AP5B1
geneOn this page
Also known as PP1030AP-5DKFZp761E198
Summary
AP5B1 (adaptor related protein complex 5 subunit beta 1, HGNC:25104) is a protein-coding gene on chromosome 11q13.1, encoding AP-5 complex subunit beta-1 (Q2VPB7). As part of AP-5, a probable fifth adaptor protein complex it may be involved in endosomal transport.
Involved in endosomal transport. Located in lysosomal membrane. Part of AP-type membrane coat adaptor complex.
Source: NCBI Gene 91056 — RefSeq curated summary.
At a glance
- GWAS associations: 32
- Clinical variants (ClinVar): 163 total — 2 pathogenic, 3 likely-pathogenic
- MANE Select transcript:
NM_138368
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:25104 |
| Approved symbol | AP5B1 |
| Name | adaptor related protein complex 5 subunit beta 1 |
| Location | 11q13.1 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | PP1030, AP-5, DKFZp761E198 |
| Ensembl gene | ENSG00000254470 |
| Ensembl biotype | protein_coding |
| OMIM | 614367 |
| Entrez | 91056 |
Gene structure
Transcript identifiers
Ensembl transcripts: 2 — 2 protein_coding
ENST00000532090, ENST00000893259
RefSeq mRNA: 1 — MANE Select: NM_138368
NM_138368
CCDS: CCDS58146
Canonical transcript exons
ENST00000532090 — 2 exons
| Exon | Start | End |
|---|---|---|
| ENSE00002157106 | 65773898 | 65780342 |
| ENSE00002581202 | 65780442 | 65780976 |
Expression profiles
Bgee: expression breadth ubiquitous, 178 present calls, max score 91.38.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 13.6068 / max 1532.1054, expressed in 1792 samples.
FANTOM5 promoters (3 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 120678 | 12.4267 | 1788 |
| 120677 | 0.8700 | 418 |
| 120676 | 0.3101 | 132 |
Top tissues by expression
241 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| monocyte | CL:0000576 | 91.38 | gold quality |
| leukocyte | CL:0000738 | 91.05 | gold quality |
| bone marrow cell | CL:0002092 | 87.88 | gold quality |
| blood | UBERON:0000178 | 84.77 | gold quality |
| granulocyte | CL:0000094 | 84.75 | gold quality |
| pancreatic ductal cell | CL:0002079 | 83.79 | silver quality |
| gastrocnemius | UBERON:0001388 | 79.22 | gold quality |
| lower esophagus mucosa | UBERON:0035834 | 79.11 | gold quality |
| right lung | UBERON:0002167 | 78.70 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 78.49 | gold quality |
| esophagus mucosa | UBERON:0002469 | 78.18 | gold quality |
| upper lobe of left lung | UBERON:0008952 | 77.85 | gold quality |
| buccal mucosa cell | CL:0002336 | 77.71 | gold quality |
| popliteal artery | UBERON:0002250 | 77.68 | gold quality |
| tibial artery | UBERON:0007610 | 77.67 | gold quality |
| muscle of leg | UBERON:0001383 | 77.65 | gold quality |
| left coronary artery | UBERON:0001626 | 77.62 | gold quality |
| spleen | UBERON:0002106 | 77.46 | gold quality |
| aorta | UBERON:0000947 | 77.42 | gold quality |
| descending thoracic aorta | UBERON:0002345 | 77.40 | gold quality |
| thoracic aorta | UBERON:0001515 | 77.38 | gold quality |
| mucosa of stomach | UBERON:0001199 | 77.36 | gold quality |
