APOLD1
geneOn this page
Also known as FLJ25138DKFZP434F0318
Summary
APOLD1 (apolipoprotein L domain containing 1, HGNC:25268) is a protein-coding gene on chromosome 12p13.1, encoding Apolipoprotein L domain-containing protein 1 (Q96LR9). Is a modulator of endothelial barrier permeability, required for proper organization of endothelial cell-cell junctions and cytoskeleton.
APOLD1 is an endothelial cell early response protein that may play a role in regulation of endothelial cell signaling and vascular function (Regard et al., 2004 [PubMed 15102925]).
Source: NCBI Gene 81575 — RefSeq curated summary.
At a glance
- Gene–disease (curated): bleeding disorder, vascular-type (Moderate, GenCC) — +1 more curated relationship
- GWAS associations: 30
- Clinical variants (ClinVar): 73 total — 5 pathogenic
- Phenotypes (HPO): 9
- MANE Select transcript:
NM_030817
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:25268 |
| Approved symbol | APOLD1 |
| Name | apolipoprotein L domain containing 1 |
| Location | 12p13.1 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | FLJ25138, DKFZP434F0318 |
| Ensembl gene | ENSG00000178878 |
| Ensembl biotype | protein_coding |
| OMIM | 612456 |
| Entrez | 81575 |
Gene structure
Transcript identifiers
Ensembl transcripts: 6 — 3 protein_coding, 2 nonsense_mediated_decay, 1 retained_intron
ENST00000326765, ENST00000356591, ENST00000534843, ENST00000540583, ENST00000588943, ENST00000895456
RefSeq mRNA: 2 — MANE Select: NM_030817
NM_001130415, NM_030817
CCDS: CCDS44833, CCDS8654
Canonical transcript exons
ENST00000356591 — 2 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001745474 | 12785659 | 12785694 |
| ENSE00001911208 | 12786909 | 12791466 |
Expression profiles
Bgee: expression breadth ubiquitous, 270 present calls, max score 99.81.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 9.3417 / max 576.9283, expressed in 1233 samples.
FANTOM5 promoters (7 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 124363 | 49.7166 | 1815 |
| 124360 | 6.7172 | 392 |
| 124356 | 1.3830 | 739 |
| 124357 | 0.6084 | 290 |
| 124358 | 0.5834 | 287 |
| 206630 | 0.0281 | 4 |
| 124359 | 0.0216 | 8 |
Top tissues by expression
285 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| endothelial cell | CL:0000115 | 99.81 | gold quality |
| pericardium | UBERON:0002407 | 98.48 | gold quality |
| diaphragm | UBERON:0001103 | 96.55 | gold quality |
| omental fat pad | UBERON:0010414 | 95.79 | gold quality |
| peritoneum | UBERON:0002358 | 95.72 | gold quality |
| lower lobe of lung | UBERON:0008949 | 95.64 | gold quality |
| adipose tissue of abdominal region | UBERON:0007808 | 95.20 | gold quality |
| mucosa of urinary bladder | UBERON:0001259 | 95.18 | gold quality |
| subcutaneous adipose tissue | UBERON:0002190 | 94.56 | gold quality |
| choroid plexus epithelium | UBERON:0003911 | 93.51 | gold quality |
| left uterine tube | UBERON:0001303 | 93.36 | gold quality |
| olfactory bulb | UBERON:0002264 | 93.33 | gold quality |
| inferior olivary complex | UBERON:0002127 | 92.94 | gold quality |
| dorsal motor nucleus of vagus nerve | UBERON:0002870 | 92.65 | gold quality |
| adipose tissue | UBERON:0001013 | 92.55 | gold quality |
| gall bladder | UBERON:0002110 | 92.01 | gold quality |
| heart right ventricle | UBERON:0002080 | 91.98 | gold quality |
| medial globus pallidus | UBERON:0002477 | 91.78 | gold quality |
| tibialis anterior | UBERON:0001385 | 91.77 | gold quality |
| connective tissue | UBERON:0002384 | 91.62 | gold quality |
| left lobe of thyroid gland | UBERON:0001120 | 91.39 | gold quality |
