.74 | 3797 |
| HSA-MIR-218-5P | 99.93 | 72.22 | 2103 |
| HSA-MIR-15A-5P | 99.90 | 72.80 | 2787 |
| HSA-MIR-15B-5P | 99.90 | 72.78 | 2798 |
| HSA-MIR-16-5P | 99.90 | 72.80 | 2780 |
| HSA-MIR-195-5P | 99.90 | 72.81 | 2805 |
| HSA-MIR-548E-5P | 99.89 | 72.73 | 4486 |
| HSA-MIR-6838-5P | 99.89 | 71.94 | 2690 |
| HSA-MIR-4492 | 99.87 | 68.25 | 3611 |
| HSA-MIR-4447 | 99.85 | 67.81 | 2900 |
| HSA-MIR-3663-3P | 99.84 | 70.39 | 798 |
| HSA-MIR-6756-5P | 99.82 | 67.97 | 2466 |
| HSA-MIR-6842-5P | 99.80 | 67.54 | 1587 |
| HSA-MIR-7110-5P | 99.80 | 67.84 | 1712 |
| HSA-MIR-4668-5P | 99.79 | 70.58 | 3782 |
| HSA-MIR-3913-5P | 99.78 | 67.26 | 968 |
| HSA-MIR-4713-5P | 99.78 | 67.80 | 1794 |
| HSA-MIR-4802-3P | 99.72 | 70.13 | 1273 |
| HSA-MIR-4306 | 99.72 | 70.50 | 3630 |
| HSA-MIR-4729 | 99.69 | 72.18 | 4233 |
| HSA-MIR-6766-5P | 99.68 | 67.70 | 2325 |
| HSA-MIR-10394-5P | 99.65 | 66.83 | 1852 |
| HSA-MIR-1205 | 99.65 | 66.76 | 1826 |
| HSA-MIR-6752-5P | 99.59 | 67.32 | 1243 |
| HSA-MIR-762 | 99.58 | 66.61 | 1994 |
| HSA-MIR-4472 | 99.56 | 66.08 | 1478 |
Cross-species orthologs
2 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| mus_musculus | Ankrd34a | ENSMUSG00000049097 |
| rattus_norvegicus | Ankrd34a | ENSRNOG00000033741 |
Paralogs (1): ANKRD34B (ENSG00000189127)
Protein
Protein identifiers
Ankyrin repeat domain-containing protein 34A — Q69YU3 (reviewed: Q69YU3)
All UniProt accessions (3): A0A087WTW1, A0A087X1I1, Q69YU3
UniProt curated annotations — full annotation on UniProt →
Post-translational modifications. Methylated at Gln-15 by N6AMT1.
Similarity. Belongs to the ANKRD34 family.
RefSeq proteins (1): NP_001034977* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR002110 | Ankyrin_rpt | Repeat |
| IPR036770 | Ankyrin_rpt-contain_sf | Homologous_superfamily |
| IPR042637 | AN34A/B/C | Family |
Pfam: PF12796
UniProt features (15 total): compositionally biased region 6, repeat 4, modified residue 2, chain 1, mutagenesis site 1, region of interest 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q69YU3-F1 | 57.86 | 0.19 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (2): 15, 316
Mutagenesis-validated functional residues (1):
| Position | Phenotype |
|---|---|
| 15 | abolishes methylation by n6amt1. |
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 60 (showing top):
chr1q21, GOCC_RIBONUCLEOPROTEIN_GRANULE, GOCC_POLE_PLASM, GOCC_PI_BODY, GOCC_SUPRAMOLECULAR_COMPLEX, GSE14386_UNTREATED_VS_IFNA_TREATED_ACT_PBMC_MS_PATIENT_UP, MEF2D_TARGET_GENES, RYBP_TARGET_GENES, ZNF329_TARGET_GENES, ZNF407_TARGET_GENES, ZNF664_TARGET_GENES, MIR6867_5P, MIR4729, MIR4306, MIR6756_5P
GO Biological Process (0):
GO Molecular Function (1): protein binding (GO:0005515)
GO Cellular Component (1): pi-body (GO:0071546)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| binding | 1 |
| P granule | 1 |
Protein interactions and networks
STRING
1056 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| ANKRD34A | POLR3GL | Q9BT43 | 578 |
