APOL2
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Also known as APOL-II
Summary
APOL2 (apolipoprotein L2, HGNC:619) is a protein-coding gene on chromosome 22q12.3, encoding Apolipoprotein L2 (Q9BQE5). May affect the movement of lipids in the cytoplasm or allow the binding of lipids to organelles.
This gene is a member of the apolipoprotein L gene family. The encoded protein is found in the cytoplasm, where it may affect the movement of lipids or allow the binding of lipids to organelles. Two transcript variants encoding the same protein have been found for this gene.
Source: NCBI Gene 23780 — RefSeq curated summary.
At a glance
- Gene–disease (curated): schizophrenia (No Known Disease Relationship, GenCC)
- GWAS associations: 2
- Clinical variants (ClinVar): 97 total
- Phenotypes (HPO): 7
- MANE Select transcript:
NM_030882
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:619 |
| Approved symbol | APOL2 |
| Name | apolipoprotein L2 |
| Location | 22q12.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | APOL-II |
| Ensembl gene | ENSG00000128335 |
| Ensembl biotype | protein_coding |
| OMIM | 607252 |
| Entrez | 23780 |
Gene structure
Transcript identifiers
Ensembl transcripts: 16 — 12 protein_coding, 4 protein_coding_CDS_not_defined
ENST00000249066, ENST00000358502, ENST00000451256, ENST00000454728, ENST00000473549, ENST00000476579, ENST00000484830, ENST00000489186, ENST00000529194, ENST00000866480, ENST00000866481, ENST00000866482, ENST00000866483, ENST00000946286, ENST00000946287, ENST00000946288
RefSeq mRNA: 2 — MANE Select: NM_030882
NM_030882, NM_145637
CCDS: CCDS43014
Canonical transcript exons
ENST00000358502 — 5 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001773877 | 36231340 | 36231466 |
| ENSE00002189250 | 36239441 | 36239527 |
| ENSE00003524504 | 36233153 | 36233241 |
| ENSE00003524514 | 36233402 | 36233455 |
| ENSE00003712559 | 36226209 | 36228280 |
Expression profiles
Bgee: expression breadth ubiquitous, 282 present calls, max score 99.57.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 23.6669 / max 685.6169, expressed in 1788 samples.
FANTOM5 promoters (3 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 193875 | 18.1791 | 1683 |
| 193876 | 5.1568 | 1616 |
| 193877 | 0.3310 | 128 |
Top tissues by expression
290 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| tendon of biceps brachii | UBERON:0008188 | 99.57 | gold quality |
| granulocyte | CL:0000094 | 96.69 | gold quality |
| apex of heart | UBERON:0002098 | 95.67 | gold quality |
| gall bladder | UBERON:0002110 | 95.50 | gold quality |
| adenohypophysis | UBERON:0002196 | 94.72 | gold quality |
| medial globus pallidus | UBERON:0002477 | 94.70 | gold quality |
| blood | UBERON:0000178 | 94.34 | gold quality |
| cerebellar cortex | UBERON:0002129 | 94.32 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 94.32 | gold quality |
| monocyte | CL:0000576 | 94.22 | gold quality |
| right frontal lobe | UBERON:0002810 | 94.14 | gold quality |
| right hemisphere of cerebellum | UBERON:0014890 | 94.07 | gold quality |
| tibial nerve | UBERON:0001323 | 93.82 | gold quality |
| pituitary gland | UBERON:0000007 | 93.76 | gold quality |
| body of uterus | UBERON:0009853 | 93.74 | gold quality |
| leukocyte | CL:0000738 | 93.58 | gold quality |
| cerebellum | UBERON:0002037 | 93.58 | gold quality |
| smooth muscle tissue | UBERON:0001135 | 93.57 | gold quality |
| upper lobe of left lung | UBERON:0008952 | 93.54 | gold quality |
| lymph node | UBERON:0000029 | 93.52 | gold quality |
| right lobe of liver | UBERON:0001114 | 93.51 | gold quality |
| mononuclear cell | CL:0000842 | 93.45 | gold quality |
| spleen | UBERON:0002106 | 93.34 | gold quality |
| omental fat pad | UBERON:0010414 | 93.33 | gold quality |
| peritoneum | UBERON:0002358 | 93.32 | gold quality |
| vena cava | UBERON:0004087 | 93.19 | gold quality |