| thyroid gland | UBERON:0002046 | 91.22 | gold quality |
| tibial artery | UBERON:0007610 | 91.17 | gold quality |
| popliteal artery | UBERON:0002250 | 91.13 | gold quality |
| pleura | UBERON:0000977 | 90.77 | gold quality |
| mucosa of stomach | UBERON:0001199 | 90.66 | gold quality |
| pigmented layer of retina | UBERON:0001782 | 90.64 | gold quality |
| visceral pleura | UBERON:0002401 | 90.58 | gold quality |
| parietal pleura | UBERON:0002400 | 90.27 | gold quality |
| smooth muscle tissue | UBERON:0001135 | 90.07 | gold quality |
Single-cell (SCXA)
Detected in 6 experiment(s), a significant marker in 6.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-GEOD-84465 | yes | 736.61 |
| E-GEOD-135922 | yes | 28.52 |
| E-GEOD-137537 | yes | 7.40 |
| E-MTAB-10553 | yes | 6.59 |
| E-GEOD-130148 | yes | 4.33 |
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
125 targeting APOLD1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-7110-3P | 100.00 | 73.18 | 2486 |
| HSA-MIR-5692A | 100.00 | 74.40 | 6850 |
| HSA-MIR-6873-3P | 100.00 | 71.42 | 2626 |
| HSA-MIR-3613-3P | 100.00 | 76.36 | 7965 |
| HSA-MIR-3646 | 100.00 | 73.56 | 5283 |
| HSA-MIR-4795-3P | 100.00 | 74.62 | 4024 |
| HSA-MIR-3662 | 99.99 | 73.82 | 5684 |
| HSA-MIR-371B-5P | 99.99 | 75.34 | 4759 |
| HSA-MIR-8068 | 99.98 | 73.85 | 2376 |
| HSA-MIR-373-5P | 99.98 | 75.36 | 4753 |
| HSA-MIR-616-5P | 99.98 | 75.58 | 4775 |
| HSA-MIR-607 | 99.97 | 73.62 | 5593 |
| HSA-MIR-3605-5P | 99.96 | 67.12 | 932 |
| HSA-MIR-493-5P | 99.96 | 72.47 | 2382 |
| HSA-MIR-128-3P | 99.95 | 71.17 | 2484 |
| HSA-MIR-216A-3P | 99.95 | 71.19 | 2505 |
| HSA-MIR-23A-3P | 99.95 | 74.24 | 3163 |
| HSA-MIR-23B-3P | 99.95 | 74.24 | 3163 |
| HSA-MIR-23C | 99.95 | 73.92 | 3192 |
| HSA-MIR-651-3P | 99.94 | 73.48 | 5177 |
| HSA-MIR-335-3P | 99.93 | 73.36 | 4958 |
| HSA-MIR-1305 | 99.91 | 71.43 | 3443 |
| HSA-MIR-589-3P | 99.91 | 69.62 | 2088 |
| HSA-MIR-4493 | 99.90 | 66.48 | 977 |
| HSA-MIR-95-5P | 99.89 | 72.17 | 3973 |
| HSA-MIR-3681-3P | 99.88 | 70.46 | 2254 |
| HSA-MIR-3919 | 99.87 | 69.45 | 2489 |
| HSA-MIR-221-3P | 99.86 | 71.56 | 1329 |
| HSA-MIR-222-3P | 99.86 | 71.35 | 1337 |
| HSA-MIR-629-3P | 99.85 | 67.99 | 1875 |
Literature-anchored findings (GeneRIF, showing 1)
- APOLD1 loss causes endothelial dysfunction involving cell junctions, cytoskeletal architecture, and Weibel-Palade bodies, while disrupting hemostasis. (PMID:35638551)
Cross-species orthologs
8 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | apol1 | ENSDARG00000007425 |
| danio_rerio | apold1a | ENSDARG00000023185 |
| danio_rerio | apold1b | ENSDARG00000068030 |
| danio_rerio | si:cabz01007807.1 | ENSDARG00000089961 |
| mus_musculus | Apold1 | ENSMUSG00000090698 |
| rattus_norvegicus | Apold1 | ENSRNOG00000007830 |
| caenorhabditis_elegans | WBGENE00017219 | |
| caenorhabditis_elegans | WBGENE00017220 |
Paralogs (6): APOL4 (ENSG00000100336), APOL1 (ENSG00000100342), APOL3 (ENSG00000128284), APOL5 (ENSG00000128313), APOL2 (ENSG00000128335), APOL6 (ENSG00000221963)
Protein
Protein identifiers
Apolipoprotein L domain-containing protein 1 — Q96LR9 (reviewed: Q96LR9)
Alternative names: Vascular early response gene protein
All UniProt accessions (3): A0AVN6, F5GX34, Q96LR9
UniProt curated annotations — full annotation on UniProt →
Function. Is a modulator of endothelial barrier permeability, required for proper organization of endothelial cell-cell junctions and cytoskeleton. It also plays a role in the modulation of secretory autophagy. May affect blood-brain barrier permeability.