| ANKRD34A | NUDT17 | P0C025 | 507 |
| ANKRD34A | LIX1L | Q8IVB5 | 480 |
| ANKRD34A | HS3ST6 | Q96QI5 | 450 |
| ANKRD34A | ADGRB2 | O60241 | 429 |
| ANKRD34A | ACP6 | Q9NPH0 | 427 |
| ANKRD34A | ZNF669 | Q96BR6 | 418 |
| ANKRD34A | POLR3C | Q9BUI4 | 405 |
| ANKRD34A | DBNDD1 | Q9H9R9 | 383 |
| ANKRD34A | MANEAL | Q5VSG8 | 382 |
| ANKRD34A | CHD1L | Q86WJ1 | 373 |
| ANKRD34A | PEX11B | O96011 | 373 |
| ANKRD34A | ZNF404 | Q494X3 | 373 |
| ANKRD34A | FLACC1 | Q96Q35 | 372 |
| ANKRD34A | HJV | Q6ZVN8 | 370 |
| ANKRD34A | PNMA6A | P0CW24 | 370 |
IntAct
53 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| YWHAZ | BLTP3B | psi-mi:“MI:0914”(association) | 0.530 |
| YWHAB | BRAF | psi-mi:“MI:0914”(association) | 0.350 |
| YWHAE | DEPDC5 | psi-mi:“MI:0914”(association) | 0.350 |
| YWHAG | BRAF | psi-mi:“MI:0914”(association) | 0.350 |
| ANKRD34A | DCLK1 | psi-mi:“MI:0915”(physical association) | 0.000 |
| ANKRD34A | SIPA1L1 | psi-mi:“MI:0915”(physical association) | 0.000 |
| ANKRD34A | KIF1C | psi-mi:“MI:0915”(physical association) | 0.000 |
| ANKRD34A | SRGAP2 | psi-mi:“MI:0915”(physical association) | 0.000 |
| ANKRD34A | GIGYF1 | psi-mi:“MI:0915”(physical association) | 0.000 |
| ANKRD34A | NADK | psi-mi:“MI:0915”(physical association) | 0.000 |
| ANKRD34A | NF1 | psi-mi:“MI:0915”(physical association) | 0.000 |
| ANKRD34A | AFDN | psi-mi:“MI:0915”(physical association) | 0.000 |
| ANKRD34A | HDAC4 | psi-mi:“MI:0915”(physical association) | 0.000 |
| ANKRD34A | MELK | psi-mi:“MI:0915”(physical association) | 0.000 |
| ANKRD34A | TBC1D25 | psi-mi:“MI:0915”(physical association) | 0.000 |
| MAST3 | ANKRD34A | psi-mi:“MI:0915”(physical association) | 0.000 |
| EIF4E2 | ANKRD34A | psi-mi:“MI:0915”(physical association) | 0.000 |
| CDC25B | ANKRD34A | psi-mi:“MI:0915”(physical association) | 0.000 |
| CDK16 | ANKRD34A | psi-mi:“MI:0915”(physical association) | 0.000 |
| TIAM1 | ANKRD34A | psi-mi:“MI:0915”(physical association) | 0.000 |
| ZNF638 | ANKRD34A | psi-mi:“MI:0915”(physical association) | 0.000 |
| MAP3K21 | ANKRD34A | psi-mi:“MI:0915”(physical association) | 0.000 |
| SH3PXD2A | ANKRD34A | psi-mi:“MI:0915”(physical association) | 0.000 |
| DENND4C | ANKRD34A | psi-mi:“MI:0915”(physical association) | 0.000 |
| PHLDB2 | ANKRD34A | psi-mi:“MI:0915”(physical association) | 0.000 |
| KSR1 | ANKRD34A | psi-mi:“MI:0915”(physical association) | 0.000 |
| DENND1A | ANKRD34A | psi-mi:“MI:0915”(physical association) | 0.000 |
| RAB3IP | ANKRD34A | psi-mi:“MI:0915”(physical association) | 0.000 |
| MAPKAP1 | ANKRD34A | psi-mi:“MI:0915”(physical association) | 0.000 |
| RTKN | ANKRD34A | psi-mi:“MI:0915”(physical association) | 0.000 |
BioGRID (53): ANKRD34A (Affinity Capture-MS), ANKRD34A (Affinity Capture-MS), ANKRD34A (Affinity Capture-MS), ANKRD34A (Affinity Capture-MS), ANKRD34A (Affinity Capture-MS), ANKRD34A (Affinity Capture-MS), ANKRD34A (Affinity Capture-MS), ANKRD34A (Affinity Capture-MS), ANKRD34A (Affinity Capture-MS), LRFN1 (Affinity Capture-MS), SRSF12 (Affinity Capture-MS), USP21 (Affinity Capture-MS), FAM110A (Affinity Capture-MS), FAM110B (Affinity Capture-MS), MAGI1 (Affinity Capture-MS)