| globus pallidus | UBERON:0001875 | 93.04 | gold quality |
| pericardium | UBERON:0002407 | 93.00 | gold quality |
| left uterine tube | UBERON:0001303 | 92.91 | gold quality |
| cingulate cortex | UBERON:0003027 | 92.85 | gold quality |
Single-cell (SCXA)
Detected in 6 experiment(s), a significant marker in 4.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-MTAB-7052 | yes | 815.28 |
| E-GEOD-81608 | yes | 16.61 |
| E-ANND-3 | yes | 11.21 |
| E-MTAB-5061 | yes | 8.88 |
| E-MTAB-7303 | no | 281.80 |
| E-MTAB-7249 | no | 78.58 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
36 targeting APOL2, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-3613-3P | 100.00 | 76.36 | 7965 |
| HSA-MIR-3925-3P | 100.00 | 69.95 | 1237 |
| HSA-MIR-371B-5P | 99.99 | 75.34 | 4759 |
| HSA-MIR-373-5P | 99.98 | 75.36 | 4753 |
| HSA-MIR-616-5P | 99.98 | 75.58 | 4775 |
| HSA-MIR-6783-3P | 99.89 | 67.92 | 2059 |
| HSA-MIR-1343-3P | 99.89 | 66.78 | 1815 |
| HSA-MIR-136-5P | 99.50 | 67.26 | 1153 |
| HSA-MIR-20A-3P | 99.44 | 69.10 | 1575 |
| HSA-MIR-548AV-3P | 99.43 | 68.50 | 1721 |
| HSA-MIR-584-3P | 99.35 | 67.69 | 1082 |
| HSA-MIR-3064-5P | 99.26 | 66.13 | 1497 |
| HSA-MIR-3085-3P | 99.26 | 66.16 | 1490 |
| HSA-MIR-6504-5P | 99.26 | 65.95 | 1487 |
| HSA-MIR-5690 | 99.25 | 67.58 | 1012 |
| HSA-MIR-3199 | 99.17 | 65.19 | 696 |
| HSA-MIR-8052 | 99.17 | 65.01 | 719 |
| HSA-MIR-6749-3P | 99.00 | 65.73 | 1443 |
| HSA-MIR-1207-3P | 98.99 | 66.22 | 1532 |
| HSA-MIR-939-3P | 98.97 | 65.07 | 2347 |
| HSA-MIR-6737-3P | 98.95 | 68.56 | 1577 |
| HSA-MIR-7157-3P | 98.95 | 68.70 | 1582 |
| HSA-MIR-330-5P | 98.73 | 67.63 | 1788 |
| HSA-MIR-4290 | 98.51 | 65.17 | 907 |
| HSA-MIR-6764-3P | 98.44 | 67.64 | 1153 |
| HSA-MIR-6824-3P | 98.44 | 67.62 | 1154 |
| HSA-MIR-326 | 98.25 | 66.44 | 1565 |
| HSA-MIR-4518 | 98.12 | 66.82 | 1030 |
| HSA-MIR-1266-5P | 97.71 | 66.92 | 1052 |
| HSA-MIR-4288 | 97.11 | 67.23 | 1636 |
Literature-anchored findings (GeneRIF, showing 6)
- APOL2 has been found only in humans and African green monkeys (PMID:11944986)
- An association of APOL1, 2 and 4 with schizophrenia was establised. (PMID:18632255)
- Results reveal a novel function for ApoL2 in conferring anti-apoptotic ability of human bronchial epithelium to the cytotoxic effects of IFN-gamma, in maintaining airway epithelial layer integrity. (PMID:20665705)
- Apolipoprotein L2 contains a BH3-like domain but it does not behave as a BH3-only protein. (PMID:24901046)
- Epigenetic aging is accelerated in alcohol use disorder and regulated by genetic variation in APOL2. (PMID:31466081)
- Structures of the ApoL1 and ApoL2 N-terminal domains reveal a non-classical four-helix bundle motif. (PMID:34316015)
Cross-species orthologs
13 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | apol | ENSDARG00000073718 |
| mus_musculus | Apol10b | ENSMUSG00000050014 |
| mus_musculus | Apol10a | ENSMUSG00000050982 |
| mus_musculus | Apol9a | ENSMUSG00000057346 |
| mus_musculus | Apol9b | ENSMUSG00000068246 |
| mus_musculus | Apol11a | ENSMUSG00000091650 |
| mus_musculus | Apol11b | ENSMUSG00000091694 |
| rattus_norvegicus | Apol9a | ENSRNOG00000023410 |
| rattus_norvegicus | Apol3l1 | ENSRNOG00000042771 |
| rattus_norvegicus | LOC120093819 | ENSRNOG00000069032 |
| rattus_norvegicus | ENSRNOG00000081988 | |
| caenorhabditis_elegans | WBGENE00017219 | |
| caenorhabditis_elegans | WBGENE00017220 |
Paralogs (6): APOL4 (ENSG00000100336), APOL1 (ENSG00000100342), APOL3 (ENSG00000128284), APOL5 (ENSG00000128313), APOLD1 (ENSG00000178878), APOL6 (ENSG00000221963)
Protein
Protein identifiers
Apolipoprotein L2 — Q9BQE5 (reviewed: Q9BQE5)
Alternative names: Apolipoprotein L-II
All UniProt accessions (4): Q9BQE5, B0QYK8, E9PM95, J3KQL8
UniProt curated annotations — full annotation on UniProt →
Function. May affect the movement of lipids in the cytoplasm or allow the binding of lipids to organelles.