| esophagus | UBERON:0001043 | 77.35 | gold quality |
| ascending aorta | UBERON:0001496 | 77.28 | gold quality |
| upper lobe of lung | UBERON:0008948 | 77.26 | gold quality |
| stromal cell of endometrium | CL:0002255 | 77.22 | gold quality |
| cerebellar vermis | UBERON:0004720 | 77.19 | gold quality |
| body of pancreas | UBERON:0001150 | 76.97 | gold quality |
| skin of leg | UBERON:0001511 | 76.92 | gold quality |
| lower esophagus | UBERON:0013473 | 76.84 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 0.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | no | 3.02 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
100 targeting AP5B1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4673 | 100.00 | 66.64 | 1490 |
| HSA-MIR-6740-5P | 100.00 | 65.64 | 932 |
| HSA-MIR-450A-1-3P | 100.00 | 69.33 | 1837 |
| HSA-MIR-3064-3P | 100.00 | 70.09 | 1254 |
| HSA-MIR-432-3P | 100.00 | 67.86 | 705 |
| HSA-MIR-6077 | 99.99 | 68.04 | 2299 |
| HSA-MIR-150-5P | 99.99 | 66.69 | 1976 |
| HSA-MIR-12121 | 99.99 | 66.64 | 255 |
| HSA-MIR-4645-5P | 99.98 | 65.81 | 1284 |
| HSA-MIR-4715-3P | 99.98 | 66.03 | 670 |
| HSA-MIR-6778-3P | 99.96 | 67.29 | 2693 |
| HSA-MIR-144-3P | 99.94 | 73.98 | 2698 |
| HSA-MIR-497-5P | 99.92 | 71.83 | 2674 |
| HSA-MIR-15A-5P | 99.90 | 72.80 | 2787 |
| HSA-MIR-15B-5P | 99.90 | 72.78 | 2798 |
| HSA-MIR-16-5P | 99.90 | 72.80 | 2780 |
| HSA-MIR-195-5P | 99.90 | 72.81 | 2805 |
| HSA-MIR-424-5P | 99.89 | 71.90 | 2641 |
| HSA-MIR-6838-5P | 99.89 | 71.94 | 2690 |
| HSA-MIR-4492 | 99.87 | 68.25 | 3611 |
| HSA-MIR-4668-5P | 99.79 | 70.58 | 3782 |
| HSA-MIR-6892-3P | 99.68 | 66.40 | 1178 |
| HSA-MIR-6887-3P | 99.66 | 67.83 | 1778 |
| HSA-MIR-651-5P | 99.64 | 68.49 | 1104 |
| HSA-MIR-4666B | 99.64 | 68.69 | 1282 |
| HSA-MIR-1827 | 99.63 | 68.57 | 3265 |
| HSA-MIR-1290 | 99.59 | 69.90 | 2079 |
| HSA-MIR-762 | 99.58 | 66.61 | 1994 |
| HSA-MIR-3136-3P | 99.57 | 66.59 | 781 |
| HSA-MIR-7155-3P | 99.57 | 66.48 | 794 |
Literature-anchored findings (GeneRIF, showing 3)
- AP-5 is an evolutionarily ancient complex, which is involved in endosomal sorting, and which has links with hereditary spastic paraplegia. (PMID:22022230)
- We propose AP-5, SPG15, SPG11 form a coat-like complex, with AP-5 involved in protein sorting, SPG15 facilitating docking of the coat onto membranes by interacting with PI3P via its FYVE domain, and SPG11 (possibly together with SPG15) forming a scaffold. (PMID:23825025)
- HIV-2 particle release was dependent on the adaptor protein complex AP-3 and the newly identified AP-5 complex, but much less so on AP-1. (PMID:27392064)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | ap5b1 | ENSDARG00000078805 |
| mus_musculus | Ap5b1 | ENSMUSG00000049562 |
| rattus_norvegicus | Ap5b1 | ENSRNOG00000026114 |
Protein
Protein identifiers
AP-5 complex subunit beta-1 — Q2VPB7 (reviewed: Q2VPB7)
Alternative names: Adaptor-related protein complex 5 beta subunit
All UniProt accessions (1): Q2VPB7
UniProt curated annotations — full annotation on UniProt →
Function. As part of AP-5, a probable fifth adaptor protein complex it may be involved in endosomal transport.