ESM2 similar proteins: A0JNI1, E9Q0S6, O94983, O95402, P80192, Q08AE8, Q1JQA8, Q1LZH7, Q28DG6, Q3B7I8, Q3KPL3, Q3U1V8, Q4VAC9, Q53LP3, Q5BJT1, Q5DU25, Q5HZA4, Q5JU85, Q5M836, Q5PQ30, Q5RBI7, Q5REP3, Q5XG99, Q5ZKK0, Q69YU3, Q6DCC7, Q6DEF4, Q6IPM2, Q6IQA2, Q6P606, Q76G19, Q7TSI1, Q7Z3D4, Q80Y50, Q86UU1, Q8BL43, Q8BY98, Q8C0J6, Q8CC84, Q8IV50
Diamond homologs: A5PLL1, P0C6C1, Q3UUF8, Q5BJT1, Q5PQ89, Q69YU3, Q8BLB8, A2ARS0, C9JTQ0, Q5UPG6
SIGNOR signaling
0 interactions.
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 55 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| MITF-M-regulated melanocyte development | 5 | 15.4× | 2e-04 |
| CDC42 GTPase cycle | 6 | 11.7× | 2e-04 |
| RHO GTPase cycle | 7 | 11.4× | 6e-05 |
| RHO GTPase Effectors | 6 | 11.0× | 2e-04 |
| Signaling by Rho GTPases | 11 | 10.2× | 7e-07 |
| Signaling by Rho GTPases, Miro GTPases and RHOBTB3 | 11 | 10.0× | 7e-07 |
| Transcriptional Regulation by TP53 | 5 | 8.4× | 2e-03 |
| Diseases of signal transduction by growth factor receptors and second messengers | 5 | 7.7× | 2e-03 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| protein targeting | 5 | 34.6× | 1e-04 |
| protein phosphorylation | 7 | 9.0× | 2e-03 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
154 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 37 |
| Likely pathogenic | 11 |
| Uncertain significance | 93 |
| Likely benign | 2 |
| Benign | 3 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1070874 | NC_000001.10:g.(?145414782)(145509211_?)del | Pathogenic |
| 1333003 | GRCh37/hg19 1q21.1(chr1:145038814-145747463) | Pathogenic |
| 146028 | GRCh38/hg38 1q21.1(chr1:145688153-146166380)x3 | Pathogenic |
| 148600 | GRCh38/hg38 1q21.1(chr1:145601946-146019823)x1 | Pathogenic |
| 150730 | GRCh38/hg38 1q21.1(chr1:145601946-146046631)x1 | Pathogenic |
| 151319 | GRCh37/hg19 1q21.1(chr1:144955198-145831720)x1 | Pathogenic |
| 160833 | GRCh38/hg38 1q21.1(chr1:145635445-146009630)x1 | Pathogenic |
| 2445217 | Single allele | Pathogenic |
| 253437 | GRCh37/hg19 1q21.1(chr1:144709677-145735385)x3 | Pathogenic |
| 253564 | GRCh37/hg19 1q21.1(chr1:145387945-145735385)x1 | Pathogenic |
| 2574675 | GRCh37/hg19 1q21.1(chr1:145382123-145792051) | Pathogenic |
| 2579208 | GRCh38/hg38 1q21.1(chr1:145822587-146064587)x1 | Pathogenic |
| 2580306 | GRCh37/hg19 1q21.1(chr1:145365275-145826979)x3 | Pathogenic |
| 3062018 | Single allele | Pathogenic |
| 3242277 | GRCh37/hg19 1q21.1(chr1:145382834-145830864)x1 | Pathogenic |
| 32650 | GRCh38/hg38 1q21.1(chr1:145635445-146009630)x1 | Pathogenic |
| 393816 | GRCh37/hg19 1q21.1(chr1:145224606-145735326)x3 | Pathogenic |
| 393903 | GRCh37/hg19 1q21.1(chr1:145388004-146535353)x1 | Pathogenic |
| 394029 | GRCh37/hg19 1q21.1(chr1:145387945-145735326)x3 | Pathogenic |
| 394030 | GRCh37/hg19 1q21.1(chr1:145387945-145735326)x1 | Pathogenic |