Subcellular location. Cytoplasm.
Tissue specificity. Widely expressed; the highest levels are found in lung, thymus, pancreas, placenta, adult brain and prostate; also detected in spleen, liver, kidney, colon, small intestine, uterus, spinal cord, adrenal gland, salivary gland, trachea, mammary gland, skeletal muscle, testis and fetal brain and liver.
Similarity. Belongs to the apolipoprotein L family.
RefSeq proteins (2): NP_112092, NP_663612 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR008405 | ApoL | Family |
Pfam: PF05461
UniProt features (10 total): helix 4, modified residue 2, sequence variant 2, chain 1, sequence conflict 1
Structure
Experimental structures (PDB)
1 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 7LF8 | X-RAY DIFFRACTION | 2.15 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q9BQE5-F1 | 54.04 | 0.00 |
Antibody-complex structures (SAbDab): 1 — 7LF8
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (2): 1, 250
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 148 (showing top):
GOBP_INFLAMMATORY_RESPONSE, GOBP_LIPOPROTEIN_METABOLIC_PROCESS, BLALOCK_ALZHEIMERS_DISEASE_UP, GOBP_LIPID_METABOLIC_PROCESS, GOBP_MULTI_MULTICELLULAR_ORGANISM_PROCESS, GOBP_MATERNAL_PROCESS_INVOLVED_IN_FEMALE_PREGNANCY, GOMF_SIGNALING_RECEPTOR_BINDING, GOBP_LIPID_LOCALIZATION, GOBP_STEROID_METABOLIC_PROCESS, GOBP_ACUTE_PHASE_RESPONSE, ACEVEDO_LIVER_CANCER_WITH_H3K27ME3_DN, GOBP_ALCOHOL_METABOLIC_PROCESS, GOCC_NUCLEAR_OUTER_MEMBRANE_ENDOPLASMIC_RETICULUM_MEMBRANE_NETWORK, GOCC_ORGANELLE_SUBCOMPARTMENT, GOMF_PROTEIN_LIPID_COMPLEX_BINDING
GO Biological Process (6): lipid metabolic process (GO:0006629), lipid transport (GO:0006869), acute-phase response (GO:0006953), cholesterol metabolic process (GO:0008203), lipoprotein metabolic process (GO:0042157), maternal process involved in female pregnancy (GO:0060135)
GO Molecular Function (4): signaling receptor binding (GO:0005102), high-density lipoprotein particle binding (GO:0008035), lipid binding (GO:0008289), protein binding (GO:0005515)
GO Cellular Component (4): extracellular region (GO:0005576), endoplasmic reticulum membrane (GO:0005789), membrane (GO:0016020), cytoplasm (GO:0005737)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 3 |
| binding | 2 |
| primary metabolic process | 1 |
| transport | 1 |
| lipid localization | 1 |
| acute inflammatory response | 1 |
| sterol metabolic process | 1 |
| secondary alcohol metabolic process | 1 |
| protein metabolic process | 1 |
| female pregnancy | 1 |
| multicellular organismal reproductive process | 1 |
| protein binding | 1 |
| lipoprotein particle binding | 1 |
| organelle membrane | 1 |
| nuclear outer membrane-endoplasmic reticulum membrane network | 1 |
| endoplasmic reticulum subcompartment | 1 |
| intracellular anatomical structure | 1 |
Protein interactions and networks
STRING
652 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| APOL2 | COMT | P21964 | 671 |
| APOL2 | CGB5 | P01233 | 524 |
| APOL2 | SNRPB2 | P08579 | 512 |
| APOL2 | PRODH | O43272 | 490 |
| APOL2 | CHRM4 | P08173 | 490 |
| APOL2 | PRODH | O43272 | 467 |
| APOL2 | TNFRSF10A | O00220 | 464 |
| APOL2 | PLAAT2 | Q9NWW9 | 456 |
| APOL2 | CGB5 | P01233 | 447 |
| APOL2 | PDE4B | Q07343 | 423 |
| APOL2 | OR2AK2 | Q8NG84 | 414 |
| APOL2 | MYH9 | P35579 | 400 |
| APOL2 | PXT1 | Q8NFP0 | 400 |
| APOL2 | P2RY11 | Q96G91 | 397 |
| APOL2 | APOO | Q9BUR5 | 392 |
