AREL1
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Also known as FIEL1
Summary
AREL1 (apoptosis resistant E3 ubiquitin protein ligase 1, HGNC:20363) is a protein-coding gene on chromosome 14q24.3, encoding Apoptosis-resistant E3 ubiquitin protein ligase 1 (O15033). E3 ubiquitin-protein ligase that catalyzes ‘Lys-11’- or ‘Lys-33’-linked polyubiquitin chains, with some preference for ‘Lys-33’ linkages.
Enables ubiquitin protein ligase activity. Involved in negative regulation of apoptotic process; protein polyubiquitination; and ubiquitin-dependent protein catabolic process. Located in cytosol.
Source: NCBI Gene 9870 — RefSeq curated summary.
At a glance
- GWAS associations: 5
- Clinical variants (ClinVar): 143 total
- Phenotypes (HPO): 1
- MANE Select transcript:
NM_001039479
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:20363 |
| Approved symbol | AREL1 |
| Name | apoptosis resistant E3 ubiquitin protein ligase 1 |
| Location | 14q24.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | FIEL1 |
| Ensembl gene | ENSG00000119682 |
| Ensembl biotype | protein_coding |
| OMIM | 615380 |
| Entrez | 9870 |
Gene structure
Transcript identifiers
Ensembl transcripts: 26 — 13 protein_coding, 5 nonsense_mediated_decay, 4 retained_intron, 4 protein_coding_CDS_not_defined
ENST00000356357, ENST00000469797, ENST00000481010, ENST00000553279, ENST00000554070, ENST00000554525, ENST00000555249, ENST00000555330, ENST00000556202, ENST00000556327, ENST00000556589, ENST00000556860, ENST00000557401, ENST00000557688, ENST00000680030, ENST00000681099, ENST00000681535, ENST00000681599, ENST00000880345, ENST00000880346, ENST00000880347, ENST00000880348, ENST00000919344, ENST00000919345, ENST00000919346, ENST00000951857
RefSeq mRNA: 2 — MANE Select: NM_001039479
NM_001039479, NM_001411046
CCDS: CCDS41971, CCDS91905
Canonical transcript exons
ENST00000356357 — 20 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001400828 | 74661256 | 74663822 |
| ENSE00001605395 | 74692041 | 74692328 |
| ENSE00002479769 | 74712933 | 74713080 |
| ENSE00003469963 | 74669947 | 74670126 |
| ENSE00003472605 | 74685600 | 74685660 |
| ENSE00003481000 | 74667319 | 74667377 |
| ENSE00003485692 | 74670762 | 74670871 |
| ENSE00003542117 | 74672831 | 74672952 |
| ENSE00003556538 | 74663899 | 74664074 |
| ENSE00003578500 | 74669649 | 74669774 |
| ENSE00003597725 | 74676583 | 74676752 |
| ENSE00003616587 | 74671408 | 74671483 |
| ENSE00003624442 | 74667465 | 74667594 |
| ENSE00003626781 | 74675699 | 74675946 |
| ENSE00003634154 | 74674034 | 74674111 |
| ENSE00003640611 | 74673077 | 74673218 |
| ENSE00003658133 | 74664836 | 74664925 |
| ENSE00003664484 | 74676141 | 74676321 |
| ENSE00003665463 | 74683296 | 74683533 |
| ENSE00003669612 | 74684454 | 74684680 |
Expression profiles
Bgee: expression breadth ubiquitous, 264 present calls, max score 92.13.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 15.9326 / max 255.3322, expressed in 1813 samples.
