ANKRD55-AS1

Summary

ANKRD55-AS1 (ANKRD55 antisense RNA 1, HGNC:59048) is a long non-coding RNA gene on chromosome 5q11.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:59048
Approved symbol	ANKRD55-AS1
Name	ANKRD55 antisense RNA 1
Location	5q11.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000249236
Ensembl biotype	lncRNA
Entrez	105378976

Gene structure

Transcript identifiers

Ensembl transcripts: 8 — 8 lncRNA

ENST00000511861, ENST00000644169, ENST00000645512, ENST00000719859, ENST00000792170, ENST00000792171, ENST00000792172, ENST00000792173

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000511861 — 2 exons

Exon	Start	End
ENSE00002020105	56067036	56067372
ENSE00002026098	56059050	56059096

Expression profiles

Bgee: expression breadth ubiquitous, 109 present calls, max score 81.03.

Top tissues by expression

109 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
sural nerve	UBERON:0015488	81.03	gold quality
bone marrow cell	CL:0002092	67.45	silver quality
lymph node	UBERON:0000029	63.93	gold quality
calcaneal tendon	UBERON:0003701	62.90	gold quality
vermiform appendix	UBERON:0001154	62.77	gold quality
tonsil	UBERON:0002372	62.39	gold quality
blood	UBERON:0000178	62.36	gold quality
bone marrow	UBERON:0002371	61.17	gold quality
hindlimb stylopod muscle	UBERON:0004252	61.16	gold quality
monocyte	CL:0000576	60.53	gold quality
gall bladder	UBERON:0002110	58.82	gold quality
liver	UBERON:0002107	58.35	gold quality
placenta	UBERON:0001987	57.24	gold quality
cortex of kidney	UBERON:0001225	57.18	gold quality
metanephros cortex	UBERON:0010533	55.78	gold quality
endometrium	UBERON:0001295	55.44	gold quality
kidney	UBERON:0002113	55.29	gold quality
adrenal tissue	UBERON:0018303	55.16	gold quality
adult mammalian kidney	UBERON:0000082	55.08	gold quality
prefrontal cortex	UBERON:0000451	54.05	gold quality
small intestine	UBERON:0002108	54.04	gold quality
stromal cell of endometrium	CL:0002255	53.65	silver quality
small intestine Peyer’s patch	UBERON:0003454	53.59	gold quality
islet of Langerhans	UBERON:0000006	53.39	gold quality
corpus callosum	UBERON:0002336	52.98	gold quality
granulocyte	CL:0000094	52.82	gold quality
right lobe of liver	UBERON:0001114	51.70	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	51.10	gold quality
primary visual cortex	UBERON:0002436	49.96	gold quality
pancreas	UBERON:0001264	49.62	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	3.16

Regulation

Is transcription factor: no

Literature-anchored findings (GeneRIF, showing 1)

• The relationship between the lncRNA model and prognosis as well as clinical characteristics of patients with HCC was analyzed. Finally, a predictive nomogram in the the cancer genome atlas cohort was established and verified internallyBased on the RNA sequencing survival analysis, a 9- lncRNAs prognosis model, including TMCC1-AS1, AC008892.1, AL031985.3, L34079.2, U95743.1, KDM4A-AS1, SACS-AS1, AC005534.1, LINC01116. (PMID:32481346)

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.