IntAct
158 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| GBP5 | GBP1 | psi-mi:“MI:0914”(association) | 0.720 |
| CFTR | ESYT2 | psi-mi:“MI:0914”(association) | 0.710 |
| APOL2 | TMEM179B | psi-mi:“MI:0915”(physical association) | 0.560 |
| APOL2 | ERGIC3 | psi-mi:“MI:0915”(physical association) | 0.560 |
| APOL2 | MFF | psi-mi:“MI:0915”(physical association) | 0.560 |
| STX2 | APOL2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| STX1A | APOL2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| ITGB2 | APOL2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| TMED8 | APOL2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| MARCHF3 | APOL2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| APOL2 | SLC26A6 | psi-mi:“MI:0915”(physical association) | 0.560 |
| APOL2 | SIT1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| APOC4 | APOL2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| SLC18A1 | APOL2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| GET1 | APOL2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| APOL2 | USE1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| APOL2 | AIG1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| PANX1 | APOL2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| APOL2 | TMEM60 | psi-mi:“MI:0915”(physical association) | 0.560 |
| TMEM45B | APOL2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| CYBC1 | APOL2 | psi-mi:“MI:0915”(physical association) | 0.560 |
BioGRID (146): APOL2 (Affinity Capture-MS), APOL2 (Affinity Capture-MS), APOL2 (Affinity Capture-MS), UBB (Affinity Capture-MS), APOL2 (Affinity Capture-MS), APOL2 (Affinity Capture-MS), APOL2 (Affinity Capture-MS), APOL2 (Proximity Label-MS), APOL2 (Proximity Label-MS), BSG (Affinity Capture-MS), UBL4A (Affinity Capture-MS), FAM127A (Affinity Capture-MS), MAST3 (Affinity Capture-MS), APOL2 (Affinity Capture-MS), APOL2 (Affinity Capture-MS)
ESM2 similar proteins: A0A140LIF8, A0JN92, A7UHZ5, O08602, O08603, O08604, O14791, O15482, O77812, O95236, P01574, P01575, P01576, P01577, P01578, P05012, P59045, P70499, Q2KHK6, Q3B7D9, Q3TR54, Q3UQS2, Q56XQ0, Q5NCI0, Q5PPP4, Q5RFJ8, Q60766, Q6AYC2, Q6XZW6, Q6ZSC3, Q7TPX8, Q80ZF2, Q810Y8, Q86WN2, Q8BVM9, Q8CB12, Q8CCN1, Q8TCY9, Q99388, Q99J64
Diamond homologs: O14791, O95236, Q9BPW4, Q9BQE5, Q9BWW8, Q9BWW9, Q96LR9
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
97 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 76 |
| Likely benign | 8 |
| Benign | 1 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
623 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 22:36231334:GCTTA:G | donor_loss | 1.0000 |
| 22:36231335:CTTA:C | donor_loss | 1.0000 |
| 22:36231336:TTAC:T | donor_loss | 1.0000 |
| 22:36231337:TA:T | donor_loss | 1.0000 |
| 22:36231338:A:AC | donor_gain | 1.0000 |
| 22:36231339:C:CC | donor_gain | 1.0000 |
| 22:36231463:CTCT:C | acceptor_gain | 1.0000 |
| 22:36231465:CT:C | acceptor_gain | 1.0000 |
| 22:36231471:T:TC | acceptor_gain | 1.0000 |
| 22:36233241:CCT:C | acceptor_gain | 1.0000 |
| 22:36239436:CTTA:C | donor_loss | 1.0000 |
| 22:36239437:TTA:T | donor_loss | 1.0000 |
| 22:36239438:TACCA:T | donor_loss | 1.0000 |
| 22:36239439:A:AC | donor_gain | 1.0000 |
| 22:36239439:ACCAA:A | donor_loss | 1.0000 |
| 22:36239440:C:A | donor_loss | 1.0000 |
| 22:36239440:C:CC | donor_gain | 1.0000 |
| 22:36239451:T:TA | donor_gain | 1.0000 |