Subcellular location. Cell membrane. Cell junction. Cytoplasmic vesicle. Secretory vesicle.
Tissue specificity. Expressed in neonatal dermal microvascular endothelial cells.
Disease relevance. Bleeding disorder, vascular-type (BDVAS) [MIM:620715] An autosomal dominant disorder characterized by increased bleeding tendency, without platelet dysfunction. Affected individuals experience spontaneous episodic bleeding, usually beginning in childhood. Clinical manifestations include epistaxis, oral cavity bleeding, menorrhagia, and excessive bleeding during surgery or childbirth. The disease may be caused by variants affecting the gene represented in this entry.
Induction. In neonatal dermal microvascular endothelial cells, by hypoxia.
Similarity. Belongs to the apolipoprotein L family.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q96LR9-1 | 1 | yes |
| Q96LR9-2 | 2 |
RefSeq proteins (2): NP_001123887, NP_110444* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR008405 | ApoL | Family |
Pfam: PF05461
UniProt features (9 total): transmembrane region 3, sequence variant 2, chain 1, coiled-coil region 1, splice variant 1, sequence conflict 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q96LR9-F1 | 61.17 | 0.00 |
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 223 (showing top):
GOBP_EPITHELIUM_DEVELOPMENT, WALLACE_PROSTATE_CANCER_RACE_UP, GOBP_LIPOPROTEIN_METABOLIC_PROCESS, GOCC_SECRETORY_GRANULE, GOBP_REGULATION_OF_ENDOTHELIAL_CELL_DIFFERENTIATION, AP4_Q6, GOBP_VESICLE_MEDIATED_TRANSPORT, CAGCTG_AP4_Q5, GOBP_REGULATION_OF_EPITHELIAL_CELL_DIFFERENTIATION, GOBP_EXOCYTOSIS, KMCATNNWGGA_UNKNOWN, GOCC_COATED_VESICLE, GOBP_BLOOD_VESSEL_MORPHOGENESIS, GOBP_ENDOTHELIUM_DEVELOPMENT, GOBP_SECRETION
GO Biological Process (6): angiogenesis (GO:0001525), lipid transport (GO:0006869), lipoprotein metabolic process (GO:0042157), regulation of endothelial cell differentiation (GO:0045601), regulation of membrane permeability (GO:0090559), autophagosome-dependent secretion (GO:0160192)
GO Molecular Function (1): lipid binding (GO:0008289)
GO Cellular Component (8): extracellular region (GO:0005576), plasma membrane (GO:0005886), cell-cell junction (GO:0005911), transport vesicle (GO:0030133), Weibel-Palade body (GO:0033093), membrane (GO:0016020), cytoplasmic vesicle (GO:0031410), anchoring junction (GO:0070161)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 2 |
| blood vessel morphogenesis | 1 |
| anatomical structure formation involved in morphogenesis | 1 |
| transport | 1 |
| lipid localization | 1 |
| protein metabolic process | 1 |
| regulation of epithelial cell differentiation | 1 |
| endothelial cell differentiation | 1 |
| regulation of biological quality | 1 |
| exocytosis | 1 |
| establishment of organelle localization | 1 |
| autophagosome localization | 1 |
| binding | 1 |
| membrane | 1 |
| cell periphery | 1 |
| anchoring junction | 1 |
| endomembrane system | 1 |
| cytoplasmic vesicle | 1 |
| clathrin-coated vesicle | 1 |
| secretory granule | 1 |
| cytoplasm | 1 |
| intracellular vesicle | 1 |
| cell junction | 1 |
Protein interactions and networks
STRING
804 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| APOLD1 | FGF13 | Q92913 | 513 |
| APOLD1 | FGF2 | P09038 | 447 |
| APOLD1 | GPRC5A | Q8NFJ5 | 445 |
| APOLD1 | SLC35F1 | Q5T1Q4 | 426 |