| 394477 | GRCh37/hg19 1q21.1(chr1:145283118-145735326)x3 | Pathogenic |
| 395087 | GRCh37/hg19 1q21.1(chr1:145112506-145735326)x3 | Pathogenic |
| 4075862 | GRCh37/hg19 1q21.1(chr1:145182059-145747910)x1 | Pathogenic |
| 583553 | NC_000001.10:g.(?145414782)(145474819_?)del | Pathogenic |
| 58494 | GRCh38/hg38 1q21.1-21.2(chr1:145601946-146944906)x1 | Pathogenic |
| 59352 | GRCh38/hg38 1q21.1-21.2(chr1:145601946-146944906)x3 | Pathogenic |
| 59353 | GRCh38/hg38 1q21.1-21.2(chr1:145601946-146944906)x3 | Pathogenic |
| 59860 | GRCh38/hg38 1q21.1-21.2(chr1:145335791-146944906)x1 | Pathogenic |
| 59864 | GRCh38/hg38 1q21.1(chr1:145335791-146133507)x1 | Pathogenic |
| 59867 | GRCh38/hg38 1q21.1(chr1:145688094-146046645)x1 | Pathogenic |
SpliceAI
805 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 1:145964407:G:GT | donor_gain | 1.0000 |
| 1:145964375:GGCC:G | donor_gain | 0.9900 |
| 1:145964383:G:GT | donor_gain | 0.9900 |
| 1:145964445:A:T | donor_gain | 0.9900 |
| 1:145964446:G:T | donor_gain | 0.9900 |
| 1:145964334:GGA:G | donor_gain | 0.9800 |
| 1:145964352:G:GG | donor_gain | 0.9800 |
| 1:145964379:A:T | donor_gain | 0.9800 |
| 1:145964419:G:T | donor_gain | 0.9800 |
| 1:145961570:T:TA | donor_gain | 0.9700 |
| 1:145962486:CCGCC:C | donor_gain | 0.9600 |
| 1:145962487:TCCGC:T | donor_gain | 0.9600 |
| 1:145964345:C:G | donor_gain | 0.9600 |
| 1:145964462:C:T | donor_gain | 0.9500 |
| 1:145962483:C:CT | donor_gain | 0.9400 |
| 1:145964446:G:GT | donor_gain | 0.9400 |
| 1:145964333:G:T | donor_gain | 0.9300 |
| 1:145964333:GA:G | donor_gain | 0.9300 |
| 1:145964501:ATTT:A | donor_gain | 0.9300 |
| 1:145964332:A:G | donor_gain | 0.9200 |
| 1:145964513:C:G | donor_gain | 0.9200 |
| 1:145962482:C:CT | donor_gain | 0.9000 |
| 1:145964420:G:GT | donor_gain | 0.9000 |
| 1:145964443:C:G | donor_gain | 0.9000 |
| 1:145964439:A:AG | donor_gain | 0.8900 |
| 1:145964406:G:T | donor_gain | 0.8800 |
| 1:145964544:TCGCA:T | donor_gain | 0.8800 |
| 1:145962417:T:G | donor_loss | 0.8700 |
| 1:145962418:GT:G | donor_loss | 0.8700 |
| 1:145962419:GGT:G | donor_loss | 0.8700 |
AlphaMissense
3119 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 1:145961329:A:T | I144N | 1.000 |
| 1:145961332:A:T | I143N | 1.000 |
| 1:145961329:A:C | I144S | 0.999 |
| 1:145961329:A:G | I144T | 0.999 |
| 1:145961332:A:C | I143S | 0.999 |
| 1:145961332:A:G | I143T | 0.999 |
| 1:145961335:A:C | I142S | 0.999 |
| 1:145961335:A:T | I142N | 0.999 |
| 1:145961371:A:G | L130P | 0.999 |
| 1:145961470:A:T | L97H | 0.999 |
| 1:145961518:A:T | L81H | 0.999 |
| 1:145961539:T:A | D74V | 0.999 |
| 1:145961689:A:G | L24P | 0.999 |
| 1:145961285:A:C | Y159D | 0.998 |
| 1:145961335:A:G | I142T | 0.998 |
| 1:145961371:A:T | L130Q | 0.998 |
| 1:145961407:G:T | A118D | 0.998 |
| 1:145961408:C:G | A118P | 0.998 |
| 1:145961416:A:T | L115H | 0.998 |
| 1:145961419:G:T | A114D | 0.998 |
| 1:145961437:T:A | D108V | 0.998 |
| 1:145961540:C:A | D74Y | 0.998 |
| 1:145961551:G:T | P70H | 0.998 |