FANTOM5 promoters (1 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 144086 | 15.9326 | 1813 |
Top tissues by expression
287 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 92.13 | gold quality |
| cortical plate | UBERON:0005343 | 91.15 | gold quality |
| blood | UBERON:0000178 | 89.84 | gold quality |
| adrenal tissue | UBERON:0018303 | 89.76 | gold quality |
| stromal cell of endometrium | CL:0002255 | 89.09 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 88.74 | gold quality |
| leukocyte | CL:0000738 | 88.16 | gold quality |
| monocyte | CL:0000576 | 88.13 | gold quality |
| granulocyte | CL:0000094 | 88.07 | gold quality |
| mononuclear cell | CL:0000842 | 87.96 | gold quality |
| bone marrow cell | CL:0002092 | 87.96 | gold quality |
| rectum | UBERON:0001052 | 87.39 | gold quality |
| right lobe of thyroid gland | UBERON:0001119 | 87.06 | gold quality |
| bone marrow | UBERON:0002371 | 87.03 | gold quality |
| ileal mucosa | UBERON:0000331 | 87.02 | gold quality |
| left lobe of thyroid gland | UBERON:0001120 | 86.72 | gold quality |
| prefrontal cortex | UBERON:0000451 | 86.60 | gold quality |
| islet of Langerhans | UBERON:0000006 | 86.49 | gold quality |
| ganglionic eminence | UBERON:0004023 | 86.31 | gold quality |
| ventricular zone | UBERON:0003053 | 86.24 | gold quality |
| thyroid gland | UBERON:0002046 | 85.92 | gold quality |
| lower esophagus mucosa | UBERON:0035834 | 85.56 | gold quality |
| metanephros cortex | UBERON:0010533 | 85.51 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 85.33 | gold quality |
| gastrocnemius | UBERON:0001388 | 84.80 | gold quality |
| right frontal lobe | UBERON:0002810 | 84.76 | gold quality |
| muscle of leg | UBERON:0001383 | 84.74 | gold quality |
| left adrenal gland cortex | UBERON:0035825 | 84.68 | gold quality |
| upper lobe of left lung | UBERON:0008952 | 84.67 | gold quality |
| small intestine Peyer’s patch | UBERON:0003454 | 84.66 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 5.23 |
Regulation
Is transcription factor: no
Literature-anchored findings (GeneRIF, showing 4)
- new protein isoform encoded by KIAA0317, termed fibrosis-inducing E3 ligase 1 (FIEL1), which potently stimulates the TGFbeta signaling pathway through the site-specific ubiquitination of PIAS4. (PMID:27162139)
- The AREL1 HECT domain assembled Lys(33)-, Lys(48)-, and Lys(63)-linked polyubiquitin chains. E701A substitution in the AREL1 HECT domain substantially increased its autopolyubiquitination and SMAC ubiquitination activity, whereas deletion of the last three amino acids at the C terminus completely abrogated AREL1 autoubiquitination and reduced SMAC ubiquitination. (PMID:31732561)
- Epigenetic modulation of AREL1 and increased HLA expression in brains of multiple system atrophy patients. (PMID:32151281)
- AREL1 resists the apoptosis induced by TGF-beta by inhibiting SMAC in vascular endothelial cells. (PMID:37522329)
Cross-species orthologs
4 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | AREL1 | ENSDARG00000100359 |
| mus_musculus | Arel1 | ENSMUSG00000042350 |
| rattus_norvegicus | Arel1 | ENSRNOG00000004382 |
| drosophila_melanogaster | CG4238 | FBGN0031384 |
Paralogs (24): HECW1 (ENSG00000002746), UBE3C (ENSG00000009335), NEDD4L (ENSG00000049759), NEDD4 (ENSG00000069869), ITCH (ENSG00000078747), HACE1 (ENSG00000085382), HUWE1 (ENSG00000086758), HECTD1 (ENSG00000092148), UBR5 (ENSG00000104517), SMURF2 (ENSG00000108854), UBE3A (ENSG00000114062), WWP1 (ENSG00000123124), HERC2 (ENSG00000128731), HECW2 (ENSG00000138411), HERC3 (ENSG00000138641), HERC6 (ENSG00000138642), HERC5 (ENSG00000138646), HERC4 (ENSG00000148634), UBE3B (ENSG00000151148), TRIP12 (ENSG00000153827), HECTD2 (ENSG00000165338), HECTD4 (ENSG00000173064), WWP2 (ENSG00000198373), SMURF1 (ENSG00000198742)
Protein
Protein identifiers
Apoptosis-resistant E3 ubiquitin protein ligase 1 — O15033 (reviewed: O15033)
Alternative names: Apoptosis-resistant HECT-type E3 ubiquitin transferase 1
All UniProt accessions (9): O15033, A0A7P0T811, A0A7P0Z4H7, G3V245, G3V2B5, G3V506, G3V5P7, H0YJ67, H0YJ69
UniProt curated annotations — full annotation on UniProt →
Function. E3 ubiquitin-protein ligase that catalyzes ‘Lys-11’- or ‘Lys-33’-linked polyubiquitin chains, with some preference for ‘Lys-33’ linkages. E3 ubiquitin-protein ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. Ubiquitinates SEPTIN4, DIABLO/SMAC and HTRA2 in vitro. Modulates pulmonary inflammation by targeting SOCS2 for ubiquitination and subsequent degradation by the proteasome.