| APOLD1 | ZNF516 | Q92618 | 425 |
| APOLD1 | RTL9 | Q8NET4 | 424 |
| APOLD1 | SDK2 | Q58EX2 | 418 |
| APOLD1 | CDH4 | P55283 | 410 |
| APOLD1 | MANSC1 | Q9H8J5 | 393 |
| APOLD1 | BICC1 | Q9H694 | 392 |
| APOLD1 | SEMA5A | Q13591 | 375 |
| APOLD1 | CREBL2 | O60519 | 373 |
| APOLD1 | FAM234B | A2RU67 | 369 |
| APOLD1 | ITGB8 | P26012 | 369 |
| APOLD1 | COL4A2 | P08572 | 369 |
IntAct
0 interactions, top by confidence:
BioGRID (7): APOLD1 (Affinity Capture-MS), APOLD1 (Affinity Capture-MS), APOLD1 (Affinity Capture-MS), APOLD1 (Affinity Capture-RNA), APOLD1 (Affinity Capture-RNA), APOLD1 (Affinity Capture-RNA), APOLD1 (Affinity Capture-MS)
ESM2 similar proteins: A0A140LIF8, A0JN92, A1Z198, A6H5X4, D9I2F9, D9I2G1, D9I2G3, D9I2G4, D9I2H0, G1SRW8, O14791, O95236, P05012, P70499, Q0GKD5, Q19Q52, Q1WBT4, Q28C41, Q2LKU9, Q2LKV2, Q2LKV5, Q2LKW6, Q32KW9, Q3B7D9, Q56XQ0, Q5I0E2, Q5I0J8, Q5NCI0, Q5RFJ8, Q5ZJY9, Q60766, Q6AXZ4, Q6AYC2, Q6AYF9, Q6B959, Q6NTF7, Q6NXR0, Q810S1, Q8BVM9, Q8TCY9
Diamond homologs: Q6B959, Q96LR9, Q9BWW8, O14791, O95236, Q9BQE5, Q9BWW9
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
73 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 5 |
| Likely pathogenic | 0 |
| Uncertain significance | 60 |
| Likely benign | 0 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (5)
| Variant ID | HGVS | Classification |
|---|---|---|
| 146005 | GRCh38/hg38 12p13.2-12.3(chr12:12363649-15280588)x1 | Pathogenic |
| 2506545 | GRCh37/hg19 12p13.2-13.1(chr12:11463270-14019142) | Pathogenic |
| 563981 | GRCh37/hg19 12p13.2-13.1(chr12:10717428-14032860)x1 | Pathogenic |
| 57166 | GRCh38/hg38 12p13.2-13.1(chr12:11771233-13547775)x1 | Pathogenic |
| 58986 | GRCh38/hg38 12p13.2-12.3(chr12:12388842-15540422)x1 | Pathogenic |
SpliceAI
1452 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 12:12813428:G:GT | donor_gain | 1.0000 |
| 12:12813432:A:T | donor_gain | 1.0000 |
| 12:12813452:CTGGT:C | donor_loss | 1.0000 |
| 12:12813453:TGG:T | donor_loss | 1.0000 |
| 12:12813454:GGT:G | donor_loss | 1.0000 |
| 12:12813455:G:GG | donor_gain | 1.0000 |
| 12:12813455:G:T | donor_loss | 1.0000 |
| 12:12813456:T:G | donor_loss | 1.0000 |
| 12:12814128:A:AG | acceptor_gain | 1.0000 |
| 12:12814128:AAGG:A | acceptor_gain | 1.0000 |
| 12:12814129:A:G | acceptor_gain | 1.0000 |
| 12:12814130:GGGT:G | acceptor_gain | 1.0000 |
| 12:12814224:GGTA:G | donor_loss | 1.0000 |
| 12:12821204:TTAG:T | acceptor_loss | 1.0000 |
| 12:12821207:G:GT | acceptor_loss | 1.0000 |
| 12:12821392:GAGTG:G | donor_gain | 1.0000 |
| 12:12821393:AGTGG:A | donor_loss | 1.0000 |
| 12:12821394:GTG:G | donor_gain | 1.0000 |
| 12:12821394:GTGGT:G | donor_loss | 1.0000 |
| 12:12821395:TGGTA:T | donor_loss | 1.0000 |
| 12:12821396:GGTAA:G | donor_loss | 1.0000 |
| 12:12821397:G:C | donor_loss | 1.0000 |
| 12:12821398:T:A | donor_loss | 1.0000 |
| 12:12821950:A:AG | acceptor_gain | 1.0000 |
| 12:12821951:A:AG | acceptor_gain | 1.0000 |
| 12:12821952:C:G | acceptor_gain | 1.0000 |
| 12:12821959:T:TA | acceptor_gain | 1.0000 |
| 12:12821960:G:A | acceptor_gain | 1.0000 |
| 12:12821960:GGTA:G | acceptor_loss | 1.0000 |
| 12:12821961:GTAGC:G | acceptor_loss | 1.0000 |
AlphaMissense
1565 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 12:12787134:A:C | S108R | 0.989 |
| 12:12787136:C:A | S108R | 0.989 |