Subunit / interactions. Probably part of the adaptor protein complex 5 (AP-5), a tetramer composed of AP5B1, AP5M1, AP5S1 and AP5Z1. Interacts with ZFYVE26 and SPG11.
RefSeq proteins (1): NP_612377* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR038741 | AP5B1 | Family |
| IPR048978 | AP5B1_N | Domain |
| IPR048979 | AP5B1_middle | Domain |
| IPR048980 | AP5B1_barrel | Domain |
| IPR048981 | AP5B1_C | Domain |
Pfam: PF21587, PF21588, PF21589, PF21590
UniProt features (4 total): chain 1, region of interest 1, compositionally biased region 1, sequence conflict 1
Structure
Experimental structures (PDB)
2 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 8YAB | ELECTRON MICROSCOPY | 3.26 |
| 8YAH | ELECTRON MICROSCOPY | 3.3 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q2VPB7-F1 | 80.29 | 0.16 |
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 98 (showing top):
GOBP_VACUOLE_ORGANIZATION, GOCC_VACUOLAR_MEMBRANE, RACCACAR_AML_Q6, TGACCTY_ERR1_Q2, GOBP_VESICLE_MEDIATED_TRANSPORT, chr11q13, MYOD_01, AML_Q6, GGARNTKYCCA_UNKNOWN, MARTIN_VIRAL_GPCR_SIGNALING_UP, TGANTCA_AP1_C, MYB_Q3, GOBP_LYTIC_VACUOLE_ORGANIZATION, E12_Q6, AML1_01
GO Biological Process (3): protein transport (GO:0015031), vesicle-mediated transport (GO:0016192), endosomal transport (GO:0016197)
GO Molecular Function (1): protein binding (GO:0005515)
GO Cellular Component (4): lysosomal membrane (GO:0005765), late endosome (GO:0005770), AP-type membrane coat adaptor complex (GO:0030119), AP-5 adaptor complex (GO:0044599)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| transport | 2 |
| intracellular protein localization | 1 |
| establishment of protein localization | 1 |
| cellular process | 1 |
| vesicle-mediated transport | 1 |
| intracellular transport | 1 |
| binding | 1 |
| lysosome | 1 |
| lytic vacuole membrane | 1 |
| endosome | 1 |
| membrane coat | 1 |
| membrane protein complex | 1 |
| AP-type membrane coat adaptor complex | 1 |
Protein interactions and networks
STRING
1066 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| AP5B1 | AP5S1 | Q9NUS5 | 992 |
| AP5B1 | AP5Z1 | O43299 | 980 |
| AP5B1 | SPG11 | Q96JI7 | 966 |
| AP5B1 | ZFYVE26 | Q68DK2 | 905 |
| AP5B1 | AP5M1 | Q9H0R1 | 850 |
| AP5B1 | LRRC28 | Q86X40 | 483 |
| AP5B1 | OVOL1 | O14753 | 467 |
| AP5B1 | ABI3BP | Q7Z7G0 | 451 |
| AP5B1 | KBTBD2 | Q8IY47 | 435 |
| AP5B1 | NYX | Q9GZU5 | 434 |
| AP5B1 | EXOSC9 | Q06265 | 433 |
| AP5B1 | HGS | O14964 | 423 |
| AP5B1 | PRSS48 | Q7RTY5 | 402 |
| AP5B1 | PKHD1 | P08F94 | 394 |
| AP5B1 | CLN3 | Q13286 | 388 |
IntAct
54 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| AP5S1 | AP5B1 | psi-mi:“MI:0914”(association) | 0.800 |
| SPG11 | AP5B1 | psi-mi:“MI:0915”(physical association) | 0.750 |
| AP5B1 | CAMK2B | psi-mi:“MI:0915”(physical association) | 0.670 |
| CAMK2B | AP5B1 | psi-mi:“MI:0915”(physical association) | 0.670 |
| SPG11 | AP5Z1 | psi-mi:“MI:0914”(association) | 0.620 |
| AP5B1 | Ap5z1 | psi-mi:“MI:0915”(physical association) | 0.570 |
| AP5B1 | Ap5m1 | psi-mi:“MI:0915”(physical association) | 0.570 |