Subunit / interactions. Interacts with SOCS2. Interacts (via HECT domain) with HTRA2, DIABLO/SMAC and SEPTIN4; in the cytoplasm following induction of apoptosis.
Post-translational modifications. Autoubiquitinated in vitro in the presence of E2 enzyme UBE2D1/UBCH5A.
Pathway. Protein modification; protein ubiquitination.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| O15033-1 | 1 | yes |
| O15033-2 | 2 |
RefSeq proteins (2): NP_001034568, NP_001397975 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000569 | HECT_dom | Domain |
| IPR013783 | Ig-like_fold | Homologous_superfamily |
| IPR014756 | Ig_E-set | Homologous_superfamily |
| IPR017868 | Filamin/ABP280_rpt-like | Repeat |
| IPR035983 | Hect_E3_ubiquitin_ligase | Homologous_superfamily |
| IPR050409 | E3_ubiq-protein_ligase | Family |
| IPR058738 | PH-like_AREL1 | Domain |
| IPR058906 | AREL1_N | Domain |
Pfam: PF00630, PF00632, PF25915, PF25916
Enzyme classification (BRENDA):
- EC 2.3.2.26 — HECT-type E3 ubiquitin transferase (BRENDA: 14 organisms, 64 substrates, 19 inhibitors, 5 Km, 5 kcat entries)
Substrate kinetics (BRENDA)
1 substrates with measured Km, best-characterized 1. Km ranges are aggregated across organisms/conditions.
| Substrate | Km (mM) | Measurements |
|---|---|---|
| [UBC5B]-L-LYSINE | 0.0046–0.037 | 5 |
UniProt features (51 total): helix 22, strand 14, turn 4, sequence conflict 2, region of interest 2, chain 1, repeat 1, domain 1, active site 1, splice variant 1, sequence variant 1, mutagenesis site 1
Structure
Experimental structures (PDB)
2 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 6JX5 | X-RAY DIFFRACTION | 2.4 |
| 6LOH | X-RAY DIFFRACTION | 3.21 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-O15033-F1 | 84.00 | 0.49 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (1): 790 (glycyl thioester intermediate)
Mutagenesis-validated functional residues (1):
| Position | Phenotype |
|---|---|
| 790 | failure to form ubiquitin thioester complex. |
Function
Pathways and Gene Ontology
Reactome pathways
4 pathways
| ID | Pathway |
|---|---|
| R-HSA-983168 | Antigen processing: Ubiquitination & Proteasome degradation |
| R-HSA-1280218 | Adaptive Immune System |
| R-HSA-168256 | Immune System |
| R-HSA-983169 | Class I MHC mediated antigen processing & presentation |
MSigDB gene sets: 158 (showing top):
ELVIDGE_HYPOXIA_DN, REACTOME_ADAPTIVE_IMMUNE_SYSTEM, GOBP_INFLAMMATORY_RESPONSE, REACTOME_CLASS_I_MHC_MEDIATED_ANTIGEN_PROCESSING_PRESENTATION, REACTOME_ANTIGEN_PROCESSING_UBIQUITINATION_PROTEASOME_DEGRADATION, GOBP_MACROMOLECULE_CATABOLIC_PROCESS, chr14q24, FOSTER_TOLERANT_MACROPHAGE_UP, GOBP_PROTEIN_K11_LINKED_UBIQUITINATION, GOBP_REGULATION_OF_RESPONSE_TO_STRESS, CREIGHTON_ENDOCRINE_THERAPY_RESISTANCE_5, GOBP_POST_TRANSLATIONAL_PROTEIN_MODIFICATION, GOBP_PROTEIN_POLYUBIQUITINATION, GOBP_REGULATION_OF_RESPONSE_TO_EXTERNAL_STIMULUS, TIEN_INTESTINE_PROBIOTICS_24HR_UP
GO Biological Process (7): ubiquitin-dependent protein catabolic process (GO:0006511), apoptotic process (GO:0006915), protein ubiquitination (GO:0016567), negative regulation of apoptotic process (GO:0043066), regulation of inflammatory response (GO:0050727), protein K11-linked ubiquitination (GO:0070979), protein K33-linked ubiquitination (GO:1990390)
GO Molecular Function (4): ubiquitin-protein transferase activity (GO:0004842), ubiquitin protein ligase activity (GO:0061630), protein binding (GO:0005515), transferase activity (GO:0016740)