| 22:36228276:CATCC:C | acceptor_gain | 0.9900 |
| 22:36228278:TCCCT:T | acceptor_loss | 0.9900 |
| 22:36228279:CC:C | acceptor_gain | 0.9900 |
| 22:36228280:CC:C | acceptor_gain | 0.9900 |
| 22:36228281:C:CC | acceptor_gain | 0.9900 |
| 22:36228281:CT:C | acceptor_loss | 0.9900 |
| 22:36228282:T:A | acceptor_loss | 0.9900 |
| 22:36231339:CCT:C | donor_gain | 0.9900 |
| 22:36231467:C:CC | acceptor_gain | 0.9900 |
| 22:36231467:CTA:C | acceptor_loss | 0.9900 |
| 22:36231471:T:C | acceptor_gain | 0.9900 |
| 22:36233147:GCCTA:G | donor_loss | 0.9900 |
AlphaMissense
2199 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 22:36228163:A:C | F85L | 0.973 |
| 22:36228163:A:T | F85L | 0.973 |
| 22:36228165:A:G | F85L | 0.973 |
| 22:36231374:A:G | W35R | 0.967 |
| 22:36231374:A:T | W35R | 0.967 |
| 22:36231372:C:A | W35C | 0.965 |
| 22:36231372:C:G | W35C | 0.965 |
| 22:36227478:C:G | A314P | 0.941 |
| 22:36228175:A:C | F81L | 0.934 |
| 22:36228175:A:T | F81L | 0.934 |
| 22:36228177:A:G | F81L | 0.934 |
| 22:36231373:C:G | W35S | 0.926 |
| 22:36231353:C:G | A42P | 0.920 |
| 22:36228176:A:G | F81S | 0.911 |
| 22:36227525:A:G | L298S | 0.908 |
| 22:36227489:A:G | L310P | 0.905 |
| 22:36227456:A:G | L321P | 0.904 |
| 22:36227983:A:C | S145R | 0.904 |
| 22:36227983:A:T | S145R | 0.904 |
| 22:36227985:T:G | S145R | 0.904 |
| 22:36228111:C:G | A103P | 0.904 |
| 22:36228050:A:T | V123D | 0.903 |
| 22:36228143:A:G | L92P | 0.903 |
| 22:36231363:G:C | F38L | 0.901 |
| 22:36231363:G:T | F38L | 0.901 |
| 22:36231364:A:G | F38S | 0.901 |
| 22:36231365:A:G | F38L | 0.901 |
| 22:36227468:A:G | L317P | 0.899 |
| 22:36227447:A:G | L324P | 0.896 |
| 22:36228164:A:G | F85S | 0.896 |
dbSNP variants (sampled 300 via entrez): RS1000093192 (22:36232581 A>G), RS1000145457 (22:36230496 A>G), RS1000271114 (22:36238514 G>A), RS1000609678 (22:36227887 T>C), RS1000816631 (22:36232921 G>A,C), RS1000876793 (22:36237227 G>A), RS1001001929 (22:36231584 T>G), RS1001293 (22:36234903 C>T), RS1001294 (22:36234944 C>A,T), RS1001539314 (22:36227054 G>A,T), RS1001548718 (22:36232497 G>C,T), RS1001553409 (22:36233454 T>A,C), RS1001720734 (22:36228412 GAATT>G), RS1001778799 (22:36238138 T>A,C), RS1001801906 (22:36238850 C>T)
Disease associations
OMIM: gene MIM:607252 | disease phenotypes:
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| schizophrenia | No Known Disease Relationship | Autosomal dominant |
Mondo (1): schizophrenia (MONDO:0005090)
Orphanet (0):
HPO phenotypes
7 total (7 of 7 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000738 | Hallucinations |
| HP:0000746 | Delusion |
| HP:0002353 | EEG abnormality |
| HP:0007086 | Social and occupational deterioration |
| HP:0100753 | Schizophrenia |
| HP:0410291 | Negativism |
GWAS associations
2 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST008748_1 | Epigenetic age acceleration in alcohol use disorder | 5.000000e-08 |
| GCST008748_7 | Epigenetic age acceleration in alcohol use disorder | 4.000000e-07 |
EFO canonical traits (2, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0000473 | epigenetic status |
| EFO:0022597 | aging |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
47 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| sodium arsenite | affects cotreatment, increases abundance, increases expression | 2 |
| manganese chloride | affects cotreatment, increases abundance, increases expression | 2 |