| 12:12787136:C:G | S108R | 0.989 |
| 12:12787195:C:A | A128D | 0.975 |
| 12:12787102:G:A | G97D | 0.968 |
| 12:12787123:G:A | G104E | 0.964 |
| 12:12787122:G:A | G104R | 0.963 |
| 12:12787122:G:C | G104R | 0.963 |
| 12:12787182:G:A | G124R | 0.962 |
| 12:12787182:G:C | G124R | 0.962 |
| 12:12787114:C:A | A101D | 0.955 |
| 12:12787183:G:A | G124E | 0.955 |
| 12:12787171:C:A | A120D | 0.954 |
| 12:12787177:G:A | G122E | 0.954 |
| 12:12787081:G:A | G90D | 0.953 |
| 12:12787189:C:A | A126D | 0.952 |
| 12:12787092:A:C | S94R | 0.951 |
| 12:12787094:C:A | S94R | 0.951 |
| 12:12787094:C:G | S94R | 0.951 |
| 12:12787176:G:A | G122R | 0.949 |
| 12:12787176:G:C | G122R | 0.949 |
| 12:12787198:G:A | G129E | 0.946 |
| 12:12787510:T:C | L233P | 0.945 |
| 12:12787207:T:A | V132D | 0.944 |
| 12:12787111:C:A | A100D | 0.941 |
| 12:12787204:C:A | A131D | 0.937 |
| 12:12787194:G:C | A128P | 0.935 |
| 12:12787117:T:A | I102N | 0.931 |
| 12:12787101:G:C | G97R | 0.930 |
| 12:12787522:T:C | L237P | 0.926 |
dbSNP variants (sampled 300 via entrez): RS1000020586 (12:12775704 AT>A,ATT), RS1000040322 (12:12775426 C>A), RS1000055864 (12:12743365 T>G), RS1000068014 (12:12783174 C>G), RS1000072639 (12:12748227 G>A), RS1000118542 (12:12728509 CAA>C,CA,CAAA), RS1000135310 (12:12789385 G>A), RS1000165030 (12:12772815 G>C), RS1000191935 (12:12741143 T>A,C), RS1000237481 (12:12737400 C>G), RS1000241672 (12:12748029 G>A,C), RS1000301977 (12:12734399 C>G), RS1000341934 (12:12787755 G>A,C,T), RS1000421402 (12:12731247 A>G), RS1000451813 (12:12740055 C>G)
Disease associations
OMIM: gene MIM:612456 | disease phenotypes: MIM:620715
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| bleeding disorder, vascular-type | Moderate | Autosomal dominant |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| inherited blood coagulation disorder | Limited | AD |
Mondo (3): breast ductal adenocarcinoma (MONDO:0005590), intellectual disability (MONDO:0001071), bleeding disorder, vascular-type (MONDO:0958229)
Orphanet (1): NON RARE IN EUROPE: Unexplained intellectual disability (Orphanet:319658)
HPO phenotypes
9 total (9 of 9 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000132 | Menorrhagia |
| HP:0000421 | Epistaxis |
| HP:0002239 | Gastrointestinal hemorrhage |
| HP:0006298 | Prolonged bleeding after dental extraction |
| HP:0011463 | Childhood onset |
| HP:0030880 | Raynaud phenomenon |
| HP:0033505 | Livedo reticularis |
| HP:0040184 | Oral bleeding |
GWAS associations
30 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST004627_141 | Lymphocyte count | 5.000000e-15 |
| GCST005146_59 | Birth weight | 2.000000e-08 |
| GCST005997_2 | Lymphocyte count | 2.000000e-08 |
| GCST006190_48 | Diastolic blood pressure x smoking status (ever vs never) interaction (2df test) | 9.000000e-14 |
| GCST006190_86 | Diastolic blood pressure x smoking status (ever vs never) interaction (2df test) | 3.000000e-07 |
| GCST006192_35 | Systolic blood pressure x smoking status (ever vs never) interaction (2df test) | 2.000000e-09 |
| GCST006192_69 | Systolic blood pressure x smoking status (ever vs never) interaction (2df test) | 4.000000e-15 |
| GCST006193_31 | Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test) | 9.000000e-11 |
| GCST006195_13 | Systolic blood pressure x smoking status (current vs non-current) interaction (2df test) | 9.000000e-08 |