| AP5B1 | NIF3L1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| NIF3L1 | AP5B1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| ZFYVE26 | AP5Z1 | psi-mi:“MI:0914”(association) | 0.540 |
| ZFYVE26 | AP5Z1 | psi-mi:“MI:0915”(physical association) | 0.540 |
| CCNJL | PIK3C2A | psi-mi:“MI:0914”(association) | 0.530 |
| SKP2 | DPYSL4 | psi-mi:“MI:0914”(association) | 0.530 |
| GDF9 | MYH11 | psi-mi:“MI:0914”(association) | 0.530 |
| AP5S1 | AP5Z1 | psi-mi:“MI:0914”(association) | 0.530 |
| MAP1LC3A | AP5B1 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| AP5M1 | AP5B1 | psi-mi:“MI:0407”(direct interaction) | 0.410 |
BioGRID (50): AP5B1 (Two-hybrid), AP5B1 (Two-hybrid), AP5B1 (Affinity Capture-MS), AP5B1 (Affinity Capture-MS), AP5B1 (Affinity Capture-MS), AP5B1 (Two-hybrid), AP5B1 (Two-hybrid), KCNRG (Two-hybrid), AP5B1 (Affinity Capture-MS), AP5B1 (Affinity Capture-MS), AP5B1 (Affinity Capture-MS), AP5B1 (Affinity Capture-MS), AP5B1 (Affinity Capture-MS), AP5B1 (Affinity Capture-MS), AP5B1 (Affinity Capture-MS)
ESM2 similar proteins: A0A061IR73, A0A1B0GUU1, A6H687, A8MYJ7, B1WC39, D3ZVB0, E1BD59, G3MY25, G3MZC5, O75064, P07199, P27790, P29597, P48988, P52333, P52824, Q08DF2, Q0VCE3, Q13608, Q1JPD6, Q2VPB7, Q3TAP4, Q3U1Y4, Q3ZBE0, Q499M4, Q53EQ6, Q5JZY3, Q62137, Q63272, Q6B0B8, Q6DI92, Q6ZPS2, Q6ZS72, Q7TM95, Q80VI1, Q86UT6, Q8BYG9, Q8N9M5, Q8R5G7, Q8TE96
Diamond homologs: D3ZVB0, F6S215, G3MZC5, Q2VPB7, Q3TAP4
SIGNOR signaling
1 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| AP5B1 | “form complex” | “AP-5 Adaptor complex” | binding |
Disease & clinical
Clinical variants and AI predictions
ClinVar
163 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 2 |
| Likely pathogenic | 3 |
| Uncertain significance | 142 |
| Likely benign | 13 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (5)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1449359 | NC_000011.9:g.(?64522783)(66283694_?)del | Pathogenic |
| 4291112 | NM_138368.5(AP5B1):c.2191C>T (p.Arg731Ter) | Pathogenic |
| 3777718 | NM_138368.5(AP5B1):c.310del (p.Leu104fs) | Likely pathogenic |
| 3777719 | NM_138368.5(AP5B1):c.463C>T (p.Arg155Ter) | Likely pathogenic |
| 3777720 | NM_138368.5(AP5B1):c.862del (p.Gln288fs) | Likely pathogenic |
SpliceAI
87 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 11:65780436:GCCTA:G | donor_loss | 1.0000 |
| 11:65780437:CCTA:C | donor_loss | 1.0000 |
| 11:65780439:TACC:T | donor_loss | 1.0000 |
| 11:65780459:G:C | donor_gain | 0.9900 |
| 11:65780440:A:AC | donor_gain | 0.9700 |
| 11:65780441:C:CC | donor_gain | 0.9700 |
| 11:65780466:A:AC | donor_gain | 0.9200 |
| 11:65780467:C:CC | donor_gain | 0.9200 |
| 11:65780340:AACCT:A | acceptor_loss | 0.8800 |
| 11:65780341:ACCTG:A | acceptor_loss | 0.8800 |
| 11:65780342:CCTG:C | acceptor_loss | 0.8800 |
| 11:65780343:C:CG | acceptor_loss | 0.8800 |
| 11:65780344:T:C | acceptor_loss | 0.8800 |
| 11:65780355:T:TC | acceptor_gain | 0.8700 |
| 11:65780462:T:TA | donor_gain | 0.8600 |