| Manganese | increases expression, affects cotreatment, increases abundance | 2 |
| Nickel | increases expression | 2 |
| aristolochic acid I | increases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| bisphenol A | increases expression | 1 |
| pyrogallol 1,3-dimethyl ether | increases expression, affects cotreatment, affects localization | 1 |
| ethyl-p-hydroxybenzoate | decreases expression | 1 |
| trichostatin A | decreases expression | 1 |
| arsenite | affects binding, increases reaction | 1 |
| tris(1,3-dichloro-2-propyl)phosphate | decreases expression | 1 |
| cobaltous chloride | increases expression | 1 |
| nickel chloride | increases expression | 1 |
| perfluorooctanoic acid | decreases expression | 1 |
| potassium chromate(VI) | affects cotreatment, decreases expression | 1 |
| benazol P | affects expression | 1 |
| epigallocatechin gallate | affects cotreatment, decreases expression | 1 |
| perfluorooctane sulfonic acid | decreases expression | 1 |
| nutlin 3 | affects cotreatment, increases expression | 1 |
| bisphenol B | increases expression | 1 |
| abrine | decreases expression | 1 |
| jinfukang | affects cotreatment, increases expression | 1 |
| bisphenol AF | increases expression | 1 |
| Resveratrol | affects cotreatment, increases expression | 1 |
| Leflunomide | decreases expression | 1 |
| Acetaminophen | decreases expression | 1 |
| Air Pollutants | increases abundance, increases expression | 1 |
| Arsenic | affects cotreatment, increases abundance, increases expression | 1 |
| Cannabinoids | increases expression | 1 |
Cellosaurus cell lines
2 cell lines: 2 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_B1EJ | Abcam A-549 APOL2 KO 2 | Cancer cell line | Male |
| CVCL_B2M2 | Abcam A-549 APOL2 KO 1 | Cancer cell line | Male |
Clinical trials (associated diseases)
300 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00000374 | PHASE4 | COMPLETED | Treatment for First-Episode Schizophrenia |
| NCT00001656 | PHASE4 | COMPLETED | Comparison of Clozapine vs Olanzapine in Childhood-Onset Psychotic Disorders |
| NCT00007774 | PHASE4 | COMPLETED | To Determine if Olanzapine is More Cost Effective Than Haloperidol for the Treatment of Schizophrenia |
| NCT00014001 | PHASE4 | COMPLETED | CATIE- Schizophrenia Trial |
| NCT00018668 | PHASE4 | COMPLETED | Antipsychotic Response in Schizophrenia |
| NCT00034801 | PHASE4 | COMPLETED | Olanzapine Versus Active Comparator in the Treatment of Depression in Patients With Schizophrenia |
| NCT00034905 | PHASE4 | COMPLETED | A Comparison of Seroquel vs. Risperidone in Schizophrenia |
| NCT00036088 | PHASE4 | COMPLETED | Olanzapine Versus An Active Comparator in the Treatment of Schizophrenia |
| NCT00044187 | PHASE4 | COMPLETED | The Assessment of a Weight-Gain Agent for the Treatment of Olanzapine-Associated Anti-Obesity Agent in Patients With Schizophrenia, Schizophreniform Disorder, Schizoaffective Disorder, and Bipolar I Disorder |
| NCT00044655 | PHASE4 | COMPLETED | Switching Medication to Treat Schizophrenia |
| NCT00048828 | PHASE4 | COMPLETED | Treating Drug-Resistant Childhood Schizophrenia |
| NCT00053703 | PHASE4 | COMPLETED | Treatment of Early Onset Schizophrenia Spectrum Disorders (TEOSS) |
| NCT00056498 | PHASE4 | COMPLETED | Risperidone Treatment in Schizophrenia Patients Who Are Currently Taking Clozapine |