| GCST006195_62 | Systolic blood pressure x smoking status (current vs non-current) interaction (2df test) | 5.000000e-13 |
| GCST006624_116 | Systolic blood pressure | 1.000000e-19 |
| GCST006979_886 | Heel bone mineral density | 7.000000e-14 |
| GCST007928_11 | Medication use (diuretics) | 2.000000e-10 |
| GCST008362_8 | Birth weight | 4.000000e-12 |
| GCST008839_546 | Height | 2.000000e-13 |
| GCST008860_2 | Prostate cancer | 6.000000e-12 |
| GCST009066_25 | Mosaic loss of chromosome Y (Y chromosome dosage) | 3.000000e-19 |
| GCST009067_20 | Mosaic loss of chromosome Y (Y chromosome dosage) | 3.000000e-15 |
| GCST010002_209 | Refractive error | 4.000000e-34 |
| GCST010703_173 | Brain morphology (MOSTest) | 4.000000e-11 |
| GCST012227_638 | Hip circumference adjusted for BMI | 1.000000e-08 |
| GCST012490_216 | Femur bone mineral density x serum urate levels interaction | 2.000000e-09 |
| GCST90002388_425 | Lymphocyte count | 3.000000e-31 |
| GCST90002389_386 | Lymphocyte percentage of white cells | 6.000000e-14 |
| GCST90002390_52 | Mean corpuscular hemoglobin | 4.000000e-09 |
| GCST90002392_374 | Mean corpuscular volume | 8.000000e-12 |
| GCST90002396_520 | Mean reticulocyte volume | 8.000000e-13 |
| GCST90002397_420 | Mean spheric corpuscular volume | 2.000000e-14 |
| GCST90002402_365 | Platelet count | 4.000000e-14 |
| GCST90002407_278 | White blood cell count | 9.000000e-15 |
EFO canonical traits (15, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004587 | lymphocyte count |
| EFO:0004344 | birth weight |
| EFO:0006336 | diastolic blood pressure |
| EFO:0006527 | smoking status measurement |
| EFO:0006335 | systolic blood pressure |
| EFO:0009270 | heel bone mineral density |
| EFO:0009928 | Diuretic use measurement |
| EFO:0007783 | mosaic loss of chromosome Y measurement |
| EFO:0004346 | neuroimaging measurement |
| EFO:0008039 | BMI-adjusted hip circumference |
| EFO:0004531 | urate measurement |
| EFO:0007993 | lymphocyte percentage of leukocytes |
| EFO:0004527 | mean corpuscular hemoglobin |
| EFO:0010701 | mean reticulocyte volume |
| EFO:0004309 | platelet count |
MeSH disease descriptors (2)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D018270 | Carcinoma, Ductal, Breast | C04.557.470.200.025.232.500; C04.557.470.615.132.500; C04.588.180.390; C17.800.090.500.390 |
| D008607 | Intellectual Disability | C10.597.606.360; C23.888.592.604.646; F01.700.687; F03.625.539 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
45 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects expression, increases expression | 4 |
| entinostat | affects cotreatment, decreases expression | 2 |
| Phenylmercuric Acetate | increases expression, affects cotreatment | 2 |
| Tobacco Smoke Pollution | increases expression, decreases expression | 2 |
| Triclosan | decreases expression, increases methylation | 2 |
| Particulate Matter | increases expression, decreases expression | 2 |
| aristolochic acid I | increases expression | 1 |
| aminomethylphosphonic acid (AMPA) | decreases expression | 1 |
| methylmercuric chloride | increases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| alpha-pinene | affects cotreatment, decreases expression, increases abundance | 1 |
| propionaldehyde | increases expression | 1 |