GO Cellular Component (3): cytoplasm (GO:0005737), cytosol (GO:0005829), membrane (GO:0016020)
Reactome top-level categories
Rollup of top-3 pathways:
| Category | Pathways |
|---|---|
| Class I MHC mediated antigen processing & presentation | 1 |
| Immune System | 1 |
| Adaptive Immune System | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 3 |
| protein polyubiquitination | 2 |
| protein ubiquitination | 1 |
| modification-dependent protein catabolic process | 1 |
| programmed cell death | 1 |
| apoptotic signaling pathway | 1 |
| execution phase of apoptosis | 1 |
| protein modification by small protein conjugation | 1 |
| apoptotic process | 1 |
| regulation of apoptotic process | 1 |
| negative regulation of programmed cell death | 1 |
| inflammatory response | 1 |
| regulation of defense response | 1 |
| regulation of response to external stimulus | 1 |
| ubiquitin-like protein transferase activity | 1 |
| ubiquitin-protein transferase activity | 1 |
| ubiquitin-like protein ligase activity | 1 |
| binding | 1 |
| catalytic activity | 1 |
| intracellular anatomical structure | 1 |
| cytoplasm | 1 |
Protein interactions and networks
STRING
1200 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| AREL1 | VRTN | Q9H8Y1 | 622 |
| AREL1 | PROX2 | Q3B8N5 | 598 |
| AREL1 | YLPM1 | P49750 | 548 |
| AREL1 | LRRC74A | Q0VAA2 | 505 |
| AREL1 | FAM161B | Q96MY7 | 478 |
| AREL1 | SYNDIG1L | A6NDD5 | 475 |
| AREL1 | RPS6KL1 | Q9Y6S9 | 474 |
| AREL1 | MTX3 | Q5HYI7 | 472 |
| AREL1 | FCF1 | Q9Y324 | 471 |
| AREL1 | TRIM41 | Q8WV44 | 465 |
| AREL1 | TRIM36 | Q9NQ86 | 462 |
| AREL1 | UBE2C | O00762 | 443 |
| AREL1 | MTX2 | O75431 | 436 |
| AREL1 | HEATR4 | Q86WZ0 | 429 |
| AREL1 | NCBP2 | P52298 | 420 |
IntAct
22 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| SLC16A3 | CASK | psi-mi:“MI:0914”(association) | 0.590 |
| LRRTM1 | UPK3BL1 | psi-mi:“MI:0914”(association) | 0.530 |
| ZNRF4 | UPK3BL1 | psi-mi:“MI:0914”(association) | 0.530 |
| CRKL | AREL1 | psi-mi:“MI:0915”(physical association) | 0.490 |
| AREL1 | CRKL | psi-mi:“MI:0915”(physical association) | 0.490 |
| AREL1 | HSP90AB1 | psi-mi:“MI:0915”(physical association) | 0.400 |
| KCNA2 | TMEM129 | psi-mi:“MI:0914”(association) | 0.350 |
| TTMP | TMEM223 | psi-mi:“MI:0914”(association) | 0.350 |
| PCDHGB4 | FAM171A2 | psi-mi:“MI:0914”(association) | 0.350 |
| PCDHGC4 | psi-mi:“MI:0914”(association) | 0.350 | |
| ATP2A3 | GPR89A | psi-mi:“MI:0914”(association) | 0.350 |
| EVA1B | C2CD2L | psi-mi:“MI:0914”(association) | 0.350 |
| PCDHGB2 | C2CD2L | psi-mi:“MI:0914”(association) | 0.350 |
| PCDHGA5 | AREL1 | psi-mi:“MI:0914”(association) | 0.350 |
| MFSD4A | UBXN8 | psi-mi:“MI:0914”(association) | 0.350 |
| SLC27A6 | NBAS | psi-mi:“MI:0914”(association) | 0.350 |
| SLC4A9 | ILVBL | psi-mi:“MI:0914”(association) | 0.350 |
| SLC9A3 | ESYT3 | psi-mi:“MI:0914”(association) | 0.350 |
| SLC9A5 | NBAS | psi-mi:“MI:0914”(association) | 0.350 |
| AREL1 | psi-mi:“MI:0915”(physical association) | 0.000 | |
| AREL1 | hisH | psi-mi:“MI:0915”(physical association) | 0.000 |