| 1:145961569:A:G | L64P | 0.998 |
| 1:145961572:A:G | L63P | 0.998 |
| 1:145961572:A:T | L63H | 0.998 |
| 1:145961626:G:T | A45D | 0.998 |
| 1:145961664:A:C | N32K | 0.998 |
| 1:145961664:A:T | N32K | 0.998 |
| 1:145961665:T:A | N32I | 0.998 |
dbSNP variants (sampled 300 via entrez): RS1000857081 (1:145960130 T>C,G), RS1001289187 (1:145959756 G>A), RS1002308703 (1:145959646 T>C), RS1002339699 (1:145959413 C>T), RS1002522350 (1:145965570 T>G), RS1002963907 (1:145965833 T>C), RS1004576548 (1:145961223 C>A), RS1005515461 (1:145966546 G>A), RS1005849819 (1:145965008 T>C), RS1007072191 (1:145966153 C>A,G), RS1007186809 (1:145966371 G>A), RS1007403502 (1:145964605 G>A), RS1007930257 (1:145964895 C>G), RS1009110103 (1:145963187 T>C), RS1009492035 (1:145962912 T>C)
Disease associations
OMIM: gene `` | disease phenotypes: MIM:274000, MIM:612474, MIM:181500, MIM:602390
GenCC curated gene-disease
Mondo (8): thrombocytopenia-absent radius syndrome (MONDO:0010121), cerebral palsy (MONDO:0006497), microcephaly (MONDO:0001149), breast ductal adenocarcinoma (MONDO:0005590), primary ovarian failure (MONDO:0005387), chromosome 1q21.1 deletion syndrome (MONDO:0012914), schizophrenia (MONDO:0005090), hemochromatosis type 2A (MONDO:0011216)
Orphanet (5): Thrombocytopenia-absent radius syndrome (Orphanet:3320), 1q21.1 microdeletion syndrome (Orphanet:250989), HJV or HAMP-related hemochromatosis (Orphanet:79230), NON RARE IN EUROPE: Primary ovarian failure (Orphanet:619), NON RARE IN EUROPE: Schizophrenia (Orphanet:3140)
HPO phenotypes
3 total (3 of 3 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0100021 | Cerebral palsy |
| HP:0000252 | Microcephaly |
| HP:0100753 | Schizophrenia |
GWAS associations
0 associations (top):
MeSH disease descriptors (6)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D018270 | Carcinoma, Ductal, Breast | C04.557.470.200.025.232.500; C04.557.470.615.132.500; C04.588.180.390; C17.800.090.500.390 |
| D002547 | Cerebral Palsy | C10.228.140.140.254 |
| D008831 | Microcephaly | C05.660.207.620; C10.500.507.400.500; C16.131.621.207.620; C16.131.666.507.400.500 |
| D016649 | Primary Ovarian Insufficiency | C12.050.351.500.056.630.750; C12.100.250.056.630.750; C19.391.630.750 |
| C536940 | Absent radii and thrombocytopenia (supp.) | |
| C567291 | Chromosome 1q21.1 Deletion Syndrome, 1.35-Mb (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
25 total (human), top 25 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| aristolochic acid I | increases expression | 1 |
| FR900359 | decreases phosphorylation | 1 |
| triphenyl phosphate | affects expression | 1 |
| propionaldehyde | increases expression | 1 |
| arsenite | increases methylation | 1 |
| S-(1,2-dichlorovinyl)cysteine | affects response to substance, increases expression | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| glycidamide | decreases expression | 1 |
| perfluorooctane sulfonic acid | decreases expression | 1 |
| CGP 52608 | increases reaction, affects binding | 1 |