| 11:65780467:CTT:C | donor_gain | 0.8200 |
| 11:65780469:T:TA | donor_gain | 0.8000 |
| 11:65780458:AGCTT:A | donor_gain | 0.7500 |
| 11:65780345:G:C | acceptor_loss | 0.7300 |
| 11:65780355:T:C | acceptor_gain | 0.7100 |
| 11:65780468:T:C | donor_gain | 0.7100 |
| 11:65780683:CGG:C | donor_gain | 0.7100 |
| 11:65780435:GGCCT:G | donor_loss | 0.6800 |
| 11:65778384:CAG:C | donor_gain | 0.6700 |
| 11:65780442:C:G | donor_loss | 0.6700 |
| 11:65780347:A:AC | acceptor_gain | 0.6500 |
| 11:65778394:T:TA | donor_gain | 0.6400 |
| 11:65780440:AC:A | donor_gain | 0.6400 |
| 11:65780441:CC:C | donor_gain | 0.6400 |
| 11:65780343:C:CC | acceptor_gain | 0.6300 |
AlphaMissense
5461 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 11:65779500:C:A | K331N | 0.989 |
| 11:65779500:C:G | K331N | 0.989 |
| 11:65779566:C:A | K309N | 0.987 |
| 11:65779566:C:G | K309N | 0.987 |
| 11:65779477:A:G | F339S | 0.986 |
| 11:65780442:C:A | K50N | 0.985 |
| 11:65780442:C:G | K50N | 0.985 |
| 11:65779491:A:C | F334L | 0.982 |
| 11:65779491:A:T | F334L | 0.982 |
| 11:65779493:A:G | F334L | 0.982 |
| 11:65780322:G:C | S57R | 0.981 |
| 11:65780322:G:T | S57R | 0.981 |
| 11:65780324:T:G | S57R | 0.981 |
| 11:65778403:A:G | F697S | 0.976 |
| 11:65779476:G:C | F339L | 0.976 |
| 11:65779476:G:T | F339L | 0.976 |
| 11:65779478:A:G | F339L | 0.976 |
| 11:65779368:G:C | F375L | 0.974 |
| 11:65779368:G:T | F375L | 0.974 |
| 11:65779370:A:G | F375L | 0.974 |
| 11:65780036:A:G | C153R | 0.974 |
| 11:65778105:A:C | S796R | 0.972 |
| 11:65778105:A:T | S796R | 0.972 |
| 11:65778107:T:G | S796R | 0.972 |
| 11:65780044:G:T | A150D | 0.968 |
| 11:65778402:G:C | F697L | 0.967 |
| 11:65778402:G:T | F697L | 0.967 |
| 11:65778404:A:G | F697L | 0.967 |
| 11:65779369:A:G | F375S | 0.967 |
| 11:65779570:A:G | F308S | 0.965 |
dbSNP variants (sampled 300 via entrez): RS1000029989 (11:65775772 G>A), RS1000945797 (11:65780926 C>A,G,T), RS1001685979 (11:65781628 G>A,C), RS1002566490 (11:65778105 A>G), RS1002639466 (11:65777012 G>A), RS1002692203 (11:65782966 A>T), RS1003595022 (11:65777266 A>G), RS1003971801 (11:65777457 G>A), RS1004067823 (11:65780189 T>C), RS1005912068 (11:65775892 CTTTTT>C,CT,CTT,CTTTT,CTTTTTT), RS1005934272 (11:65776548 G>A), RS1006008324 (11:65776315 T>C), RS1006038868 (11:65780334 C>A,T), RS1006091398 (11:65780110 G>A,T), RS1006441996 (11:65781937 C>G,T)
Disease associations
OMIM: gene MIM:614367 | disease phenotypes: MIM:232600, MIM:209900, MIM:610329, MIM:303350
GenCC curated gene-disease
Mondo (4): glycogen storage disease V (MONDO:0009293), Bardet-Biedl syndrome (MONDO:0015229), Aicardi-Goutieres syndrome 3 (MONDO:0012471), hereditary spastic paraplegia (MONDO:0019064)
Orphanet (4): Bardet-Biedl syndrome (Orphanet:110), Glycogen storage disease due to muscle glycogen phosphorylase deficiency (Orphanet:368), Aicardi-Goutières syndrome (Orphanet:51), Hereditary spastic paraplegia (Orphanet:685)
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
32 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST001937_15 | Breast cancer | 9.000000e-12 |