BioGRID (167): AREL1 (Two-hybrid), UBC (Biochemical Activity), UBE2L3 (Reconstituted Complex), UBC (Biochemical Activity), UBE2D1 (Reconstituted Complex), UBE2D2 (Reconstituted Complex), UBE2D3 (Reconstituted Complex), UBE2L3 (Reconstituted Complex), AREL1 (Biochemical Activity), UBE2D1 (Reconstituted Complex), AREL1 (Affinity Capture-Western), PIAS4 (Biochemical Activity), PIAS4 (Affinity Capture-Western), AREL1 (Protein-peptide), GSK3B (Affinity Capture-Western)
ESM2 similar proteins: A0A3Q1LSX9, A2A5R2, A2APV2, A4IID4, A9X1A0, B0KWC1, B1MTG7, B2KI64, B3EX61, B4UT09, D3ZBM7, D4A631, E1C656, F1N6G5, F8W2M1, G3X9K3, G5EBH0, O02810, O08561, O08759, O15033, O46382, P42285, Q05086, Q15386, Q16UN6, Q21029, Q28BK1, Q3U0D9, Q49GP3, Q5GLZ8, Q5PQN1, Q5RD78, Q5U5R9, Q6DCL5, Q6GN16, Q6IN85, Q6NXC0, Q6P2K6, Q6PAV2
Diamond homologs: A0A8C0NGY6, A1CQG2, A1D3C5, A2A5Z6, A2QQ28, A9JRZ0, B0XQ72, B8N7E5, D3ZBM7, D6C652, E1B7Q7, E1C656, F1LP64, F1N6G5, F8W2M1, G0S9J5, G5E870, H2LBU8, O00308, O08759, O13834, O14326, O15033, P39940, P40985, P46934, P46935, P46937, P46938, P51593, P53119, Q03280, Q05086, Q08CZ0, Q09291, Q0CCL1, Q14669, Q15034, Q15386, Q1K9C4
SIGNOR signaling
9 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| AREL1 | “down-regulates quantity by destabilization” | DIABLO | ubiquitination |
| AREL1 | “down-regulates quantity by destabilization” | HTRA2 | ubiquitination |
| AREL1 | “down-regulates quantity by destabilization” | SEPTIN4 | ubiquitination |
| AREL1 | “down-regulates quantity by destabilization” | MTX2 | ubiquitination |
| Ub:E2 | “up-regulates activity” | AREL1 | ubiquitination |
| GSK3B | “down-regulates quantity by destabilization” | AREL1 | phosphorylation |
| AREL1 | “down-regulates quantity by destabilization” | PIAS4 | ubiquitination |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 30 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| SLC-mediated transmembrane transport | 5 | 19.7× | 2e-04 |
| Transport of small molecules | 6 | 10.1× | 5e-04 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
143 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 115 |
| Likely benign | 1 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
3523 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 14:74663823:C:CC | acceptor_gain | 1.0000 |
| 14:74664831:TTTA:T | donor_loss | 1.0000 |
| 14:74664832:TTA:T | donor_loss | 1.0000 |
| 14:74664833:TA:T | donor_loss | 1.0000 |
| 14:74664834:A:C | donor_loss | 1.0000 |
| 14:74664921:AGCAG:A | acceptor_gain | 1.0000 |
| 14:74664922:GCAG:G | acceptor_gain | 1.0000 |
| 14:74664923:CAG:C | acceptor_gain | 1.0000 |
| 14:74664923:CAGC:C | acceptor_gain | 1.0000 |
| 14:74664924:AG:A | acceptor_gain | 1.0000 |
| 14:74664924:AGC:A | acceptor_loss | 1.0000 |
| 14:74664925:GC:G | acceptor_loss | 1.0000 |
| 14:74664926:C:CC | acceptor_gain | 1.0000 |
| 14:74664926:C:T | acceptor_loss | 1.0000 |
| 14:74664927:T:C | acceptor_loss | 1.0000 |
| 14:74666525:T:C | donor_gain | 1.0000 |
| 14:74667313:ACTT:A | donor_loss | 1.0000 |
| 14:74667314:CTTA:C | donor_loss | 1.0000 |
| 14:74667315:TTACC:T | donor_loss | 1.0000 |
| 14:74667316:TA:T | donor_loss | 1.0000 |
| 14:74667317:A:AC | donor_gain | 1.0000 |
| 14:74667318:C:CA | donor_loss | 1.0000 |
| 14:74667318:C:CC | donor_gain | 1.0000 |
| 14:74667318:CCT:C | donor_gain | 1.0000 |
| 14:74667373:CAGGC:C | acceptor_gain | 1.0000 |
| 14:74667375:GGC:G | acceptor_gain | 1.0000 |
| 14:74667376:GCC:G | acceptor_loss | 1.0000 |
| 14:74667378:C:CC | acceptor_gain | 1.0000 |
| 14:74667378:C:G | acceptor_loss | 1.0000 |
| 14:74667379:T:G | acceptor_loss | 1.0000 |