| bisphenol A | decreases methylation | 1 |
| 2-methyl-4-isothiazolin-3-one | decreases expression | 1 |
| tris(1,3-dichloro-2-propyl)phosphate | increases expression | 1 |
| sodium arsenite | increases expression | 1 |
| butyraldehyde | increases expression | 1 |
| methacrylaldehyde | affects cotreatment, decreases expression, increases abundance | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, decreases expression, increases expression | 1 |
| abrine | increases expression | 1 |
| dorsomorphin | affects cotreatment, decreases expression, increases expression | 1 |
| bisphenol S | increases methylation | 1 |
| jinfukang | affects cotreatment, increases expression | 1 |
| (+)-JQ1 compound | increases expression | 1 |
| Temozolomide | increases expression | 1 |
| Leflunomide | increases expression | 1 |
| Acetaminophen | increases expression | 1 |
| Acrolein | affects cotreatment, decreases expression, increases abundance | 1 |
| Air Pollutants | decreases expression, increases abundance, affects cotreatment | 1 |
Clinical trials (associated diseases)
208 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT05657860 | PHASE4 | COMPLETED | Guanfacine Extended Release for the Reduction of Aggression and Self-injurious Behavior Associated With Prader-Willi Syndrome |
| NCT05744479 | PHASE4 | RECRUITING | Metformin for Antipsychotic-induced Weight Gain in Adults With Intellectual Disability |
| NCT06107829 | PHASE4 | WITHDRAWN | Valbenazine Treatment of Tardive Dyskinesia in Adults With Intellectual/Developmental Disabilities |
| NCT06997198 | PHASE4 | NOT_YET_RECRUITING | Deutetrabenazine Treatment for Tardive Dyskinesia in Intellectual/Developmental Disabilities |
| NCT03414970 | PHASE3 | ACTIVE_NOT_RECRUITING | Hypofractionated Radiation Therapy After Mastectomy in Preventing Recurrence in Patients With Stage IIa-IIIa Breast Cancer |
| NCT02270736 | PHASE3 | COMPLETED | Clinical Study to Investigate the Efficacy and Safety of NT 201 Compared to Placebo in the Treatment of Chronic Troublesome Drooling Associated With Neurological Disorders and/or Intellectual Disability |
| NCT00461344 | PHASE2 | TERMINATED | Docetaxel + Doxorubicin as Neoadjuvant Chemotherapy in Patients With Breast Cancer |
| NCT07499999 | PHASE2 | NOT_YET_RECRUITING | Randomized Double-Blind Phase II Trial of Baby Exemestane Versus Baby Tamoxifen in Post-Menopausal Women at High Risk for Breast Cancer |
| NCT02304302 | PHASE2 | COMPLETED | Down Syndrome Memantine Follow-up Study |
| NCT03862950 | PHASE2 | COMPLETED | A Trial of Metformin in Individuals With Fragile X Syndrome (Met) |
| NCT04529226 | PHASE2 | UNKNOWN | Study to Compare Clozapine vs Treatment as Usual in People With Intellectual Disability & Treatment-resistant Psychosis |
| NCT04821856 | PHASE2 | COMPLETED | Evaluation of the Effectiveness of Cannabidiol in Treating Severe Behavioural Problems in Children and Adolescents With Intellectual Disability |
| NCT05273320 | PHASE1 | COMPLETED | Clinical Trial of Nabilone for Aggression in Adults With Intellectual and Developmental Disabilities |
| NCT05301361 | PHASE1 | ENROLLING_BY_INVITATION | Sensitivity of the NIH Toolbox to Stimulant Treatment in Intellectual Disabilities |
| NCT06016764 | PHASE1 | COMPLETED | Use of MRI and cTBS for Catatonia in Autism |