| GCST002481_8 | Acne (severe) | 3.000000e-11 |
| GCST003180_5 | Atopic march | 4.000000e-10 |
| GCST003372_35 | Glomerular filtration rate (creatinine) | 1.000000e-11 |
| GCST003372_63 | Glomerular filtration rate (creatinine) | 3.000000e-12 |
| GCST005038_72 | Allergic disease (asthma, hay fever or eczema) | 2.000000e-13 |
| GCST005752_164 | Systemic lupus erythematosus | 7.000000e-06 |
| GCST005985_53 | Creatinine levels | 2.000000e-09 |
| GCST005987_47 | Albumin-globulin ratio | 1.000000e-08 |
| GCST006192_34 | Systolic blood pressure x smoking status (ever vs never) interaction (2df test) | 3.000000e-08 |
| GCST006192_68 | Systolic blood pressure x smoking status (ever vs never) interaction (2df test) | 3.000000e-09 |
| GCST006195_31 | Systolic blood pressure x smoking status (current vs non-current) interaction (2df test) | 6.000000e-09 |
| GCST006195_61 | Systolic blood pressure x smoking status (current vs non-current) interaction (2df test) | 2.000000e-09 |
| GCST006291_81 | Spherical equivalent or myopia (age of diagnosis) | 1.000000e-09 |
| GCST006697_6 | Parental longevity (combined parental attained age, Martingale residuals) | 4.000000e-06 |
| GCST007400_57 | Systemic lupus erythematosus | 3.000000e-06 |
| GCST007797_55 | Asthma onset (childhood vs adult) | 5.000000e-08 |
| GCST007798_130 | Asthma | 3.000000e-14 |
| GCST007800_77 | Asthma (childhood onset) | 3.000000e-23 |
| GCST007994_17 | Asthma (age of onset) | 1.000000e-06 |
| GCST007995_33 | Asthma (childhood onset) | 1.000000e-11 |
| GCST008062_86 | Blood urea nitrogen levels | 2.000000e-11 |
| GCST008064_36 | Chronic kidney disease | 2.000000e-11 |
| GCST008479_11 | Psoriasis | 4.000000e-11 |
| GCST008746_25 | Estimated glomerular filtration rate in diabetes | 2.000000e-08 |
| GCST008916_61 | Asthma | 4.000000e-11 |
| GCST009718_6 | Eczema | 9.000000e-10 |
| GCST009720_52 | Asthma | 4.000000e-11 |
| GCST010002_240 | Refractive error | 3.000000e-11 |
| GCST011947_29 | White matter hyperintensity volume | 3.000000e-06 |
EFO canonical traits (7, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0007755 | atopic march |
| EFO:0005128 | albumin:globulin ratio measurement |
| EFO:0006335 | systolic blood pressure |
| EFO:0006527 | smoking status measurement |
| EFO:0004847 | age at onset |
| EFO:0007796 | parental longevity |
| EFO:0005665 | white matter hyperintensity measurement |
MeSH disease descriptors (4)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D020788 | Bardet-Biedl Syndrome | C10.228.140.617.200; C11.270.684.624; C16.131.077.245.125; C16.320.184.125 |
| D006012 | Glycogen Storage Disease Type V | C16.320.565.202.449.560; C18.452.648.202.449.560 |
| D015419 | Spastic Paraplegia, Hereditary | C10.500.300.820; C10.574.500.495.820; C10.668.829.800.300.820; C16.131.666.300.820; C16.320.400.375.820 |
| C563683 | Aicardi-Goutieres Syndrome 3 (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
21 total (human), top 21 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Cadmium Chloride | decreases expression, increases expression | 2 |