AlphaMissense
5410 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 14:74663732:A:C | F820L | 1.000 |
| 14:74663732:A:T | F820L | 1.000 |
| 14:74663734:A:G | F820L | 1.000 |
| 14:74663811:A:G | L794P | 1.000 |
| 14:74663914:G:C | P785R | 1.000 |
| 14:74663914:G:T | P785H | 1.000 |
| 14:74663915:G:A | P785S | 1.000 |
| 14:74663915:G:T | P785T | 1.000 |
| 14:74664006:G:C | F754L | 1.000 |
| 14:74664006:G:T | F754L | 1.000 |
| 14:74664007:A:G | F754S | 1.000 |
| 14:74664008:A:G | F754L | 1.000 |
| 14:74664016:A:G | L751P | 1.000 |
| 14:74667323:A:G | L700P | 1.000 |
| 14:74667337:A:C | F695L | 1.000 |
| 14:74667337:A:T | F695L | 1.000 |
| 14:74667339:A:G | F695L | 1.000 |
| 14:74667374:A:G | L683P | 1.000 |
| 14:74667465:C:G | G682R | 1.000 |
| 14:74667518:G:T | A664D | 1.000 |
| 14:74667521:A:G | L663P | 1.000 |
| 14:74667534:A:C | Y659D | 1.000 |
| 14:74667557:A:T | V651D | 1.000 |
| 14:74670056:C:T | G560D | 1.000 |
| 14:74670068:C:T | G556E | 1.000 |
| 14:74670069:C:G | G556R | 1.000 |
| 14:74670069:C:T | G556R | 1.000 |
| 14:74670842:A:G | W510R | 1.000 |
| 14:74670842:A:T | W510R | 1.000 |
| 14:74671447:A:G | W487R | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000065189 (14:74677724 A>G), RS1000124777 (14:74712467 A>G), RS1000147040 (14:74684280 A>C), RS1000153733 (14:74686758 G>A), RS1000237749 (14:74673543 A>G), RS1000380652 (14:74680453 G>A), RS1000390134 (14:74680531 C>T), RS1000459722 (14:74704699 C>A,T), RS1000490526 (14:74685362 G>T), RS1000502392 (14:74666430 T>C,G), RS1000504705 (14:74672154 T>C), RS1000554594 (14:74664900 A>T), RS1000665955 (14:74679240 T>C), RS1000678054 (14:74678951 C>T), RS1000886913 (14:74680218 G>A)
Disease associations
OMIM: gene MIM:615380 | disease phenotypes: MIM:114500, MIM:614385
GenCC curated gene-disease
Mondo (3): endometrial carcinoma (MONDO:0002447), colorectal cancer (MONDO:0005575), colorectal cancer, hereditary nonpolyposis, type 7 (MONDO:0013725)
Orphanet (2): Lynch syndrome (Orphanet:144), NON RARE IN EUROPE: Colorectal cancer (Orphanet:466667)
HPO phenotypes
1 total (1 of 1 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0012114 | Endometrial carcinoma |
GWAS associations
5 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST005237_3 | Mood instability | 1.000000e-06 |
| GCST005238_3 | Mood instability | 3.000000e-09 |
| GCST007709_129 | General factor of neuroticism | 2.000000e-10 |
| GCST007709_131 | General factor of neuroticism | 6.000000e-09 |
| GCST90011770_68 | Glaucoma (primary open-angle) | 2.000000e-13 |
EFO canonical traits (2, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0008475 | mood instability measurement |
| EFO:0007660 | neuroticism measurement |
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| C565777 | Colorectal Cancer, Hereditary Nonpolyposis, Type 7 (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
23 total (human), top 23 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| methacrylaldehyde | affects cotreatment, increases expression, increases abundance | 2 |
| Acrolein | affects cotreatment, increases expression, increases abundance | 2 |
| Ozone | increases abundance, affects cotreatment, increases expression | 2 |
| FR900359 | affects phosphorylation | 1 |
| dicrotophos | increases expression | 1 |
| alpha-pinene | affects cotreatment, increases expression, increases abundance | 1 |