| NCT06586827 | PHASE1 | COMPLETED | Impact of Competency-Based Training and Technical Assistance Employment Outcomes of Individuals With ID/DD |
| NCT07531940 | PHASE1 | NOT_YET_RECRUITING | Escalating Doses of Memantine in Down Syndrome (MEDS-123) |
| NCT00637364 | PHASE1/PHASE2 | SUSPENDED | High Intensity Focused Ultrasound Tumor Treatment for Pancreatic Cancer Pain |
| NCT02779855 | PHASE1/PHASE2 | COMPLETED | Talimogene Laherparepvec in Combination With Neoadjuvant Chemotherapy in Triple Negative Breast Cancer |
| NCT01753908 | EARLY_PHASE1 | COMPLETED | Broccoli Sprout Extract in Treating Patients With Breast Cancer |
| NCT01796041 | EARLY_PHASE1 | COMPLETED | Intraoperative Imaging of Breast Cancer With Indocyanine Green |
| NCT01208974 | Not specified | ACTIVE_NOT_RECRUITING | Nipple-Areola Complex (NAC) Irradiation After Nipple-Sparing Mastectomy and Reconstruction |
| NCT01875198 | Not specified | TERMINATED | Oncologic Impact of Splenectomy-omitting Radical Pancreatectomy in Well-selected Left-sided Pancreatic Cancer |
| NCT03543397 | Not specified | UNKNOWN | MRI in Ductal Carcinoma in Situ (DCIS) |
| NCT03834532 | Not specified | COMPLETED | Living Well After Breast Surgery |
| NCT03479476 | PHASE2/PHASE3 | COMPLETED | A Trial of Metformin in Individuals With Fragile X Syndrome |
| NCT02616796 | PHASE1/PHASE2 | COMPLETED | Effects of Social Gaze Training on Brain and Behavior in Fragile X Syndrome |
| NCT06860672 | EARLY_PHASE1 | RECRUITING | Clinical Trial of the Dual Vector Base Editor for the Treatment of the CHD3-R1025W Mutation |
| NCT00597948 | Not specified | COMPLETED | Healthy Lifestyles for People With Intellectual Disabilities |
| NCT01087320 | Not specified | RECRUITING | Genome Medical Sequencing for Gene Discovery |
| NCT01652963 | Not specified | UNKNOWN | Picture-based Computerised Assessment and Training of Cognitive Behaviour Therapy Skills |
| NCT01695395 | Not specified | COMPLETED | Mental Health Care Provision for Adults With Intellectual Disability and a Mental Disorder |
| NCT01867554 | Not specified | COMPLETED | Research and Characterization of New Genes Involved in Intellectual Disability |
| NCT01915381 | Not specified | COMPLETED | Improving Adherence Healthy Lifestyle With a Smartphone Application Based on Adults With Intellectual Disabilities |
| NCT01988623 | Not specified | COMPLETED | Pivotal Response Treatment for Individuals With Intellectual Disabilities |
| NCT02099773 | Not specified | COMPLETED | Support Staff-client Interactions With Augmentative and Alternative Communication |
| NCT02136849 | Not specified | COMPLETED | Inter-regional Project of the Great Western Exploration Approach for Exome Molecular Causes Severe Intellectual Disability Isolated or Syndromic |
| NCT02225041 | Not specified | COMPLETED | Sedation Strategy and Cognitive Outcome After Critical Illness in Early Childhood |
| NCT02414438 | Not specified | COMPLETED | Establishing the Clinical Utility of First StepDx PLUS and NextStepDx PLUS Study |
| NCT02451761 | Not specified | COMPLETED | Apparently Balanced Chromosomal Translocation/ Next-generation Sequencing/ Intellectual Disability |
Related Atlas pages
- Associated diseases: bleeding disorder, vascular-type, inherited blood coagulation disorder
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): bleeding disorder, vascular-type