| bisphenol F | affects cotreatment, decreases expression | 1 |
| urushiol | decreases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| methylparaben | increases expression | 1 |
| butyraldehyde | decreases expression | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| bisphenol S | affects cotreatment, decreases expression | 1 |
| Air Pollutants | affects expression, increases abundance | 1 |
| Benzo(a)pyrene | decreases methylation | 1 |
| Dichlorodiphenyl Dichloroethylene | decreases expression | 1 |
| Dexamethasone | affects cotreatment, decreases expression | 1 |
| Indomethacin | affects cotreatment, decreases expression | 1 |
| Ozone | affects expression, increases abundance | 1 |
| Smoke | decreases expression | 1 |
| Tobacco Smoke Pollution | increases expression | 1 |
| Tretinoin | increases expression | 1 |
| Urethane | decreases expression | 1 |
| Valproic Acid | increases methylation | 1 |
| 1-Methyl-3-isobutylxanthine | decreases expression, affects cotreatment | 1 |
| Acrylamide | decreases expression | 1 |
Clinical trials (associated diseases)
83 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT07542548 | PHASE4 | COMPLETED | D-Cycloserine for Serine Palmitoyltransferase Inhibition |
| NCT03746522 | PHASE3 | COMPLETED | Setmelanotide (RM-493), Melanocortin-4 Receptor (MC4R) Agonist, in Bardet-Biedl Syndrome (BBS) and Alström Syndrome (AS) Participants With Moderate to Severe Obesity |
| NCT04966741 | PHASE3 | COMPLETED | Setmelanotide in Pediatric Participants With Rare Genetic Diseases of Obesity |
| NCT05194124 | PHASE3 | COMPLETED | Phase 3 Crossover Trial of Two Formulations of Setmelanotide in Participants With Specific Gene Defects in the MC4R Pathway |
| NCT02432768 | PHASE2 | COMPLETED | The Effect of Triheptanoin in Adults With McArdle Disease (Glycogen Storage Disease Type V) |
| NCT02919631 | PHASE2 | COMPLETED | Triheptanoin in Mc Ardle |
| NCT03112889 | PHASE2 | COMPLETED | Sodium Valproate for GSDV |
| NCT03490019 | PHASE2 | WITHDRAWN | Treatment of Bardet-Biedl-Syndrome With Metformin for Evaluation of a Possible Visual Improvement |
| NCT03961906 | PHASE2 | COMPLETED | Physiotherapy in Hereditary Spastic Paraplegia |
| NCT04768166 | PHASE2 | COMPLETED | Testing Miglustat Administration in Subjects With Spastic Paraplegia 11 |
| NCT04226274 | PHASE1 | COMPLETED | A Study of the Safety of REN001 in Patients With McArdle Disease |
| NCT06117020 | PHASE1 | COMPLETED | Single and Multiple Ascending Dose Study of MTR-601 in Healthy Individuals |
| NCT02385162 | Not specified | WITHDRAWN | Biomarker for Glycogen Storage Diseases (BioGlycogen) |
| NCT02635269 | Not specified | UNKNOWN | Fat and Sugar Metabolism During Exercise in Patients With Metabolic Myopathy |
| NCT03211923 | Not specified | UNKNOWN | Muscle Relaxation in Myopathies With Positive Muscle Phenomena |
| NCT03843606 | Not specified | COMPLETED | Modified Ketogenic Diet in Patients With McArdle Disease Part A |
| NCT03844022 | Not specified | COMPLETED | MRI in McArdle Disease (GSDV) |