| NCT00061802 | PHASE4 | COMPLETED | Efficacy and Safety of Two Atypical Antipsychotics vs. Placebo in Patients With an Acute Exacerbation of Either Schizophrenia or Schizoaffective Disorder |
| NCT00080327 | PHASE4 | COMPLETED | Study of Three Doses of Aripiprazole in Patients With Acute Schizophrenia |
| NCT00088049 | PHASE4 | COMPLETED | Study of Olanzapine vs. Aripiprazole in the Treatment of Schizophrenia |
| NCT00090012 | PHASE4 | COMPLETED | Comparison of Continuing Olanzapine to Switching to Quetiapine in Overweight or Obese Patients With Schizophrenia and Schizoaffective Disorder |
| NCT00100776 | PHASE4 | COMPLETED | Efficacy of High Dose Olanzapine for the Treatment of Schizophrenia and Schizoaffective Disorder |
| NCT00103571 | PHASE4 | COMPLETED | Olanzapine Versus Aripiprazole in the Treatment of Acutely Ill Patients With Schizophrenia |
| NCT00108368 | PHASE4 | COMPLETED | The Effects of Risperidone and Olanzapine on Thinking |
| NCT00114595 | PHASE4 | COMPLETED | Ethyl-Eicosapentaenoic Acid and Tardive Dyskinesia |
| NCT00130923 | PHASE4 | COMPLETED | Risperidone Long-acting Versus Oral Risperidone in Patients With Schizophrenia and Alcohol Use Disorder |
| NCT00137020 | PHASE4 | COMPLETED | Clinical Effect Of Cross Titration Of Antipsychotics With Ziprasidone In Schizophrenia Or Schizoaffective Disorder |
| NCT00140166 | PHASE4 | COMPLETED | Treatment of Acute Schizophrenia With Vitamin Therapy |
| NCT00145847 | PHASE4 | COMPLETED | Naltrexone Treatment of Alcohol Abuse in Schizophrenia |
| NCT00148564 | PHASE4 | COMPLETED | Energy Homeostasis Under Treatment With Atypical Antipsychotics |
| NCT00156715 | PHASE4 | COMPLETED | Efficacy of Quetiapine in the Treatment of Patients With Schizophrenia and a Comorbid Substance Use Disorder |
| NCT00158223 | PHASE4 | COMPLETED | Effectiveness of Pimozide in Augmenting the Effects of Clozapine in the Treatment of Schizophrenia |
| NCT00159081 | PHASE4 | COMPLETED | One Year Drug Treatment in First-Episode Schizophrenia |
| NCT00159120 | PHASE4 | COMPLETED | Maintenance Treatment vs. Stepwise Drug Discontinuation in First-Episode Schizophrenia |
| NCT00159133 | PHASE4 | COMPLETED | Prodrome-Based Early Intervention With Antipsychotics vs. Benzodiazepines in First-Episode Schizophrenia |
| NCT00159757 | PHASE4 | TERMINATED | 12 Week Open, Non-Comparative Switch Study Of Oral Ziprazidone In Previously Treated Schizophrenic Patients |
| NCT00167817 | PHASE4 | COMPLETED | Effect of Switch to Aripiprazole on Health and Smoking Parameters in Patients With Schizophrenia: A Pilot Study |
| NCT00169026 | PHASE4 | TERMINATED | Alcoholism and Schizophrenia: Effects of Clozapine |
| NCT00169039 | PHASE4 | TERMINATED | Clozapine Versus Chlorpromazine for Treatment-Unresponsive Schizophrenia |
| NCT00169065 | PHASE4 | COMPLETED | Effectiveness of Clozapine Versus Olanzapine for Treatment-resistant Schizophrenia |
| NCT00169091 | PHASE4 | TERMINATED | Clozapine Versus Haloperidol for Treating the First Episode of Schizophrenia |
| NCT00176423 | PHASE4 | COMPLETED | Efficacy Study of Galantamine for Cognitive Impairments in Schizophrenia |
| NCT00176436 | PHASE4 | COMPLETED | Atomoxetine for Treatment of Weight Gain in Olanzapine or Clozapine Patients |
| NCT00177008 | PHASE4 | COMPLETED | Aripiprazole for the Treatment of Schizophrenia With Co-Morbid Social Anxiety |
Related Atlas pages
- Associated diseases: schizophrenia