| MT19c compound | decreases expression | 1 |
| Temozolomide | decreases expression | 1 |
| Benzo(a)pyrene | decreases methylation, increases methylation | 1 |
| Cisplatin | decreases expression | 1 |
| Lipopolysaccharides | increases expression, affects response to substance | 1 |
| Melphalan | decreases expression | 1 |
| Methotrexate | decreases expression | 1 |
| Niclosamide | increases expression | 1 |
| Silicon Dioxide | decreases expression | 1 |
| Smoke | decreases expression | 1 |
| Triclosan | decreases expression | 1 |
| Urethane | increases expression | 1 |
| Aflatoxin B1 | decreases methylation | 1 |
| Acrylamide | decreases expression | 1 |
| S-Nitrosoglutathione | increases expression | 1 |
Clinical trials (associated diseases)
300 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00154830 | PHASE4 | COMPLETED | Alterations of Functional Activities and Leg Stiffness After Hamstring Lengthening in Cerebral Palsy Children |
| NCT00432055 | PHASE4 | COMPLETED | Effects of Botulinum Toxin Type A in Adults With Cerebral Palsy |
| NCT00549471 | PHASE4 | TERMINATED | Improvement After Botulinum Toxin Injections to the Arms in Children With Cerebral Palsy |
| NCT00752934 | PHASE4 | TERMINATED | Does Oral Baclofen Improve Care and Comfort in Spastic Children in Nursing Homes? |
| NCT00964639 | PHASE4 | COMPLETED | Postoperative Pain in Children With Cerebral Palsy After Pelvic and Femoral Osteotomies |
| NCT01386255 | PHASE4 | WITHDRAWN | Placebo Controlled Study of Baclofen for GERD in Children With Cerebral Palsy |
| NCT02546999 | PHASE4 | COMPLETED | Does Botulinum Toxin A Make Walking Easier in Children With Cerebral Palsy? |
| NCT02633241 | PHASE4 | COMPLETED | A Pilot Study of Dexmedetomidine-Propofol in Children Undergoing Magnetic Resonance Imaging |
| NCT03117322 | PHASE4 | COMPLETED | Synbiotic, Prebiotics and Probiotics in Children With Cerebral Palsy and Constipation |
| NCT03648658 | PHASE4 | UNKNOWN | Paracetamol Study in Patients With Low Muscle Mass |
| NCT04074265 | PHASE4 | COMPLETED | Peri-operative Use of a Pain Injection in Pediatric Patients With Cerebral Palsy |
| NCT04273737 | PHASE4 | TERMINATED | Amantadine in Treating Cognitive & Motor Impairments in Adolescents and Adults With Cerebral Palsy |
| NCT04523935 | PHASE4 | COMPLETED | Excessive Crying in Children With Cerebral Palsy and Communication Deficits |
| NCT05887765 | PHASE4 | COMPLETED | Effect of Systematic Dexamethasone on the Duration of Popliteal Nerve Block for Anesthesia After Pediatric Ankle Surgery |
| NCT06176430 | PHASE4 | UNKNOWN | Comparison of Twice Weekly Versus Daily Iron Therapy in Treating Anemia in Children With Cerebral Palsy |
| NCT06189781 | PHASE4 | RECRUITING | Pain Injection Versus Epidural Anesthesia for Hip Surgery in Pediatric Patients With Cerebral Palsy |
| NCT00014989 | PHASE3 | COMPLETED | Beneficial Effects of Antenatal Magnesium Sulfate (BEAM Trial) |
| NCT00065949 | PHASE3 | UNKNOWN | Magnesium Sulfate to Prevent Brain Injury in Premature Infants |