| NCT03945370 | Not specified | COMPLETED | Oral Ketone Body Supplementation in Patients With McArdle Disease |
| NCT04044508 | Not specified | COMPLETED | Modified Ketogenic Diet in Patients With McArdle Disease Part B |
| NCT04349566 | Not specified | COMPLETED | Fast Troponin as a Biomarker to Assess Exercise-induced Muscle Damage in Muscle Diseases |
| NCT04694547 | Not specified | COMPLETED | Ketogenic Diet Survey in Patients With McArdle Disease (GSDV) |
| NCT04929002 | Not specified | ACTIVE_NOT_RECRUITING | Carbon-13 Magnetic Resonance Spectroscopy in Glycogen Storage Diseases |
| NCT05943678 | Not specified | ACTIVE_NOT_RECRUITING | Novel Metabolic Muscular Biomarkers in Pompe Disease - a Non-invasive Magnetic Resonance Exploratory Pilot Study. |
| NCT00078091 | Not specified | TERMINATED | Genetics and Clinical Characteristics of Bardet-Biedl Syndrome |
| NCT00213811 | Not specified | COMPLETED | Bardet-Biedl Syndrome Study: Clinical and Genetic Epidemiology Study in Adults |
| NCT01401998 | Not specified | RECRUITING | ARPKD Database Study |
| NCT02329210 | Not specified | RECRUITING | Clinical Registry Investigating Bardet-Biedl Syndrome |
| NCT02435940 | Not specified | RECRUITING | Inherited Retinal Degenerative Disease Registry |
| NCT04461444 | Not specified | RECRUITING | COhort for Bardet-Bield Syndrome and Alström Syndrome for Translational Research Monocentric Interventional Study |
| NCT04463316 | Not specified | RECRUITING | GROWing Up With Rare GENEtic Syndromes |
| NCT04874909 | Not specified | COMPLETED | Classification, Functional Stratification and Biomarkers in Ciliopathy (CILLICORIRCM) |
| NCT05183802 | Not specified | APPROVED_FOR_MARKETING | An Expanded Access Protocol for Setmelanotide for Treatment of Bardet-Biedl Syndrome (BBS) |
| NCT05400278 | Not specified | COMPLETED | Characterizing the Genotype and Phenotype in Adults With Bardet-Biedl Syndrome |
| NCT06239064 | Not specified | ACTIVE_NOT_RECRUITING | Early Genetic Identification of Obesity |
| NCT06615011 | Not specified | NOT_YET_RECRUITING | Bardet Beidle Syndrome in a Syrian Adolescent : a Rare Case Report |
| NCT07602803 | Not specified | COMPLETED | The Effect of GLP1 Agonists on Weight Loss in BBS Cohort in the UK |
| NCT02604186 | PHASE2/PHASE3 | COMPLETED | Effects of Botulinum Toxin Injections in Patients With Hereditary Spastic Paraplegia |
| NCT05518188 | PHASE1/PHASE2 | RECRUITING | Melpida: Recombinant Adeno-associated Virus (serotype 9) Encoding a Codon Optimized Human AP4M1 Transgene (hAP4M1opt) |
| NCT06948019 | PHASE1/PHASE2 | NOT_YET_RECRUITING | Safety and Efficacy of AAV9/AP4B1 (BFB-101) For Patients With AP4B1-related Hereditary Spastic Paraplegia Type 47 (SPG47) |
| NCT06478238 | EARLY_PHASE1 | RECRUITING | Calcium Folinate Treatment of Spastic Paraplegia 56 |
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): Aicardi-Goutieres syndrome 3, atopic eczema, Bardet-Biedl syndrome, glycogen storage disease V, gout, hereditary spastic paraplegia