| bisphenol A | affects cotreatment, increases methylation | 1 |
| hydroxyhydroquinone | increases expression | 1 |
| sodium arsenite | increases expression | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| pinostrobin | increases expression | 1 |
| bisphenol S | decreases methylation | 1 |
| Sunitinib | increases expression | 1 |
| Fulvestrant | affects cotreatment, increases methylation | 1 |
| Acetaminophen | increases expression | 1 |
| Air Pollutants | increases expression, affects cotreatment, increases abundance | 1 |
| Benzo(a)pyrene | affects methylation | 1 |
| Cisplatin | decreases expression | 1 |
| Folic Acid | decreases expression | 1 |
| Smoke | decreases expression | 1 |
| Antirheumatic Agents | decreases expression | 1 |
| Lactic Acid | decreases expression | 1 |
| Volatile Organic Compounds | affects cotreatment, increases expression | 1 |
Clinical trials (associated diseases)
300 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00190697 | PHASE4 | COMPLETED | A Study of LY353381 (Arzoxifene) for Patients Who Benefitted From This Drug in Other Oncology Trials and Wished to Continue Treatment |
| NCT00719017 | PHASE4 | UNKNOWN | Upper Vaginectomy Versus Brachytherapy in Patients With Early Stage Endometrial Cancer Treated With Laparoscopic Surgery |
| NCT02543710 | PHASE4 | RECRUITING | Biomarker Guided Treatment in Gynaecological Cancer |
| NCT03349463 | PHASE4 | UNKNOWN | Evaluation of Fluciclovine Uptake in Patients With Cervical, Ovarian Epithelial or Endometrial Cancers. |
| NCT03752606 | PHASE4 | COMPLETED | Application of Tachosil During Lymphadenectomy |
| NCT05949424 | PHASE4 | UNKNOWN | OPTI - DOSE: Optimal Dosing of Oral Anticancer Drugs in Older Adults |
| NCT06049693 | PHASE4 | COMPLETED | Iron Prehabilitation in Endometrial Cancer |
| NCT06726291 | PHASE4 | RECRUITING | Akynzeo as Antiemetic Treatment in Patients With Endometrial Cancer |
| NCT06871787 | PHASE4 | NOT_YET_RECRUITING | Near-Infrared Fluorescence Imaging With Indocyanine Green to Evaluate Bowel Anastomoses in Gynecologic Oncology Surgery |
| NCT07281547 | PHASE4 | NOT_YET_RECRUITING | Low Dose Aspirin to Lower Inflammation and Prevent Endometrial Cancer in Postmenopausal Women With Non-atrophic Endometrial Changes and Pain |
| NCT07462663 | PHASE4 | NOT_YET_RECRUITING | SHAPE-ENDO: Multimodal Pre-Surgical Optimization in Patients With Obesity and Early-Stage Endometrial Cancer (Phase 1) |
| NCT00002459 | PHASE3 | COMPLETED | Radiation Therapy or No Further Treatment Following Surgery in Treating Patients With Cancer of the Uterus |
| NCT00002493 | PHASE3 | COMPLETED | Radiation Therapy Compared With Combination Chemotherapy in Treating Patients With Advanced Endometrial Cancer |
| NCT00002641 | PHASE3 | COMPLETED | Surgery With or Without Chemotherapy in Treating Patients With Soft Tissue Sarcoma |
| NCT00002764 | PHASE3 | COMPLETED | Surgery With or Without Combination Chemotherapy in Treating Patients With Lung Metastases From Soft Tissue Sarcoma |
| NCT00002920 | PHASE3 | COMPLETED | S9630, Medroxyprogesterone in Treating Women With Breast Cancer |
| NCT00002976 | PHASE3 | TERMINATED | Estrogen Replacement Therapy in Treating Women With Early-Stage Endometrial Cancer |
| NCT00003267 | PHASE3 | COMPLETED | Pelvic Drains After Radical Hysterectomy in Treating Patients With Uterine, Cervical, or Vaginal Cancer |