| NCT00367068 | PHASE3 | COMPLETED | Dutch National ITB Study in Children With Cerebral Palsy |
| NCT00491894 | PHASE3 | COMPLETED | Safety and Efficacy Study of Oral Glycopyrrolate Liquid for the Treatment of Pathologic (Chronic Moderate to Severe) Drooling in Pediatric Patients 3 to 18 Years of Age With Cerebral Palsy or Other Neurologic Conditions |
| NCT00632528 | PHASE3 | COMPLETED | MEOPA to Improve Physical Therapy Results After Multilevel Surgery |
| NCT00822029 | PHASE3 | TERMINATED | Use of Oral Bisphosphonates in the Treatment of Osteoporosis of Non-walking Children With Cerebral Palsy |
| NCT00922077 | PHASE3 | COMPLETED | Individualized Neurodevelopmental Treatment |
| NCT01249417 | PHASE3 | COMPLETED | Dysport® Pediatric Lower Limb Spasticity Study |
| NCT01251380 | PHASE3 | COMPLETED | Dysport® Pediatric Lower Limb Spasticity Follow-on Study |
| NCT01437644 | PHASE3 | COMPLETED | The Post-Operative Pain in Cerebral Palsy (POPPIES) Trial |
| NCT01492608 | PHASE3 | COMPLETED | Magnesium Sulphate for Preterm Birth (MASP Study) |
| NCT01603602 | PHASE3 | COMPLETED | BOTOX® Treatment in Pediatric Upper Limb Spasticity |
| NCT01603615 | PHASE3 | COMPLETED | BOTOX® Open-Label Treatment in Pediatric Upper Limb Spasticity |
| NCT01603628 | PHASE3 | COMPLETED | BOTOX® Treatment in Pediatric Lower Limb Spasticity |
| NCT01603641 | PHASE3 | COMPLETED | BOTOX® Open-Label Treatment in Pediatric Lower Limb Spasticity |
| NCT01633736 | PHASE3 | UNKNOWN | Targeted Hip Strength Training in Children With Cerebral Palsy (CP) |
| NCT01898520 | PHASE3 | COMPLETED | A Safety, Efficacy and Tolerability Study of Sativex for the Treatment of Spasticity in Children Aged 8 to 18 Years |
| NCT01929434 | PHASE3 | COMPLETED | Efficacy of Stem Cell Transplantation Compared to Rehabilitation Treatment of Patients With Cerebral Paralysis |
| NCT02002884 | PHASE3 | COMPLETED | Dose-response Study of Efficacy and Safety of Botulinum Toxin Type A to Treat Spasticity of the Arm(s) or of Arm(s) and Leg(s) in Cerebral Palsy |
| NCT02270736 | PHASE3 | COMPLETED | Clinical Study to Investigate the Efficacy and Safety of NT 201 Compared to Placebo in the Treatment of Chronic Troublesome Drooling Associated With Neurological Disorders and/or Intellectual Disability |
| NCT02839785 | PHASE3 | TERMINATED | Analgesia and Physiotherapy in Children With Cerebral Palsy (ANTALKINECP) |
| NCT03110341 | PHASE3 | UNKNOWN | Effect of Erythropoietin in Premature Infants on White Matter Lesions and Neurodevelopmental Outcome |
| NCT03302871 | PHASE3 | COMPLETED | Integrated Management Enhances Functional Gains in Children With Cerebral Palsy Treated by BoNT-A |
| NCT03306212 | PHASE3 | COMPLETED | Efficacy of Intermittent Serial Casting on Spastic Wrist Flexion Deformity |
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): cerebral palsy, chromosome 1q21.1 deletion syndrome, hemochromatosis type 2A, thrombocytopenia-absent radius syndrome