| NCT00003691 | PHASE3 | COMPLETED | Combination Chemotherapy With or Without G-CSF in Treating Patients With Stage III, Stage IV, or Recurrent Endometrial Cancer |
| NCT00003749 | PHASE3 | COMPLETED | Surgery With or Without Lymphadenectomy and Radiation Therapy in Treating Patients With Endometrial Cancer |
| NCT00005583 | PHASE3 | COMPLETED | Radiation Therapy With or Without Chemotherapy in Treating Patients With High-Risk Endometrial Cancer |
| NCT00006027 | PHASE3 | COMPLETED | Comparison of Radiation Therapy With or Without Combination Chemotherapy Following Surgery in Treating Patients With Stage I or Stage II Endometrial Cancer |
| NCT00016341 | PHASE3 | TERMINATED | Combination Chemotherapy Compared With Hormone Therapy in Treating Patients With Recurrent, Stage III, or Stage IV Endometrial Cancer |
| NCT00033605 | PHASE3 | COMPLETED | Octreotide in Preventing Diarrhea in Patients Who Are Undergoing Radiation Therapy to the Pelvis |
| NCT00096408 | PHASE3 | COMPLETED | Laparoscopic Approach to Cancer of the Endometrium |
| NCT00245050 | PHASE3 | COMPLETED | Pyridoxine in Preventing Hand-Foot Syndrome in Patients Who Are Receiving Liposomal Doxorubicin for Cancer |
| NCT00376844 | PHASE3 | COMPLETED | External-Beam Radiation Therapy Compared With Vaginal Brachytherapy After Surgery for Stage I Endometrial Cancer |
| NCT00411138 | PHASE3 | UNKNOWN | Randomized Trial of Radiation Therapy With or Without Chemotherapy for Endometrial Cancer |
| NCT00566644 | PHASE3 | TERMINATED | Intrauterine Levonorgestrel and Observation or Observation Alone in Preventing Atypical Endometrial Hyperplasia and Endometrial Cancer in Women With Hereditary Non-Polyposis Colorectal Cancer or Lynch Syndrome |
| NCT00883116 | PHASE3 | TERMINATED | A Study of Ixabepilone as Second-line Therapy for Locally Advanced, Recurrent, or Metastatic Endometrial Cancer |
| NCT01087268 | PHASE3 | UNKNOWN | Hyperbaric Oxygen Therapy in Treating Long-Term Gastrointestinal Adverse Effects Caused by Radiation Therapy in Patients With Pelvic Cancer |
| NCT01470677 | PHASE3 | COMPLETED | Tachosil for the Prevention of Symptomatic Lymph Cysts |
| NCT01672892 | PHASE3 | COMPLETED | Standard Versus Intensity-Modulated Pelvic Radiation Therapy in Treating Patients With Endometrial or Cervical Cancer |
| NCT01767155 | PHASE3 | COMPLETED | Zoptarelin Doxorubicin (AEZS 108) as Second Line Therapy for Endometrial Cancer |
| NCT02584478 | PHASE3 | UNKNOWN | Phase 1/2a/3 Evaluation of Adding AL3818 to Standard Platinum-Based Chemotherapy in Subjects With Recurrent or Metastatic Endometrial, Ovarian, Fallopian, Primary Peritoneal or Cervical Carcinoma (AL3818-US-002) |
| NCT02762214 | PHASE3 | UNKNOWN | Role of Uterine Manipulator in Hysterectomy - Ro.Man.HY |
| NCT03469674 | PHASE3 | ACTIVE_NOT_RECRUITING | PORTEC-4a: Molecular Profile-based Versus Standard Adjuvant Radiotherapy in Endometrial Cancer |
| NCT03555422 | PHASE3 | COMPLETED | Maintenance With Selinexor/Placebo After Combination Chemotherapy in Participants With Endometrial Cancer [SIENDO] |
| NCT03603184 | PHASE3 | COMPLETED | Atezolizumab Trial in Endometrial Cancer - AtTEnd |
| NCT03785288 | PHASE3 | RECRUITING | Vaginal Cuff Brachytherapy Fractionation Study |
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): colorectal cancer, hereditary nonpolyposis, type 7, endometrial carcinoma, open-angle glaucoma